Multiple sequence alignment - TraesCS2B01G249000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G249000 chr2B 100.000 3155 0 0 1 3155 256330908 256327754 0.000000e+00 5827.0
1 TraesCS2B01G249000 chr2B 79.323 266 48 7 1 263 49294195 49294456 2.500000e-41 180.0
2 TraesCS2B01G249000 chr2D 95.837 2042 62 10 978 3010 202570123 202568096 0.000000e+00 3278.0
3 TraesCS2B01G249000 chr2D 90.311 289 16 3 1 277 202570746 202570458 4.970000e-98 368.0
4 TraesCS2B01G249000 chr2D 84.259 108 11 4 3014 3121 202566142 202566041 2.000000e-17 100.0
5 TraesCS2B01G249000 chr2A 92.657 2138 91 24 871 2963 229675705 229673589 0.000000e+00 3018.0
6 TraesCS2B01G249000 chr2A 86.395 294 28 3 1 282 229716464 229716171 8.500000e-81 311.0
7 TraesCS2B01G249000 chr3A 78.338 337 47 12 1 312 131456583 131456918 8.930000e-46 195.0
8 TraesCS2B01G249000 chr7D 81.897 232 37 5 1 229 517593676 517593447 1.160000e-44 191.0
9 TraesCS2B01G249000 chr6B 87.421 159 20 0 70 228 536014532 536014374 1.930000e-42 183.0
10 TraesCS2B01G249000 chr7B 81.116 233 38 4 1 228 550671882 550671651 6.950000e-42 182.0
11 TraesCS2B01G249000 chr1A 82.967 182 30 1 1 181 256917849 256918030 2.520000e-36 163.0
12 TraesCS2B01G249000 chr4A 78.388 273 42 11 1 263 109446862 109446597 9.060000e-36 161.0
13 TraesCS2B01G249000 chr1B 95.349 43 2 0 266 308 210757419 210757377 5.650000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G249000 chr2B 256327754 256330908 3154 True 5827.000000 5827 100.000000 1 3155 1 chr2B.!!$R1 3154
1 TraesCS2B01G249000 chr2D 202566041 202570746 4705 True 1248.666667 3278 90.135667 1 3121 3 chr2D.!!$R1 3120
2 TraesCS2B01G249000 chr2A 229673589 229675705 2116 True 3018.000000 3018 92.657000 871 2963 1 chr2A.!!$R1 2092


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 707 0.03601 AGGAAGAAGATGCGGGTGTG 60.036 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2390 0.109781 GTGCGTCGGTCATTTGCATT 60.11 50.0 0.0 0.0 37.93 3.56 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.201181 AGCTAGCACGACAAGTCTCAG 59.799 52.381 18.83 0.00 0.00 3.35
84 85 9.780413 GAAGACTCTGTTTAATGATTTTGGATC 57.220 33.333 0.00 0.00 0.00 3.36
142 143 6.867816 TCAAATGATGTTGGCTTTTACATGAC 59.132 34.615 0.00 0.00 35.24 3.06
182 183 3.012518 TGCAACCCAACCAACATTTTTG 58.987 40.909 0.00 0.00 0.00 2.44
190 191 7.621796 ACCCAACCAACATTTTTGTTTTACTA 58.378 30.769 0.00 0.00 0.00 1.82
257 270 7.568199 TTATCAAGGGACAATTTAGCTTAGC 57.432 36.000 0.00 0.00 0.00 3.09
259 272 4.943705 TCAAGGGACAATTTAGCTTAGCAG 59.056 41.667 7.07 0.00 0.00 4.24
277 290 2.360165 GCAGAAAGGTCATTAGCATGGG 59.640 50.000 0.00 0.00 0.00 4.00
278 291 3.624777 CAGAAAGGTCATTAGCATGGGT 58.375 45.455 0.00 0.00 0.00 4.51
279 292 4.019174 CAGAAAGGTCATTAGCATGGGTT 58.981 43.478 0.00 0.00 0.00 4.11
280 293 4.096984 CAGAAAGGTCATTAGCATGGGTTC 59.903 45.833 0.00 0.00 0.00 3.62
281 294 3.737559 AAGGTCATTAGCATGGGTTCA 57.262 42.857 0.00 0.00 0.00 3.18
282 295 3.959495 AGGTCATTAGCATGGGTTCAT 57.041 42.857 0.00 0.00 0.00 2.57
283 296 4.255510 AGGTCATTAGCATGGGTTCATT 57.744 40.909 0.00 0.00 0.00 2.57
284 297 3.956199 AGGTCATTAGCATGGGTTCATTG 59.044 43.478 0.00 0.00 0.00 2.82
285 298 3.701040 GGTCATTAGCATGGGTTCATTGT 59.299 43.478 0.00 0.00 0.00 2.71
286 299 4.887071 GGTCATTAGCATGGGTTCATTGTA 59.113 41.667 0.00 0.00 0.00 2.41
287 300 5.009010 GGTCATTAGCATGGGTTCATTGTAG 59.991 44.000 0.00 0.00 0.00 2.74
288 301 4.580167 TCATTAGCATGGGTTCATTGTAGC 59.420 41.667 0.00 0.00 0.00 3.58
289 302 2.814805 AGCATGGGTTCATTGTAGCT 57.185 45.000 0.00 0.00 0.00 3.32
290 303 3.091633 AGCATGGGTTCATTGTAGCTT 57.908 42.857 0.00 0.00 28.42 3.74
291 304 4.235079 AGCATGGGTTCATTGTAGCTTA 57.765 40.909 0.00 0.00 28.42 3.09
292 305 4.599041 AGCATGGGTTCATTGTAGCTTAA 58.401 39.130 0.00 0.00 28.42 1.85
293 306 5.203528 AGCATGGGTTCATTGTAGCTTAAT 58.796 37.500 0.00 0.00 28.42 1.40
294 307 5.658190 AGCATGGGTTCATTGTAGCTTAATT 59.342 36.000 0.00 0.00 28.42 1.40
295 308 6.833416 AGCATGGGTTCATTGTAGCTTAATTA 59.167 34.615 0.00 0.00 28.42 1.40
296 309 7.506938 AGCATGGGTTCATTGTAGCTTAATTAT 59.493 33.333 0.00 0.00 28.42 1.28
297 310 8.792633 GCATGGGTTCATTGTAGCTTAATTATA 58.207 33.333 0.00 0.00 0.00 0.98
299 312 8.918202 TGGGTTCATTGTAGCTTAATTATAGG 57.082 34.615 0.00 0.00 0.00 2.57
300 313 7.942341 TGGGTTCATTGTAGCTTAATTATAGGG 59.058 37.037 0.00 0.00 0.00 3.53
301 314 7.393515 GGGTTCATTGTAGCTTAATTATAGGGG 59.606 40.741 0.00 0.00 0.00 4.79
302 315 7.942894 GGTTCATTGTAGCTTAATTATAGGGGT 59.057 37.037 0.00 0.00 0.00 4.95
303 316 8.784043 GTTCATTGTAGCTTAATTATAGGGGTG 58.216 37.037 0.00 0.00 0.00 4.61
304 317 8.041143 TCATTGTAGCTTAATTATAGGGGTGT 57.959 34.615 0.00 0.00 0.00 4.16
305 318 8.499406 TCATTGTAGCTTAATTATAGGGGTGTT 58.501 33.333 0.00 0.00 0.00 3.32
306 319 9.787435 CATTGTAGCTTAATTATAGGGGTGTTA 57.213 33.333 0.00 0.00 0.00 2.41
308 321 9.841295 TTGTAGCTTAATTATAGGGGTGTTAAG 57.159 33.333 0.00 0.00 36.14 1.85
309 322 8.434392 TGTAGCTTAATTATAGGGGTGTTAAGG 58.566 37.037 0.00 0.00 34.54 2.69
310 323 6.849151 AGCTTAATTATAGGGGTGTTAAGGG 58.151 40.000 0.00 0.00 34.54 3.95
311 324 6.008331 GCTTAATTATAGGGGTGTTAAGGGG 58.992 44.000 0.00 0.00 34.54 4.79
312 325 6.533639 TTAATTATAGGGGTGTTAAGGGGG 57.466 41.667 0.00 0.00 0.00 5.40
329 342 4.614036 GGTGGGGTTGGGTGGGTG 62.614 72.222 0.00 0.00 0.00 4.61
330 343 4.614036 GTGGGGTTGGGTGGGTGG 62.614 72.222 0.00 0.00 0.00 4.61
333 346 4.614036 GGGTTGGGTGGGTGGGTG 62.614 72.222 0.00 0.00 0.00 4.61
334 347 4.614036 GGTTGGGTGGGTGGGTGG 62.614 72.222 0.00 0.00 0.00 4.61
335 348 4.614036 GTTGGGTGGGTGGGTGGG 62.614 72.222 0.00 0.00 0.00 4.61
361 374 2.360350 CGGTGGCTTGGCTGTGAT 60.360 61.111 0.00 0.00 0.00 3.06
362 375 2.693762 CGGTGGCTTGGCTGTGATG 61.694 63.158 0.00 0.00 0.00 3.07
363 376 1.303561 GGTGGCTTGGCTGTGATGA 60.304 57.895 0.00 0.00 0.00 2.92
364 377 1.589716 GGTGGCTTGGCTGTGATGAC 61.590 60.000 0.00 0.00 0.00 3.06
365 378 1.672030 TGGCTTGGCTGTGATGACG 60.672 57.895 0.00 0.00 0.00 4.35
366 379 2.401766 GGCTTGGCTGTGATGACGG 61.402 63.158 0.00 0.00 0.00 4.79
393 406 2.431942 CAACGAGGACGAACCGGG 60.432 66.667 6.32 0.00 44.74 5.73
420 433 2.285083 CGATGGAGCGGTGGAAAATAA 58.715 47.619 0.00 0.00 0.00 1.40
422 435 2.122783 TGGAGCGGTGGAAAATAAGG 57.877 50.000 0.00 0.00 0.00 2.69
423 436 1.353022 TGGAGCGGTGGAAAATAAGGT 59.647 47.619 0.00 0.00 0.00 3.50
424 437 2.224917 TGGAGCGGTGGAAAATAAGGTT 60.225 45.455 0.00 0.00 0.00 3.50
427 440 3.694566 GAGCGGTGGAAAATAAGGTTGAT 59.305 43.478 0.00 0.00 0.00 2.57
