Multiple sequence alignment - TraesCS2B01G249000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G249000 | chr2B | 100.000 | 3155 | 0 | 0 | 1 | 3155 | 256330908 | 256327754 | 0.000000e+00 | 5827.0 |
1 | TraesCS2B01G249000 | chr2B | 79.323 | 266 | 48 | 7 | 1 | 263 | 49294195 | 49294456 | 2.500000e-41 | 180.0 |
2 | TraesCS2B01G249000 | chr2D | 95.837 | 2042 | 62 | 10 | 978 | 3010 | 202570123 | 202568096 | 0.000000e+00 | 3278.0 |
3 | TraesCS2B01G249000 | chr2D | 90.311 | 289 | 16 | 3 | 1 | 277 | 202570746 | 202570458 | 4.970000e-98 | 368.0 |
4 | TraesCS2B01G249000 | chr2D | 84.259 | 108 | 11 | 4 | 3014 | 3121 | 202566142 | 202566041 | 2.000000e-17 | 100.0 |
5 | TraesCS2B01G249000 | chr2A | 92.657 | 2138 | 91 | 24 | 871 | 2963 | 229675705 | 229673589 | 0.000000e+00 | 3018.0 |
6 | TraesCS2B01G249000 | chr2A | 86.395 | 294 | 28 | 3 | 1 | 282 | 229716464 | 229716171 | 8.500000e-81 | 311.0 |
7 | TraesCS2B01G249000 | chr3A | 78.338 | 337 | 47 | 12 | 1 | 312 | 131456583 | 131456918 | 8.930000e-46 | 195.0 |
8 | TraesCS2B01G249000 | chr7D | 81.897 | 232 | 37 | 5 | 1 | 229 | 517593676 | 517593447 | 1.160000e-44 | 191.0 |
9 | TraesCS2B01G249000 | chr6B | 87.421 | 159 | 20 | 0 | 70 | 228 | 536014532 | 536014374 | 1.930000e-42 | 183.0 |
10 | TraesCS2B01G249000 | chr7B | 81.116 | 233 | 38 | 4 | 1 | 228 | 550671882 | 550671651 | 6.950000e-42 | 182.0 |
11 | TraesCS2B01G249000 | chr1A | 82.967 | 182 | 30 | 1 | 1 | 181 | 256917849 | 256918030 | 2.520000e-36 | 163.0 |
12 | TraesCS2B01G249000 | chr4A | 78.388 | 273 | 42 | 11 | 1 | 263 | 109446862 | 109446597 | 9.060000e-36 | 161.0 |
13 | TraesCS2B01G249000 | chr1B | 95.349 | 43 | 2 | 0 | 266 | 308 | 210757419 | 210757377 | 5.650000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G249000 | chr2B | 256327754 | 256330908 | 3154 | True | 5827.000000 | 5827 | 100.000000 | 1 | 3155 | 1 | chr2B.!!$R1 | 3154 |
1 | TraesCS2B01G249000 | chr2D | 202566041 | 202570746 | 4705 | True | 1248.666667 | 3278 | 90.135667 | 1 | 3121 | 3 | chr2D.!!$R1 | 3120 |
2 | TraesCS2B01G249000 | chr2A | 229673589 | 229675705 | 2116 | True | 3018.000000 | 3018 | 92.657000 | 871 | 2963 | 1 | chr2A.!!$R1 | 2092 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
694 | 707 | 0.03601 | AGGAAGAAGATGCGGGTGTG | 60.036 | 55.0 | 0.0 | 0.0 | 0.0 | 3.82 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2190 | 2390 | 0.109781 | GTGCGTCGGTCATTTGCATT | 60.11 | 50.0 | 0.0 | 0.0 | 37.93 | 3.56 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 1.201181 | AGCTAGCACGACAAGTCTCAG | 59.799 | 52.381 | 18.83 | 0.00 | 0.00 | 3.35 |
84 | 85 | 9.780413 | GAAGACTCTGTTTAATGATTTTGGATC | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
142 | 143 | 6.867816 | TCAAATGATGTTGGCTTTTACATGAC | 59.132 | 34.615 | 0.00 | 0.00 | 35.24 | 3.06 |
182 | 183 | 3.012518 | TGCAACCCAACCAACATTTTTG | 58.987 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
190 | 191 | 7.621796 | ACCCAACCAACATTTTTGTTTTACTA | 58.378 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
257 | 270 | 7.568199 | TTATCAAGGGACAATTTAGCTTAGC | 57.432 | 36.000 | 0.00 | 0.00 | 0.00 | 3.09 |
259 | 272 | 4.943705 | TCAAGGGACAATTTAGCTTAGCAG | 59.056 | 41.667 | 7.07 | 0.00 | 0.00 | 4.24 |
277 | 290 | 2.360165 | GCAGAAAGGTCATTAGCATGGG | 59.640 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
278 | 291 | 3.624777 | CAGAAAGGTCATTAGCATGGGT | 58.375 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
279 | 292 | 4.019174 | CAGAAAGGTCATTAGCATGGGTT | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 4.11 |
280 | 293 | 4.096984 | CAGAAAGGTCATTAGCATGGGTTC | 59.903 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
281 | 294 | 3.737559 | AAGGTCATTAGCATGGGTTCA | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
282 | 295 | 3.959495 | AGGTCATTAGCATGGGTTCAT | 57.041 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
283 | 296 | 4.255510 | AGGTCATTAGCATGGGTTCATT | 57.744 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
284 | 297 | 3.956199 | AGGTCATTAGCATGGGTTCATTG | 59.044 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
285 | 298 | 3.701040 | GGTCATTAGCATGGGTTCATTGT | 59.299 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
286 | 299 | 4.887071 | GGTCATTAGCATGGGTTCATTGTA | 59.113 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
287 | 300 | 5.009010 | GGTCATTAGCATGGGTTCATTGTAG | 59.991 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
288 | 301 | 4.580167 | TCATTAGCATGGGTTCATTGTAGC | 59.420 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
289 | 302 | 2.814805 | AGCATGGGTTCATTGTAGCT | 57.185 | 45.000 | 0.00 | 0.00 | 0.00 | 3.32 |
290 | 303 | 3.091633 | AGCATGGGTTCATTGTAGCTT | 57.908 | 42.857 | 0.00 | 0.00 | 28.42 | 3.74 |
291 | 304 | 4.235079 | AGCATGGGTTCATTGTAGCTTA | 57.765 | 40.909 | 0.00 | 0.00 | 28.42 | 3.09 |
292 | 305 | 4.599041 | AGCATGGGTTCATTGTAGCTTAA | 58.401 | 39.130 | 0.00 | 0.00 | 28.42 | 1.85 |
293 | 306 | 5.203528 | AGCATGGGTTCATTGTAGCTTAAT | 58.796 | 37.500 | 0.00 | 0.00 | 28.42 | 1.40 |
294 | 307 | 5.658190 | AGCATGGGTTCATTGTAGCTTAATT | 59.342 | 36.000 | 0.00 | 0.00 | 28.42 | 1.40 |
295 | 308 | 6.833416 | AGCATGGGTTCATTGTAGCTTAATTA | 59.167 | 34.615 | 0.00 | 0.00 | 28.42 | 1.40 |
296 | 309 | 7.506938 | AGCATGGGTTCATTGTAGCTTAATTAT | 59.493 | 33.333 | 0.00 | 0.00 | 28.42 | 1.28 |
297 | 310 | 8.792633 | GCATGGGTTCATTGTAGCTTAATTATA | 58.207 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
299 | 312 | 8.918202 | TGGGTTCATTGTAGCTTAATTATAGG | 57.082 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
300 | 313 | 7.942341 | TGGGTTCATTGTAGCTTAATTATAGGG | 59.058 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
301 | 314 | 7.393515 | GGGTTCATTGTAGCTTAATTATAGGGG | 59.606 | 40.741 | 0.00 | 0.00 | 0.00 | 4.79 |
302 | 315 | 7.942894 | GGTTCATTGTAGCTTAATTATAGGGGT | 59.057 | 37.037 | 0.00 | 0.00 | 0.00 | 4.95 |
303 | 316 | 8.784043 | GTTCATTGTAGCTTAATTATAGGGGTG | 58.216 | 37.037 | 0.00 | 0.00 | 0.00 | 4.61 |
304 | 317 | 8.041143 | TCATTGTAGCTTAATTATAGGGGTGT | 57.959 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
305 | 318 | 8.499406 | TCATTGTAGCTTAATTATAGGGGTGTT | 58.501 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
306 | 319 | 9.787435 | CATTGTAGCTTAATTATAGGGGTGTTA | 57.213 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
308 | 321 | 9.841295 | TTGTAGCTTAATTATAGGGGTGTTAAG | 57.159 | 33.333 | 0.00 | 0.00 | 36.14 | 1.85 |
309 | 322 | 8.434392 | TGTAGCTTAATTATAGGGGTGTTAAGG | 58.566 | 37.037 | 0.00 | 0.00 | 34.54 | 2.69 |
310 | 323 | 6.849151 | AGCTTAATTATAGGGGTGTTAAGGG | 58.151 | 40.000 | 0.00 | 0.00 | 34.54 | 3.95 |
311 | 324 | 6.008331 | GCTTAATTATAGGGGTGTTAAGGGG | 58.992 | 44.000 | 0.00 | 0.00 | 34.54 | 4.79 |
312 | 325 | 6.533639 | TTAATTATAGGGGTGTTAAGGGGG | 57.466 | 41.667 | 0.00 | 0.00 | 0.00 | 5.40 |
329 | 342 | 4.614036 | GGTGGGGTTGGGTGGGTG | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
330 | 343 | 4.614036 | GTGGGGTTGGGTGGGTGG | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
333 | 346 | 4.614036 | GGGTTGGGTGGGTGGGTG | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
334 | 347 | 4.614036 | GGTTGGGTGGGTGGGTGG | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
335 | 348 | 4.614036 | GTTGGGTGGGTGGGTGGG | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
361 | 374 | 2.360350 | CGGTGGCTTGGCTGTGAT | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 3.06 |
362 | 375 | 2.693762 | CGGTGGCTTGGCTGTGATG | 61.694 | 63.158 | 0.00 | 0.00 | 0.00 | 3.07 |
363 | 376 | 1.303561 | GGTGGCTTGGCTGTGATGA | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 2.92 |
364 | 377 | 1.589716 | GGTGGCTTGGCTGTGATGAC | 61.590 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
365 | 378 | 1.672030 | TGGCTTGGCTGTGATGACG | 60.672 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
366 | 379 | 2.401766 | GGCTTGGCTGTGATGACGG | 61.402 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
393 | 406 | 2.431942 | CAACGAGGACGAACCGGG | 60.432 | 66.667 | 6.32 | 0.00 | 44.74 | 5.73 |
420 | 433 | 2.285083 | CGATGGAGCGGTGGAAAATAA | 58.715 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
422 | 435 | 2.122783 | TGGAGCGGTGGAAAATAAGG | 57.877 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
423 | 436 | 1.353022 | TGGAGCGGTGGAAAATAAGGT | 59.647 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
424 | 437 | 2.224917 | TGGAGCGGTGGAAAATAAGGTT | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
427 | 440 | 3.694566 | GAGCGGTGGAAAATAAGGTTGAT | 59.305 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
