Multiple sequence alignment - TraesCS2B01G248900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G248900 chr2B 100.000 2861 0 0 1 2861 256325451 256328311 0.000000e+00 5284.0
1 TraesCS2B01G248900 chr2B 97.442 430 10 1 1 429 117072057 117071628 0.000000e+00 732.0
2 TraesCS2B01G248900 chr2B 96.575 438 13 2 1 437 17154438 17154002 0.000000e+00 725.0
3 TraesCS2B01G248900 chr2B 93.220 59 2 2 429 487 286860735 286860679 5.080000e-13 86.1
4 TraesCS2B01G248900 chr2A 96.304 1407 28 10 850 2250 229671964 229673352 0.000000e+00 2289.0
5 TraesCS2B01G248900 chr2A 95.981 423 14 3 680 1099 229671531 229671953 0.000000e+00 684.0
6 TraesCS2B01G248900 chr2A 90.591 372 28 3 2496 2861 229673589 229673959 1.190000e-133 486.0
7 TraesCS2B01G248900 chr2A 90.426 282 23 3 473 751 229669924 229670204 4.500000e-98 368.0
8 TraesCS2B01G248900 chr2D 94.432 1347 33 13 1099 2445 202564838 202566142 0.000000e+00 2034.0
9 TraesCS2B01G248900 chr2D 92.773 595 31 6 473 1055 202563976 202564570 0.000000e+00 850.0
10 TraesCS2B01G248900 chr2D 95.388 412 18 1 2449 2860 202568096 202568506 0.000000e+00 654.0
11 TraesCS2B01G248900 chr1A 97.907 430 9 0 1 430 482776329 482776758 0.000000e+00 745.0
12 TraesCS2B01G248900 chr6A 97.209 430 12 0 1 430 346586931 346586502 0.000000e+00 728.0
13 TraesCS2B01G248900 chr6A 96.737 429 14 0 1 429 77787754 77788182 0.000000e+00 715.0
14 TraesCS2B01G248900 chr7A 94.977 438 22 0 1 438 703404955 703404518 0.000000e+00 688.0
15 TraesCS2B01G248900 chr7A 100.000 46 0 0 429 474 473642980 473642935 5.080000e-13 86.1
16 TraesCS2B01G248900 chr3D 95.581 430 17 2 1 429 583585936 583585508 0.000000e+00 688.0
17 TraesCS2B01G248900 chr7D 95.540 426 19 0 1 426 65773953 65773528 0.000000e+00 682.0
18 TraesCS2B01G248900 chr6D 94.713 435 23 0 1 435 38240169 38239735 0.000000e+00 676.0
19 TraesCS2B01G248900 chr6D 87.037 54 4 2 545 596 414342290 414342342 1.110000e-04 58.4
20 TraesCS2B01G248900 chrUn 100.000 47 0 0 429 475 304833638 304833684 1.410000e-13 87.9
21 TraesCS2B01G248900 chrUn 97.917 48 1 0 429 476 309059671 309059624 1.830000e-12 84.2
22 TraesCS2B01G248900 chrUn 100.000 45 0 0 429 473 341113292 341113336 1.830000e-12 84.2
23 TraesCS2B01G248900 chrUn 100.000 45 0 0 429 473 342545167 342545211 1.830000e-12 84.2
24 TraesCS2B01G248900 chr7B 100.000 46 0 0 429 474 617490792 617490837 5.080000e-13 86.1
25 TraesCS2B01G248900 chr5A 100.000 45 0 0 429 473 555170508 555170552 1.830000e-12 84.2
26 TraesCS2B01G248900 chr4A 96.078 51 2 0 429 479 250435845 250435795 1.830000e-12 84.2
27 TraesCS2B01G248900 chr3B 85.185 81 10 2 517 596 160353353 160353274 6.570000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G248900 chr2B 256325451 256328311 2860 False 5284.000000 5284 100.000000 1 2861 1 chr2B.!!$F1 2860
1 TraesCS2B01G248900 chr2A 229669924 229673959 4035 False 956.750000 2289 93.325500 473 2861 4 chr2A.!!$F1 2388
2 TraesCS2B01G248900 chr2D 202563976 202568506 4530 False 1179.333333 2034 94.197667 473 2860 3 chr2D.!!$F1 2387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.030501 AATCCTCATCCCACGGGGTA 60.031 55.0 1.28 0.0 44.74 3.69 F
236 237 0.031994 GACGTGTGGGCATTTTTGCT 59.968 50.0 0.00 0.0 34.73 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 3357 2.356433 TTGTTGCGGACGATGCGA 60.356 55.556 0.00 0.00 30.86 5.10 R
2159 4057 5.335897 GCAATTGAGAAATGGCAGTCTACAA 60.336 40.000 10.34 9.63 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.733556 TTTGACCATATGTGACAAGTAGTTAAT 57.266 29.630 1.24 0.00 0.00 1.40
27 28 8.942338 TGACCATATGTGACAAGTAGTTAATC 57.058 34.615 1.24 0.00 0.00 1.75
28 29 8.536175 TGACCATATGTGACAAGTAGTTAATCA 58.464 33.333 1.24 0.00 0.00 2.57
29 30 8.718102 ACCATATGTGACAAGTAGTTAATCAC 57.282 34.615 15.38 15.38 40.08 3.06
33 34 6.838198 TGTGACAAGTAGTTAATCACACAC 57.162 37.500 18.85 0.00 43.48 3.82
34 35 5.460748 TGTGACAAGTAGTTAATCACACACG 59.539 40.000 18.85 0.00 43.48 4.49
35 36 4.986034 TGACAAGTAGTTAATCACACACGG 59.014 41.667 0.00 0.00 0.00 4.94
36 37 3.744426 ACAAGTAGTTAATCACACACGGC 59.256 43.478 0.00 0.00 0.00 5.68
37 38 3.671008 AGTAGTTAATCACACACGGCA 57.329 42.857 0.00 0.00 0.00 5.69
38 39 3.997762 AGTAGTTAATCACACACGGCAA 58.002 40.909 0.00 0.00 0.00 4.52
39 40 3.744426 AGTAGTTAATCACACACGGCAAC 59.256 43.478 0.00 0.00 0.00 4.17
40 41 2.846193 AGTTAATCACACACGGCAACT 58.154 42.857 0.00 0.00 0.00 3.16
41 42 3.997762 AGTTAATCACACACGGCAACTA 58.002 40.909 0.00 0.00 0.00 2.24
42 43 4.575885 AGTTAATCACACACGGCAACTAT 58.424 39.130 0.00 0.00 0.00 2.12
43 44 4.391830 AGTTAATCACACACGGCAACTATG 59.608 41.667 0.00 0.00 0.00 2.23
44 45 1.737838 ATCACACACGGCAACTATGG 58.262 50.000 0.00 0.00 0.00 2.74
45 46 0.394938 TCACACACGGCAACTATGGT 59.605 50.000 0.00 0.00 0.00 3.55
46 47 1.202710 TCACACACGGCAACTATGGTT 60.203 47.619 0.00 0.00 35.86 3.67
47 48 1.606668 CACACACGGCAACTATGGTTT 59.393 47.619 0.00 0.00 32.73 3.27
48 49 1.606668 ACACACGGCAACTATGGTTTG 59.393 47.619 0.00 0.00 32.73 2.93