428 441 3.694566 AGCGGTGGAAAATAAGGTTGATC 59.305 43.478 0.00 0.00 0.00 2.92
430 443 4.013728 CGGTGGAAAATAAGGTTGATCCA 58.986 43.478 0.00 0.00 39.02 3.41
440 453 2.431771 TTGATCCACGACGTGCGG 60.432 61.111 22.46 10.27 46.49 5.69
441 454 3.925362 TTGATCCACGACGTGCGGG 62.925 63.158 22.46 9.50 46.49 6.13
488 501 4.280019 GGTGCTTGGGGTCGGGTT 62.280 66.667 0.00 0.00 0.00 4.11
489 502 2.983592 GTGCTTGGGGTCGGGTTG 60.984 66.667 0.00 0.00 0.00 3.77
490 503 3.494254 TGCTTGGGGTCGGGTTGT 61.494 61.111 0.00 0.00 0.00 3.32
491 504 2.983592 GCTTGGGGTCGGGTTGTG 60.984 66.667 0.00 0.00 0.00 3.33
492 505 2.282180 CTTGGGGTCGGGTTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
493 506 4.589675 TTGGGGTCGGGTTGTGGC 62.590 66.667 0.00 0.00 0.00 5.01
498 511 4.612412 GTCGGGTTGTGGCCACGA 62.612 66.667 30.07 26.57 0.00 4.35
499 512 4.612412 TCGGGTTGTGGCCACGAC 62.612 66.667 38.50 38.50 43.38 4.34
502 515 4.922026 GGTTGTGGCCACGACGGT 62.922 66.667 38.25 0.00 44.70 4.83
503 516 3.645975 GTTGTGGCCACGACGGTG 61.646 66.667 34.94 0.00 43.99 4.94
511 524 2.247267 CACGACGGTGGCGAAAAC 59.753 61.111 0.00 0.00 40.58 2.43
512 525 3.332409 ACGACGGTGGCGAAAACG 61.332 61.111 0.00 0.00 0.00 3.60
513 526 4.067016 CGACGGTGGCGAAAACGG 62.067 66.667 0.27 0.00 0.00 4.44
514 527 4.379143 GACGGTGGCGAAAACGGC 62.379 66.667 9.08 9.08 0.00 5.68
523 536 4.394078 GAAAACGGCGGCGGGAAC 62.394 66.667 35.05 19.03 0.00 3.62
535 548 3.202706 GGGAACGAATCGGGCAGC 61.203 66.667 7.80 0.00 0.00 5.25
536 549 3.564027 GGAACGAATCGGGCAGCG 61.564 66.667 7.80 0.00 0.00 5.18
537 550 3.564027 GAACGAATCGGGCAGCGG 61.564 66.667 7.80 0.00 0.00 5.52
557 570 4.351938 GCGGGGTGGCCGAAAAAC 62.352 66.667 0.00 0.00 0.00 2.43
558 571 4.032987 CGGGGTGGCCGAAAAACG 62.033 66.667 0.00 0.00 42.18 3.60
559 572 4.351938 GGGGTGGCCGAAAAACGC 62.352 66.667 0.00 0.00 41.07 4.84
560 573 4.351938 GGGTGGCCGAAAAACGCC 62.352 66.667 0.00 0.00 41.07 5.68
561 574 3.292159 GGTGGCCGAAAAACGCCT 61.292 61.111 0.00 0.00 41.07 5.52
562 575 2.050442 GTGGCCGAAAAACGCCTG 60.050 61.111 0.00 0.00 41.07 4.85
563 576 2.203224 TGGCCGAAAAACGCCTGA 60.203 55.556 0.00 0.00 41.07 3.86
564 577 1.602323 TGGCCGAAAAACGCCTGAT 60.602 52.632 0.00 0.00 41.07 2.90
565 578 1.175983 TGGCCGAAAAACGCCTGATT 61.176 50.000 0.00 0.00 41.07 2.57
566 579 0.456142 GGCCGAAAAACGCCTGATTC 60.456 55.000 0.00 0.00 41.07 2.52
567 580 0.239879 GCCGAAAAACGCCTGATTCA 59.760 50.000 0.00 0.00 41.07 2.57
568 581 1.135402 GCCGAAAAACGCCTGATTCAT 60.135 47.619 0.00 0.00 41.07 2.57
569 582 2.518949 CCGAAAAACGCCTGATTCATG 58.481 47.619 0.00 0.00 41.07 3.07
570 583 2.518949 CGAAAAACGCCTGATTCATGG 58.481 47.619 0.00 0.00 34.51 3.66
571 584 2.262211 GAAAAACGCCTGATTCATGGC 58.738 47.619 13.85 13.85 45.25 4.40
575 588 3.113745 GCCTGATTCATGGCGTGG 58.886 61.111 6.90 0.00 39.71 4.94
576 589 2.484062 GCCTGATTCATGGCGTGGG 61.484 63.158 6.90 0.57 39.71 4.61
577 590 1.825191 CCTGATTCATGGCGTGGGG 60.825 63.158 6.90 0.00 0.00 4.96
578 591 2.440065 TGATTCATGGCGTGGGGC 60.440 61.111 6.90 0.00 42.51 5.80
579 592 3.585990 GATTCATGGCGTGGGGCG 61.586 66.667 6.90 0.00 44.92 6.13
580 593 4.108299 ATTCATGGCGTGGGGCGA 62.108 61.111 6.90 0.00 44.92 5.54
581 594 3.420206 ATTCATGGCGTGGGGCGAT 62.420 57.895 6.90 0.00 44.92 4.58
582 595 4.545706 TCATGGCGTGGGGCGATC 62.546 66.667 6.90 0.00 44.92 3.69
587 600 3.861263 GCGTGGGGCGATCGAAAC 61.861 66.667 21.57 7.85 44.77 2.78
588 601 3.550992 CGTGGGGCGATCGAAACG 61.551 66.667 21.57 17.22 44.77 3.60
596 609 3.183323 GATCGAAACGCGGCGGAA 61.183 61.111 27.37 7.09 41.33 4.30
597 610 3.415955 GATCGAAACGCGGCGGAAC 62.416 63.158 27.37 14.98 41.33 3.62
600 613 3.652000 GAAACGCGGCGGAACCAA 61.652 61.111 27.37 0.00 39.03 3.67
601 614 3.867226 GAAACGCGGCGGAACCAAC 62.867 63.158 27.37 6.76 39.03 3.77
607 620 3.110178 GGCGGAACCAACGACGAG 61.110 66.667 0.00 0.00 38.86 4.18
608 621 3.110178 GCGGAACCAACGACGAGG 61.110 66.667 0.00 5.65 0.00 4.63
609 622 2.431942 CGGAACCAACGACGAGGG 60.432 66.667 0.00 4.82 0.00 4.30
610 623 2.739132 GGAACCAACGACGAGGGT 59.261 61.111 0.00 5.54 36.19 4.34
611 624 1.666872 GGAACCAACGACGAGGGTG 60.667 63.158 14.18 1.77 34.51 4.61
612 625 1.666872 GAACCAACGACGAGGGTGG 60.667 63.158 14.18 12.00 34.51 4.61
613 626 2.373434 GAACCAACGACGAGGGTGGT 62.373 60.000 13.20 13.20 42.12 4.16
614 627 2.357034 CCAACGACGAGGGTGGTG 60.357 66.667 0.00 0.00 35.12 4.17
615 628 2.357034 CAACGACGAGGGTGGTGG 60.357 66.667 0.00 0.00 35.12 4.61
616 629 2.522436 AACGACGAGGGTGGTGGA 60.522 61.111 0.00 0.00 35.12 4.02
617 630 2.571216 AACGACGAGGGTGGTGGAG 61.571 63.158 0.00 0.00 35.12 3.86
618 631 4.436998 CGACGAGGGTGGTGGAGC 62.437 72.222 0.00 0.00 0.00 4.70
619 632 4.436998 GACGAGGGTGGTGGAGCG 62.437 72.222 0.00 0.00 0.00 5.03
629 642 4.899239 GTGGAGCGGCCGGATCTG 62.899 72.222 29.38 0.00 40.66 2.90
653 666 3.564027 GCGACAGCGGCATGGTAC 61.564 66.667 1.45 0.00 38.16 3.34
654 667 3.254654 CGACAGCGGCATGGTACG 61.255 66.667 1.45 2.90 0.00 3.67
655 668 2.890474 GACAGCGGCATGGTACGG 60.890 66.667 1.45 0.00 0.00 4.02
656 669 3.659089 GACAGCGGCATGGTACGGT 62.659 63.158 1.45 0.00 41.98 4.83
658 671 4.467084 AGCGGCATGGTACGGTGG 62.467 66.667 1.45 0.00 39.55 4.61
663 676 4.849310 CATGGTACGGTGGGCGGG 62.849 72.222 0.00 0.00 0.00 6.13
681 694 4.082523 CAAGCGGCGGGAGGAAGA 62.083 66.667 9.78 0.00 0.00 2.87
682 695 3.319198 AAGCGGCGGGAGGAAGAA 61.319 61.111 9.78 0.00 0.00 2.52
683 696 3.316573 AAGCGGCGGGAGGAAGAAG 62.317 63.158 9.78 0.00 0.00 2.85
684 697 3.771160 GCGGCGGGAGGAAGAAGA 61.771 66.667 9.78 0.00 0.00 2.87
685 698 3.095347 GCGGCGGGAGGAAGAAGAT 62.095 63.158 9.78 0.00 0.00 2.40
686 699 1.227380 CGGCGGGAGGAAGAAGATG 60.227 63.158 0.00 0.00 0.00 2.90
687 700 1.524849 GGCGGGAGGAAGAAGATGC 60.525 63.158 0.00 0.00 0.00 3.91
688 701 1.884926 GCGGGAGGAAGAAGATGCG 60.885 63.158 0.00 0.00 0.00 4.73
689 702 1.227380 CGGGAGGAAGAAGATGCGG 60.227 63.158 0.00 0.00 0.00 5.69
690 703 1.147153 GGGAGGAAGAAGATGCGGG 59.853 63.158 0.00 0.00 0.00 6.13
691 704 1.627297 GGGAGGAAGAAGATGCGGGT 61.627 60.000 0.00 0.00 0.00 5.28
692 705 0.462759 GGAGGAAGAAGATGCGGGTG 60.463 60.000 0.00 0.00 0.00 4.61
693 706 0.250513 GAGGAAGAAGATGCGGGTGT 59.749 55.000 0.00 0.00 0.00 4.16
694 707 0.036010 AGGAAGAAGATGCGGGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
695 708 0.036388 GGAAGAAGATGCGGGTGTGA 60.036 55.000 0.00 0.00 0.00 3.58
696 709 1.363744 GAAGAAGATGCGGGTGTGAG 58.636 55.000 0.00 0.00 0.00 3.51
697 710 0.976641 AAGAAGATGCGGGTGTGAGA 59.023 50.000 0.00 0.00 0.00 3.27