428 | 441 | 3.694566 | AGCGGTGGAAAATAAGGTTGATC | 59.305 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
430 | 443 | 4.013728 | CGGTGGAAAATAAGGTTGATCCA | 58.986 | 43.478 | 0.00 | 0.00 | 39.02 | 3.41 |
440 | 453 | 2.431771 | TTGATCCACGACGTGCGG | 60.432 | 61.111 | 22.46 | 10.27 | 46.49 | 5.69 |
441 | 454 | 3.925362 | TTGATCCACGACGTGCGGG | 62.925 | 63.158 | 22.46 | 9.50 | 46.49 | 6.13 |
488 | 501 | 4.280019 | GGTGCTTGGGGTCGGGTT | 62.280 | 66.667 | 0.00 | 0.00 | 0.00 | 4.11 |
489 | 502 | 2.983592 | GTGCTTGGGGTCGGGTTG | 60.984 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
490 | 503 | 3.494254 | TGCTTGGGGTCGGGTTGT | 61.494 | 61.111 | 0.00 | 0.00 | 0.00 | 3.32 |
491 | 504 | 2.983592 | GCTTGGGGTCGGGTTGTG | 60.984 | 66.667 | 0.00 | 0.00 | 0.00 | 3.33 |
492 | 505 | 2.282180 | CTTGGGGTCGGGTTGTGG | 60.282 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
493 | 506 | 4.589675 | TTGGGGTCGGGTTGTGGC | 62.590 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
498 | 511 | 4.612412 | GTCGGGTTGTGGCCACGA | 62.612 | 66.667 | 30.07 | 26.57 | 0.00 | 4.35 |
499 | 512 | 4.612412 | TCGGGTTGTGGCCACGAC | 62.612 | 66.667 | 38.50 | 38.50 | 43.38 | 4.34 |
502 | 515 | 4.922026 | GGTTGTGGCCACGACGGT | 62.922 | 66.667 | 38.25 | 0.00 | 44.70 | 4.83 |
503 | 516 | 3.645975 | GTTGTGGCCACGACGGTG | 61.646 | 66.667 | 34.94 | 0.00 | 43.99 | 4.94 |
511 | 524 | 2.247267 | CACGACGGTGGCGAAAAC | 59.753 | 61.111 | 0.00 | 0.00 | 40.58 | 2.43 |
512 | 525 | 3.332409 | ACGACGGTGGCGAAAACG | 61.332 | 61.111 | 0.00 | 0.00 | 0.00 | 3.60 |
513 | 526 | 4.067016 | CGACGGTGGCGAAAACGG | 62.067 | 66.667 | 0.27 | 0.00 | 0.00 | 4.44 |
514 | 527 | 4.379143 | GACGGTGGCGAAAACGGC | 62.379 | 66.667 | 9.08 | 9.08 | 0.00 | 5.68 |
523 | 536 | 4.394078 | GAAAACGGCGGCGGGAAC | 62.394 | 66.667 | 35.05 | 19.03 | 0.00 | 3.62 |
535 | 548 | 3.202706 | GGGAACGAATCGGGCAGC | 61.203 | 66.667 | 7.80 | 0.00 | 0.00 | 5.25 |
536 | 549 | 3.564027 | GGAACGAATCGGGCAGCG | 61.564 | 66.667 | 7.80 | 0.00 | 0.00 | 5.18 |
537 | 550 | 3.564027 | GAACGAATCGGGCAGCGG | 61.564 | 66.667 | 7.80 | 0.00 | 0.00 | 5.52 |
557 | 570 | 4.351938 | GCGGGGTGGCCGAAAAAC | 62.352 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
558 | 571 | 4.032987 | CGGGGTGGCCGAAAAACG | 62.033 | 66.667 | 0.00 | 0.00 | 42.18 | 3.60 |
559 | 572 | 4.351938 | GGGGTGGCCGAAAAACGC | 62.352 | 66.667 | 0.00 | 0.00 | 41.07 | 4.84 |
560 | 573 | 4.351938 | GGGTGGCCGAAAAACGCC | 62.352 | 66.667 | 0.00 | 0.00 | 41.07 | 5.68 |
561 | 574 | 3.292159 | GGTGGCCGAAAAACGCCT | 61.292 | 61.111 | 0.00 | 0.00 | 41.07 | 5.52 |
562 | 575 | 2.050442 | GTGGCCGAAAAACGCCTG | 60.050 | 61.111 | 0.00 | 0.00 | 41.07 | 4.85 |
563 | 576 | 2.203224 | TGGCCGAAAAACGCCTGA | 60.203 | 55.556 | 0.00 | 0.00 | 41.07 | 3.86 |
564 | 577 | 1.602323 | TGGCCGAAAAACGCCTGAT | 60.602 | 52.632 | 0.00 | 0.00 | 41.07 | 2.90 |
565 | 578 | 1.175983 | TGGCCGAAAAACGCCTGATT | 61.176 | 50.000 | 0.00 | 0.00 | 41.07 | 2.57 |
566 | 579 | 0.456142 | GGCCGAAAAACGCCTGATTC | 60.456 | 55.000 | 0.00 | 0.00 | 41.07 | 2.52 |
567 | 580 | 0.239879 | GCCGAAAAACGCCTGATTCA | 59.760 | 50.000 | 0.00 | 0.00 | 41.07 | 2.57 |
568 | 581 | 1.135402 | GCCGAAAAACGCCTGATTCAT | 60.135 | 47.619 | 0.00 | 0.00 | 41.07 | 2.57 |
569 | 582 | 2.518949 | CCGAAAAACGCCTGATTCATG | 58.481 | 47.619 | 0.00 | 0.00 | 41.07 | 3.07 |
570 | 583 | 2.518949 | CGAAAAACGCCTGATTCATGG | 58.481 | 47.619 | 0.00 | 0.00 | 34.51 | 3.66 |
571 | 584 | 2.262211 | GAAAAACGCCTGATTCATGGC | 58.738 | 47.619 | 13.85 | 13.85 | 45.25 | 4.40 |
575 | 588 | 3.113745 | GCCTGATTCATGGCGTGG | 58.886 | 61.111 | 6.90 | 0.00 | 39.71 | 4.94 |
576 | 589 | 2.484062 | GCCTGATTCATGGCGTGGG | 61.484 | 63.158 | 6.90 | 0.57 | 39.71 | 4.61 |
577 | 590 | 1.825191 | CCTGATTCATGGCGTGGGG | 60.825 | 63.158 | 6.90 | 0.00 | 0.00 | 4.96 |
578 | 591 | 2.440065 | TGATTCATGGCGTGGGGC | 60.440 | 61.111 | 6.90 | 0.00 | 42.51 | 5.80 |
579 | 592 | 3.585990 | GATTCATGGCGTGGGGCG | 61.586 | 66.667 | 6.90 | 0.00 | 44.92 | 6.13 |
580 | 593 | 4.108299 | ATTCATGGCGTGGGGCGA | 62.108 | 61.111 | 6.90 | 0.00 | 44.92 | 5.54 |
581 | 594 | 3.420206 | ATTCATGGCGTGGGGCGAT | 62.420 | 57.895 | 6.90 | 0.00 | 44.92 | 4.58 |
582 | 595 | 4.545706 | TCATGGCGTGGGGCGATC | 62.546 | 66.667 | 6.90 | 0.00 | 44.92 | 3.69 |
587 | 600 | 3.861263 | GCGTGGGGCGATCGAAAC | 61.861 | 66.667 | 21.57 | 7.85 | 44.77 | 2.78 |
588 | 601 | 3.550992 | CGTGGGGCGATCGAAACG | 61.551 | 66.667 | 21.57 | 17.22 | 44.77 | 3.60 |
596 | 609 | 3.183323 | GATCGAAACGCGGCGGAA | 61.183 | 61.111 | 27.37 | 7.09 | 41.33 | 4.30 |
597 | 610 | 3.415955 | GATCGAAACGCGGCGGAAC | 62.416 | 63.158 | 27.37 | 14.98 | 41.33 | 3.62 |
600 | 613 | 3.652000 | GAAACGCGGCGGAACCAA | 61.652 | 61.111 | 27.37 | 0.00 | 39.03 | 3.67 |
601 | 614 | 3.867226 | GAAACGCGGCGGAACCAAC | 62.867 | 63.158 | 27.37 | 6.76 | 39.03 | 3.77 |
607 | 620 | 3.110178 | GGCGGAACCAACGACGAG | 61.110 | 66.667 | 0.00 | 0.00 | 38.86 | 4.18 |
608 | 621 | 3.110178 | GCGGAACCAACGACGAGG | 61.110 | 66.667 | 0.00 | 5.65 | 0.00 | 4.63 |
609 | 622 | 2.431942 | CGGAACCAACGACGAGGG | 60.432 | 66.667 | 0.00 | 4.82 | 0.00 | 4.30 |
610 | 623 | 2.739132 | GGAACCAACGACGAGGGT | 59.261 | 61.111 | 0.00 | 5.54 | 36.19 | 4.34 |
611 | 624 | 1.666872 | GGAACCAACGACGAGGGTG | 60.667 | 63.158 | 14.18 | 1.77 | 34.51 | 4.61 |
612 | 625 | 1.666872 | GAACCAACGACGAGGGTGG | 60.667 | 63.158 | 14.18 | 12.00 | 34.51 | 4.61 |
613 | 626 | 2.373434 | GAACCAACGACGAGGGTGGT | 62.373 | 60.000 | 13.20 | 13.20 | 42.12 | 4.16 |
614 | 627 | 2.357034 | CCAACGACGAGGGTGGTG | 60.357 | 66.667 | 0.00 | 0.00 | 35.12 | 4.17 |
615 | 628 | 2.357034 | CAACGACGAGGGTGGTGG | 60.357 | 66.667 | 0.00 | 0.00 | 35.12 | 4.61 |
616 | 629 | 2.522436 | AACGACGAGGGTGGTGGA | 60.522 | 61.111 | 0.00 | 0.00 | 35.12 | 4.02 |
617 | 630 | 2.571216 | AACGACGAGGGTGGTGGAG | 61.571 | 63.158 | 0.00 | 0.00 | 35.12 | 3.86 |
618 | 631 | 4.436998 | CGACGAGGGTGGTGGAGC | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
619 | 632 | 4.436998 | GACGAGGGTGGTGGAGCG | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 5.03 |
629 | 642 | 4.899239 | GTGGAGCGGCCGGATCTG | 62.899 | 72.222 | 29.38 | 0.00 | 40.66 | 2.90 |
653 | 666 | 3.564027 | GCGACAGCGGCATGGTAC | 61.564 | 66.667 | 1.45 | 0.00 | 38.16 | 3.34 |
654 | 667 | 3.254654 | CGACAGCGGCATGGTACG | 61.255 | 66.667 | 1.45 | 2.90 | 0.00 | 3.67 |
655 | 668 | 2.890474 | GACAGCGGCATGGTACGG | 60.890 | 66.667 | 1.45 | 0.00 | 0.00 | 4.02 |
656 | 669 | 3.659089 | GACAGCGGCATGGTACGGT | 62.659 | 63.158 | 1.45 | 0.00 | 41.98 | 4.83 |
658 | 671 | 4.467084 | AGCGGCATGGTACGGTGG | 62.467 | 66.667 | 1.45 | 0.00 | 39.55 | 4.61 |
663 | 676 | 4.849310 | CATGGTACGGTGGGCGGG | 62.849 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
681 | 694 | 4.082523 | CAAGCGGCGGGAGGAAGA | 62.083 | 66.667 | 9.78 | 0.00 | 0.00 | 2.87 |
682 | 695 | 3.319198 | AAGCGGCGGGAGGAAGAA | 61.319 | 61.111 | 9.78 | 0.00 | 0.00 | 2.52 |
683 | 696 | 3.316573 | AAGCGGCGGGAGGAAGAAG | 62.317 | 63.158 | 9.78 | 0.00 | 0.00 | 2.85 |
684 | 697 | 3.771160 | GCGGCGGGAGGAAGAAGA | 61.771 | 66.667 | 9.78 | 0.00 | 0.00 | 2.87 |
685 | 698 | 3.095347 | GCGGCGGGAGGAAGAAGAT | 62.095 | 63.158 | 9.78 | 0.00 | 0.00 | 2.40 |
686 | 699 | 1.227380 | CGGCGGGAGGAAGAAGATG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
687 | 700 | 1.524849 | GGCGGGAGGAAGAAGATGC | 60.525 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
688 | 701 | 1.884926 | GCGGGAGGAAGAAGATGCG | 60.885 | 63.158 | 0.00 | 0.00 | 0.00 | 4.73 |
689 | 702 | 1.227380 | CGGGAGGAAGAAGATGCGG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
690 | 703 | 1.147153 | GGGAGGAAGAAGATGCGGG | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
691 | 704 | 1.627297 | GGGAGGAAGAAGATGCGGGT | 61.627 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
692 | 705 | 0.462759 | GGAGGAAGAAGATGCGGGTG | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
693 | 706 | 0.250513 | GAGGAAGAAGATGCGGGTGT | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
694 | 707 | 0.036010 | AGGAAGAAGATGCGGGTGTG | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
695 | 708 | 0.036388 | GGAAGAAGATGCGGGTGTGA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
696 | 709 | 1.363744 | GAAGAAGATGCGGGTGTGAG | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
697 | 710 | 0.976641 | AAGAAGATGCGGGTGTGAGA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
698 | 711 | 0.976641 | AGAAGATGCGGGTGTGAGAA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
699 | 712 | 1.347707 | AGAAGATGCGGGTGTGAGAAA | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