49 50 1.876799 CACACGGCAACTATGGTTTGA 59.123 47.619 0.00 0.00 32.73 2.69
50 51 2.487762 CACACGGCAACTATGGTTTGAT 59.512 45.455 0.00 0.00 32.73 2.57
51 52 3.057596 CACACGGCAACTATGGTTTGATT 60.058 43.478 0.00 0.00 32.73 2.57
52 53 4.155099 CACACGGCAACTATGGTTTGATTA 59.845 41.667 0.00 0.00 32.73 1.75
53 54 4.155280 ACACGGCAACTATGGTTTGATTAC 59.845 41.667 0.00 0.00 32.73 1.89
54 55 4.155099 CACGGCAACTATGGTTTGATTACA 59.845 41.667 0.00 0.00 32.73 2.41
55 56 4.155280 ACGGCAACTATGGTTTGATTACAC 59.845 41.667 0.00 0.00 32.73 2.90
56 57 4.658071 GGCAACTATGGTTTGATTACACG 58.342 43.478 0.00 0.00 32.73 4.49
57 58 4.095610 GCAACTATGGTTTGATTACACGC 58.904 43.478 0.00 0.00 32.73 5.34
58 59 4.658071 CAACTATGGTTTGATTACACGCC 58.342 43.478 0.00 0.00 32.73 5.68
59 60 2.933906 ACTATGGTTTGATTACACGCCG 59.066 45.455 0.00 0.00 0.00 6.46
60 61 2.102070 ATGGTTTGATTACACGCCGA 57.898 45.000 0.00 0.00 0.00 5.54
61 62 1.880271 TGGTTTGATTACACGCCGAA 58.120 45.000 0.00 0.00 0.00 4.30
62 63 2.219458 TGGTTTGATTACACGCCGAAA 58.781 42.857 0.00 0.00 0.00 3.46
63 64 2.031857 TGGTTTGATTACACGCCGAAAC 60.032 45.455 0.00 0.00 0.00 2.78
64 65 2.224784 GGTTTGATTACACGCCGAAACT 59.775 45.455 0.00 0.00 0.00 2.66
65 66 3.432933 GGTTTGATTACACGCCGAAACTA 59.567 43.478 0.00 0.00 0.00 2.24
66 67 4.388790 GTTTGATTACACGCCGAAACTAC 58.611 43.478 0.00 0.00 0.00 2.73
67 68 2.609350 TGATTACACGCCGAAACTACC 58.391 47.619 0.00 0.00 0.00 3.18
68 69 2.029200 TGATTACACGCCGAAACTACCA 60.029 45.455 0.00 0.00 0.00 3.25
69 70 2.747396 TTACACGCCGAAACTACCAT 57.253 45.000 0.00 0.00 0.00 3.55
70 71 3.865011 TTACACGCCGAAACTACCATA 57.135 42.857 0.00 0.00 0.00 2.74
71 72 2.747396 ACACGCCGAAACTACCATAA 57.253 45.000 0.00 0.00 0.00 1.90
72 73 3.042871 ACACGCCGAAACTACCATAAA 57.957 42.857 0.00 0.00 0.00 1.40
73 74 3.602483 ACACGCCGAAACTACCATAAAT 58.398 40.909 0.00 0.00 0.00 1.40
74 75 4.004982 ACACGCCGAAACTACCATAAATT 58.995 39.130 0.00 0.00 0.00 1.82
75 76 5.177326 ACACGCCGAAACTACCATAAATTA 58.823 37.500 0.00 0.00 0.00 1.40
76 77 5.292589 ACACGCCGAAACTACCATAAATTAG 59.707 40.000 0.00 0.00 0.00 1.73
77 78 5.521010 CACGCCGAAACTACCATAAATTAGA 59.479 40.000 0.00 0.00 0.00 2.10
78 79 5.521372 ACGCCGAAACTACCATAAATTAGAC 59.479 40.000 0.00 0.00 0.00 2.59
79 80 5.521010 CGCCGAAACTACCATAAATTAGACA 59.479 40.000 0.00 0.00 0.00 3.41
80 81 6.202188 CGCCGAAACTACCATAAATTAGACAT 59.798 38.462 0.00 0.00 0.00 3.06
81 82 7.352739 GCCGAAACTACCATAAATTAGACATG 58.647 38.462 0.00 0.00 0.00 3.21
82 83 7.519970 GCCGAAACTACCATAAATTAGACATGG 60.520 40.741 0.00 0.00 44.04 3.66
83 84 7.352739 CGAAACTACCATAAATTAGACATGGC 58.647 38.462 0.00 0.00 42.54 4.40
84 85 7.011950 CGAAACTACCATAAATTAGACATGGCA 59.988 37.037 0.00 0.00 42.54 4.92
85 86 8.588290 AAACTACCATAAATTAGACATGGCAA 57.412 30.769 0.00 0.00 42.54 4.52
86 87 7.568199 ACTACCATAAATTAGACATGGCAAC 57.432 36.000 0.00 0.00 42.54 4.17
87 88 7.346471 ACTACCATAAATTAGACATGGCAACT 58.654 34.615 0.00 0.00 42.54 3.16
88 89 8.491134 ACTACCATAAATTAGACATGGCAACTA 58.509 33.333 0.00 0.00 42.54 2.24
89 90 7.568199 ACCATAAATTAGACATGGCAACTAC 57.432 36.000 0.00 0.00 42.54 2.73
90 91 7.116075 ACCATAAATTAGACATGGCAACTACA 58.884 34.615 0.00 0.00 42.54 2.74
91 92 7.283127 ACCATAAATTAGACATGGCAACTACAG 59.717 37.037 0.00 0.00 42.54 2.74
92 93 7.283127 CCATAAATTAGACATGGCAACTACAGT 59.717 37.037 0.00 0.00 33.29 3.55
93 94 8.677300 CATAAATTAGACATGGCAACTACAGTT 58.323 33.333 0.00 0.00 39.12 3.16
94 95 9.899661 ATAAATTAGACATGGCAACTACAGTTA 57.100 29.630 0.00 0.00 36.32 2.24
95 96 8.630054 AAATTAGACATGGCAACTACAGTTAA 57.370 30.769 0.00 0.00 36.32 2.01
96 97 8.807948 AATTAGACATGGCAACTACAGTTAAT 57.192 30.769 0.00 0.00 36.32 1.40
97 98 7.843490 TTAGACATGGCAACTACAGTTAATC 57.157 36.000 0.00 0.00 36.32 1.75
98 99 5.804639 AGACATGGCAACTACAGTTAATCA 58.195 37.500 0.00 0.00 36.32 2.57
99 100 6.237901 AGACATGGCAACTACAGTTAATCAA 58.762 36.000 0.00 0.00 36.32 2.57
100 101 6.714810 AGACATGGCAACTACAGTTAATCAAA 59.285 34.615 0.00 0.00 36.32 2.69
101 102 7.230510 AGACATGGCAACTACAGTTAATCAAAA 59.769 33.333 0.00 0.00 36.32 2.44
102 103 7.145323 ACATGGCAACTACAGTTAATCAAAAC 58.855 34.615 0.00 0.00 36.32 2.43
103 104 6.701145 TGGCAACTACAGTTAATCAAAACA 57.299 33.333 0.00 0.00 36.32 2.83
104 105 6.734137 TGGCAACTACAGTTAATCAAAACAG 58.266 36.000 0.00 0.00 36.32 3.16
105 106 6.544197 TGGCAACTACAGTTAATCAAAACAGA 59.456 34.615 0.00 0.00 36.32 3.41
106 107 7.230510 TGGCAACTACAGTTAATCAAAACAGAT 59.769 33.333 0.00 0.00 36.32 2.90
107 108 8.726988 GGCAACTACAGTTAATCAAAACAGATA 58.273 33.333 0.00 0.00 36.32 1.98
108 109 9.760660 GCAACTACAGTTAATCAAAACAGATAG 57.239 33.333 0.00 0.00 36.32 2.08
114 115 8.507249 ACAGTTAATCAAAACAGATAGAGTTGC 58.493 33.333 0.00 0.00 0.00 4.17
115 116 7.965107 CAGTTAATCAAAACAGATAGAGTTGCC 59.035 37.037 0.00 0.00 0.00 4.52
116 117 7.665559 AGTTAATCAAAACAGATAGAGTTGCCA 59.334 33.333 0.00 0.00 0.00 4.92
117 118 8.462016 GTTAATCAAAACAGATAGAGTTGCCAT 58.538 33.333 0.00 0.00 0.00 4.40