698 711 0.976641 AGAAGATGCGGGTGTGAGAA 59.023 50.000 0.00 0.00 0.00 2.87
699 712 1.347707 AGAAGATGCGGGTGTGAGAAA 59.652 47.619 0.00 0.00 0.00 2.52
700 713 2.151202 GAAGATGCGGGTGTGAGAAAA 58.849 47.619 0.00 0.00 0.00 2.29
701 714 1.813513 AGATGCGGGTGTGAGAAAAG 58.186 50.000 0.00 0.00 0.00 2.27
702 715 1.347707 AGATGCGGGTGTGAGAAAAGA 59.652 47.619 0.00 0.00 0.00 2.52
703 716 2.151202 GATGCGGGTGTGAGAAAAGAA 58.849 47.619 0.00 0.00 0.00 2.52
704 717 1.305201 TGCGGGTGTGAGAAAAGAAC 58.695 50.000 0.00 0.00 0.00 3.01
705 718 1.134220 TGCGGGTGTGAGAAAAGAACT 60.134 47.619 0.00 0.00 0.00 3.01
706 719 2.103432 TGCGGGTGTGAGAAAAGAACTA 59.897 45.455 0.00 0.00 0.00 2.24
707 720 3.135994 GCGGGTGTGAGAAAAGAACTAA 58.864 45.455 0.00 0.00 0.00 2.24
708 721 3.562557 GCGGGTGTGAGAAAAGAACTAAA 59.437 43.478 0.00 0.00 0.00 1.85
709 722 4.319549 GCGGGTGTGAGAAAAGAACTAAAG 60.320 45.833 0.00 0.00 0.00 1.85
710 723 4.213482 CGGGTGTGAGAAAAGAACTAAAGG 59.787 45.833 0.00 0.00 0.00 3.11
711 724 4.519350 GGGTGTGAGAAAAGAACTAAAGGG 59.481 45.833 0.00 0.00 0.00 3.95
712 725 4.023107 GGTGTGAGAAAAGAACTAAAGGGC 60.023 45.833 0.00 0.00 0.00 5.19
713 726 3.813166 TGTGAGAAAAGAACTAAAGGGCG 59.187 43.478 0.00 0.00 0.00 6.13
714 727 3.188667 GTGAGAAAAGAACTAAAGGGCGG 59.811 47.826 0.00 0.00 0.00 6.13
715 728 3.181448 TGAGAAAAGAACTAAAGGGCGGT 60.181 43.478 0.00 0.00 0.00 5.68
716 729 3.819337 GAGAAAAGAACTAAAGGGCGGTT 59.181 43.478 0.00 0.00 0.00 4.44
717 730 3.568430 AGAAAAGAACTAAAGGGCGGTTG 59.432 43.478 0.00 0.00 0.00 3.77
718 731 2.943036 AAGAACTAAAGGGCGGTTGA 57.057 45.000 0.00 0.00 0.00 3.18
719 732 2.180432 AGAACTAAAGGGCGGTTGAC 57.820 50.000 0.00 0.00 0.00 3.18
721 734 0.604511 AACTAAAGGGCGGTTGACGG 60.605 55.000 0.00 0.00 44.51 4.79
722 735 1.004200 CTAAAGGGCGGTTGACGGT 60.004 57.895 0.00 0.00 44.51 4.83
723 736 0.604511 CTAAAGGGCGGTTGACGGTT 60.605 55.000 0.00 0.00 44.51 4.44
724 737 0.885596 TAAAGGGCGGTTGACGGTTG 60.886 55.000 0.00 0.00 44.51 3.77
725 738 4.636435 AGGGCGGTTGACGGTTGG 62.636 66.667 0.00 0.00 44.51 3.77
742 755 4.143363 GCGCGCGACCAACCTTAC 62.143 66.667 37.18 7.60 0.00 2.34
743 756 2.735478 CGCGCGACCAACCTTACA 60.735 61.111 28.94 0.00 0.00 2.41
744 757 2.098233 CGCGCGACCAACCTTACAT 61.098 57.895 28.94 0.00 0.00 2.29
745 758 1.713830 GCGCGACCAACCTTACATC 59.286 57.895 12.10 0.00 0.00 3.06
746 759 1.017177 GCGCGACCAACCTTACATCA 61.017 55.000 12.10 0.00 0.00 3.07
747 760 0.719465 CGCGACCAACCTTACATCAC 59.281 55.000 0.00 0.00 0.00 3.06
748 761 0.719465 GCGACCAACCTTACATCACG 59.281 55.000 0.00 0.00 0.00 4.35
749 762 1.938016 GCGACCAACCTTACATCACGT 60.938 52.381 0.00 0.00 0.00 4.49
750 763 1.724623 CGACCAACCTTACATCACGTG 59.275 52.381 9.94 9.94 0.00 4.49
751 764 2.073816 GACCAACCTTACATCACGTGG 58.926 52.381 17.00 2.57 0.00 4.94
752 765 1.695242 ACCAACCTTACATCACGTGGA 59.305 47.619 17.00 2.69 0.00 4.02
753 766 2.289444 ACCAACCTTACATCACGTGGAG 60.289 50.000 17.00 11.07 0.00 3.86
754 767 2.346803 CAACCTTACATCACGTGGAGG 58.653 52.381 17.00 16.34 39.69 4.30
755 768 1.640917 ACCTTACATCACGTGGAGGT 58.359 50.000 17.00 16.93 44.00 3.85
756 769 1.275291 ACCTTACATCACGTGGAGGTG 59.725 52.381 17.00 11.96 42.99 4.00
763 776 0.037326 TCACGTGGAGGTGAAGATGC 60.037 55.000 17.00 0.00 43.55 3.91
764 777 0.320683 CACGTGGAGGTGAAGATGCA 60.321 55.000 7.95 0.00 40.38 3.96
765 778 0.396435 ACGTGGAGGTGAAGATGCAA 59.604 50.000 0.00 0.00 0.00 4.08
766 779 1.081892 CGTGGAGGTGAAGATGCAAG 58.918 55.000 0.00 0.00 0.00 4.01
767 780 1.609061 CGTGGAGGTGAAGATGCAAGT 60.609 52.381 0.00 0.00 0.00 3.16
768 781 2.353704 CGTGGAGGTGAAGATGCAAGTA 60.354 50.000 0.00 0.00 0.00 2.24
769 782 3.679917 CGTGGAGGTGAAGATGCAAGTAT 60.680 47.826 0.00 0.00 0.00 2.12
770 783 4.265073 GTGGAGGTGAAGATGCAAGTATT 58.735 43.478 0.00 0.00 0.00 1.89
788 801 7.507304 CAAGTATTGTACTTTACGTCACTTGG 58.493 38.462 0.00 0.00 46.27 3.61
789 802 6.161381 AGTATTGTACTTTACGTCACTTGGG 58.839 40.000 0.00 0.00 34.86 4.12
790 803 2.758009 TGTACTTTACGTCACTTGGGC 58.242 47.619 0.00 0.00 0.00 5.36
791 804 2.071540 GTACTTTACGTCACTTGGGCC 58.928 52.381 0.00 0.00 0.00 5.80
792 805 0.470766 ACTTTACGTCACTTGGGCCA 59.529 50.000 0.00 0.00 0.00 5.36
793 806 1.134037 ACTTTACGTCACTTGGGCCAA 60.134 47.619 19.68 19.68 0.00 4.52
794 807 1.535462 CTTTACGTCACTTGGGCCAAG 59.465 52.381 38.15 38.15 45.85 3.61
805 818 4.806640 CTTGGGCCAAGTGATTGTAATT 57.193 40.909 33.43 0.00 36.79 1.40
806 819 5.151297 CTTGGGCCAAGTGATTGTAATTT 57.849 39.130 33.43 0.00 36.79 1.82
807 820 5.550290 CTTGGGCCAAGTGATTGTAATTTT 58.450 37.500 33.43 0.00 36.79 1.82
808 821 5.559148 TGGGCCAAGTGATTGTAATTTTT 57.441 34.783 2.13 0.00 0.00 1.94
828 841 2.296073 TTTTATGCGGGTTCTTGGGT 57.704 45.000 0.00 0.00 0.00 4.51
829 842 1.828979 TTTATGCGGGTTCTTGGGTC 58.171 50.000 0.00 0.00 0.00 4.46
830 843 0.988832 TTATGCGGGTTCTTGGGTCT 59.011 50.000 0.00 0.00 0.00 3.85
831 844 0.988832 TATGCGGGTTCTTGGGTCTT 59.011 50.000 0.00 0.00 0.00 3.01
832 845 0.609131 ATGCGGGTTCTTGGGTCTTG 60.609 55.000 0.00 0.00 0.00 3.02
833 846 1.072505 GCGGGTTCTTGGGTCTTGA 59.927 57.895 0.00 0.00 0.00 3.02
834 847 0.536460 GCGGGTTCTTGGGTCTTGAA 60.536 55.000 0.00 0.00 0.00 2.69
835 848 1.523758 CGGGTTCTTGGGTCTTGAAG 58.476 55.000 0.00 0.00 0.00 3.02
836 849 1.071699 CGGGTTCTTGGGTCTTGAAGA 59.928 52.381 0.00 0.00 0.00 2.87
837 850 2.290323 CGGGTTCTTGGGTCTTGAAGAT 60.290 50.000 0.00 0.00 0.00 2.40
838 851 3.084786 GGGTTCTTGGGTCTTGAAGATG 58.915 50.000 0.00 0.00 0.00 2.90
839 852 2.489722 GGTTCTTGGGTCTTGAAGATGC 59.510 50.000 0.00 0.00 0.00 3.91
840 853 3.149196 GTTCTTGGGTCTTGAAGATGCA 58.851 45.455 0.00 0.00 0.00 3.96
841 854 3.507162 TCTTGGGTCTTGAAGATGCAA 57.493 42.857 0.00 0.00 0.00 4.08
842 855 3.831323 TCTTGGGTCTTGAAGATGCAAA 58.169 40.909 0.00 0.00 0.00 3.68
843 856 3.569701 TCTTGGGTCTTGAAGATGCAAAC 59.430 43.478 0.00 0.00 0.00 2.93
844 857 1.879380 TGGGTCTTGAAGATGCAAACG 59.121 47.619 0.00 0.00 0.00 3.60
845 858 1.880027 GGGTCTTGAAGATGCAAACGT 59.120 47.619 0.00 0.00 0.00 3.99
846 859 2.293399 GGGTCTTGAAGATGCAAACGTT 59.707 45.455 0.00 0.00 0.00 3.99
847 860 3.500680 GGGTCTTGAAGATGCAAACGTTA 59.499 43.478 0.00 0.00 0.00 3.18
848 861 4.378459 GGGTCTTGAAGATGCAAACGTTAG 60.378 45.833 0.00 0.00 0.00 2.34
849 862 4.213482 GGTCTTGAAGATGCAAACGTTAGT 59.787 41.667 0.00 0.00 0.00 2.24
850 863 5.277828 GGTCTTGAAGATGCAAACGTTAGTT 60.278 40.000 0.00 0.00 43.50 2.24
851 864 6.073440 GGTCTTGAAGATGCAAACGTTAGTTA 60.073 38.462 0.00 0.00 40.18 2.24