700 | 713 | 2.151202 | GAAGATGCGGGTGTGAGAAAA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
701 | 714 | 1.813513 | AGATGCGGGTGTGAGAAAAG | 58.186 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
702 | 715 | 1.347707 | AGATGCGGGTGTGAGAAAAGA | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
703 | 716 | 2.151202 | GATGCGGGTGTGAGAAAAGAA | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
704 | 717 | 1.305201 | TGCGGGTGTGAGAAAAGAAC | 58.695 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
705 | 718 | 1.134220 | TGCGGGTGTGAGAAAAGAACT | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
706 | 719 | 2.103432 | TGCGGGTGTGAGAAAAGAACTA | 59.897 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
707 | 720 | 3.135994 | GCGGGTGTGAGAAAAGAACTAA | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
708 | 721 | 3.562557 | GCGGGTGTGAGAAAAGAACTAAA | 59.437 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
709 | 722 | 4.319549 | GCGGGTGTGAGAAAAGAACTAAAG | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 1.85 |
710 | 723 | 4.213482 | CGGGTGTGAGAAAAGAACTAAAGG | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 3.11 |
711 | 724 | 4.519350 | GGGTGTGAGAAAAGAACTAAAGGG | 59.481 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
712 | 725 | 4.023107 | GGTGTGAGAAAAGAACTAAAGGGC | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
713 | 726 | 3.813166 | TGTGAGAAAAGAACTAAAGGGCG | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
714 | 727 | 3.188667 | GTGAGAAAAGAACTAAAGGGCGG | 59.811 | 47.826 | 0.00 | 0.00 | 0.00 | 6.13 |
715 | 728 | 3.181448 | TGAGAAAAGAACTAAAGGGCGGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 5.68 |
716 | 729 | 3.819337 | GAGAAAAGAACTAAAGGGCGGTT | 59.181 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
717 | 730 | 3.568430 | AGAAAAGAACTAAAGGGCGGTTG | 59.432 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
718 | 731 | 2.943036 | AAGAACTAAAGGGCGGTTGA | 57.057 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
719 | 732 | 2.180432 | AGAACTAAAGGGCGGTTGAC | 57.820 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
721 | 734 | 0.604511 | AACTAAAGGGCGGTTGACGG | 60.605 | 55.000 | 0.00 | 0.00 | 44.51 | 4.79 |
722 | 735 | 1.004200 | CTAAAGGGCGGTTGACGGT | 60.004 | 57.895 | 0.00 | 0.00 | 44.51 | 4.83 |
723 | 736 | 0.604511 | CTAAAGGGCGGTTGACGGTT | 60.605 | 55.000 | 0.00 | 0.00 | 44.51 | 4.44 |
724 | 737 | 0.885596 | TAAAGGGCGGTTGACGGTTG | 60.886 | 55.000 | 0.00 | 0.00 | 44.51 | 3.77 |
725 | 738 | 4.636435 | AGGGCGGTTGACGGTTGG | 62.636 | 66.667 | 0.00 | 0.00 | 44.51 | 3.77 |
742 | 755 | 4.143363 | GCGCGCGACCAACCTTAC | 62.143 | 66.667 | 37.18 | 7.60 | 0.00 | 2.34 |
743 | 756 | 2.735478 | CGCGCGACCAACCTTACA | 60.735 | 61.111 | 28.94 | 0.00 | 0.00 | 2.41 |
744 | 757 | 2.098233 | CGCGCGACCAACCTTACAT | 61.098 | 57.895 | 28.94 | 0.00 | 0.00 | 2.29 |
745 | 758 | 1.713830 | GCGCGACCAACCTTACATC | 59.286 | 57.895 | 12.10 | 0.00 | 0.00 | 3.06 |
746 | 759 | 1.017177 | GCGCGACCAACCTTACATCA | 61.017 | 55.000 | 12.10 | 0.00 | 0.00 | 3.07 |
747 | 760 | 0.719465 | CGCGACCAACCTTACATCAC | 59.281 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
748 | 761 | 0.719465 | GCGACCAACCTTACATCACG | 59.281 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
749 | 762 | 1.938016 | GCGACCAACCTTACATCACGT | 60.938 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
750 | 763 | 1.724623 | CGACCAACCTTACATCACGTG | 59.275 | 52.381 | 9.94 | 9.94 | 0.00 | 4.49 |
751 | 764 | 2.073816 | GACCAACCTTACATCACGTGG | 58.926 | 52.381 | 17.00 | 2.57 | 0.00 | 4.94 |
752 | 765 | 1.695242 | ACCAACCTTACATCACGTGGA | 59.305 | 47.619 | 17.00 | 2.69 | 0.00 | 4.02 |
753 | 766 | 2.289444 | ACCAACCTTACATCACGTGGAG | 60.289 | 50.000 | 17.00 | 11.07 | 0.00 | 3.86 |
754 | 767 | 2.346803 | CAACCTTACATCACGTGGAGG | 58.653 | 52.381 | 17.00 | 16.34 | 39.69 | 4.30 |
755 | 768 | 1.640917 | ACCTTACATCACGTGGAGGT | 58.359 | 50.000 | 17.00 | 16.93 | 44.00 | 3.85 |
756 | 769 | 1.275291 | ACCTTACATCACGTGGAGGTG | 59.725 | 52.381 | 17.00 | 11.96 | 42.99 | 4.00 |
763 | 776 | 0.037326 | TCACGTGGAGGTGAAGATGC | 60.037 | 55.000 | 17.00 | 0.00 | 43.55 | 3.91 |
764 | 777 | 0.320683 | CACGTGGAGGTGAAGATGCA | 60.321 | 55.000 | 7.95 | 0.00 | 40.38 | 3.96 |
765 | 778 | 0.396435 | ACGTGGAGGTGAAGATGCAA | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
766 | 779 | 1.081892 | CGTGGAGGTGAAGATGCAAG | 58.918 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
767 | 780 | 1.609061 | CGTGGAGGTGAAGATGCAAGT | 60.609 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
768 | 781 | 2.353704 | CGTGGAGGTGAAGATGCAAGTA | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
769 | 782 | 3.679917 | CGTGGAGGTGAAGATGCAAGTAT | 60.680 | 47.826 | 0.00 | 0.00 | 0.00 | 2.12 |
770 | 783 | 4.265073 | GTGGAGGTGAAGATGCAAGTATT | 58.735 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
788 | 801 | 7.507304 | CAAGTATTGTACTTTACGTCACTTGG | 58.493 | 38.462 | 0.00 | 0.00 | 46.27 | 3.61 |
789 | 802 | 6.161381 | AGTATTGTACTTTACGTCACTTGGG | 58.839 | 40.000 | 0.00 | 0.00 | 34.86 | 4.12 |
790 | 803 | 2.758009 | TGTACTTTACGTCACTTGGGC | 58.242 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
791 | 804 | 2.071540 | GTACTTTACGTCACTTGGGCC | 58.928 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
792 | 805 | 0.470766 | ACTTTACGTCACTTGGGCCA | 59.529 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
793 | 806 | 1.134037 | ACTTTACGTCACTTGGGCCAA | 60.134 | 47.619 | 19.68 | 19.68 | 0.00 | 4.52 |
794 | 807 | 1.535462 | CTTTACGTCACTTGGGCCAAG | 59.465 | 52.381 | 38.15 | 38.15 | 45.85 | 3.61 |
805 | 818 | 4.806640 | CTTGGGCCAAGTGATTGTAATT | 57.193 | 40.909 | 33.43 | 0.00 | 36.79 | 1.40 |
806 | 819 | 5.151297 | CTTGGGCCAAGTGATTGTAATTT | 57.849 | 39.130 | 33.43 | 0.00 | 36.79 | 1.82 |
807 | 820 | 5.550290 | CTTGGGCCAAGTGATTGTAATTTT | 58.450 | 37.500 | 33.43 | 0.00 | 36.79 | 1.82 |
808 | 821 | 5.559148 | TGGGCCAAGTGATTGTAATTTTT | 57.441 | 34.783 | 2.13 | 0.00 | 0.00 | 1.94 |
828 | 841 | 2.296073 | TTTTATGCGGGTTCTTGGGT | 57.704 | 45.000 | 0.00 | 0.00 | 0.00 | 4.51 |
829 | 842 | 1.828979 | TTTATGCGGGTTCTTGGGTC | 58.171 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
830 | 843 | 0.988832 | TTATGCGGGTTCTTGGGTCT | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
831 | 844 | 0.988832 | TATGCGGGTTCTTGGGTCTT | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
832 | 845 | 0.609131 | ATGCGGGTTCTTGGGTCTTG | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
833 | 846 | 1.072505 | GCGGGTTCTTGGGTCTTGA | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
834 | 847 | 0.536460 | GCGGGTTCTTGGGTCTTGAA | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
835 | 848 | 1.523758 | CGGGTTCTTGGGTCTTGAAG | 58.476 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
836 | 849 | 1.071699 | CGGGTTCTTGGGTCTTGAAGA | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
837 | 850 | 2.290323 | CGGGTTCTTGGGTCTTGAAGAT | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
838 | 851 | 3.084786 | GGGTTCTTGGGTCTTGAAGATG | 58.915 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
839 | 852 | 2.489722 | GGTTCTTGGGTCTTGAAGATGC | 59.510 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
840 | 853 | 3.149196 | GTTCTTGGGTCTTGAAGATGCA | 58.851 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
841 | 854 | 3.507162 | TCTTGGGTCTTGAAGATGCAA | 57.493 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
842 | 855 | 3.831323 | TCTTGGGTCTTGAAGATGCAAA | 58.169 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
843 | 856 | 3.569701 | TCTTGGGTCTTGAAGATGCAAAC | 59.430 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
844 | 857 | 1.879380 | TGGGTCTTGAAGATGCAAACG | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 3.60 |
845 | 858 | 1.880027 | GGGTCTTGAAGATGCAAACGT | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
846 | 859 | 2.293399 | GGGTCTTGAAGATGCAAACGTT | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 3.99 |
847 | 860 | 3.500680 | GGGTCTTGAAGATGCAAACGTTA | 59.499 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
848 | 861 | 4.378459 | GGGTCTTGAAGATGCAAACGTTAG | 60.378 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
849 | 862 | 4.213482 | GGTCTTGAAGATGCAAACGTTAGT | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
850 | 863 | 5.277828 | GGTCTTGAAGATGCAAACGTTAGTT | 60.278 | 40.000 | 0.00 | 0.00 | 43.50 | 2.24 |
851 | 864 | 6.073440 | GGTCTTGAAGATGCAAACGTTAGTTA | 60.073 | 38.462 | 0.00 | 0.00 | 40.18 | 2.24 |
852 | 865 | 7.360946 | GGTCTTGAAGATGCAAACGTTAGTTAT | 60.361 | 37.037 | 0.00 | 0.00 | 40.18 | 1.89 |