118 119 5.885230 TCAAAACAGATAGAGTTGCCATG 57.115 39.130 0.00 0.00 0.00 3.66
119 120 4.156556 TCAAAACAGATAGAGTTGCCATGC 59.843 41.667 0.00 0.00 0.00 4.06
120 121 3.641434 AACAGATAGAGTTGCCATGCT 57.359 42.857 0.00 0.00 0.00 3.79
121 122 3.641434 ACAGATAGAGTTGCCATGCTT 57.359 42.857 0.00 0.00 0.00 3.91
122 123 3.960571 ACAGATAGAGTTGCCATGCTTT 58.039 40.909 0.00 0.00 0.00 3.51
123 124 4.338879 ACAGATAGAGTTGCCATGCTTTT 58.661 39.130 0.00 0.00 0.00 2.27
124 125 5.500234 ACAGATAGAGTTGCCATGCTTTTA 58.500 37.500 0.00 0.00 0.00 1.52
125 126 5.355350 ACAGATAGAGTTGCCATGCTTTTAC 59.645 40.000 0.00 0.00 0.00 2.01
126 127 5.355071 CAGATAGAGTTGCCATGCTTTTACA 59.645 40.000 0.00 0.00 0.00 2.41
127 128 5.945784 AGATAGAGTTGCCATGCTTTTACAA 59.054 36.000 0.00 0.00 0.00 2.41
128 129 4.243007 AGAGTTGCCATGCTTTTACAAC 57.757 40.909 0.00 0.00 40.65 3.32
131 132 5.121221 AGTTGCCATGCTTTTACAACTAC 57.879 39.130 4.97 0.00 46.66 2.73
132 133 4.582656 AGTTGCCATGCTTTTACAACTACA 59.417 37.500 4.97 0.00 46.66 2.74
133 134 4.497473 TGCCATGCTTTTACAACTACAC 57.503 40.909 0.00 0.00 0.00 2.90
134 135 4.141287 TGCCATGCTTTTACAACTACACT 58.859 39.130 0.00 0.00 0.00 3.55
135 136 4.582656 TGCCATGCTTTTACAACTACACTT 59.417 37.500 0.00 0.00 0.00 3.16
136 137 4.917415 GCCATGCTTTTACAACTACACTTG 59.083 41.667 0.00 0.00 0.00 3.16
137 138 4.917415 CCATGCTTTTACAACTACACTTGC 59.083 41.667 0.00 0.00 0.00 4.01
138 139 4.561735 TGCTTTTACAACTACACTTGCC 57.438 40.909 0.00 0.00 0.00 4.52
139 140 3.948473 TGCTTTTACAACTACACTTGCCA 59.052 39.130 0.00 0.00 0.00 4.92
140 141 4.582656 TGCTTTTACAACTACACTTGCCAT 59.417 37.500 0.00 0.00 0.00 4.40
141 142 5.154222 GCTTTTACAACTACACTTGCCATC 58.846 41.667 0.00 0.00 0.00 3.51
142 143 5.699097 TTTTACAACTACACTTGCCATCC 57.301 39.130 0.00 0.00 0.00 3.51
143 144 2.200373 ACAACTACACTTGCCATCCC 57.800 50.000 0.00 0.00 0.00 3.85
144 145 1.086696 CAACTACACTTGCCATCCCG 58.913 55.000 0.00 0.00 0.00 5.14
145 146 0.035439 AACTACACTTGCCATCCCGG 60.035 55.000 0.00 0.00 38.11 5.73
146 147 0.907704 ACTACACTTGCCATCCCGGA 60.908 55.000 0.73 0.00 36.56 5.14
147 148 0.469917 CTACACTTGCCATCCCGGAT 59.530 55.000 0.73 0.00 36.56 4.18
148 149 0.180171 TACACTTGCCATCCCGGATG 59.820 55.000 19.26 19.26 39.52 3.51
149 150 1.224315 CACTTGCCATCCCGGATGA 59.776 57.895 26.49 6.84 42.09 2.92
150 151 1.097547 CACTTGCCATCCCGGATGAC 61.098 60.000 26.49 17.11 42.09 3.06
151 152 1.274703 ACTTGCCATCCCGGATGACT 61.275 55.000 26.49 0.00 42.09 3.41
152 153 0.758734 CTTGCCATCCCGGATGACTA 59.241 55.000 26.49 12.64 42.09 2.59
153 154 0.468226 TTGCCATCCCGGATGACTAC 59.532 55.000 26.49 13.89 42.09 2.73
154 155 0.689412 TGCCATCCCGGATGACTACA 60.689 55.000 26.49 15.98 42.09 2.74
155 156 0.687354 GCCATCCCGGATGACTACAT 59.313 55.000 26.49 0.00 42.09 2.29
167 168 3.961480 TGACTACATCTGTCAACCAGG 57.039 47.619 0.00 0.00 40.89 4.45
168 169 3.506398 TGACTACATCTGTCAACCAGGA 58.494 45.455 0.00 0.00 40.89 3.86
169 170 4.096681 TGACTACATCTGTCAACCAGGAT 58.903 43.478 0.00 0.00 40.89 3.24
170 171 4.081476 TGACTACATCTGTCAACCAGGATG 60.081 45.833 0.00 0.00 40.89 3.51
185 186 3.889815 CAGGATGGCAACTAAATCCTCA 58.110 45.455 2.11 0.00 45.76 3.86
186 187 4.467769 CAGGATGGCAACTAAATCCTCAT 58.532 43.478 2.11 0.00 45.76 2.90
187 188 4.518211 CAGGATGGCAACTAAATCCTCATC 59.482 45.833 2.11 0.00 45.76 2.92
188 189 3.823304 GGATGGCAACTAAATCCTCATCC 59.177 47.826 0.00 0.00 41.24 3.51
189 190 3.297134 TGGCAACTAAATCCTCATCCC 57.703 47.619 0.00 0.00 37.61 3.85
190 191 2.580322 TGGCAACTAAATCCTCATCCCA 59.420 45.455 0.00 0.00 37.61 4.37
191 192 2.952310 GGCAACTAAATCCTCATCCCAC 59.048 50.000 0.00 0.00 0.00 4.61
192 193 2.614057 GCAACTAAATCCTCATCCCACG 59.386 50.000 0.00 0.00 0.00 4.94
193 194 3.206150 CAACTAAATCCTCATCCCACGG 58.794 50.000 0.00 0.00 0.00 4.94
194 195 1.768870 ACTAAATCCTCATCCCACGGG 59.231 52.381 0.00 0.00 0.00 5.28
195 196 1.072331 CTAAATCCTCATCCCACGGGG 59.928 57.143 0.00 0.00 46.11 5.73
196 197 0.919289 AAATCCTCATCCCACGGGGT 60.919 55.000 1.28 0.00 44.74 4.95
197 198 0.030501 AATCCTCATCCCACGGGGTA 60.031 55.000 1.28 0.00 44.74 3.69
198 199 0.763223 ATCCTCATCCCACGGGGTAC 60.763 60.000 1.28 0.00 44.74 3.34
212 213 3.247033 GGTACCTAACGTAGCTGCG 57.753 57.895 23.12 23.12 41.39 5.18
214 215 1.532713 GGTACCTAACGTAGCTGCGTC 60.533 57.143 29.76 15.78 45.00 5.19
215 216 1.131126 GTACCTAACGTAGCTGCGTCA 59.869 52.381 29.76 15.78 45.00 4.35
216 217 0.170561 ACCTAACGTAGCTGCGTCAG 59.829 55.000 29.76 24.49 45.00 3.51
217 218 0.525668 CCTAACGTAGCTGCGTCAGG 60.526 60.000 28.87 28.87 42.97 3.86
218 219 0.450583 CTAACGTAGCTGCGTCAGGA 59.549 55.000 29.76 14.37 45.00 3.86
219 220 0.169672 TAACGTAGCTGCGTCAGGAC 59.830 55.000 29.76 0.00 45.00 3.85
229 230 2.347490 GTCAGGACGTGTGGGCAT 59.653 61.111 0.00 0.00 0.00 4.40
230 231 1.302511 GTCAGGACGTGTGGGCATT 60.303 57.895 0.00 0.00 0.00 3.56
231 232 0.889186 GTCAGGACGTGTGGGCATTT 60.889 55.000 0.00 0.00 0.00 2.32
232 233 0.179004 TCAGGACGTGTGGGCATTTT 60.179 50.000 0.00 0.00 0.00 1.82