852 865 7.360946 GGTCTTGAAGATGCAAACGTTAGTTAT 60.361 37.037 0.00 0.00 40.18 1.89
853 866 8.015658 GTCTTGAAGATGCAAACGTTAGTTATT 58.984 33.333 0.00 0.00 40.18 1.40
854 867 8.564574 TCTTGAAGATGCAAACGTTAGTTATTT 58.435 29.630 0.00 0.00 40.18 1.40
855 868 9.180678 CTTGAAGATGCAAACGTTAGTTATTTT 57.819 29.630 0.00 0.00 40.18 1.82
856 869 8.500837 TGAAGATGCAAACGTTAGTTATTTTG 57.499 30.769 0.00 0.00 40.18 2.44
863 876 6.741500 CAAACGTTAGTTATTTTGCATCTGC 58.258 36.000 0.00 0.00 40.18 4.26
864 877 6.007936 AACGTTAGTTATTTTGCATCTGCA 57.992 33.333 0.00 0.00 43.71 4.41
865 878 6.620678 AACGTTAGTTATTTTGCATCTGCAT 58.379 32.000 5.58 0.00 44.33 3.96
866 879 7.757526 AACGTTAGTTATTTTGCATCTGCATA 58.242 30.769 5.58 0.00 44.33 3.14
867 880 8.240682 AACGTTAGTTATTTTGCATCTGCATAA 58.759 29.630 5.58 8.04 44.33 1.90
909 923 5.686159 TTTGCGGGAAAAGTATTTACGAA 57.314 34.783 0.00 0.00 37.28 3.85
910 924 5.686159 TTGCGGGAAAAGTATTTACGAAA 57.314 34.783 0.00 0.00 37.28 3.46
916 1084 6.312487 GGGAAAAGTATTTACGAAAGCTGTC 58.688 40.000 0.00 0.00 37.28 3.51
939 1107 3.992427 GGAATTGCTCTCAAAAGGCAAAG 59.008 43.478 3.79 0.00 46.59 2.77
940 1108 4.262164 GGAATTGCTCTCAAAAGGCAAAGA 60.262 41.667 3.79 0.00 46.59 2.52
941 1109 3.996150 TTGCTCTCAAAAGGCAAAGAG 57.004 42.857 0.00 0.00 41.96 2.85
942 1110 3.213206 TGCTCTCAAAAGGCAAAGAGA 57.787 42.857 2.55 0.00 37.97 3.10
943 1111 2.880890 TGCTCTCAAAAGGCAAAGAGAC 59.119 45.455 2.55 0.00 37.97 3.36
944 1112 2.096019 GCTCTCAAAAGGCAAAGAGACG 60.096 50.000 2.55 0.00 37.97 4.18
945 1113 1.873591 TCTCAAAAGGCAAAGAGACGC 59.126 47.619 0.00 0.00 32.57 5.19
946 1114 1.876156 CTCAAAAGGCAAAGAGACGCT 59.124 47.619 0.00 0.00 0.00 5.07
1036 1204 4.434354 ACTCTCGAGCCCGCCTCT 62.434 66.667 7.81 0.00 38.49 3.69
1056 1251 4.516195 GCCTTCTCCGCCTCGTCC 62.516 72.222 0.00 0.00 0.00 4.79
1059 1254 2.754658 TTCTCCGCCTCGTCCTCC 60.755 66.667 0.00 0.00 0.00 4.30
1060 1255 3.283812 TTCTCCGCCTCGTCCTCCT 62.284 63.158 0.00 0.00 0.00 3.69
1061 1256 3.213402 CTCCGCCTCGTCCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
1062 1257 4.816984 TCCGCCTCGTCCTCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
1063 1258 4.824515 CCGCCTCGTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
1064 1259 3.213402 CGCCTCGTCCTCCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
1065 1260 3.213402 GCCTCGTCCTCCTCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
1066 1261 2.272797 CCTCGTCCTCCTCCTCGT 59.727 66.667 0.00 0.00 0.00 4.18
1067 1262 1.820481 CCTCGTCCTCCTCCTCGTC 60.820 68.421 0.00 0.00 0.00 4.20
1068 1263 2.125229 TCGTCCTCCTCCTCGTCG 60.125 66.667 0.00 0.00 0.00 5.12
1069 1264 2.436292 CGTCCTCCTCCTCGTCGT 60.436 66.667 0.00 0.00 0.00 4.34
1070 1265 2.462782 CGTCCTCCTCCTCGTCGTC 61.463 68.421 0.00 0.00 0.00 4.20
1152 1347 4.619227 ACCAACCCACGCGTCCTG 62.619 66.667 9.86 2.68 0.00 3.86
1293 1488 4.467084 ATCGACCCGCGCATGGTT 62.467 61.111 18.60 1.82 40.61 3.67
1665 1865 0.961857 TGGTAGCGGACGTGAAGCTA 60.962 55.000 10.88 10.88 41.88 3.32
1923 2123 2.412323 CGCTGGCAGTGGCATCATT 61.412 57.895 20.91 0.00 43.71 2.57
1937 2137 2.744202 GCATCATTCTCGGTGTTCTTGT 59.256 45.455 0.00 0.00 0.00 3.16
1947 2147 0.042448 GTGTTCTTGTTGACGACGGC 60.042 55.000 0.00 0.00 0.00 5.68
2190 2390 2.027285 TCGGATCTTTGATTGCTCACCA 60.027 45.455 0.00 0.00 0.00 4.17
2262 2465 2.163412 GCGAATTTGCCAGTCCATGTAA 59.837 45.455 6.38 0.00 0.00 2.41
2366 2570 6.674694 AGATCTCAAACATGTGCTATTCAC 57.325 37.500 0.00 0.00 45.82 3.18
2509 2714 6.663093 ACAGGACATAACATTAAGCAAATCCA 59.337 34.615 0.00 0.00 0.00 3.41
2515 2720 4.978083 ACATTAAGCAAATCCAGCAGAG 57.022 40.909 0.00 0.00 0.00 3.35
2581 2815 1.440618 TGAACCACCACCACCATAGT 58.559 50.000 0.00 0.00 0.00 2.12
2582 2816 1.777878 TGAACCACCACCACCATAGTT 59.222 47.619 0.00 0.00 0.00 2.24
2716 2952 2.384828 TCTGCAGCCCGAAGAGTAATA 58.615 47.619 9.47 0.00 0.00 0.98
2798 3038 8.978472 AGCCAGTAGATACACTTTTACTTGATA 58.022 33.333 0.00 0.00 0.00 2.15
2807 3047 9.686683 ATACACTTTTACTTGATAGCAGGAAAT 57.313 29.630 0.00 0.00 0.00 2.17
2894 3134 3.815809 TCGAATCACCTTTTGTTGGACT 58.184 40.909 0.00 0.00 0.00 3.85
2942 3182 5.704515 GGGAGAAAAGAAGTAACCTGTTACC 59.295 44.000 14.80 3.22 44.79 2.85
2952 3192 6.145338 AGTAACCTGTTACCAGATCATACG 57.855 41.667 14.80 0.00 44.79 3.06
3006 3246 8.286191 ACTTCCTCCATTTCATAATTCTTGTC 57.714 34.615 0.00 0.00 0.00 3.18
3010 3250 7.065803 TCCTCCATTTCATAATTCTTGTCGTTC 59.934 37.037 0.00 0.00 0.00 3.95
3011 3251 7.148255 CCTCCATTTCATAATTCTTGTCGTTCA 60.148 37.037 0.00 0.00 0.00 3.18
3012 3252 8.105097 TCCATTTCATAATTCTTGTCGTTCAA 57.895 30.769 0.00 0.00 34.61 2.69
3023 5213 8.742554 ATTCTTGTCGTTCAAATTATGGAAAC 57.257 30.769 0.00 0.00 35.48 2.78
3042 5232 5.050023 GGAAACAAGAGAGTGCTAAACAGAC 60.050 44.000 0.00 0.00 0.00 3.51
3050 5240 3.846360 AGTGCTAAACAGACGGATGTAC 58.154 45.455 0.00 0.00 31.70 2.90
3051 5241 3.510360 AGTGCTAAACAGACGGATGTACT 59.490 43.478 0.00 0.00 31.70 2.73
3052 5242 3.612860 GTGCTAAACAGACGGATGTACTG 59.387 47.826 0.00 0.00 37.62 2.74
3053 5243 3.187700 GCTAAACAGACGGATGTACTGG 58.812 50.000 0.00 0.00 36.17 4.00
3055 5245 3.314541 AAACAGACGGATGTACTGGTC 57.685 47.619 0.00 0.00 36.17 4.02
3057 5247 2.093106 ACAGACGGATGTACTGGTCTC 58.907 52.381 0.00 0.00 36.17 3.36
3058 5248 1.064208 CAGACGGATGTACTGGTCTCG 59.936 57.143 0.00 0.00 0.00 4.04
3060 5250 1.065928 CGGATGTACTGGTCTCGGC 59.934 63.158 0.00 0.00 0.00 5.54
3061 5251 1.442148 GGATGTACTGGTCTCGGCC 59.558 63.158 0.00 0.00 0.00 6.13
3062 5252 1.065928 GATGTACTGGTCTCGGCCG 59.934 63.158 22.12 22.12 0.00 6.13
3063 5253 1.379443 ATGTACTGGTCTCGGCCGA 60.379 57.895 29.03 29.03 0.00 5.54
3064 5254 1.384989 ATGTACTGGTCTCGGCCGAG 61.385 60.000 42.89 42.89 43.21 4.63
3065 5255 2.439701 TACTGGTCTCGGCCGAGG 60.440 66.667 45.31 33.75 42.20 4.63
3083 5273 0.037790 GGGAGACACAGACACAGCTC 60.038 60.000 0.00 0.00 0.00 4.09
3116 5306 6.963049 AAACCTGCTAAAGTATTCGTACAG 57.037 37.500 0.00 0.00 0.00 2.74
3121 5311 5.416083 TGCTAAAGTATTCGTACAGCACAT 58.584 37.500 0.00 0.00 32.94 3.21
3122 5312 6.566141 TGCTAAAGTATTCGTACAGCACATA 58.434 36.000 0.00 0.00 32.94 2.29
3123 5313 6.474427 TGCTAAAGTATTCGTACAGCACATAC 59.526 38.462 0.00 0.00 32.94 2.39
3124 5314 6.696148 GCTAAAGTATTCGTACAGCACATACT 59.304 38.462 0.00 0.00 0.00 2.12
3125 5315 7.096558 GCTAAAGTATTCGTACAGCACATACTC 60.097 40.741 0.00 0.00 0.00 2.59
3126 5316 5.184340 AGTATTCGTACAGCACATACTCC 57.816 43.478 0.00 0.00 0.00 3.85
3127 5317 2.953466 TTCGTACAGCACATACTCCC 57.047 50.000 0.00 0.00 0.00 4.30