853 | 866 | 8.015658 | GTCTTGAAGATGCAAACGTTAGTTATT | 58.984 | 33.333 | 0.00 | 0.00 | 40.18 | 1.40 |
854 | 867 | 8.564574 | TCTTGAAGATGCAAACGTTAGTTATTT | 58.435 | 29.630 | 0.00 | 0.00 | 40.18 | 1.40 |
855 | 868 | 9.180678 | CTTGAAGATGCAAACGTTAGTTATTTT | 57.819 | 29.630 | 0.00 | 0.00 | 40.18 | 1.82 |
856 | 869 | 8.500837 | TGAAGATGCAAACGTTAGTTATTTTG | 57.499 | 30.769 | 0.00 | 0.00 | 40.18 | 2.44 |
863 | 876 | 6.741500 | CAAACGTTAGTTATTTTGCATCTGC | 58.258 | 36.000 | 0.00 | 0.00 | 40.18 | 4.26 |
864 | 877 | 6.007936 | AACGTTAGTTATTTTGCATCTGCA | 57.992 | 33.333 | 0.00 | 0.00 | 43.71 | 4.41 |
865 | 878 | 6.620678 | AACGTTAGTTATTTTGCATCTGCAT | 58.379 | 32.000 | 5.58 | 0.00 | 44.33 | 3.96 |
866 | 879 | 7.757526 | AACGTTAGTTATTTTGCATCTGCATA | 58.242 | 30.769 | 5.58 | 0.00 | 44.33 | 3.14 |
867 | 880 | 8.240682 | AACGTTAGTTATTTTGCATCTGCATAA | 58.759 | 29.630 | 5.58 | 8.04 | 44.33 | 1.90 |
909 | 923 | 5.686159 | TTTGCGGGAAAAGTATTTACGAA | 57.314 | 34.783 | 0.00 | 0.00 | 37.28 | 3.85 |
910 | 924 | 5.686159 | TTGCGGGAAAAGTATTTACGAAA | 57.314 | 34.783 | 0.00 | 0.00 | 37.28 | 3.46 |
916 | 1084 | 6.312487 | GGGAAAAGTATTTACGAAAGCTGTC | 58.688 | 40.000 | 0.00 | 0.00 | 37.28 | 3.51 |
939 | 1107 | 3.992427 | GGAATTGCTCTCAAAAGGCAAAG | 59.008 | 43.478 | 3.79 | 0.00 | 46.59 | 2.77 |
940 | 1108 | 4.262164 | GGAATTGCTCTCAAAAGGCAAAGA | 60.262 | 41.667 | 3.79 | 0.00 | 46.59 | 2.52 |
941 | 1109 | 3.996150 | TTGCTCTCAAAAGGCAAAGAG | 57.004 | 42.857 | 0.00 | 0.00 | 41.96 | 2.85 |
942 | 1110 | 3.213206 | TGCTCTCAAAAGGCAAAGAGA | 57.787 | 42.857 | 2.55 | 0.00 | 37.97 | 3.10 |
943 | 1111 | 2.880890 | TGCTCTCAAAAGGCAAAGAGAC | 59.119 | 45.455 | 2.55 | 0.00 | 37.97 | 3.36 |
944 | 1112 | 2.096019 | GCTCTCAAAAGGCAAAGAGACG | 60.096 | 50.000 | 2.55 | 0.00 | 37.97 | 4.18 |
945 | 1113 | 1.873591 | TCTCAAAAGGCAAAGAGACGC | 59.126 | 47.619 | 0.00 | 0.00 | 32.57 | 5.19 |
946 | 1114 | 1.876156 | CTCAAAAGGCAAAGAGACGCT | 59.124 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
1036 | 1204 | 4.434354 | ACTCTCGAGCCCGCCTCT | 62.434 | 66.667 | 7.81 | 0.00 | 38.49 | 3.69 |
1056 | 1251 | 4.516195 | GCCTTCTCCGCCTCGTCC | 62.516 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
1059 | 1254 | 2.754658 | TTCTCCGCCTCGTCCTCC | 60.755 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1060 | 1255 | 3.283812 | TTCTCCGCCTCGTCCTCCT | 62.284 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
1061 | 1256 | 3.213402 | CTCCGCCTCGTCCTCCTC | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
1062 | 1257 | 4.816984 | TCCGCCTCGTCCTCCTCC | 62.817 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1063 | 1258 | 4.824515 | CCGCCTCGTCCTCCTCCT | 62.825 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
1064 | 1259 | 3.213402 | CGCCTCGTCCTCCTCCTC | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 3.71 |
1065 | 1260 | 3.213402 | GCCTCGTCCTCCTCCTCG | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
1066 | 1261 | 2.272797 | CCTCGTCCTCCTCCTCGT | 59.727 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1067 | 1262 | 1.820481 | CCTCGTCCTCCTCCTCGTC | 60.820 | 68.421 | 0.00 | 0.00 | 0.00 | 4.20 |
1068 | 1263 | 2.125229 | TCGTCCTCCTCCTCGTCG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.12 |
1069 | 1264 | 2.436292 | CGTCCTCCTCCTCGTCGT | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
1070 | 1265 | 2.462782 | CGTCCTCCTCCTCGTCGTC | 61.463 | 68.421 | 0.00 | 0.00 | 0.00 | 4.20 |
1152 | 1347 | 4.619227 | ACCAACCCACGCGTCCTG | 62.619 | 66.667 | 9.86 | 2.68 | 0.00 | 3.86 |
1293 | 1488 | 4.467084 | ATCGACCCGCGCATGGTT | 62.467 | 61.111 | 18.60 | 1.82 | 40.61 | 3.67 |
1665 | 1865 | 0.961857 | TGGTAGCGGACGTGAAGCTA | 60.962 | 55.000 | 10.88 | 10.88 | 41.88 | 3.32 |
1923 | 2123 | 2.412323 | CGCTGGCAGTGGCATCATT | 61.412 | 57.895 | 20.91 | 0.00 | 43.71 | 2.57 |
1937 | 2137 | 2.744202 | GCATCATTCTCGGTGTTCTTGT | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1947 | 2147 | 0.042448 | GTGTTCTTGTTGACGACGGC | 60.042 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2190 | 2390 | 2.027285 | TCGGATCTTTGATTGCTCACCA | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
2262 | 2465 | 2.163412 | GCGAATTTGCCAGTCCATGTAA | 59.837 | 45.455 | 6.38 | 0.00 | 0.00 | 2.41 |
2366 | 2570 | 6.674694 | AGATCTCAAACATGTGCTATTCAC | 57.325 | 37.500 | 0.00 | 0.00 | 45.82 | 3.18 |
2509 | 2714 | 6.663093 | ACAGGACATAACATTAAGCAAATCCA | 59.337 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2515 | 2720 | 4.978083 | ACATTAAGCAAATCCAGCAGAG | 57.022 | 40.909 | 0.00 | 0.00 | 0.00 | 3.35 |
2581 | 2815 | 1.440618 | TGAACCACCACCACCATAGT | 58.559 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2582 | 2816 | 1.777878 | TGAACCACCACCACCATAGTT | 59.222 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
2716 | 2952 | 2.384828 | TCTGCAGCCCGAAGAGTAATA | 58.615 | 47.619 | 9.47 | 0.00 | 0.00 | 0.98 |
2798 | 3038 | 8.978472 | AGCCAGTAGATACACTTTTACTTGATA | 58.022 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2807 | 3047 | 9.686683 | ATACACTTTTACTTGATAGCAGGAAAT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
2894 | 3134 | 3.815809 | TCGAATCACCTTTTGTTGGACT | 58.184 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
2942 | 3182 | 5.704515 | GGGAGAAAAGAAGTAACCTGTTACC | 59.295 | 44.000 | 14.80 | 3.22 | 44.79 | 2.85 |
2952 | 3192 | 6.145338 | AGTAACCTGTTACCAGATCATACG | 57.855 | 41.667 | 14.80 | 0.00 | 44.79 | 3.06 |
3006 | 3246 | 8.286191 | ACTTCCTCCATTTCATAATTCTTGTC | 57.714 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3010 | 3250 | 7.065803 | TCCTCCATTTCATAATTCTTGTCGTTC | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
3011 | 3251 | 7.148255 | CCTCCATTTCATAATTCTTGTCGTTCA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3012 | 3252 | 8.105097 | TCCATTTCATAATTCTTGTCGTTCAA | 57.895 | 30.769 | 0.00 | 0.00 | 34.61 | 2.69 |
3023 | 5213 | 8.742554 | ATTCTTGTCGTTCAAATTATGGAAAC | 57.257 | 30.769 | 0.00 | 0.00 | 35.48 | 2.78 |
3042 | 5232 | 5.050023 | GGAAACAAGAGAGTGCTAAACAGAC | 60.050 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3050 | 5240 | 3.846360 | AGTGCTAAACAGACGGATGTAC | 58.154 | 45.455 | 0.00 | 0.00 | 31.70 | 2.90 |
3051 | 5241 | 3.510360 | AGTGCTAAACAGACGGATGTACT | 59.490 | 43.478 | 0.00 | 0.00 | 31.70 | 2.73 |
3052 | 5242 | 3.612860 | GTGCTAAACAGACGGATGTACTG | 59.387 | 47.826 | 0.00 | 0.00 | 37.62 | 2.74 |
3053 | 5243 | 3.187700 | GCTAAACAGACGGATGTACTGG | 58.812 | 50.000 | 0.00 | 0.00 | 36.17 | 4.00 |
3055 | 5245 | 3.314541 | AAACAGACGGATGTACTGGTC | 57.685 | 47.619 | 0.00 | 0.00 | 36.17 | 4.02 |
3057 | 5247 | 2.093106 | ACAGACGGATGTACTGGTCTC | 58.907 | 52.381 | 0.00 | 0.00 | 36.17 | 3.36 |
3058 | 5248 | 1.064208 | CAGACGGATGTACTGGTCTCG | 59.936 | 57.143 | 0.00 | 0.00 | 0.00 | 4.04 |
3060 | 5250 | 1.065928 | CGGATGTACTGGTCTCGGC | 59.934 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
3061 | 5251 | 1.442148 | GGATGTACTGGTCTCGGCC | 59.558 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3062 | 5252 | 1.065928 | GATGTACTGGTCTCGGCCG | 59.934 | 63.158 | 22.12 | 22.12 | 0.00 | 6.13 |
3063 | 5253 | 1.379443 | ATGTACTGGTCTCGGCCGA | 60.379 | 57.895 | 29.03 | 29.03 | 0.00 | 5.54 |
3064 | 5254 | 1.384989 | ATGTACTGGTCTCGGCCGAG | 61.385 | 60.000 | 42.89 | 42.89 | 43.21 | 4.63 |
3065 | 5255 | 2.439701 | TACTGGTCTCGGCCGAGG | 60.440 | 66.667 | 45.31 | 33.75 | 42.20 | 4.63 |
3083 | 5273 | 0.037790 | GGGAGACACAGACACAGCTC | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3116 | 5306 | 6.963049 | AAACCTGCTAAAGTATTCGTACAG | 57.037 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
3121 | 5311 | 5.416083 | TGCTAAAGTATTCGTACAGCACAT | 58.584 | 37.500 | 0.00 | 0.00 | 32.94 | 3.21 |
3122 | 5312 | 6.566141 | TGCTAAAGTATTCGTACAGCACATA | 58.434 | 36.000 | 0.00 | 0.00 | 32.94 | 2.29 |
3123 | 5313 | 6.474427 | TGCTAAAGTATTCGTACAGCACATAC | 59.526 | 38.462 | 0.00 | 0.00 | 32.94 | 2.39 |
3124 | 5314 | 6.696148 | GCTAAAGTATTCGTACAGCACATACT | 59.304 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
3125 | 5315 | 7.096558 | GCTAAAGTATTCGTACAGCACATACTC | 60.097 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
3126 | 5316 | 5.184340 | AGTATTCGTACAGCACATACTCC | 57.816 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3127 | 5317 | 2.953466 | TTCGTACAGCACATACTCCC | 57.047 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3128 | 5318 | 2.139323 | TCGTACAGCACATACTCCCT | 57.861 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3129 | 5319 | 2.022195 | TCGTACAGCACATACTCCCTC | 58.978 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3130 | 5320 | 2.025155 | CGTACAGCACATACTCCCTCT | 58.975 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