233 234 0.673437 CAGGACGTGTGGGCATTTTT 59.327 50.000 0.00 0.00 0.00 1.94
234 235 0.673437 AGGACGTGTGGGCATTTTTG 59.327 50.000 0.00 0.00 0.00 2.44
235 236 0.943835 GGACGTGTGGGCATTTTTGC 60.944 55.000 0.00 0.00 0.00 3.68
236 237 0.031994 GACGTGTGGGCATTTTTGCT 59.968 50.000 0.00 0.00 34.73 3.91
237 238 0.463620 ACGTGTGGGCATTTTTGCTT 59.536 45.000 0.00 0.00 34.73 3.91
238 239 1.139163 CGTGTGGGCATTTTTGCTTC 58.861 50.000 0.00 0.00 34.73 3.86
239 240 1.139163 GTGTGGGCATTTTTGCTTCG 58.861 50.000 0.00 0.00 34.73 3.79
240 241 0.749649 TGTGGGCATTTTTGCTTCGT 59.250 45.000 0.00 0.00 34.73 3.85
241 242 1.139163 GTGGGCATTTTTGCTTCGTG 58.861 50.000 0.00 0.00 34.73 4.35
242 243 0.599728 TGGGCATTTTTGCTTCGTGC 60.600 50.000 0.00 0.00 43.25 5.34
244 245 2.897780 GCATTTTTGCTTCGTGCCA 58.102 47.368 1.30 0.00 42.00 4.92
245 246 0.508213 GCATTTTTGCTTCGTGCCAC 59.492 50.000 1.30 0.00 42.00 5.01
246 247 1.850377 CATTTTTGCTTCGTGCCACA 58.150 45.000 0.00 0.00 42.00 4.17
247 248 1.522258 CATTTTTGCTTCGTGCCACAC 59.478 47.619 0.00 0.00 42.00 3.82
262 263 4.082523 CACGCACGGGGTGGAGAT 62.083 66.667 11.54 0.00 41.72 2.75
263 264 4.082523 ACGCACGGGGTGGAGATG 62.083 66.667 0.00 0.00 33.64 2.90
264 265 3.770040 CGCACGGGGTGGAGATGA 61.770 66.667 0.00 0.00 33.64 2.92
265 266 2.187946 GCACGGGGTGGAGATGAG 59.812 66.667 0.00 0.00 33.64 2.90
266 267 2.660064 GCACGGGGTGGAGATGAGT 61.660 63.158 0.00 0.00 33.64 3.41
267 268 1.327690 GCACGGGGTGGAGATGAGTA 61.328 60.000 0.00 0.00 33.64 2.59
268 269 0.747255 CACGGGGTGGAGATGAGTAG 59.253 60.000 0.00 0.00 0.00 2.57
269 270 0.335361 ACGGGGTGGAGATGAGTAGT 59.665 55.000 0.00 0.00 0.00 2.73
270 271 1.567649 ACGGGGTGGAGATGAGTAGTA 59.432 52.381 0.00 0.00 0.00 1.82
271 272 2.177233 ACGGGGTGGAGATGAGTAGTAT 59.823 50.000 0.00 0.00 0.00 2.12
272 273 3.231818 CGGGGTGGAGATGAGTAGTATT 58.768 50.000 0.00 0.00 0.00 1.89
273 274 3.641906 CGGGGTGGAGATGAGTAGTATTT 59.358 47.826 0.00 0.00 0.00 1.40
274 275 4.501571 CGGGGTGGAGATGAGTAGTATTTG 60.502 50.000 0.00 0.00 0.00 2.32
275 276 4.409247 GGGGTGGAGATGAGTAGTATTTGT 59.591 45.833 0.00 0.00 0.00 2.83
276 277 5.104485 GGGGTGGAGATGAGTAGTATTTGTT 60.104 44.000 0.00 0.00 0.00 2.83
277 278 5.817816 GGGTGGAGATGAGTAGTATTTGTTG 59.182 44.000 0.00 0.00 0.00 3.33
278 279 5.817816 GGTGGAGATGAGTAGTATTTGTTGG 59.182 44.000 0.00 0.00 0.00 3.77
279 280 5.817816 GTGGAGATGAGTAGTATTTGTTGGG 59.182 44.000 0.00 0.00 0.00 4.12
280 281 4.816925 GGAGATGAGTAGTATTTGTTGGGC 59.183 45.833 0.00 0.00 0.00 5.36
281 282 4.442706 AGATGAGTAGTATTTGTTGGGCG 58.557 43.478 0.00 0.00 0.00 6.13
282 283 3.688694 TGAGTAGTATTTGTTGGGCGT 57.311 42.857 0.00 0.00 0.00 5.68
283 284 3.331150 TGAGTAGTATTTGTTGGGCGTG 58.669 45.455 0.00 0.00 0.00 5.34
284 285 3.244284 TGAGTAGTATTTGTTGGGCGTGT 60.244 43.478 0.00 0.00 0.00 4.49
285 286 3.071479 AGTAGTATTTGTTGGGCGTGTG 58.929 45.455 0.00 0.00 0.00 3.82
286 287 1.243902 AGTATTTGTTGGGCGTGTGG 58.756 50.000 0.00 0.00 0.00 4.17
287 288 0.388006 GTATTTGTTGGGCGTGTGGC 60.388 55.000 0.00 0.00 42.51 5.01
288 289 0.823769 TATTTGTTGGGCGTGTGGCA 60.824 50.000 0.00 0.00 46.16 4.92
307 308 4.752879 GAAGTAGCCGCGCCCACA 62.753 66.667 0.00 0.00 0.00 4.17
321 322 4.942090 CACACGTGTGGGCAATTC 57.058 55.556 35.65 0.00 42.10 2.17
322 323 2.330254 CACACGTGTGGGCAATTCT 58.670 52.632 35.65 1.12 42.10 2.40
323 324 1.518325 CACACGTGTGGGCAATTCTA 58.482 50.000 35.65 0.00 42.10 2.10
324 325 1.876799 CACACGTGTGGGCAATTCTAA 59.123 47.619 35.65 0.00 42.10 2.10
325 326 2.487762 CACACGTGTGGGCAATTCTAAT 59.512 45.455 35.65 0.00 42.10 1.73
326 327 2.487762 ACACGTGTGGGCAATTCTAATG 59.512 45.455 22.71 0.00 34.19 1.90
327 328 2.487762 CACGTGTGGGCAATTCTAATGT 59.512 45.455 7.58 0.00 0.00 2.71
328 329 2.747446 ACGTGTGGGCAATTCTAATGTC 59.253 45.455 0.00 0.00 0.00 3.06
329 330 2.097466 CGTGTGGGCAATTCTAATGTCC 59.903 50.000 0.00 0.00 43.01 4.02
330 331 2.097466 GTGTGGGCAATTCTAATGTCCG 59.903 50.000 0.00 0.00 45.71 4.79
331 332 1.065551 GTGGGCAATTCTAATGTCCGC 59.934 52.381 0.00 0.00 45.71 5.54
332 333 0.668535 GGGCAATTCTAATGTCCGCC 59.331 55.000 0.00 0.00 31.99 6.13
333 334 0.668535 GGCAATTCTAATGTCCGCCC 59.331 55.000 0.00 0.00 31.76 6.13
334 335 1.388547 GCAATTCTAATGTCCGCCCA 58.611 50.000 0.00 0.00 0.00 5.36
335 336 1.065551 GCAATTCTAATGTCCGCCCAC 59.934 52.381 0.00 0.00 0.00 4.61
336 337 2.364632 CAATTCTAATGTCCGCCCACA 58.635 47.619 0.00 0.00 0.00 4.17
337 338 2.038387 ATTCTAATGTCCGCCCACAC 57.962 50.000 0.00 0.00 0.00 3.82
338 339 0.687920 TTCTAATGTCCGCCCACACA 59.312 50.000 0.00 0.00 0.00 3.72
339 340 0.036765 TCTAATGTCCGCCCACACAC 60.037 55.000 0.00 0.00 0.00 3.82
340 341 1.358725 CTAATGTCCGCCCACACACG 61.359 60.000 0.00 0.00 0.00 4.49
364 365 4.792804 GTGGGCTGCCTCCTGCTC 62.793 72.222 19.68 0.00 42.00 4.26
366 367 4.792804 GGGCTGCCTCCTGCTCAC 62.793 72.222 19.68 0.00 42.00 3.51
367 368 4.025858 GGCTGCCTCCTGCTCACA 62.026 66.667 12.43 0.00 42.00 3.58