3128 5318 2.139323 TCGTACAGCACATACTCCCT 57.861 50.000 0.00 0.00 0.00 4.20
3129 5319 2.022195 TCGTACAGCACATACTCCCTC 58.978 52.381 0.00 0.00 0.00 4.30
3130 5320 2.025155 CGTACAGCACATACTCCCTCT 58.975 52.381 0.00 0.00 0.00 3.69
3131 5321 2.223595 CGTACAGCACATACTCCCTCTG 60.224 54.545 0.00 0.00 0.00 3.35
3132 5322 2.238084 ACAGCACATACTCCCTCTGA 57.762 50.000 0.00 0.00 0.00 3.27
3133 5323 2.756907 ACAGCACATACTCCCTCTGAT 58.243 47.619 0.00 0.00 0.00 2.90
3134 5324 2.697751 ACAGCACATACTCCCTCTGATC 59.302 50.000 0.00 0.00 0.00 2.92
3135 5325 2.036992 CAGCACATACTCCCTCTGATCC 59.963 54.545 0.00 0.00 0.00 3.36
3136 5326 2.042464 GCACATACTCCCTCTGATCCA 58.958 52.381 0.00 0.00 0.00 3.41
3137 5327 2.636893 GCACATACTCCCTCTGATCCAT 59.363 50.000 0.00 0.00 0.00 3.41
3138 5328 3.834813 GCACATACTCCCTCTGATCCATA 59.165 47.826 0.00 0.00 0.00 2.74
3139 5329 4.469227 GCACATACTCCCTCTGATCCATAT 59.531 45.833 0.00 0.00 0.00 1.78
3140 5330 5.046014 GCACATACTCCCTCTGATCCATATT 60.046 44.000 0.00 0.00 0.00 1.28
3141 5331 6.404708 CACATACTCCCTCTGATCCATATTG 58.595 44.000 0.00 0.00 0.00 1.90
3142 5332 6.212187 CACATACTCCCTCTGATCCATATTGA 59.788 42.308 0.00 0.00 0.00 2.57
3143 5333 6.964679 ACATACTCCCTCTGATCCATATTGAT 59.035 38.462 0.00 0.00 0.00 2.57
3144 5334 7.460402 ACATACTCCCTCTGATCCATATTGATT 59.540 37.037 0.00 0.00 0.00 2.57
3145 5335 6.124316 ACTCCCTCTGATCCATATTGATTG 57.876 41.667 0.00 0.00 0.00 2.67
3146 5336 5.848369 ACTCCCTCTGATCCATATTGATTGA 59.152 40.000 0.00 0.00 0.00 2.57
3147 5337 6.119240 TCCCTCTGATCCATATTGATTGAC 57.881 41.667 0.00 0.00 0.00 3.18
3148 5338 4.934001 CCCTCTGATCCATATTGATTGACG 59.066 45.833 0.00 0.00 0.00 4.35
3149 5339 4.391216 CCTCTGATCCATATTGATTGACGC 59.609 45.833 0.00 0.00 0.00 5.19
3150 5340 4.959723 TCTGATCCATATTGATTGACGCA 58.040 39.130 0.00 0.00 0.00 5.24
3151 5341 4.751600 TCTGATCCATATTGATTGACGCAC 59.248 41.667 0.00 0.00 0.00 5.34
3152 5342 4.450053 TGATCCATATTGATTGACGCACA 58.550 39.130 0.00 0.00 0.00 4.57
3153 5343 4.273235 TGATCCATATTGATTGACGCACAC 59.727 41.667 0.00 0.00 0.00 3.82
3154 5344 3.872696 TCCATATTGATTGACGCACACT 58.127 40.909 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.845985 TCAAAATAAGCTGAGACTTGTCG 57.154 39.130 0.00 0.00 0.00 4.35
12 13 8.854614 ACTATTCAAAATAAGCTGAGACTTGT 57.145 30.769 0.00 0.00 0.00 3.16
84 85 9.719355 AAAATGCCCTTAACCTATTTAAAACTG 57.281 29.630 0.00 0.00 0.00 3.16
142 143 9.301153 GGGTTGCAAATATTCACTAAGTAATTG 57.699 33.333 0.00 0.00 0.00 2.32
190 191 8.992073 GCAAGTCAAATTATTGTTTCTCCAAAT 58.008 29.630 0.00 0.00 37.79 2.32
228 229 8.422577 AGCTAAATTGTCCCTTGATAAAAAGT 57.577 30.769 0.00 0.00 0.00 2.66
257 270 3.624777 ACCCATGCTAATGACCTTTCTG 58.375 45.455 0.00 0.00 35.67 3.02
259 272 4.016444 TGAACCCATGCTAATGACCTTTC 58.984 43.478 0.00 0.00 35.67 2.62
277 290 8.784043 CACCCCTATAATTAAGCTACAATGAAC 58.216 37.037 0.00 0.00 0.00 3.18
278 291 8.499406 ACACCCCTATAATTAAGCTACAATGAA 58.501 33.333 0.00 0.00 0.00 2.57
279 292 8.041143 ACACCCCTATAATTAAGCTACAATGA 57.959 34.615 0.00 0.00 0.00 2.57
280 293 8.691661 AACACCCCTATAATTAAGCTACAATG 57.308 34.615 0.00 0.00 0.00 2.82
282 295 9.841295 CTTAACACCCCTATAATTAAGCTACAA 57.159 33.333 0.00 0.00 0.00 2.41
283 296 8.434392 CCTTAACACCCCTATAATTAAGCTACA 58.566 37.037 0.00 0.00 33.44 2.74
284 297 7.881751 CCCTTAACACCCCTATAATTAAGCTAC 59.118 40.741 0.00 0.00 33.44 3.58
285 298 7.017850 CCCCTTAACACCCCTATAATTAAGCTA 59.982 40.741 0.00 0.00 33.44 3.32
286 299 6.183361 CCCCTTAACACCCCTATAATTAAGCT 60.183 42.308 0.00 0.00 33.44 3.74
287 300 6.008331 CCCCTTAACACCCCTATAATTAAGC 58.992 44.000 0.00 0.00 33.44 3.09
288 301 6.549242 CCCCCTTAACACCCCTATAATTAAG 58.451 44.000 0.00 0.00 34.19 1.85
289 302 6.533639 CCCCCTTAACACCCCTATAATTAA 57.466 41.667 0.00 0.00 0.00 1.40
312 325 4.614036 CACCCACCCAACCCCACC 62.614 72.222 0.00 0.00 0.00 4.61
313 326 4.614036 CCACCCACCCAACCCCAC 62.614 72.222 0.00 0.00 0.00 4.61
316 329 4.614036 CACCCACCCACCCAACCC 62.614 72.222 0.00 0.00 0.00 4.11
317 330 4.614036 CCACCCACCCACCCAACC 62.614 72.222 0.00 0.00 0.00 3.77
318 331 4.614036 CCCACCCACCCACCCAAC 62.614 72.222 0.00 0.00 0.00 3.77
344 357 2.360350 ATCACAGCCAAGCCACCG 60.360 61.111 0.00 0.00 0.00 4.94
345 358 1.303561 TCATCACAGCCAAGCCACC 60.304 57.895 0.00 0.00 0.00 4.61
346 359 1.878775 GTCATCACAGCCAAGCCAC 59.121 57.895 0.00 0.00 0.00 5.01
347 360 1.672030 CGTCATCACAGCCAAGCCA 60.672 57.895 0.00 0.00 0.00 4.75
348 361 2.401766 CCGTCATCACAGCCAAGCC 61.402 63.158 0.00 0.00 0.00 4.35
349 362 3.044059 GCCGTCATCACAGCCAAGC 62.044 63.158 0.00 0.00 0.00 4.01
350 363 2.743752 CGCCGTCATCACAGCCAAG 61.744 63.158 0.00 0.00 0.00 3.61
351 364 2.723586 TTCGCCGTCATCACAGCCAA 62.724 55.000 0.00 0.00 0.00 4.52
352 365 2.723586 TTTCGCCGTCATCACAGCCA 62.724 55.000 0.00 0.00 0.00 4.75
353 366 1.573829 TTTTCGCCGTCATCACAGCC 61.574 55.000 0.00 0.00 0.00 4.85
354 367 0.452784 GTTTTCGCCGTCATCACAGC 60.453 55.000 0.00 0.00 0.00 4.40
355 368 0.179250 CGTTTTCGCCGTCATCACAG 60.179 55.000 0.00 0.00 36.22 3.66
356 369 1.561717 CCGTTTTCGCCGTCATCACA 61.562 55.000 0.00 0.00 42.58 3.58
357 370 1.131826 CCGTTTTCGCCGTCATCAC 59.868 57.895 0.00 0.00 42.58 3.06
358 371 2.673114 GCCGTTTTCGCCGTCATCA 61.673 57.895 0.00 0.00 42.58 3.07
359 372 2.097728 GCCGTTTTCGCCGTCATC 59.902 61.111 0.00 0.00 42.58 2.92
360 373 2.255172 TTGCCGTTTTCGCCGTCAT 61.255 52.632 0.00 0.00 42.58 3.06
361 374 2.895865 TTGCCGTTTTCGCCGTCA 60.896 55.556 0.00 0.00 42.58 4.35
362 375 2.426261 GTTGCCGTTTTCGCCGTC 60.426 61.111 0.00 0.00 42.58 4.79
363 376 4.302172 CGTTGCCGTTTTCGCCGT 62.302 61.111 0.00 0.00 42.58 5.68
364 377 3.904233 CTCGTTGCCGTTTTCGCCG 62.904 63.158 0.00 0.00 42.58 6.46
365 378 2.127383 CTCGTTGCCGTTTTCGCC 60.127 61.111 0.00 0.00 42.58 5.54
366 379 2.127383 CCTCGTTGCCGTTTTCGC 60.127 61.111 0.00 0.00 42.58 4.70
367 380 1.203313 GTCCTCGTTGCCGTTTTCG 59.797 57.895 0.00 0.00 43.67 3.46
368 381 1.203313 CGTCCTCGTTGCCGTTTTC 59.797 57.895 0.00 0.00 35.01 2.29
369 382 0.810823 TTCGTCCTCGTTGCCGTTTT 60.811 50.000 0.00 0.00 38.33 2.43
370 383 1.227321 TTCGTCCTCGTTGCCGTTT 60.227 52.632 0.00 0.00 38.33 3.60
401 414 2.618709 CCTTATTTTCCACCGCTCCATC 59.381 50.000 0.00 0.00 0.00 3.51
410 423 4.698304 TCGTGGATCAACCTTATTTTCCAC 59.302 41.667 9.33 9.33 46.13 4.02
411 424 4.698304 GTCGTGGATCAACCTTATTTTCCA 59.302 41.667 0.00 0.00 39.86 3.53
413 426 4.390909 ACGTCGTGGATCAACCTTATTTTC 59.609 41.667 0.00 0.00 39.86 2.29