3131 | 5321 | 2.223595 | CGTACAGCACATACTCCCTCTG | 60.224 | 54.545 | 0.00 | 0.00 | 0.00 | 3.35 |
3132 | 5322 | 2.238084 | ACAGCACATACTCCCTCTGA | 57.762 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3133 | 5323 | 2.756907 | ACAGCACATACTCCCTCTGAT | 58.243 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
3134 | 5324 | 2.697751 | ACAGCACATACTCCCTCTGATC | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3135 | 5325 | 2.036992 | CAGCACATACTCCCTCTGATCC | 59.963 | 54.545 | 0.00 | 0.00 | 0.00 | 3.36 |
3136 | 5326 | 2.042464 | GCACATACTCCCTCTGATCCA | 58.958 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
3137 | 5327 | 2.636893 | GCACATACTCCCTCTGATCCAT | 59.363 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3138 | 5328 | 3.834813 | GCACATACTCCCTCTGATCCATA | 59.165 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
3139 | 5329 | 4.469227 | GCACATACTCCCTCTGATCCATAT | 59.531 | 45.833 | 0.00 | 0.00 | 0.00 | 1.78 |
3140 | 5330 | 5.046014 | GCACATACTCCCTCTGATCCATATT | 60.046 | 44.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3141 | 5331 | 6.404708 | CACATACTCCCTCTGATCCATATTG | 58.595 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3142 | 5332 | 6.212187 | CACATACTCCCTCTGATCCATATTGA | 59.788 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
3143 | 5333 | 6.964679 | ACATACTCCCTCTGATCCATATTGAT | 59.035 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
3144 | 5334 | 7.460402 | ACATACTCCCTCTGATCCATATTGATT | 59.540 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3145 | 5335 | 6.124316 | ACTCCCTCTGATCCATATTGATTG | 57.876 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
3146 | 5336 | 5.848369 | ACTCCCTCTGATCCATATTGATTGA | 59.152 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3147 | 5337 | 6.119240 | TCCCTCTGATCCATATTGATTGAC | 57.881 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3148 | 5338 | 4.934001 | CCCTCTGATCCATATTGATTGACG | 59.066 | 45.833 | 0.00 | 0.00 | 0.00 | 4.35 |
3149 | 5339 | 4.391216 | CCTCTGATCCATATTGATTGACGC | 59.609 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
3150 | 5340 | 4.959723 | TCTGATCCATATTGATTGACGCA | 58.040 | 39.130 | 0.00 | 0.00 | 0.00 | 5.24 |
3151 | 5341 | 4.751600 | TCTGATCCATATTGATTGACGCAC | 59.248 | 41.667 | 0.00 | 0.00 | 0.00 | 5.34 |
3152 | 5342 | 4.450053 | TGATCCATATTGATTGACGCACA | 58.550 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
3153 | 5343 | 4.273235 | TGATCCATATTGATTGACGCACAC | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
3154 | 5344 | 3.872696 | TCCATATTGATTGACGCACACT | 58.127 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 5.845985 | TCAAAATAAGCTGAGACTTGTCG | 57.154 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
12 | 13 | 8.854614 | ACTATTCAAAATAAGCTGAGACTTGT | 57.145 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
84 | 85 | 9.719355 | AAAATGCCCTTAACCTATTTAAAACTG | 57.281 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
142 | 143 | 9.301153 | GGGTTGCAAATATTCACTAAGTAATTG | 57.699 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
190 | 191 | 8.992073 | GCAAGTCAAATTATTGTTTCTCCAAAT | 58.008 | 29.630 | 0.00 | 0.00 | 37.79 | 2.32 |
228 | 229 | 8.422577 | AGCTAAATTGTCCCTTGATAAAAAGT | 57.577 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
257 | 270 | 3.624777 | ACCCATGCTAATGACCTTTCTG | 58.375 | 45.455 | 0.00 | 0.00 | 35.67 | 3.02 |
259 | 272 | 4.016444 | TGAACCCATGCTAATGACCTTTC | 58.984 | 43.478 | 0.00 | 0.00 | 35.67 | 2.62 |
277 | 290 | 8.784043 | CACCCCTATAATTAAGCTACAATGAAC | 58.216 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
278 | 291 | 8.499406 | ACACCCCTATAATTAAGCTACAATGAA | 58.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
279 | 292 | 8.041143 | ACACCCCTATAATTAAGCTACAATGA | 57.959 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
280 | 293 | 8.691661 | AACACCCCTATAATTAAGCTACAATG | 57.308 | 34.615 | 0.00 | 0.00 | 0.00 | 2.82 |
282 | 295 | 9.841295 | CTTAACACCCCTATAATTAAGCTACAA | 57.159 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
283 | 296 | 8.434392 | CCTTAACACCCCTATAATTAAGCTACA | 58.566 | 37.037 | 0.00 | 0.00 | 33.44 | 2.74 |
284 | 297 | 7.881751 | CCCTTAACACCCCTATAATTAAGCTAC | 59.118 | 40.741 | 0.00 | 0.00 | 33.44 | 3.58 |
285 | 298 | 7.017850 | CCCCTTAACACCCCTATAATTAAGCTA | 59.982 | 40.741 | 0.00 | 0.00 | 33.44 | 3.32 |
286 | 299 | 6.183361 | CCCCTTAACACCCCTATAATTAAGCT | 60.183 | 42.308 | 0.00 | 0.00 | 33.44 | 3.74 |
287 | 300 | 6.008331 | CCCCTTAACACCCCTATAATTAAGC | 58.992 | 44.000 | 0.00 | 0.00 | 33.44 | 3.09 |
288 | 301 | 6.549242 | CCCCCTTAACACCCCTATAATTAAG | 58.451 | 44.000 | 0.00 | 0.00 | 34.19 | 1.85 |
289 | 302 | 6.533639 | CCCCCTTAACACCCCTATAATTAA | 57.466 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
312 | 325 | 4.614036 | CACCCACCCAACCCCACC | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
313 | 326 | 4.614036 | CCACCCACCCAACCCCAC | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
316 | 329 | 4.614036 | CACCCACCCACCCAACCC | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 4.11 |
317 | 330 | 4.614036 | CCACCCACCCACCCAACC | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 3.77 |
318 | 331 | 4.614036 | CCCACCCACCCACCCAAC | 62.614 | 72.222 | 0.00 | 0.00 | 0.00 | 3.77 |
344 | 357 | 2.360350 | ATCACAGCCAAGCCACCG | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 4.94 |
345 | 358 | 1.303561 | TCATCACAGCCAAGCCACC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
346 | 359 | 1.878775 | GTCATCACAGCCAAGCCAC | 59.121 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
347 | 360 | 1.672030 | CGTCATCACAGCCAAGCCA | 60.672 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
348 | 361 | 2.401766 | CCGTCATCACAGCCAAGCC | 61.402 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
349 | 362 | 3.044059 | GCCGTCATCACAGCCAAGC | 62.044 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
350 | 363 | 2.743752 | CGCCGTCATCACAGCCAAG | 61.744 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
351 | 364 | 2.723586 | TTCGCCGTCATCACAGCCAA | 62.724 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
352 | 365 | 2.723586 | TTTCGCCGTCATCACAGCCA | 62.724 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
353 | 366 | 1.573829 | TTTTCGCCGTCATCACAGCC | 61.574 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
354 | 367 | 0.452784 | GTTTTCGCCGTCATCACAGC | 60.453 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
355 | 368 | 0.179250 | CGTTTTCGCCGTCATCACAG | 60.179 | 55.000 | 0.00 | 0.00 | 36.22 | 3.66 |
356 | 369 | 1.561717 | CCGTTTTCGCCGTCATCACA | 61.562 | 55.000 | 0.00 | 0.00 | 42.58 | 3.58 |
357 | 370 | 1.131826 | CCGTTTTCGCCGTCATCAC | 59.868 | 57.895 | 0.00 | 0.00 | 42.58 | 3.06 |
358 | 371 | 2.673114 | GCCGTTTTCGCCGTCATCA | 61.673 | 57.895 | 0.00 | 0.00 | 42.58 | 3.07 |
359 | 372 | 2.097728 | GCCGTTTTCGCCGTCATC | 59.902 | 61.111 | 0.00 | 0.00 | 42.58 | 2.92 |
360 | 373 | 2.255172 | TTGCCGTTTTCGCCGTCAT | 61.255 | 52.632 | 0.00 | 0.00 | 42.58 | 3.06 |
361 | 374 | 2.895865 | TTGCCGTTTTCGCCGTCA | 60.896 | 55.556 | 0.00 | 0.00 | 42.58 | 4.35 |
362 | 375 | 2.426261 | GTTGCCGTTTTCGCCGTC | 60.426 | 61.111 | 0.00 | 0.00 | 42.58 | 4.79 |
363 | 376 | 4.302172 | CGTTGCCGTTTTCGCCGT | 62.302 | 61.111 | 0.00 | 0.00 | 42.58 | 5.68 |
364 | 377 | 3.904233 | CTCGTTGCCGTTTTCGCCG | 62.904 | 63.158 | 0.00 | 0.00 | 42.58 | 6.46 |
365 | 378 | 2.127383 | CTCGTTGCCGTTTTCGCC | 60.127 | 61.111 | 0.00 | 0.00 | 42.58 | 5.54 |
366 | 379 | 2.127383 | CCTCGTTGCCGTTTTCGC | 60.127 | 61.111 | 0.00 | 0.00 | 42.58 | 4.70 |
367 | 380 | 1.203313 | GTCCTCGTTGCCGTTTTCG | 59.797 | 57.895 | 0.00 | 0.00 | 43.67 | 3.46 |
368 | 381 | 1.203313 | CGTCCTCGTTGCCGTTTTC | 59.797 | 57.895 | 0.00 | 0.00 | 35.01 | 2.29 |
369 | 382 | 0.810823 | TTCGTCCTCGTTGCCGTTTT | 60.811 | 50.000 | 0.00 | 0.00 | 38.33 | 2.43 |
370 | 383 | 1.227321 | TTCGTCCTCGTTGCCGTTT | 60.227 | 52.632 | 0.00 | 0.00 | 38.33 | 3.60 |
401 | 414 | 2.618709 | CCTTATTTTCCACCGCTCCATC | 59.381 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
410 | 423 | 4.698304 | TCGTGGATCAACCTTATTTTCCAC | 59.302 | 41.667 | 9.33 | 9.33 | 46.13 | 4.02 |
411 | 424 | 4.698304 | GTCGTGGATCAACCTTATTTTCCA | 59.302 | 41.667 | 0.00 | 0.00 | 39.86 | 3.53 |
413 | 426 | 4.390909 | ACGTCGTGGATCAACCTTATTTTC | 59.609 | 41.667 | 0.00 | 0.00 | 39.86 | 2.29 |
420 | 433 | 1.374252 | GCACGTCGTGGATCAACCT | 60.374 | 57.895 | 25.70 | 0.00 | 39.86 | 3.50 |
422 | 435 | 2.769617 | CGCACGTCGTGGATCAAC | 59.230 | 61.111 | 25.70 | 7.82 | 33.64 | 3.18 |