368 369 2.745492 GCTGCCTCCTGCTCACAC 60.745 66.667 0.00 0.00 42.00 3.82
369 370 2.046507 CTGCCTCCTGCTCACACC 60.047 66.667 0.00 0.00 42.00 4.16
370 371 2.848679 TGCCTCCTGCTCACACCA 60.849 61.111 0.00 0.00 42.00 4.17
371 372 2.359230 GCCTCCTGCTCACACCAC 60.359 66.667 0.00 0.00 36.87 4.16
372 373 3.150949 CCTCCTGCTCACACCACA 58.849 61.111 0.00 0.00 0.00 4.17
373 374 1.302033 CCTCCTGCTCACACCACAC 60.302 63.158 0.00 0.00 0.00 3.82
374 375 1.447217 CTCCTGCTCACACCACACA 59.553 57.895 0.00 0.00 0.00 3.72
375 376 0.882042 CTCCTGCTCACACCACACAC 60.882 60.000 0.00 0.00 0.00 3.82
376 377 2.246739 CCTGCTCACACCACACACG 61.247 63.158 0.00 0.00 0.00 4.49
377 378 2.203001 TGCTCACACCACACACGG 60.203 61.111 0.00 0.00 0.00 4.94
378 379 2.203015 GCTCACACCACACACGGT 60.203 61.111 0.00 0.00 41.07 4.83
393 394 3.737172 GGTGTGTGGGCGCATGTC 61.737 66.667 10.83 1.35 37.46 3.06
394 395 4.088762 GTGTGTGGGCGCATGTCG 62.089 66.667 10.83 5.35 37.46 4.35
395 396 4.617520 TGTGTGGGCGCATGTCGT 62.618 61.111 10.83 0.00 41.07 4.34
396 397 2.433491 GTGTGGGCGCATGTCGTA 60.433 61.111 10.83 0.00 41.07 3.43
397 398 1.813753 GTGTGGGCGCATGTCGTAT 60.814 57.895 10.83 0.00 41.07 3.06
398 399 0.528901 GTGTGGGCGCATGTCGTATA 60.529 55.000 10.83 0.00 41.07 1.47
399 400 0.391228 TGTGGGCGCATGTCGTATAT 59.609 50.000 10.83 0.00 41.07 0.86
400 401 0.790207 GTGGGCGCATGTCGTATATG 59.210 55.000 10.83 0.00 41.07 1.78
401 402 0.948623 TGGGCGCATGTCGTATATGC 60.949 55.000 10.83 9.96 45.64 3.14
402 403 1.635663 GGGCGCATGTCGTATATGCC 61.636 60.000 10.83 10.30 46.20 4.40
403 404 0.948623 GGCGCATGTCGTATATGCCA 60.949 55.000 10.83 0.00 46.20 4.92
404 405 0.163788 GCGCATGTCGTATATGCCAC 59.836 55.000 0.30 5.14 46.20 5.01
405 406 1.496934 CGCATGTCGTATATGCCACA 58.503 50.000 12.93 0.00 46.20 4.17
406 407 1.192312 CGCATGTCGTATATGCCACAC 59.808 52.381 12.93 0.00 46.20 3.82
407 408 1.192312 GCATGTCGTATATGCCACACG 59.808 52.381 9.16 0.00 43.88 4.49
408 409 2.469826 CATGTCGTATATGCCACACGT 58.530 47.619 0.00 0.00 37.02 4.49
409 410 1.915952 TGTCGTATATGCCACACGTG 58.084 50.000 15.48 15.48 37.02 4.49
410 411 1.202817 TGTCGTATATGCCACACGTGT 59.797 47.619 17.22 17.22 37.02 4.49
411 412 1.586578 GTCGTATATGCCACACGTGTG 59.413 52.381 36.13 36.13 45.23 3.82
421 422 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
422 423 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
423 424 1.740296 ACGTGTGGCAGTTATCGGC 60.740 57.895 0.00 0.00 0.00 5.54
424 425 2.798501 CGTGTGGCAGTTATCGGCG 61.799 63.158 0.00 0.00 35.70 6.46
425 426 1.740296 GTGTGGCAGTTATCGGCGT 60.740 57.895 6.85 0.00 35.70 5.68
426 427 1.447140 TGTGGCAGTTATCGGCGTC 60.447 57.895 6.85 0.00 35.70 5.19
427 428 2.171725 GTGGCAGTTATCGGCGTCC 61.172 63.158 6.85 0.00 35.70 4.79
428 429 2.355986 TGGCAGTTATCGGCGTCCT 61.356 57.895 6.85 0.00 35.70 3.85
429 430 1.153429 GGCAGTTATCGGCGTCCTT 60.153 57.895 6.85 0.00 35.70 3.36
430 431 0.103572 GGCAGTTATCGGCGTCCTTA 59.896 55.000 6.85 0.00 35.70 2.69
431 432 1.472026 GGCAGTTATCGGCGTCCTTAA 60.472 52.381 6.85 0.00 35.70 1.85
432 433 2.480845 GCAGTTATCGGCGTCCTTAAT 58.519 47.619 6.85 0.00 0.00 1.40
433 434 2.870411 GCAGTTATCGGCGTCCTTAATT 59.130 45.455 6.85 0.00 0.00 1.40
434 435 3.311596 GCAGTTATCGGCGTCCTTAATTT 59.688 43.478 6.85 0.00 0.00 1.82
435 436 4.508861 GCAGTTATCGGCGTCCTTAATTTA 59.491 41.667 6.85 0.00 0.00 1.40
436 437 5.006941 GCAGTTATCGGCGTCCTTAATTTAA 59.993 40.000 6.85 0.00 0.00 1.52
437 438 6.457257 GCAGTTATCGGCGTCCTTAATTTAAA 60.457 38.462 6.85 0.00 0.00 1.52
438 439 7.123830 CAGTTATCGGCGTCCTTAATTTAAAG 58.876 38.462 6.85 0.00 0.00 1.85
439 440 4.547406 ATCGGCGTCCTTAATTTAAAGC 57.453 40.909 6.85 0.00 0.00 3.51
440 441 2.679336 TCGGCGTCCTTAATTTAAAGCC 59.321 45.455 6.85 11.46 39.89 4.35
441 442 3.060978 GGCGTCCTTAATTTAAAGCCG 57.939 47.619 0.00 0.00 33.66 5.52
442 443 2.223409 GGCGTCCTTAATTTAAAGCCGG 60.223 50.000 0.00 0.00 33.66 6.13
443 444 2.679336 GCGTCCTTAATTTAAAGCCGGA 59.321 45.455 5.05 0.00 0.00 5.14
444 445 3.486375 GCGTCCTTAATTTAAAGCCGGAC 60.486 47.826 5.05 12.20 36.87 4.79
445 446 4.268767 GTCCTTAATTTAAAGCCGGACG 57.731 45.455 5.05 0.00 31.35 4.79
446 447 3.686241 GTCCTTAATTTAAAGCCGGACGT 59.314 43.478 5.05 0.00 31.35 4.34
447 448 3.934579 TCCTTAATTTAAAGCCGGACGTC 59.065 43.478 5.05 7.13 0.00 4.34
448 449 3.937079 CCTTAATTTAAAGCCGGACGTCT 59.063 43.478 16.46 0.00 0.00 4.18
449 450 4.033702 CCTTAATTTAAAGCCGGACGTCTC 59.966 45.833 16.46 4.72 0.00 3.36
450 451 3.329929 AATTTAAAGCCGGACGTCTCT 57.670 42.857 16.46 7.56 0.00 3.10
451 452 2.074547 TTTAAAGCCGGACGTCTCTG 57.925 50.000 16.46 5.79 0.00 3.35
452 453 1.250328 TTAAAGCCGGACGTCTCTGA 58.750 50.000 16.46 0.55 0.00 3.27
453 454 0.524862 TAAAGCCGGACGTCTCTGAC 59.475 55.000 16.46 0.00 0.00 3.51
499 500 2.033448 TTGAGGCGCCCGATTGTT 59.967 55.556 26.15 0.94 0.00 2.83
649 651 9.131791 GTGGATATTTATTTTTCCCAAGCTCTA 57.868 33.333 0.00 0.00 0.00 2.43
698 702 3.181494 ACATTTAGCCGGCCGAATTTAAC 60.181 43.478 30.73 6.52 0.00 2.01