420 433 1.374252 GCACGTCGTGGATCAACCT 60.374 57.895 25.70 0.00 39.86 3.50
422 435 2.769617 CGCACGTCGTGGATCAAC 59.230 61.111 25.70 7.82 33.64 3.18
471 484 4.280019 AACCCGACCCCAAGCACC 62.280 66.667 0.00 0.00 0.00 5.01
472 485 2.983592 CAACCCGACCCCAAGCAC 60.984 66.667 0.00 0.00 0.00 4.40
473 486 3.494254 ACAACCCGACCCCAAGCA 61.494 61.111 0.00 0.00 0.00 3.91
474 487 2.983592 CACAACCCGACCCCAAGC 60.984 66.667 0.00 0.00 0.00 4.01
475 488 2.282180 CCACAACCCGACCCCAAG 60.282 66.667 0.00 0.00 0.00 3.61
476 489 4.589675 GCCACAACCCGACCCCAA 62.590 66.667 0.00 0.00 0.00 4.12
481 494 4.612412 TCGTGGCCACAACCCGAC 62.612 66.667 34.16 6.15 30.64 4.79
482 495 4.612412 GTCGTGGCCACAACCCGA 62.612 66.667 34.16 22.73 32.37 5.14
485 498 4.922026 ACCGTCGTGGCCACAACC 62.922 66.667 34.16 19.67 43.94 3.77
486 499 3.645975 CACCGTCGTGGCCACAAC 61.646 66.667 34.16 26.37 43.94 3.32
494 507 2.247267 GTTTTCGCCACCGTCGTG 59.753 61.111 0.00 0.00 39.91 4.35
495 508 3.332409 CGTTTTCGCCACCGTCGT 61.332 61.111 0.00 0.00 36.22 4.34
496 509 4.067016 CCGTTTTCGCCACCGTCG 62.067 66.667 0.00 0.00 42.58 5.12
497 510 4.379143 GCCGTTTTCGCCACCGTC 62.379 66.667 0.00 0.00 42.58 4.79
506 519 4.394078 GTTCCCGCCGCCGTTTTC 62.394 66.667 0.00 0.00 0.00 2.29
517 530 2.890474 CTGCCCGATTCGTTCCCG 60.890 66.667 5.20 0.00 0.00 5.14
518 531 3.202706 GCTGCCCGATTCGTTCCC 61.203 66.667 5.20 0.00 0.00 3.97
519 532 3.564027 CGCTGCCCGATTCGTTCC 61.564 66.667 5.20 0.00 40.02 3.62
520 533 3.564027 CCGCTGCCCGATTCGTTC 61.564 66.667 5.20 0.00 40.02 3.95
542 555 4.351938 GCGTTTTTCGGCCACCCC 62.352 66.667 2.24 0.00 40.26 4.95
549 562 2.518949 CATGAATCAGGCGTTTTTCGG 58.481 47.619 0.00 0.00 40.26 4.30
550 563 2.518949 CCATGAATCAGGCGTTTTTCG 58.481 47.619 0.00 0.00 43.12 3.46
551 564 2.262211 GCCATGAATCAGGCGTTTTTC 58.738 47.619 7.71 0.00 41.70 2.29
552 565 2.368655 GCCATGAATCAGGCGTTTTT 57.631 45.000 7.71 0.00 41.70 1.94
559 572 1.825191 CCCCACGCCATGAATCAGG 60.825 63.158 0.00 0.00 0.00 3.86
560 573 2.484062 GCCCCACGCCATGAATCAG 61.484 63.158 0.00 0.00 0.00 2.90
561 574 2.440065 GCCCCACGCCATGAATCA 60.440 61.111 0.00 0.00 0.00 2.57
562 575 3.585990 CGCCCCACGCCATGAATC 61.586 66.667 0.00 0.00 33.16 2.52
563 576 3.420206 ATCGCCCCACGCCATGAAT 62.420 57.895 0.00 0.00 43.23 2.57
564 577 4.108299 ATCGCCCCACGCCATGAA 62.108 61.111 0.00 0.00 43.23 2.57
565 578 4.545706 GATCGCCCCACGCCATGA 62.546 66.667 0.00 0.00 43.23 3.07
570 583 3.861263 GTTTCGATCGCCCCACGC 61.861 66.667 11.09 0.00 43.23 5.34
571 584 3.550992 CGTTTCGATCGCCCCACG 61.551 66.667 11.09 11.52 45.62 4.94
572 585 3.861263 GCGTTTCGATCGCCCCAC 61.861 66.667 19.80 3.11 46.61 4.61
579 592 3.183323 TTCCGCCGCGTTTCGATC 61.183 61.111 12.58 0.00 41.67 3.69
580 593 3.484547 GTTCCGCCGCGTTTCGAT 61.485 61.111 12.58 0.00 41.67 3.59
583 596 3.652000 TTGGTTCCGCCGCGTTTC 61.652 61.111 12.58 1.07 41.21 2.78
584 597 3.956317 GTTGGTTCCGCCGCGTTT 61.956 61.111 12.58 0.00 41.21 3.60
590 603 3.110178 CTCGTCGTTGGTTCCGCC 61.110 66.667 0.00 0.00 37.90 6.13
591 604 3.110178 CCTCGTCGTTGGTTCCGC 61.110 66.667 0.00 0.00 0.00 5.54
592 605 2.431942 CCCTCGTCGTTGGTTCCG 60.432 66.667 0.00 0.00 0.00 4.30
593 606 1.666872 CACCCTCGTCGTTGGTTCC 60.667 63.158 5.83 0.00 0.00 3.62
594 607 1.666872 CCACCCTCGTCGTTGGTTC 60.667 63.158 5.83 0.00 0.00 3.62
595 608 2.424302 CCACCCTCGTCGTTGGTT 59.576 61.111 5.83 0.00 0.00 3.67
596 609 2.841044 ACCACCCTCGTCGTTGGT 60.841 61.111 3.14 3.14 0.00 3.67
597 610 2.357034 CACCACCCTCGTCGTTGG 60.357 66.667 0.00 0.00 0.00 3.77
598 611 2.357034 CCACCACCCTCGTCGTTG 60.357 66.667 0.00 0.00 0.00 4.10
599 612 2.522436 TCCACCACCCTCGTCGTT 60.522 61.111 0.00 0.00 0.00 3.85
600 613 2.989824 CTCCACCACCCTCGTCGT 60.990 66.667 0.00 0.00 0.00 4.34
601 614 4.436998 GCTCCACCACCCTCGTCG 62.437 72.222 0.00 0.00 0.00 5.12
602 615 4.436998 CGCTCCACCACCCTCGTC 62.437 72.222 0.00 0.00 0.00 4.20
612 625 4.899239 CAGATCCGGCCGCTCCAC 62.899 72.222 22.85 8.76 34.01 4.02
635 648 4.830765 TACCATGCCGCTGTCGCC 62.831 66.667 0.00 0.00 0.00 5.54
636 649 3.564027 GTACCATGCCGCTGTCGC 61.564 66.667 0.00 0.00 0.00 5.19
637 650 3.254654 CGTACCATGCCGCTGTCG 61.255 66.667 0.00 0.00 0.00 4.35
638 651 2.890474 CCGTACCATGCCGCTGTC 60.890 66.667 0.00 0.00 0.00 3.51
639 652 3.702048 ACCGTACCATGCCGCTGT 61.702 61.111 0.00 0.00 0.00 4.40
640 653 3.195002 CACCGTACCATGCCGCTG 61.195 66.667 0.00 0.00 0.00 5.18
641 654 4.467084 CCACCGTACCATGCCGCT 62.467 66.667 0.00 0.00 0.00 5.52
646 659 4.849310 CCCGCCCACCGTACCATG 62.849 72.222 0.00 0.00 34.38 3.66
664 677 3.605749 TTCTTCCTCCCGCCGCTTG 62.606 63.158 0.00 0.00 0.00 4.01
665 678 3.316573 CTTCTTCCTCCCGCCGCTT 62.317 63.158 0.00 0.00 0.00 4.68
666 679 3.775654 CTTCTTCCTCCCGCCGCT 61.776 66.667 0.00 0.00 0.00 5.52
667 680 3.095347 ATCTTCTTCCTCCCGCCGC 62.095 63.158 0.00 0.00 0.00 6.53
668 681 1.227380 CATCTTCTTCCTCCCGCCG 60.227 63.158 0.00 0.00 0.00 6.46
669 682 1.524849 GCATCTTCTTCCTCCCGCC 60.525 63.158 0.00 0.00 0.00 6.13
670 683 1.884926 CGCATCTTCTTCCTCCCGC 60.885 63.158 0.00 0.00 0.00 6.13
671 684 1.227380 CCGCATCTTCTTCCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
672 685 1.147153 CCCGCATCTTCTTCCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
673 686 0.462759 CACCCGCATCTTCTTCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
674 687 0.250513 ACACCCGCATCTTCTTCCTC 59.749 55.000 0.00 0.00 0.00 3.71
675 688 0.036010 CACACCCGCATCTTCTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
676 689 0.036388 TCACACCCGCATCTTCTTCC 60.036 55.000 0.00 0.00 0.00 3.46
677 690 1.066858 TCTCACACCCGCATCTTCTTC 60.067 52.381 0.00 0.00 0.00 2.87
678 691 0.976641 TCTCACACCCGCATCTTCTT 59.023 50.000 0.00 0.00 0.00 2.52
679 692 0.976641 TTCTCACACCCGCATCTTCT 59.023 50.000 0.00 0.00 0.00 2.85
680 693 1.808411 TTTCTCACACCCGCATCTTC 58.192 50.000 0.00 0.00 0.00 2.87
681 694 2.154462 CTTTTCTCACACCCGCATCTT 58.846 47.619 0.00 0.00 0.00 2.40
682 695 1.347707 TCTTTTCTCACACCCGCATCT 59.652 47.619 0.00 0.00 0.00 2.90
683 696 1.808411 TCTTTTCTCACACCCGCATC 58.192 50.000 0.00 0.00 0.00 3.91
684 697 1.880027 GTTCTTTTCTCACACCCGCAT 59.120 47.619 0.00 0.00 0.00 4.73
685 698 1.134220 AGTTCTTTTCTCACACCCGCA 60.134 47.619 0.00 0.00 0.00 5.69
686 699 1.594331 AGTTCTTTTCTCACACCCGC 58.406 50.000 0.00 0.00 0.00 6.13
687 700 4.213482 CCTTTAGTTCTTTTCTCACACCCG 59.787 45.833 0.00 0.00 0.00 5.28
688 701 4.519350 CCCTTTAGTTCTTTTCTCACACCC 59.481 45.833 0.00 0.00 0.00 4.61
689 702 4.023107 GCCCTTTAGTTCTTTTCTCACACC 60.023 45.833 0.00 0.00 0.00 4.16