471 | 484 | 4.280019 | AACCCGACCCCAAGCACC | 62.280 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
472 | 485 | 2.983592 | CAACCCGACCCCAAGCAC | 60.984 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
473 | 486 | 3.494254 | ACAACCCGACCCCAAGCA | 61.494 | 61.111 | 0.00 | 0.00 | 0.00 | 3.91 |
474 | 487 | 2.983592 | CACAACCCGACCCCAAGC | 60.984 | 66.667 | 0.00 | 0.00 | 0.00 | 4.01 |
475 | 488 | 2.282180 | CCACAACCCGACCCCAAG | 60.282 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
476 | 489 | 4.589675 | GCCACAACCCGACCCCAA | 62.590 | 66.667 | 0.00 | 0.00 | 0.00 | 4.12 |
481 | 494 | 4.612412 | TCGTGGCCACAACCCGAC | 62.612 | 66.667 | 34.16 | 6.15 | 30.64 | 4.79 |
482 | 495 | 4.612412 | GTCGTGGCCACAACCCGA | 62.612 | 66.667 | 34.16 | 22.73 | 32.37 | 5.14 |
485 | 498 | 4.922026 | ACCGTCGTGGCCACAACC | 62.922 | 66.667 | 34.16 | 19.67 | 43.94 | 3.77 |
486 | 499 | 3.645975 | CACCGTCGTGGCCACAAC | 61.646 | 66.667 | 34.16 | 26.37 | 43.94 | 3.32 |
494 | 507 | 2.247267 | GTTTTCGCCACCGTCGTG | 59.753 | 61.111 | 0.00 | 0.00 | 39.91 | 4.35 |
495 | 508 | 3.332409 | CGTTTTCGCCACCGTCGT | 61.332 | 61.111 | 0.00 | 0.00 | 36.22 | 4.34 |
496 | 509 | 4.067016 | CCGTTTTCGCCACCGTCG | 62.067 | 66.667 | 0.00 | 0.00 | 42.58 | 5.12 |
497 | 510 | 4.379143 | GCCGTTTTCGCCACCGTC | 62.379 | 66.667 | 0.00 | 0.00 | 42.58 | 4.79 |
506 | 519 | 4.394078 | GTTCCCGCCGCCGTTTTC | 62.394 | 66.667 | 0.00 | 0.00 | 0.00 | 2.29 |
517 | 530 | 2.890474 | CTGCCCGATTCGTTCCCG | 60.890 | 66.667 | 5.20 | 0.00 | 0.00 | 5.14 |
518 | 531 | 3.202706 | GCTGCCCGATTCGTTCCC | 61.203 | 66.667 | 5.20 | 0.00 | 0.00 | 3.97 |
519 | 532 | 3.564027 | CGCTGCCCGATTCGTTCC | 61.564 | 66.667 | 5.20 | 0.00 | 40.02 | 3.62 |
520 | 533 | 3.564027 | CCGCTGCCCGATTCGTTC | 61.564 | 66.667 | 5.20 | 0.00 | 40.02 | 3.95 |
542 | 555 | 4.351938 | GCGTTTTTCGGCCACCCC | 62.352 | 66.667 | 2.24 | 0.00 | 40.26 | 4.95 |
549 | 562 | 2.518949 | CATGAATCAGGCGTTTTTCGG | 58.481 | 47.619 | 0.00 | 0.00 | 40.26 | 4.30 |
550 | 563 | 2.518949 | CCATGAATCAGGCGTTTTTCG | 58.481 | 47.619 | 0.00 | 0.00 | 43.12 | 3.46 |
551 | 564 | 2.262211 | GCCATGAATCAGGCGTTTTTC | 58.738 | 47.619 | 7.71 | 0.00 | 41.70 | 2.29 |
552 | 565 | 2.368655 | GCCATGAATCAGGCGTTTTT | 57.631 | 45.000 | 7.71 | 0.00 | 41.70 | 1.94 |
559 | 572 | 1.825191 | CCCCACGCCATGAATCAGG | 60.825 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
560 | 573 | 2.484062 | GCCCCACGCCATGAATCAG | 61.484 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
561 | 574 | 2.440065 | GCCCCACGCCATGAATCA | 60.440 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
562 | 575 | 3.585990 | CGCCCCACGCCATGAATC | 61.586 | 66.667 | 0.00 | 0.00 | 33.16 | 2.52 |
563 | 576 | 3.420206 | ATCGCCCCACGCCATGAAT | 62.420 | 57.895 | 0.00 | 0.00 | 43.23 | 2.57 |
564 | 577 | 4.108299 | ATCGCCCCACGCCATGAA | 62.108 | 61.111 | 0.00 | 0.00 | 43.23 | 2.57 |
565 | 578 | 4.545706 | GATCGCCCCACGCCATGA | 62.546 | 66.667 | 0.00 | 0.00 | 43.23 | 3.07 |
570 | 583 | 3.861263 | GTTTCGATCGCCCCACGC | 61.861 | 66.667 | 11.09 | 0.00 | 43.23 | 5.34 |
571 | 584 | 3.550992 | CGTTTCGATCGCCCCACG | 61.551 | 66.667 | 11.09 | 11.52 | 45.62 | 4.94 |
572 | 585 | 3.861263 | GCGTTTCGATCGCCCCAC | 61.861 | 66.667 | 19.80 | 3.11 | 46.61 | 4.61 |
579 | 592 | 3.183323 | TTCCGCCGCGTTTCGATC | 61.183 | 61.111 | 12.58 | 0.00 | 41.67 | 3.69 |
580 | 593 | 3.484547 | GTTCCGCCGCGTTTCGAT | 61.485 | 61.111 | 12.58 | 0.00 | 41.67 | 3.59 |
583 | 596 | 3.652000 | TTGGTTCCGCCGCGTTTC | 61.652 | 61.111 | 12.58 | 1.07 | 41.21 | 2.78 |
584 | 597 | 3.956317 | GTTGGTTCCGCCGCGTTT | 61.956 | 61.111 | 12.58 | 0.00 | 41.21 | 3.60 |
590 | 603 | 3.110178 | CTCGTCGTTGGTTCCGCC | 61.110 | 66.667 | 0.00 | 0.00 | 37.90 | 6.13 |
591 | 604 | 3.110178 | CCTCGTCGTTGGTTCCGC | 61.110 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
592 | 605 | 2.431942 | CCCTCGTCGTTGGTTCCG | 60.432 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
593 | 606 | 1.666872 | CACCCTCGTCGTTGGTTCC | 60.667 | 63.158 | 5.83 | 0.00 | 0.00 | 3.62 |
594 | 607 | 1.666872 | CCACCCTCGTCGTTGGTTC | 60.667 | 63.158 | 5.83 | 0.00 | 0.00 | 3.62 |
595 | 608 | 2.424302 | CCACCCTCGTCGTTGGTT | 59.576 | 61.111 | 5.83 | 0.00 | 0.00 | 3.67 |
596 | 609 | 2.841044 | ACCACCCTCGTCGTTGGT | 60.841 | 61.111 | 3.14 | 3.14 | 0.00 | 3.67 |
597 | 610 | 2.357034 | CACCACCCTCGTCGTTGG | 60.357 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
598 | 611 | 2.357034 | CCACCACCCTCGTCGTTG | 60.357 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
599 | 612 | 2.522436 | TCCACCACCCTCGTCGTT | 60.522 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
600 | 613 | 2.989824 | CTCCACCACCCTCGTCGT | 60.990 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
601 | 614 | 4.436998 | GCTCCACCACCCTCGTCG | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 5.12 |
602 | 615 | 4.436998 | CGCTCCACCACCCTCGTC | 62.437 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
612 | 625 | 4.899239 | CAGATCCGGCCGCTCCAC | 62.899 | 72.222 | 22.85 | 8.76 | 34.01 | 4.02 |
635 | 648 | 4.830765 | TACCATGCCGCTGTCGCC | 62.831 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
636 | 649 | 3.564027 | GTACCATGCCGCTGTCGC | 61.564 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
637 | 650 | 3.254654 | CGTACCATGCCGCTGTCG | 61.255 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
638 | 651 | 2.890474 | CCGTACCATGCCGCTGTC | 60.890 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
639 | 652 | 3.702048 | ACCGTACCATGCCGCTGT | 61.702 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
640 | 653 | 3.195002 | CACCGTACCATGCCGCTG | 61.195 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
641 | 654 | 4.467084 | CCACCGTACCATGCCGCT | 62.467 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
646 | 659 | 4.849310 | CCCGCCCACCGTACCATG | 62.849 | 72.222 | 0.00 | 0.00 | 34.38 | 3.66 |
664 | 677 | 3.605749 | TTCTTCCTCCCGCCGCTTG | 62.606 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
665 | 678 | 3.316573 | CTTCTTCCTCCCGCCGCTT | 62.317 | 63.158 | 0.00 | 0.00 | 0.00 | 4.68 |
666 | 679 | 3.775654 | CTTCTTCCTCCCGCCGCT | 61.776 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
667 | 680 | 3.095347 | ATCTTCTTCCTCCCGCCGC | 62.095 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
668 | 681 | 1.227380 | CATCTTCTTCCTCCCGCCG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 6.46 |
669 | 682 | 1.524849 | GCATCTTCTTCCTCCCGCC | 60.525 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
670 | 683 | 1.884926 | CGCATCTTCTTCCTCCCGC | 60.885 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
671 | 684 | 1.227380 | CCGCATCTTCTTCCTCCCG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
672 | 685 | 1.147153 | CCCGCATCTTCTTCCTCCC | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
673 | 686 | 0.462759 | CACCCGCATCTTCTTCCTCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
674 | 687 | 0.250513 | ACACCCGCATCTTCTTCCTC | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
675 | 688 | 0.036010 | CACACCCGCATCTTCTTCCT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
676 | 689 | 0.036388 | TCACACCCGCATCTTCTTCC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
677 | 690 | 1.066858 | TCTCACACCCGCATCTTCTTC | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
678 | 691 | 0.976641 | TCTCACACCCGCATCTTCTT | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
679 | 692 | 0.976641 | TTCTCACACCCGCATCTTCT | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
680 | 693 | 1.808411 | TTTCTCACACCCGCATCTTC | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
681 | 694 | 2.154462 | CTTTTCTCACACCCGCATCTT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
682 | 695 | 1.347707 | TCTTTTCTCACACCCGCATCT | 59.652 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
683 | 696 | 1.808411 | TCTTTTCTCACACCCGCATC | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
684 | 697 | 1.880027 | GTTCTTTTCTCACACCCGCAT | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
685 | 698 | 1.134220 | AGTTCTTTTCTCACACCCGCA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
686 | 699 | 1.594331 | AGTTCTTTTCTCACACCCGC | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
687 | 700 | 4.213482 | CCTTTAGTTCTTTTCTCACACCCG | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 5.28 |
688 | 701 | 4.519350 | CCCTTTAGTTCTTTTCTCACACCC | 59.481 | 45.833 | 0.00 | 0.00 | 0.00 | 4.61 |
689 | 702 | 4.023107 | GCCCTTTAGTTCTTTTCTCACACC | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 4.16 |