765 2174 9.651913 AAAGAAAAACTAGCATGAACAGAAAAA 57.348 25.926 0.00 0.00 0.00 1.94
1239 3132 1.081092 CCCTCTGTTCCCTCTCCCA 59.919 63.158 0.00 0.00 0.00 4.37
1245 3138 0.898789 TGTTCCCTCTCCCACTCGTC 60.899 60.000 0.00 0.00 0.00 4.20
1918 3811 1.003233 GAGTTTGTGGAGGGTAGTGGG 59.997 57.143 0.00 0.00 0.00 4.61
2157 4055 6.019479 CGTATTTACTCATTGGTCAGCTCTTC 60.019 42.308 0.00 0.00 0.00 2.87
2159 4057 3.996921 ACTCATTGGTCAGCTCTTCAT 57.003 42.857 0.00 0.00 0.00 2.57
2183 4081 3.863142 AGACTGCCATTTCTCAATTGC 57.137 42.857 0.00 0.00 32.67 3.56
2209 4107 1.805943 CGTTGTCTGACATGATTGGCA 59.194 47.619 11.86 0.00 39.06 4.92
2315 4213 5.135508 AGTTCTACTAAGTGTGCGTCAAT 57.864 39.130 0.00 0.00 0.00 2.57
2316 4214 5.162075 AGTTCTACTAAGTGTGCGTCAATC 58.838 41.667 0.00 0.00 0.00 2.67
2317 4215 4.776795 TCTACTAAGTGTGCGTCAATCA 57.223 40.909 0.00 0.00 0.00 2.57
2318 4216 5.128992 TCTACTAAGTGTGCGTCAATCAA 57.871 39.130 0.00 0.00 0.00 2.57
2320 4218 6.859017 TCTACTAAGTGTGCGTCAATCAATA 58.141 36.000 0.00 0.00 0.00 1.90
2322 4220 6.349973 ACTAAGTGTGCGTCAATCAATATG 57.650 37.500 0.00 0.00 0.00 1.78
2323 4221 4.621068 AAGTGTGCGTCAATCAATATGG 57.379 40.909 0.00 0.00 0.00 2.74
2324 4222 3.872696 AGTGTGCGTCAATCAATATGGA 58.127 40.909 0.00 0.00 0.00 3.41
2325 4223 4.454678 AGTGTGCGTCAATCAATATGGAT 58.545 39.130 0.00 0.00 0.00 3.41
2326 4224 4.512944 AGTGTGCGTCAATCAATATGGATC 59.487 41.667 0.00 0.00 0.00 3.36
2327 4225 4.273235 GTGTGCGTCAATCAATATGGATCA 59.727 41.667 0.00 0.00 0.00 2.92
2328 4226 4.512571 TGTGCGTCAATCAATATGGATCAG 59.487 41.667 0.00 0.00 0.00 2.90
2329 4227 4.751600 GTGCGTCAATCAATATGGATCAGA 59.248 41.667 0.00 0.00 0.00 3.27
2330 4228 4.992951 TGCGTCAATCAATATGGATCAGAG 59.007 41.667 0.00 0.00 0.00 3.35
2331 4229 4.391216 GCGTCAATCAATATGGATCAGAGG 59.609 45.833 0.00 2.64 0.00 3.69
2332 4230 4.934001 CGTCAATCAATATGGATCAGAGGG 59.066 45.833 0.00 0.00 0.00 4.30
2333 4231 5.279657 CGTCAATCAATATGGATCAGAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
2334 4232 6.171921 GTCAATCAATATGGATCAGAGGGAG 58.828 44.000 0.00 0.00 0.00 4.30
2335 4233 5.848369 TCAATCAATATGGATCAGAGGGAGT 59.152 40.000 0.00 0.00 0.00 3.85
2336 4234 7.018769 TCAATCAATATGGATCAGAGGGAGTA 58.981 38.462 0.00 0.00 0.00 2.59
2337 4235 7.681598 TCAATCAATATGGATCAGAGGGAGTAT 59.318 37.037 0.00 0.00 0.00 2.12
2338 4236 6.864151 TCAATATGGATCAGAGGGAGTATG 57.136 41.667 0.00 0.00 0.00 2.39
2339 4237 6.326161 TCAATATGGATCAGAGGGAGTATGT 58.674 40.000 0.00 0.00 0.00 2.29
2340 4238 6.212187 TCAATATGGATCAGAGGGAGTATGTG 59.788 42.308 0.00 0.00 0.00 3.21
2341 4239 2.042464 TGGATCAGAGGGAGTATGTGC 58.958 52.381 0.00 0.00 0.00 4.57
2389 4287 2.445565 TCATGAGCTGTGTCTGTGTC 57.554 50.000 0.00 0.00 0.00 3.67
2390 4288 1.966354 TCATGAGCTGTGTCTGTGTCT 59.034 47.619 0.00 0.00 0.00 3.41
2393 4291 0.037790 GAGCTGTGTCTGTGTCTCCC 60.038 60.000 0.00 0.00 0.00 4.30
2395 4293 0.037790 GCTGTGTCTGTGTCTCCCTC 60.038 60.000 0.00 0.00 0.00 4.30
2396 4294 0.242286 CTGTGTCTGTGTCTCCCTCG 59.758 60.000 0.00 0.00 0.00 4.63
2397 4295 1.179174 TGTGTCTGTGTCTCCCTCGG 61.179 60.000 0.00 0.00 0.00 4.63
2399 4297 2.680352 TCTGTGTCTCCCTCGGCC 60.680 66.667 0.00 0.00 0.00 6.13
2400 4298 4.135153 CTGTGTCTCCCTCGGCCG 62.135 72.222 22.12 22.12 0.00 6.13
2402 4300 3.827898 GTGTCTCCCTCGGCCGAG 61.828 72.222 41.90 41.90 41.63 4.63
2415 4414 1.065928 GCCGAGACCAGTACATCCG 59.934 63.158 0.00 0.00 0.00 4.18
2434 4433 2.989840 CCGTCTGTTTAGCACTCTCTTG 59.010 50.000 0.00 0.00 0.00 3.02
2447 4446 6.917533 AGCACTCTCTTGTTTCCATAATTTG 58.082 36.000 0.00 0.00 0.00 2.32
2451 6400 7.535258 CACTCTCTTGTTTCCATAATTTGAACG 59.465 37.037 0.00 0.00 0.00 3.95
2473 6422 6.414732 ACGACAAGAATTATGAAATGGAGGA 58.585 36.000 0.00 0.00 0.00 3.71
2650 6599 5.221106 GCATCCAGATAAAAATGCAGCACTA 60.221 40.000 0.00 0.00 43.10 2.74
2779 6732 2.290367 CAGATGTTTTCTGCGTGTTGGA 59.710 45.455 0.00 0.00 45.16 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.733556 ATTAACTACTTGTCACATATGGTCAAA 57.266 29.630 7.80 0.00 0.00 2.69
1 2 9.378551 GATTAACTACTTGTCACATATGGTCAA 57.621 33.333 7.80 8.19 0.00 3.18
2 3 8.536175 TGATTAACTACTTGTCACATATGGTCA 58.464 33.333 7.80 0.38 0.00 4.02
3 4 8.818057 GTGATTAACTACTTGTCACATATGGTC 58.182 37.037 7.80 0.00 39.10 4.02
4 5 8.318412 TGTGATTAACTACTTGTCACATATGGT 58.682 33.333 7.80 0.00 42.82 3.55
5 6 8.716646 TGTGATTAACTACTTGTCACATATGG 57.283 34.615 7.80 0.00 42.82 2.74
10 11 5.460748 CGTGTGTGATTAACTACTTGTCACA 59.539 40.000 2.68 2.68 44.74 3.58
11 12 5.107607 CCGTGTGTGATTAACTACTTGTCAC 60.108 44.000 0.00 0.00 39.58 3.67
12 13 4.986034 CCGTGTGTGATTAACTACTTGTCA 59.014 41.667 0.00 0.00 0.00 3.58
13 14 4.143179 GCCGTGTGTGATTAACTACTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
14 15 3.744426 GCCGTGTGTGATTAACTACTTGT 59.256 43.478 0.00 0.00 0.00 3.16
15 16 3.743911 TGCCGTGTGTGATTAACTACTTG 59.256 43.478 0.00 0.00 0.00 3.16
16 17 3.997762 TGCCGTGTGTGATTAACTACTT 58.002 40.909 0.00 0.00 0.00 2.24
17 18 3.671008 TGCCGTGTGTGATTAACTACT 57.329 42.857 0.00 0.00 0.00 2.57