690 703 4.319549 CGCCCTTTAGTTCTTTTCTCACAC 60.320 45.833 0.00 0.00 0.00 3.82
691 704 3.813166 CGCCCTTTAGTTCTTTTCTCACA 59.187 43.478 0.00 0.00 0.00 3.58
692 705 3.188667 CCGCCCTTTAGTTCTTTTCTCAC 59.811 47.826 0.00 0.00 0.00 3.51
693 706 3.181448 ACCGCCCTTTAGTTCTTTTCTCA 60.181 43.478 0.00 0.00 0.00 3.27
694 707 3.409570 ACCGCCCTTTAGTTCTTTTCTC 58.590 45.455 0.00 0.00 0.00 2.87
695 708 3.503800 ACCGCCCTTTAGTTCTTTTCT 57.496 42.857 0.00 0.00 0.00 2.52
696 709 3.566742 TCAACCGCCCTTTAGTTCTTTTC 59.433 43.478 0.00 0.00 0.00 2.29
697 710 3.317149 GTCAACCGCCCTTTAGTTCTTTT 59.683 43.478 0.00 0.00 0.00 2.27
698 711 2.882761 GTCAACCGCCCTTTAGTTCTTT 59.117 45.455 0.00 0.00 0.00 2.52
699 712 2.501261 GTCAACCGCCCTTTAGTTCTT 58.499 47.619 0.00 0.00 0.00 2.52
700 713 1.607251 CGTCAACCGCCCTTTAGTTCT 60.607 52.381 0.00 0.00 0.00 3.01
701 714 0.794473 CGTCAACCGCCCTTTAGTTC 59.206 55.000 0.00 0.00 0.00 3.01
702 715 0.604511 CCGTCAACCGCCCTTTAGTT 60.605 55.000 0.00 0.00 34.38 2.24
703 716 1.004200 CCGTCAACCGCCCTTTAGT 60.004 57.895 0.00 0.00 34.38 2.24
704 717 0.604511 AACCGTCAACCGCCCTTTAG 60.605 55.000 0.00 0.00 34.38 1.85
705 718 0.885596 CAACCGTCAACCGCCCTTTA 60.886 55.000 0.00 0.00 34.38 1.85
706 719 2.190841 CAACCGTCAACCGCCCTTT 61.191 57.895 0.00 0.00 34.38 3.11
707 720 2.593436 CAACCGTCAACCGCCCTT 60.593 61.111 0.00 0.00 34.38 3.95
708 721 4.636435 CCAACCGTCAACCGCCCT 62.636 66.667 0.00 0.00 34.38 5.19
725 738 4.143363 GTAAGGTTGGTCGCGCGC 62.143 66.667 27.95 23.91 0.00 6.86
726 739 2.020836 GATGTAAGGTTGGTCGCGCG 62.021 60.000 26.76 26.76 0.00 6.86
727 740 1.017177 TGATGTAAGGTTGGTCGCGC 61.017 55.000 0.00 0.00 0.00 6.86
728 741 0.719465 GTGATGTAAGGTTGGTCGCG 59.281 55.000 0.00 0.00 0.00 5.87
729 742 0.719465 CGTGATGTAAGGTTGGTCGC 59.281 55.000 0.00 0.00 0.00 5.19
730 743 1.724623 CACGTGATGTAAGGTTGGTCG 59.275 52.381 10.90 0.00 0.00 4.79
731 744 2.073816 CCACGTGATGTAAGGTTGGTC 58.926 52.381 19.30 0.00 0.00 4.02
732 745 1.695242 TCCACGTGATGTAAGGTTGGT 59.305 47.619 19.30 0.00 0.00 3.67
733 746 2.346803 CTCCACGTGATGTAAGGTTGG 58.653 52.381 19.30 0.00 0.00 3.77
734 747 2.289444 ACCTCCACGTGATGTAAGGTTG 60.289 50.000 19.30 0.00 41.01 3.77
735 748 1.975680 ACCTCCACGTGATGTAAGGTT 59.024 47.619 19.30 4.19 41.01 3.50
736 749 1.275291 CACCTCCACGTGATGTAAGGT 59.725 52.381 19.30 17.10 43.30 3.50
737 750 1.548719 TCACCTCCACGTGATGTAAGG 59.451 52.381 19.30 16.48 37.85 2.69
738 751 3.056821 TCTTCACCTCCACGTGATGTAAG 60.057 47.826 19.30 12.19 42.20 2.34
739 752 2.894765 TCTTCACCTCCACGTGATGTAA 59.105 45.455 19.30 2.66 42.20 2.41
740 753 2.521126 TCTTCACCTCCACGTGATGTA 58.479 47.619 19.30 2.94 42.20 2.29
741 754 1.338107 TCTTCACCTCCACGTGATGT 58.662 50.000 19.30 7.96 42.20 3.06
742 755 2.274437 CATCTTCACCTCCACGTGATG 58.726 52.381 19.30 9.78 42.20 3.07
743 756 1.406069 GCATCTTCACCTCCACGTGAT 60.406 52.381 19.30 0.00 42.20 3.06
744 757 0.037326 GCATCTTCACCTCCACGTGA 60.037 55.000 19.30 2.03 40.98 4.35
745 758 0.320683 TGCATCTTCACCTCCACGTG 60.321 55.000 9.08 9.08 34.93 4.49
746 759 0.396435 TTGCATCTTCACCTCCACGT 59.604 50.000 0.00 0.00 0.00 4.49
747 760 1.081892 CTTGCATCTTCACCTCCACG 58.918 55.000 0.00 0.00 0.00 4.94
748 761 2.191128 ACTTGCATCTTCACCTCCAC 57.809 50.000 0.00 0.00 0.00 4.02
749 762 4.263462 ACAATACTTGCATCTTCACCTCCA 60.263 41.667 0.00 0.00 0.00 3.86
750 763 4.265073 ACAATACTTGCATCTTCACCTCC 58.735 43.478 0.00 0.00 0.00 4.30
751 764 6.109359 AGTACAATACTTGCATCTTCACCTC 58.891 40.000 0.00 0.00 34.86 3.85
752 765 6.054860 AGTACAATACTTGCATCTTCACCT 57.945 37.500 0.00 0.00 34.86 4.00
753 766 6.743575 AAGTACAATACTTGCATCTTCACC 57.256 37.500 0.46 0.00 46.58 4.02
765 778 6.161381 CCCAAGTGACGTAAAGTACAATACT 58.839 40.000 0.00 0.00 41.73 2.12
766 779 5.163923 GCCCAAGTGACGTAAAGTACAATAC 60.164 44.000 0.00 0.00 0.00 1.89
767 780 4.931002 GCCCAAGTGACGTAAAGTACAATA 59.069 41.667 0.00 0.00 0.00 1.90
768 781 3.749609 GCCCAAGTGACGTAAAGTACAAT 59.250 43.478 0.00 0.00 0.00 2.71
769 782 3.132925 GCCCAAGTGACGTAAAGTACAA 58.867 45.455 0.00 0.00 0.00 2.41
770 783 2.548493 GGCCCAAGTGACGTAAAGTACA 60.548 50.000 0.00 0.00 0.00 2.90
771 784 2.071540 GGCCCAAGTGACGTAAAGTAC 58.928 52.381 0.00 0.00 0.00 2.73
772 785 1.693062 TGGCCCAAGTGACGTAAAGTA 59.307 47.619 0.00 0.00 0.00 2.24
773 786 0.470766 TGGCCCAAGTGACGTAAAGT 59.529 50.000 0.00 0.00 0.00 2.66
774 787 1.535462 CTTGGCCCAAGTGACGTAAAG 59.465 52.381 15.63 0.00 36.79 1.85
775 788 1.600023 CTTGGCCCAAGTGACGTAAA 58.400 50.000 15.63 0.00 36.79 2.01
776 789 3.315765 CTTGGCCCAAGTGACGTAA 57.684 52.632 15.63 0.00 36.79 3.18
784 797 4.806640 AATTACAATCACTTGGCCCAAG 57.193 40.909 21.95 21.95 45.85 3.61
785 798 5.559148 AAAATTACAATCACTTGGCCCAA 57.441 34.783 0.00 0.00 36.64 4.12
786 799 5.559148 AAAAATTACAATCACTTGGCCCA 57.441 34.783 0.00 0.00 36.64 5.36
808 821 2.559231 GACCCAAGAACCCGCATAAAAA 59.441 45.455 0.00 0.00 0.00 1.94
809 822 2.164338 GACCCAAGAACCCGCATAAAA 58.836 47.619 0.00 0.00 0.00 1.52
810 823 1.353022 AGACCCAAGAACCCGCATAAA 59.647 47.619 0.00 0.00 0.00 1.40
811 824 0.988832 AGACCCAAGAACCCGCATAA 59.011 50.000 0.00 0.00 0.00 1.90
812 825 0.988832 AAGACCCAAGAACCCGCATA 59.011 50.000 0.00 0.00 0.00 3.14
813 826 0.609131 CAAGACCCAAGAACCCGCAT 60.609 55.000 0.00 0.00 0.00 4.73
814 827 1.228124 CAAGACCCAAGAACCCGCA 60.228 57.895 0.00 0.00 0.00 5.69
815 828 0.536460 TTCAAGACCCAAGAACCCGC 60.536 55.000 0.00 0.00 0.00 6.13
816 829 1.071699 TCTTCAAGACCCAAGAACCCG 59.928 52.381 0.00 0.00 0.00 5.28
817 830 2.951229 TCTTCAAGACCCAAGAACCC 57.049 50.000 0.00 0.00 0.00 4.11
818 831 2.489722 GCATCTTCAAGACCCAAGAACC 59.510 50.000 0.00 0.00 32.40 3.62
819 832 3.149196 TGCATCTTCAAGACCCAAGAAC 58.851 45.455 0.00 0.00 32.40 3.01
820 833 3.507162 TGCATCTTCAAGACCCAAGAA 57.493 42.857 0.00 0.00 32.40 2.52
821 834 3.507162 TTGCATCTTCAAGACCCAAGA 57.493 42.857 0.00 0.00 33.18 3.02
822 835 3.610114 CGTTTGCATCTTCAAGACCCAAG 60.610 47.826 0.00 0.00 0.00 3.61
823 836 2.293122 CGTTTGCATCTTCAAGACCCAA 59.707 45.455 0.00 0.00 0.00 4.12
824 837 1.879380 CGTTTGCATCTTCAAGACCCA 59.121 47.619 0.00 0.00 0.00 4.51
825 838 1.880027 ACGTTTGCATCTTCAAGACCC 59.120 47.619 0.00 0.00 0.00 4.46
826 839 3.626028 AACGTTTGCATCTTCAAGACC 57.374 42.857 0.00 0.00 0.00 3.85
827 840 5.344207 ACTAACGTTTGCATCTTCAAGAC 57.656 39.130 5.91 0.00 0.00 3.01
828 841 7.667043 ATAACTAACGTTTGCATCTTCAAGA 57.333 32.000 5.91 0.00 34.59 3.02
829 842 8.728088 AAATAACTAACGTTTGCATCTTCAAG 57.272 30.769 5.91 0.00 34.59 3.02