690 | 703 | 4.319549 | CGCCCTTTAGTTCTTTTCTCACAC | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
691 | 704 | 3.813166 | CGCCCTTTAGTTCTTTTCTCACA | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
692 | 705 | 3.188667 | CCGCCCTTTAGTTCTTTTCTCAC | 59.811 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
693 | 706 | 3.181448 | ACCGCCCTTTAGTTCTTTTCTCA | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
694 | 707 | 3.409570 | ACCGCCCTTTAGTTCTTTTCTC | 58.590 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
695 | 708 | 3.503800 | ACCGCCCTTTAGTTCTTTTCT | 57.496 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
696 | 709 | 3.566742 | TCAACCGCCCTTTAGTTCTTTTC | 59.433 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
697 | 710 | 3.317149 | GTCAACCGCCCTTTAGTTCTTTT | 59.683 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
698 | 711 | 2.882761 | GTCAACCGCCCTTTAGTTCTTT | 59.117 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
699 | 712 | 2.501261 | GTCAACCGCCCTTTAGTTCTT | 58.499 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
700 | 713 | 1.607251 | CGTCAACCGCCCTTTAGTTCT | 60.607 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
701 | 714 | 0.794473 | CGTCAACCGCCCTTTAGTTC | 59.206 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
702 | 715 | 0.604511 | CCGTCAACCGCCCTTTAGTT | 60.605 | 55.000 | 0.00 | 0.00 | 34.38 | 2.24 |
703 | 716 | 1.004200 | CCGTCAACCGCCCTTTAGT | 60.004 | 57.895 | 0.00 | 0.00 | 34.38 | 2.24 |
704 | 717 | 0.604511 | AACCGTCAACCGCCCTTTAG | 60.605 | 55.000 | 0.00 | 0.00 | 34.38 | 1.85 |
705 | 718 | 0.885596 | CAACCGTCAACCGCCCTTTA | 60.886 | 55.000 | 0.00 | 0.00 | 34.38 | 1.85 |
706 | 719 | 2.190841 | CAACCGTCAACCGCCCTTT | 61.191 | 57.895 | 0.00 | 0.00 | 34.38 | 3.11 |
707 | 720 | 2.593436 | CAACCGTCAACCGCCCTT | 60.593 | 61.111 | 0.00 | 0.00 | 34.38 | 3.95 |
708 | 721 | 4.636435 | CCAACCGTCAACCGCCCT | 62.636 | 66.667 | 0.00 | 0.00 | 34.38 | 5.19 |
725 | 738 | 4.143363 | GTAAGGTTGGTCGCGCGC | 62.143 | 66.667 | 27.95 | 23.91 | 0.00 | 6.86 |
726 | 739 | 2.020836 | GATGTAAGGTTGGTCGCGCG | 62.021 | 60.000 | 26.76 | 26.76 | 0.00 | 6.86 |
727 | 740 | 1.017177 | TGATGTAAGGTTGGTCGCGC | 61.017 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
728 | 741 | 0.719465 | GTGATGTAAGGTTGGTCGCG | 59.281 | 55.000 | 0.00 | 0.00 | 0.00 | 5.87 |
729 | 742 | 0.719465 | CGTGATGTAAGGTTGGTCGC | 59.281 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
730 | 743 | 1.724623 | CACGTGATGTAAGGTTGGTCG | 59.275 | 52.381 | 10.90 | 0.00 | 0.00 | 4.79 |
731 | 744 | 2.073816 | CCACGTGATGTAAGGTTGGTC | 58.926 | 52.381 | 19.30 | 0.00 | 0.00 | 4.02 |
732 | 745 | 1.695242 | TCCACGTGATGTAAGGTTGGT | 59.305 | 47.619 | 19.30 | 0.00 | 0.00 | 3.67 |
733 | 746 | 2.346803 | CTCCACGTGATGTAAGGTTGG | 58.653 | 52.381 | 19.30 | 0.00 | 0.00 | 3.77 |
734 | 747 | 2.289444 | ACCTCCACGTGATGTAAGGTTG | 60.289 | 50.000 | 19.30 | 0.00 | 41.01 | 3.77 |
735 | 748 | 1.975680 | ACCTCCACGTGATGTAAGGTT | 59.024 | 47.619 | 19.30 | 4.19 | 41.01 | 3.50 |
736 | 749 | 1.275291 | CACCTCCACGTGATGTAAGGT | 59.725 | 52.381 | 19.30 | 17.10 | 43.30 | 3.50 |
737 | 750 | 1.548719 | TCACCTCCACGTGATGTAAGG | 59.451 | 52.381 | 19.30 | 16.48 | 37.85 | 2.69 |
738 | 751 | 3.056821 | TCTTCACCTCCACGTGATGTAAG | 60.057 | 47.826 | 19.30 | 12.19 | 42.20 | 2.34 |
739 | 752 | 2.894765 | TCTTCACCTCCACGTGATGTAA | 59.105 | 45.455 | 19.30 | 2.66 | 42.20 | 2.41 |
740 | 753 | 2.521126 | TCTTCACCTCCACGTGATGTA | 58.479 | 47.619 | 19.30 | 2.94 | 42.20 | 2.29 |
741 | 754 | 1.338107 | TCTTCACCTCCACGTGATGT | 58.662 | 50.000 | 19.30 | 7.96 | 42.20 | 3.06 |
742 | 755 | 2.274437 | CATCTTCACCTCCACGTGATG | 58.726 | 52.381 | 19.30 | 9.78 | 42.20 | 3.07 |
743 | 756 | 1.406069 | GCATCTTCACCTCCACGTGAT | 60.406 | 52.381 | 19.30 | 0.00 | 42.20 | 3.06 |
744 | 757 | 0.037326 | GCATCTTCACCTCCACGTGA | 60.037 | 55.000 | 19.30 | 2.03 | 40.98 | 4.35 |
745 | 758 | 0.320683 | TGCATCTTCACCTCCACGTG | 60.321 | 55.000 | 9.08 | 9.08 | 34.93 | 4.49 |
746 | 759 | 0.396435 | TTGCATCTTCACCTCCACGT | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
747 | 760 | 1.081892 | CTTGCATCTTCACCTCCACG | 58.918 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
748 | 761 | 2.191128 | ACTTGCATCTTCACCTCCAC | 57.809 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
749 | 762 | 4.263462 | ACAATACTTGCATCTTCACCTCCA | 60.263 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
750 | 763 | 4.265073 | ACAATACTTGCATCTTCACCTCC | 58.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
751 | 764 | 6.109359 | AGTACAATACTTGCATCTTCACCTC | 58.891 | 40.000 | 0.00 | 0.00 | 34.86 | 3.85 |
752 | 765 | 6.054860 | AGTACAATACTTGCATCTTCACCT | 57.945 | 37.500 | 0.00 | 0.00 | 34.86 | 4.00 |
753 | 766 | 6.743575 | AAGTACAATACTTGCATCTTCACC | 57.256 | 37.500 | 0.46 | 0.00 | 46.58 | 4.02 |
765 | 778 | 6.161381 | CCCAAGTGACGTAAAGTACAATACT | 58.839 | 40.000 | 0.00 | 0.00 | 41.73 | 2.12 |
766 | 779 | 5.163923 | GCCCAAGTGACGTAAAGTACAATAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
767 | 780 | 4.931002 | GCCCAAGTGACGTAAAGTACAATA | 59.069 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
768 | 781 | 3.749609 | GCCCAAGTGACGTAAAGTACAAT | 59.250 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
769 | 782 | 3.132925 | GCCCAAGTGACGTAAAGTACAA | 58.867 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
770 | 783 | 2.548493 | GGCCCAAGTGACGTAAAGTACA | 60.548 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
771 | 784 | 2.071540 | GGCCCAAGTGACGTAAAGTAC | 58.928 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
772 | 785 | 1.693062 | TGGCCCAAGTGACGTAAAGTA | 59.307 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
773 | 786 | 0.470766 | TGGCCCAAGTGACGTAAAGT | 59.529 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
774 | 787 | 1.535462 | CTTGGCCCAAGTGACGTAAAG | 59.465 | 52.381 | 15.63 | 0.00 | 36.79 | 1.85 |
775 | 788 | 1.600023 | CTTGGCCCAAGTGACGTAAA | 58.400 | 50.000 | 15.63 | 0.00 | 36.79 | 2.01 |
776 | 789 | 3.315765 | CTTGGCCCAAGTGACGTAA | 57.684 | 52.632 | 15.63 | 0.00 | 36.79 | 3.18 |
784 | 797 | 4.806640 | AATTACAATCACTTGGCCCAAG | 57.193 | 40.909 | 21.95 | 21.95 | 45.85 | 3.61 |
785 | 798 | 5.559148 | AAAATTACAATCACTTGGCCCAA | 57.441 | 34.783 | 0.00 | 0.00 | 36.64 | 4.12 |
786 | 799 | 5.559148 | AAAAATTACAATCACTTGGCCCA | 57.441 | 34.783 | 0.00 | 0.00 | 36.64 | 5.36 |
808 | 821 | 2.559231 | GACCCAAGAACCCGCATAAAAA | 59.441 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
809 | 822 | 2.164338 | GACCCAAGAACCCGCATAAAA | 58.836 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
810 | 823 | 1.353022 | AGACCCAAGAACCCGCATAAA | 59.647 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
811 | 824 | 0.988832 | AGACCCAAGAACCCGCATAA | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
812 | 825 | 0.988832 | AAGACCCAAGAACCCGCATA | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
813 | 826 | 0.609131 | CAAGACCCAAGAACCCGCAT | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 4.73 |
814 | 827 | 1.228124 | CAAGACCCAAGAACCCGCA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
815 | 828 | 0.536460 | TTCAAGACCCAAGAACCCGC | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
816 | 829 | 1.071699 | TCTTCAAGACCCAAGAACCCG | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
817 | 830 | 2.951229 | TCTTCAAGACCCAAGAACCC | 57.049 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
818 | 831 | 2.489722 | GCATCTTCAAGACCCAAGAACC | 59.510 | 50.000 | 0.00 | 0.00 | 32.40 | 3.62 |
819 | 832 | 3.149196 | TGCATCTTCAAGACCCAAGAAC | 58.851 | 45.455 | 0.00 | 0.00 | 32.40 | 3.01 |
820 | 833 | 3.507162 | TGCATCTTCAAGACCCAAGAA | 57.493 | 42.857 | 0.00 | 0.00 | 32.40 | 2.52 |
821 | 834 | 3.507162 | TTGCATCTTCAAGACCCAAGA | 57.493 | 42.857 | 0.00 | 0.00 | 33.18 | 3.02 |
822 | 835 | 3.610114 | CGTTTGCATCTTCAAGACCCAAG | 60.610 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
823 | 836 | 2.293122 | CGTTTGCATCTTCAAGACCCAA | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
824 | 837 | 1.879380 | CGTTTGCATCTTCAAGACCCA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
825 | 838 | 1.880027 | ACGTTTGCATCTTCAAGACCC | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
826 | 839 | 3.626028 | AACGTTTGCATCTTCAAGACC | 57.374 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
827 | 840 | 5.344207 | ACTAACGTTTGCATCTTCAAGAC | 57.656 | 39.130 | 5.91 | 0.00 | 0.00 | 3.01 |
828 | 841 | 7.667043 | ATAACTAACGTTTGCATCTTCAAGA | 57.333 | 32.000 | 5.91 | 0.00 | 34.59 | 3.02 |
829 | 842 | 8.728088 | AAATAACTAACGTTTGCATCTTCAAG | 57.272 | 30.769 | 5.91 | 0.00 | 34.59 | 3.02 |