18 19 3.744426 AGTTGCCGTGTGTGATTAACTAC 59.256 43.478 0.00 0.00 0.00 2.73
19 20 3.997762 AGTTGCCGTGTGTGATTAACTA 58.002 40.909 0.00 0.00 0.00 2.24
20 21 2.846193 AGTTGCCGTGTGTGATTAACT 58.154 42.857 0.00 0.00 0.00 2.24
21 22 4.436852 CCATAGTTGCCGTGTGTGATTAAC 60.437 45.833 0.00 0.00 0.00 2.01
22 23 3.687212 CCATAGTTGCCGTGTGTGATTAA 59.313 43.478 0.00 0.00 0.00 1.40
23 24 3.266636 CCATAGTTGCCGTGTGTGATTA 58.733 45.455 0.00 0.00 0.00 1.75
24 25 2.083774 CCATAGTTGCCGTGTGTGATT 58.916 47.619 0.00 0.00 0.00 2.57
25 26 1.003118 ACCATAGTTGCCGTGTGTGAT 59.997 47.619 0.00 0.00 0.00 3.06
26 27 0.394938 ACCATAGTTGCCGTGTGTGA 59.605 50.000 0.00 0.00 0.00 3.58
27 28 1.234821 AACCATAGTTGCCGTGTGTG 58.765 50.000 0.00 0.00 33.97 3.82
28 29 1.606668 CAAACCATAGTTGCCGTGTGT 59.393 47.619 0.00 0.00 35.97 3.72
29 30 1.876799 TCAAACCATAGTTGCCGTGTG 59.123 47.619 0.00 0.00 35.97 3.82
30 31 2.264005 TCAAACCATAGTTGCCGTGT 57.736 45.000 0.00 0.00 35.97 4.49
31 32 3.848272 AATCAAACCATAGTTGCCGTG 57.152 42.857 0.00 0.00 35.97 4.94
32 33 4.155280 GTGTAATCAAACCATAGTTGCCGT 59.845 41.667 0.00 0.00 35.97 5.68
33 34 4.658071 GTGTAATCAAACCATAGTTGCCG 58.342 43.478 0.00 0.00 35.97 5.69
34 35 4.658071 CGTGTAATCAAACCATAGTTGCC 58.342 43.478 0.00 0.00 35.97 4.52
35 36 4.095610 GCGTGTAATCAAACCATAGTTGC 58.904 43.478 0.00 0.00 35.97 4.17
36 37 4.658071 GGCGTGTAATCAAACCATAGTTG 58.342 43.478 0.00 0.00 35.97 3.16
37 38 3.372822 CGGCGTGTAATCAAACCATAGTT 59.627 43.478 0.00 0.00 38.03 2.24
38 39 2.933906 CGGCGTGTAATCAAACCATAGT 59.066 45.455 0.00 0.00 0.00 2.12
39 40 3.191669 TCGGCGTGTAATCAAACCATAG 58.808 45.455 6.85 0.00 0.00 2.23
40 41 3.248495 TCGGCGTGTAATCAAACCATA 57.752 42.857 6.85 0.00 0.00 2.74
41 42 2.102070 TCGGCGTGTAATCAAACCAT 57.898 45.000 6.85 0.00 0.00 3.55
42 43 1.880271 TTCGGCGTGTAATCAAACCA 58.120 45.000 6.85 0.00 0.00 3.67
43 44 2.224784 AGTTTCGGCGTGTAATCAAACC 59.775 45.455 6.85 0.00 0.00 3.27
44 45 3.531262 AGTTTCGGCGTGTAATCAAAC 57.469 42.857 6.85 8.38 0.00 2.93
45 46 3.432933 GGTAGTTTCGGCGTGTAATCAAA 59.567 43.478 6.85 0.00 0.00 2.69
46 47 2.995258 GGTAGTTTCGGCGTGTAATCAA 59.005 45.455 6.85 0.00 0.00 2.57
47 48 2.029200 TGGTAGTTTCGGCGTGTAATCA 60.029 45.455 6.85 0.00 0.00 2.57
48 49 2.609350 TGGTAGTTTCGGCGTGTAATC 58.391 47.619 6.85 0.00 0.00 1.75
49 50 2.747396 TGGTAGTTTCGGCGTGTAAT 57.253 45.000 6.85 0.00 0.00 1.89
50 51 2.747396 ATGGTAGTTTCGGCGTGTAA 57.253 45.000 6.85 0.00 0.00 2.41
51 52 3.865011 TTATGGTAGTTTCGGCGTGTA 57.135 42.857 6.85 0.00 0.00 2.90
52 53 2.747396 TTATGGTAGTTTCGGCGTGT 57.253 45.000 6.85 0.00 0.00 4.49
53 54 4.609691 AATTTATGGTAGTTTCGGCGTG 57.390 40.909 6.85 0.00 0.00 5.34
54 55 5.521372 GTCTAATTTATGGTAGTTTCGGCGT 59.479 40.000 6.85 0.00 0.00 5.68
55 56 5.521010 TGTCTAATTTATGGTAGTTTCGGCG 59.479 40.000 0.00 0.00 0.00 6.46
56 57 6.913873 TGTCTAATTTATGGTAGTTTCGGC 57.086 37.500 0.00 0.00 0.00 5.54
57 58 7.519970 GCCATGTCTAATTTATGGTAGTTTCGG 60.520 40.741 0.00 0.00 42.60 4.30
58 59 7.011950 TGCCATGTCTAATTTATGGTAGTTTCG 59.988 37.037 0.00 0.00 42.60 3.46
59 60 8.220755 TGCCATGTCTAATTTATGGTAGTTTC 57.779 34.615 0.00 0.00 42.60 2.78
60 61 8.466798 GTTGCCATGTCTAATTTATGGTAGTTT 58.533 33.333 0.00 0.00 42.60 2.66
61 62 7.834181 AGTTGCCATGTCTAATTTATGGTAGTT 59.166 33.333 0.00 0.00 42.60 2.24
62 63 7.346471 AGTTGCCATGTCTAATTTATGGTAGT 58.654 34.615 0.00 0.00 42.60 2.73
63 64 7.807977 AGTTGCCATGTCTAATTTATGGTAG 57.192 36.000 0.00 0.00 42.60 3.18
64 65 8.268605 TGTAGTTGCCATGTCTAATTTATGGTA 58.731 33.333 0.00 0.00 42.60 3.25
65 66 7.116075 TGTAGTTGCCATGTCTAATTTATGGT 58.884 34.615 0.00 0.00 42.60 3.55
66 67 7.283127 ACTGTAGTTGCCATGTCTAATTTATGG 59.717 37.037 0.00 0.00 43.31 2.74
67 68 8.213518 ACTGTAGTTGCCATGTCTAATTTATG 57.786 34.615 0.00 0.00 0.00 1.90
68 69 8.807948 AACTGTAGTTGCCATGTCTAATTTAT 57.192 30.769 0.00 0.00 36.80 1.40
69 70 9.727859 TTAACTGTAGTTGCCATGTCTAATTTA 57.272 29.630 7.50 0.00 38.90 1.40
70 71 8.630054 TTAACTGTAGTTGCCATGTCTAATTT 57.370 30.769 7.50 0.00 38.90 1.82
71 72 8.807948 ATTAACTGTAGTTGCCATGTCTAATT 57.192 30.769 7.50 0.00 38.90 1.40
72 73 8.046708 TGATTAACTGTAGTTGCCATGTCTAAT 58.953 33.333 7.50 0.00 38.90 1.73
73 74 7.390823 TGATTAACTGTAGTTGCCATGTCTAA 58.609 34.615 7.50 0.00 38.90 2.10
74 75 6.941857 TGATTAACTGTAGTTGCCATGTCTA 58.058 36.000 7.50 0.00 38.90 2.59
75 76 5.804639 TGATTAACTGTAGTTGCCATGTCT 58.195 37.500 7.50 0.00 38.90 3.41
76 77 6.494893 TTGATTAACTGTAGTTGCCATGTC 57.505 37.500 7.50 0.00 38.90 3.06
77 78 6.892658 TTTGATTAACTGTAGTTGCCATGT 57.107 33.333 7.50 0.00 38.90 3.21
78 79 7.144661 TGTTTTGATTAACTGTAGTTGCCATG 58.855 34.615 7.50 0.00 38.90 3.66
79 80 7.230510 TCTGTTTTGATTAACTGTAGTTGCCAT 59.769 33.333 7.50 0.00 38.90 4.40
80 81 6.544197 TCTGTTTTGATTAACTGTAGTTGCCA 59.456 34.615 7.50 0.66 38.90 4.92
81 82 6.966021 TCTGTTTTGATTAACTGTAGTTGCC 58.034 36.000 7.50 0.00 38.90 4.52
82 83 9.760660 CTATCTGTTTTGATTAACTGTAGTTGC 57.239 33.333 7.50 0.00 38.90 4.17