830 843 8.963130 CAAAATAACTAACGTTTGCATCTTCAA 58.037 29.630 5.91 0.00 34.59 2.69
831 844 8.500837 CAAAATAACTAACGTTTGCATCTTCA 57.499 30.769 5.91 0.00 34.59 3.02
839 852 6.741500 GCAGATGCAAAATAACTAACGTTTG 58.258 36.000 5.91 7.25 41.59 2.93
840 853 6.927933 GCAGATGCAAAATAACTAACGTTT 57.072 33.333 5.91 0.00 41.59 3.60
850 863 8.948145 AAAGCATTTTTATGCAGATGCAAAATA 58.052 25.926 12.13 9.09 46.30 1.40
851 864 7.822658 AAAGCATTTTTATGCAGATGCAAAAT 58.177 26.923 12.13 10.35 46.30 1.82
852 865 7.204496 AAAGCATTTTTATGCAGATGCAAAA 57.796 28.000 12.13 8.46 46.30 2.44
853 866 6.804770 AAAGCATTTTTATGCAGATGCAAA 57.195 29.167 12.13 1.78 46.30 3.68
868 881 5.234116 CGCAAAAGTGGTTAGAAAAGCATTT 59.766 36.000 0.00 0.00 44.37 2.32
869 882 4.744631 CGCAAAAGTGGTTAGAAAAGCATT 59.255 37.500 0.00 0.00 44.37 3.56
890 903 4.093514 GCTTTCGTAAATACTTTTCCCGC 58.906 43.478 0.00 0.00 0.00 6.13
901 914 4.671766 GCAATTCCGACAGCTTTCGTAAAT 60.672 41.667 20.01 15.48 37.29 1.40
909 923 1.002430 TGAGAGCAATTCCGACAGCTT 59.998 47.619 0.00 0.00 37.48 3.74
910 924 0.610174 TGAGAGCAATTCCGACAGCT 59.390 50.000 0.00 0.00 40.60 4.24
916 1084 1.541147 TGCCTTTTGAGAGCAATTCCG 59.459 47.619 0.00 0.00 33.25 4.30
939 1107 0.736053 AACATCTCTCGGAGCGTCTC 59.264 55.000 0.00 0.00 0.00 3.36
940 1108 0.453793 CAACATCTCTCGGAGCGTCT 59.546 55.000 0.00 0.00 0.00 4.18
941 1109 0.171455 ACAACATCTCTCGGAGCGTC 59.829 55.000 0.00 0.00 0.00 5.19
942 1110 0.603569 AACAACATCTCTCGGAGCGT 59.396 50.000 0.00 0.00 0.00 5.07
943 1111 1.272781 GAACAACATCTCTCGGAGCG 58.727 55.000 0.00 0.00 0.00 5.03
944 1112 1.135373 TCGAACAACATCTCTCGGAGC 60.135 52.381 0.00 0.00 32.25 4.70
945 1113 2.162608 AGTCGAACAACATCTCTCGGAG 59.837 50.000 0.00 0.00 32.25 4.63
946 1114 2.160205 AGTCGAACAACATCTCTCGGA 58.840 47.619 0.00 0.00 32.25 4.55
1018 1186 4.200283 GAGGCGGGCTCGAGAGTG 62.200 72.222 18.75 5.17 39.00 3.51
1056 1251 1.649390 CCAGTGACGACGAGGAGGAG 61.649 65.000 0.00 0.00 0.00 3.69
1059 1254 2.179517 GCCAGTGACGACGAGGAG 59.820 66.667 0.00 0.00 0.00 3.69
1060 1255 3.733960 CGCCAGTGACGACGAGGA 61.734 66.667 0.00 0.00 0.00 3.71
1061 1256 3.948086 GACGCCAGTGACGACGAGG 62.948 68.421 5.64 0.00 0.00 4.63
1062 1257 2.502080 GACGCCAGTGACGACGAG 60.502 66.667 5.64 0.00 0.00 4.18
1065 1260 3.948086 CTCCGACGCCAGTGACGAC 62.948 68.421 5.64 0.00 0.00 4.34
1066 1261 3.733960 CTCCGACGCCAGTGACGA 61.734 66.667 5.64 0.00 0.00 4.20
1067 1262 4.778415 CCTCCGACGCCAGTGACG 62.778 72.222 0.00 0.00 0.00 4.35
1412 1607 0.529378 CACCTGGCAATGGAGAAAGC 59.471 55.000 0.00 0.00 0.00 3.51
1665 1865 0.969149 TCTTGCTCACGTCCATGAGT 59.031 50.000 0.00 0.00 46.65 3.41
1750 1950 3.429141 GGCGACGTCGACCTCAGA 61.429 66.667 39.74 0.00 42.67 3.27
1906 2106 1.035932 AGAATGATGCCACTGCCAGC 61.036 55.000 0.00 0.00 36.33 4.85
1923 2123 1.406180 TCGTCAACAAGAACACCGAGA 59.594 47.619 0.00 0.00 0.00 4.04
1937 2137 0.597898 TTCGTCATTGCCGTCGTCAA 60.598 50.000 0.00 0.00 0.00 3.18
1947 2147 1.136147 GCTGCAGGCTTCGTCATTG 59.864 57.895 17.12 0.00 38.06 2.82
2190 2390 0.109781 GTGCGTCGGTCATTTGCATT 60.110 50.000 0.00 0.00 37.93 3.56
2262 2465 2.093973 ACGCTAGACAGCTGCTAAACAT 60.094 45.455 15.27 0.00 46.26 2.71
2289 2493 3.641436 TCTCTGCAACTCTGAACCAACTA 59.359 43.478 0.00 0.00 0.00 2.24
2509 2714 7.717568 ACAGTCGAAACATATATAACTCTGCT 58.282 34.615 0.00 0.00 0.00 4.24
2567 2801 2.039746 TCCTGAAACTATGGTGGTGGTG 59.960 50.000 0.00 0.00 0.00 4.17
2581 2815 4.610333 TGGTCTAGAGTAGCATCCTGAAA 58.390 43.478 0.00 0.00 0.00 2.69
2582 2816 4.251103 TGGTCTAGAGTAGCATCCTGAA 57.749 45.455 0.00 0.00 0.00 3.02
2678 2914 2.290367 CAGATGTTTTCTGCGTGTTGGA 59.710 45.455 0.00 0.00 45.16 3.53
2807 3047 5.221106 GCATCCAGATAAAAATGCAGCACTA 60.221 40.000 0.00 0.00 43.10 2.74
2984 3224 6.414732 ACGACAAGAATTATGAAATGGAGGA 58.585 36.000 0.00 0.00 0.00 3.71
3006 3246 7.535258 CACTCTCTTGTTTCCATAATTTGAACG 59.465 37.037 0.00 0.00 0.00 3.95
3010 3250 6.917533 AGCACTCTCTTGTTTCCATAATTTG 58.082 36.000 0.00 0.00 0.00 2.32
3011 3251 8.635765 TTAGCACTCTCTTGTTTCCATAATTT 57.364 30.769 0.00 0.00 0.00 1.82
3012 3252 8.515414 GTTTAGCACTCTCTTGTTTCCATAATT 58.485 33.333 0.00 0.00 0.00 1.40
3022 5212 3.553096 CCGTCTGTTTAGCACTCTCTTGT 60.553 47.826 0.00 0.00 0.00 3.16
3023 5213 2.989840 CCGTCTGTTTAGCACTCTCTTG 59.010 50.000 0.00 0.00 0.00 3.02
3042 5232 1.065928 GCCGAGACCAGTACATCCG 59.934 63.158 0.00 0.00 0.00 4.18
3055 5245 3.827898 GTGTCTCCCTCGGCCGAG 61.828 72.222 41.90 41.90 41.63 4.63
3057 5247 4.135153 CTGTGTCTCCCTCGGCCG 62.135 72.222 22.12 22.12 0.00 6.13
3058 5248 2.680352 TCTGTGTCTCCCTCGGCC 60.680 66.667 0.00 0.00 0.00 6.13
3060 5250 1.179174 TGTGTCTGTGTCTCCCTCGG 61.179 60.000 0.00 0.00 0.00 4.63
3061 5251 0.242286 CTGTGTCTGTGTCTCCCTCG 59.758 60.000 0.00 0.00 0.00 4.63
3062 5252 0.037790 GCTGTGTCTGTGTCTCCCTC 60.038 60.000 0.00 0.00 0.00 4.30
3063 5253 0.470833 AGCTGTGTCTGTGTCTCCCT 60.471 55.000 0.00 0.00 0.00 4.20
3064 5254 0.037790 GAGCTGTGTCTGTGTCTCCC 60.038 60.000 0.00 0.00 0.00 4.30
3065 5255 0.676184 TGAGCTGTGTCTGTGTCTCC 59.324 55.000 0.00 0.00 0.00 3.71
3066 5256 2.029560 TCATGAGCTGTGTCTGTGTCTC 60.030 50.000 0.00 0.00 0.00 3.36
3067 5257 1.966354 TCATGAGCTGTGTCTGTGTCT 59.034 47.619 0.00 0.00 0.00 3.41
3068 5258 2.445565 TCATGAGCTGTGTCTGTGTC 57.554 50.000 0.00 0.00 0.00 3.67
3116 5306 2.042464 TGGATCAGAGGGAGTATGTGC 58.958 52.381 0.00 0.00 0.00 4.57
3121 5311 7.018769 TCAATCAATATGGATCAGAGGGAGTA 58.981 38.462 0.00 0.00 0.00 2.59
3122 5312 5.848369 TCAATCAATATGGATCAGAGGGAGT 59.152 40.000 0.00 0.00 0.00 3.85
3123 5313 6.171921 GTCAATCAATATGGATCAGAGGGAG 58.828 44.000 0.00 0.00 0.00 4.30
3124 5314 5.279657 CGTCAATCAATATGGATCAGAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
3125 5315 4.934001 CGTCAATCAATATGGATCAGAGGG 59.066 45.833 0.00 0.00 0.00 4.30
3126 5316 4.391216 GCGTCAATCAATATGGATCAGAGG 59.609 45.833 0.00 2.64 0.00 3.69
3127 5317 4.992951 TGCGTCAATCAATATGGATCAGAG 59.007 41.667 0.00 0.00 0.00 3.35
3128 5318 4.751600 GTGCGTCAATCAATATGGATCAGA 59.248 41.667 0.00 0.00 0.00 3.27
3129 5319 4.512571 TGTGCGTCAATCAATATGGATCAG 59.487 41.667 0.00 0.00 0.00 2.90
3130 5320 4.273235 GTGTGCGTCAATCAATATGGATCA 59.727 41.667 0.00 0.00 0.00 2.92
3131 5321 4.512944 AGTGTGCGTCAATCAATATGGATC 59.487 41.667 0.00 0.00 0.00 3.36
3132 5322 4.454678 AGTGTGCGTCAATCAATATGGAT 58.545 39.130 0.00 0.00 0.00 3.41
3133 5323 3.872696 AGTGTGCGTCAATCAATATGGA 58.127 40.909 0.00 0.00 0.00 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.