830 | 843 | 8.963130 | CAAAATAACTAACGTTTGCATCTTCAA | 58.037 | 29.630 | 5.91 | 0.00 | 34.59 | 2.69 |
831 | 844 | 8.500837 | CAAAATAACTAACGTTTGCATCTTCA | 57.499 | 30.769 | 5.91 | 0.00 | 34.59 | 3.02 |
839 | 852 | 6.741500 | GCAGATGCAAAATAACTAACGTTTG | 58.258 | 36.000 | 5.91 | 7.25 | 41.59 | 2.93 |
840 | 853 | 6.927933 | GCAGATGCAAAATAACTAACGTTT | 57.072 | 33.333 | 5.91 | 0.00 | 41.59 | 3.60 |
850 | 863 | 8.948145 | AAAGCATTTTTATGCAGATGCAAAATA | 58.052 | 25.926 | 12.13 | 9.09 | 46.30 | 1.40 |
851 | 864 | 7.822658 | AAAGCATTTTTATGCAGATGCAAAAT | 58.177 | 26.923 | 12.13 | 10.35 | 46.30 | 1.82 |
852 | 865 | 7.204496 | AAAGCATTTTTATGCAGATGCAAAA | 57.796 | 28.000 | 12.13 | 8.46 | 46.30 | 2.44 |
853 | 866 | 6.804770 | AAAGCATTTTTATGCAGATGCAAA | 57.195 | 29.167 | 12.13 | 1.78 | 46.30 | 3.68 |
868 | 881 | 5.234116 | CGCAAAAGTGGTTAGAAAAGCATTT | 59.766 | 36.000 | 0.00 | 0.00 | 44.37 | 2.32 |
869 | 882 | 4.744631 | CGCAAAAGTGGTTAGAAAAGCATT | 59.255 | 37.500 | 0.00 | 0.00 | 44.37 | 3.56 |
890 | 903 | 4.093514 | GCTTTCGTAAATACTTTTCCCGC | 58.906 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
901 | 914 | 4.671766 | GCAATTCCGACAGCTTTCGTAAAT | 60.672 | 41.667 | 20.01 | 15.48 | 37.29 | 1.40 |
909 | 923 | 1.002430 | TGAGAGCAATTCCGACAGCTT | 59.998 | 47.619 | 0.00 | 0.00 | 37.48 | 3.74 |
910 | 924 | 0.610174 | TGAGAGCAATTCCGACAGCT | 59.390 | 50.000 | 0.00 | 0.00 | 40.60 | 4.24 |
916 | 1084 | 1.541147 | TGCCTTTTGAGAGCAATTCCG | 59.459 | 47.619 | 0.00 | 0.00 | 33.25 | 4.30 |
939 | 1107 | 0.736053 | AACATCTCTCGGAGCGTCTC | 59.264 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
940 | 1108 | 0.453793 | CAACATCTCTCGGAGCGTCT | 59.546 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
941 | 1109 | 0.171455 | ACAACATCTCTCGGAGCGTC | 59.829 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
942 | 1110 | 0.603569 | AACAACATCTCTCGGAGCGT | 59.396 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
943 | 1111 | 1.272781 | GAACAACATCTCTCGGAGCG | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
944 | 1112 | 1.135373 | TCGAACAACATCTCTCGGAGC | 60.135 | 52.381 | 0.00 | 0.00 | 32.25 | 4.70 |
945 | 1113 | 2.162608 | AGTCGAACAACATCTCTCGGAG | 59.837 | 50.000 | 0.00 | 0.00 | 32.25 | 4.63 |
946 | 1114 | 2.160205 | AGTCGAACAACATCTCTCGGA | 58.840 | 47.619 | 0.00 | 0.00 | 32.25 | 4.55 |
1018 | 1186 | 4.200283 | GAGGCGGGCTCGAGAGTG | 62.200 | 72.222 | 18.75 | 5.17 | 39.00 | 3.51 |
1056 | 1251 | 1.649390 | CCAGTGACGACGAGGAGGAG | 61.649 | 65.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1059 | 1254 | 2.179517 | GCCAGTGACGACGAGGAG | 59.820 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1060 | 1255 | 3.733960 | CGCCAGTGACGACGAGGA | 61.734 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1061 | 1256 | 3.948086 | GACGCCAGTGACGACGAGG | 62.948 | 68.421 | 5.64 | 0.00 | 0.00 | 4.63 |
1062 | 1257 | 2.502080 | GACGCCAGTGACGACGAG | 60.502 | 66.667 | 5.64 | 0.00 | 0.00 | 4.18 |
1065 | 1260 | 3.948086 | CTCCGACGCCAGTGACGAC | 62.948 | 68.421 | 5.64 | 0.00 | 0.00 | 4.34 |
1066 | 1261 | 3.733960 | CTCCGACGCCAGTGACGA | 61.734 | 66.667 | 5.64 | 0.00 | 0.00 | 4.20 |
1067 | 1262 | 4.778415 | CCTCCGACGCCAGTGACG | 62.778 | 72.222 | 0.00 | 0.00 | 0.00 | 4.35 |
1412 | 1607 | 0.529378 | CACCTGGCAATGGAGAAAGC | 59.471 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1665 | 1865 | 0.969149 | TCTTGCTCACGTCCATGAGT | 59.031 | 50.000 | 0.00 | 0.00 | 46.65 | 3.41 |
1750 | 1950 | 3.429141 | GGCGACGTCGACCTCAGA | 61.429 | 66.667 | 39.74 | 0.00 | 42.67 | 3.27 |
1906 | 2106 | 1.035932 | AGAATGATGCCACTGCCAGC | 61.036 | 55.000 | 0.00 | 0.00 | 36.33 | 4.85 |
1923 | 2123 | 1.406180 | TCGTCAACAAGAACACCGAGA | 59.594 | 47.619 | 0.00 | 0.00 | 0.00 | 4.04 |
1937 | 2137 | 0.597898 | TTCGTCATTGCCGTCGTCAA | 60.598 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1947 | 2147 | 1.136147 | GCTGCAGGCTTCGTCATTG | 59.864 | 57.895 | 17.12 | 0.00 | 38.06 | 2.82 |
2190 | 2390 | 0.109781 | GTGCGTCGGTCATTTGCATT | 60.110 | 50.000 | 0.00 | 0.00 | 37.93 | 3.56 |
2262 | 2465 | 2.093973 | ACGCTAGACAGCTGCTAAACAT | 60.094 | 45.455 | 15.27 | 0.00 | 46.26 | 2.71 |
2289 | 2493 | 3.641436 | TCTCTGCAACTCTGAACCAACTA | 59.359 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2509 | 2714 | 7.717568 | ACAGTCGAAACATATATAACTCTGCT | 58.282 | 34.615 | 0.00 | 0.00 | 0.00 | 4.24 |
2567 | 2801 | 2.039746 | TCCTGAAACTATGGTGGTGGTG | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2581 | 2815 | 4.610333 | TGGTCTAGAGTAGCATCCTGAAA | 58.390 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2582 | 2816 | 4.251103 | TGGTCTAGAGTAGCATCCTGAA | 57.749 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2678 | 2914 | 2.290367 | CAGATGTTTTCTGCGTGTTGGA | 59.710 | 45.455 | 0.00 | 0.00 | 45.16 | 3.53 |
2807 | 3047 | 5.221106 | GCATCCAGATAAAAATGCAGCACTA | 60.221 | 40.000 | 0.00 | 0.00 | 43.10 | 2.74 |
2984 | 3224 | 6.414732 | ACGACAAGAATTATGAAATGGAGGA | 58.585 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3006 | 3246 | 7.535258 | CACTCTCTTGTTTCCATAATTTGAACG | 59.465 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
3010 | 3250 | 6.917533 | AGCACTCTCTTGTTTCCATAATTTG | 58.082 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3011 | 3251 | 8.635765 | TTAGCACTCTCTTGTTTCCATAATTT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
3012 | 3252 | 8.515414 | GTTTAGCACTCTCTTGTTTCCATAATT | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3022 | 5212 | 3.553096 | CCGTCTGTTTAGCACTCTCTTGT | 60.553 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3023 | 5213 | 2.989840 | CCGTCTGTTTAGCACTCTCTTG | 59.010 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3042 | 5232 | 1.065928 | GCCGAGACCAGTACATCCG | 59.934 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
3055 | 5245 | 3.827898 | GTGTCTCCCTCGGCCGAG | 61.828 | 72.222 | 41.90 | 41.90 | 41.63 | 4.63 |
3057 | 5247 | 4.135153 | CTGTGTCTCCCTCGGCCG | 62.135 | 72.222 | 22.12 | 22.12 | 0.00 | 6.13 |
3058 | 5248 | 2.680352 | TCTGTGTCTCCCTCGGCC | 60.680 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
3060 | 5250 | 1.179174 | TGTGTCTGTGTCTCCCTCGG | 61.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3061 | 5251 | 0.242286 | CTGTGTCTGTGTCTCCCTCG | 59.758 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3062 | 5252 | 0.037790 | GCTGTGTCTGTGTCTCCCTC | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3063 | 5253 | 0.470833 | AGCTGTGTCTGTGTCTCCCT | 60.471 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3064 | 5254 | 0.037790 | GAGCTGTGTCTGTGTCTCCC | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3065 | 5255 | 0.676184 | TGAGCTGTGTCTGTGTCTCC | 59.324 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3066 | 5256 | 2.029560 | TCATGAGCTGTGTCTGTGTCTC | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3067 | 5257 | 1.966354 | TCATGAGCTGTGTCTGTGTCT | 59.034 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3068 | 5258 | 2.445565 | TCATGAGCTGTGTCTGTGTC | 57.554 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3116 | 5306 | 2.042464 | TGGATCAGAGGGAGTATGTGC | 58.958 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
3121 | 5311 | 7.018769 | TCAATCAATATGGATCAGAGGGAGTA | 58.981 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3122 | 5312 | 5.848369 | TCAATCAATATGGATCAGAGGGAGT | 59.152 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3123 | 5313 | 6.171921 | GTCAATCAATATGGATCAGAGGGAG | 58.828 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3124 | 5314 | 5.279657 | CGTCAATCAATATGGATCAGAGGGA | 60.280 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3125 | 5315 | 4.934001 | CGTCAATCAATATGGATCAGAGGG | 59.066 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3126 | 5316 | 4.391216 | GCGTCAATCAATATGGATCAGAGG | 59.609 | 45.833 | 0.00 | 2.64 | 0.00 | 3.69 |
3127 | 5317 | 4.992951 | TGCGTCAATCAATATGGATCAGAG | 59.007 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
3128 | 5318 | 4.751600 | GTGCGTCAATCAATATGGATCAGA | 59.248 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
3129 | 5319 | 4.512571 | TGTGCGTCAATCAATATGGATCAG | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3130 | 5320 | 4.273235 | GTGTGCGTCAATCAATATGGATCA | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3131 | 5321 | 4.512944 | AGTGTGCGTCAATCAATATGGATC | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
3132 | 5322 | 4.454678 | AGTGTGCGTCAATCAATATGGAT | 58.545 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3133 | 5323 | 3.872696 | AGTGTGCGTCAATCAATATGGA | 58.127 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.