88 89 8.507249 GCAACTCTATCTGTTTTGATTAACTGT 58.493 33.333 0.00 0.00 0.00 3.55
89 90 7.965107 GGCAACTCTATCTGTTTTGATTAACTG 59.035 37.037 0.00 0.00 0.00 3.16
90 91 7.665559 TGGCAACTCTATCTGTTTTGATTAACT 59.334 33.333 0.00 0.00 37.61 2.24
91 92 7.816640 TGGCAACTCTATCTGTTTTGATTAAC 58.183 34.615 0.00 0.00 37.61 2.01
92 93 7.994425 TGGCAACTCTATCTGTTTTGATTAA 57.006 32.000 0.00 0.00 37.61 1.40
93 94 7.415541 GCATGGCAACTCTATCTGTTTTGATTA 60.416 37.037 0.00 0.00 37.61 1.75
94 95 6.626623 GCATGGCAACTCTATCTGTTTTGATT 60.627 38.462 0.00 0.00 37.61 2.57
95 96 5.163581 GCATGGCAACTCTATCTGTTTTGAT 60.164 40.000 0.00 0.00 37.61 2.57
96 97 4.156556 GCATGGCAACTCTATCTGTTTTGA 59.843 41.667 0.00 0.00 37.61 2.69
97 98 4.157289 AGCATGGCAACTCTATCTGTTTTG 59.843 41.667 0.00 0.00 37.61 2.44
98 99 4.338879 AGCATGGCAACTCTATCTGTTTT 58.661 39.130 0.00 0.00 37.61 2.43
99 100 3.960571 AGCATGGCAACTCTATCTGTTT 58.039 40.909 0.00 0.00 37.61 2.83
100 101 3.641434 AGCATGGCAACTCTATCTGTT 57.359 42.857 0.00 0.00 37.61 3.16
101 102 3.641434 AAGCATGGCAACTCTATCTGT 57.359 42.857 0.00 0.00 37.61 3.41
102 103 4.978083 AAAAGCATGGCAACTCTATCTG 57.022 40.909 0.00 0.00 37.61 2.90
103 104 5.500234 TGTAAAAGCATGGCAACTCTATCT 58.500 37.500 0.00 0.00 37.61 1.98
104 105 5.818136 TGTAAAAGCATGGCAACTCTATC 57.182 39.130 0.00 0.00 37.61 2.08
105 106 5.711976 AGTTGTAAAAGCATGGCAACTCTAT 59.288 36.000 0.00 0.00 44.10 1.98
106 107 5.070001 AGTTGTAAAAGCATGGCAACTCTA 58.930 37.500 0.00 0.00 44.10 2.43
107 108 3.891366 AGTTGTAAAAGCATGGCAACTCT 59.109 39.130 0.00 0.00 44.10 3.24
108 109 4.243007 AGTTGTAAAAGCATGGCAACTC 57.757 40.909 0.00 0.00 44.10 3.01
110 111 4.679654 GTGTAGTTGTAAAAGCATGGCAAC 59.320 41.667 0.00 0.00 39.52 4.17
111 112 4.582656 AGTGTAGTTGTAAAAGCATGGCAA 59.417 37.500 0.00 0.00 0.00 4.52
112 113 4.141287 AGTGTAGTTGTAAAAGCATGGCA 58.859 39.130 0.00 0.00 0.00 4.92
113 114 4.766404 AGTGTAGTTGTAAAAGCATGGC 57.234 40.909 0.00 0.00 0.00 4.40
114 115 4.917415 GCAAGTGTAGTTGTAAAAGCATGG 59.083 41.667 0.00 0.00 0.00 3.66
115 116 4.917415 GGCAAGTGTAGTTGTAAAAGCATG 59.083 41.667 1.82 0.00 0.00 4.06
116 117 4.582656 TGGCAAGTGTAGTTGTAAAAGCAT 59.417 37.500 1.82 0.00 0.00 3.79
117 118 3.948473 TGGCAAGTGTAGTTGTAAAAGCA 59.052 39.130 1.82 0.00 0.00 3.91
118 119 4.561735 TGGCAAGTGTAGTTGTAAAAGC 57.438 40.909 1.82 0.00 0.00 3.51
119 120 5.335661 GGGATGGCAAGTGTAGTTGTAAAAG 60.336 44.000 0.00 0.00 0.00 2.27
120 121 4.521256 GGGATGGCAAGTGTAGTTGTAAAA 59.479 41.667 0.00 0.00 0.00 1.52
121 122 4.076394 GGGATGGCAAGTGTAGTTGTAAA 58.924 43.478 0.00 0.00 0.00 2.01
122 123 3.681593 GGGATGGCAAGTGTAGTTGTAA 58.318 45.455 0.00 0.00 0.00 2.41
123 124 2.354303 CGGGATGGCAAGTGTAGTTGTA 60.354 50.000 0.00 0.00 0.00 2.41
124 125 1.610624 CGGGATGGCAAGTGTAGTTGT 60.611 52.381 0.00 0.00 0.00 3.32
125 126 1.086696 CGGGATGGCAAGTGTAGTTG 58.913 55.000 0.00 0.00 0.00 3.16
126 127 0.035439 CCGGGATGGCAAGTGTAGTT 60.035 55.000 0.00 0.00 0.00 2.24
127 128 0.907704 TCCGGGATGGCAAGTGTAGT 60.908 55.000 0.00 0.00 37.80 2.73
128 129 0.469917 ATCCGGGATGGCAAGTGTAG 59.530 55.000 9.17 0.00 37.80 2.74
129 130 0.180171 CATCCGGGATGGCAAGTGTA 59.820 55.000 26.20 0.00 36.51 2.90
130 131 1.077501 CATCCGGGATGGCAAGTGT 60.078 57.895 26.20 0.00 36.51 3.55
131 132 1.097547 GTCATCCGGGATGGCAAGTG 61.098 60.000 31.40 10.63 43.31 3.16
132 133 1.224592 GTCATCCGGGATGGCAAGT 59.775 57.895 31.40 0.00 43.31 3.16
133 134 0.758734 TAGTCATCCGGGATGGCAAG 59.241 55.000 35.66 13.67 45.87 4.01
134 135 0.468226 GTAGTCATCCGGGATGGCAA 59.532 55.000 35.66 19.32 45.87 4.52
135 136 0.689412 TGTAGTCATCCGGGATGGCA 60.689 55.000 35.66 24.36 45.87 4.92
136 137 0.687354 ATGTAGTCATCCGGGATGGC 59.313 55.000 29.79 29.79 44.06 4.40
137 138 2.751166 GATGTAGTCATCCGGGATGG 57.249 55.000 31.23 16.25 43.15 3.51
157 158 0.478072 AGTTGCCATCCTGGTTGACA 59.522 50.000 6.33 0.00 40.46 3.58
158 159 2.489938 TAGTTGCCATCCTGGTTGAC 57.510 50.000 6.33 0.00 40.46 3.18
159 160 3.517296 TTTAGTTGCCATCCTGGTTGA 57.483 42.857 6.33 0.00 40.46 3.18
160 161 3.131046 GGATTTAGTTGCCATCCTGGTTG 59.869 47.826 0.00 0.00 40.46 3.77
161 162 3.011708 AGGATTTAGTTGCCATCCTGGTT 59.988 43.478 0.00 0.00 44.41 3.67
162 163 2.582636 AGGATTTAGTTGCCATCCTGGT 59.417 45.455 0.00 0.00 44.41 4.00
163 164 3.217626 GAGGATTTAGTTGCCATCCTGG 58.782 50.000 4.64 0.00 45.81 4.45
164 165 3.889815 TGAGGATTTAGTTGCCATCCTG 58.110 45.455 4.64 0.00 45.81 3.86
166 167 3.823304 GGATGAGGATTTAGTTGCCATCC 59.177 47.826 0.00 0.00 40.90 3.51
167 168 3.823304 GGGATGAGGATTTAGTTGCCATC 59.177 47.826 0.00 0.00 0.00 3.51
168 169 3.205056 TGGGATGAGGATTTAGTTGCCAT 59.795 43.478 0.00 0.00 0.00 4.40
169 170 2.580322 TGGGATGAGGATTTAGTTGCCA 59.420 45.455 0.00 0.00 0.00 4.92
170 171 2.952310 GTGGGATGAGGATTTAGTTGCC 59.048 50.000 0.00 0.00 0.00 4.52
171 172 2.614057 CGTGGGATGAGGATTTAGTTGC 59.386 50.000 0.00 0.00 0.00 4.17
172 173 3.206150 CCGTGGGATGAGGATTTAGTTG 58.794 50.000 0.00 0.00 0.00 3.16
173 174 2.172717 CCCGTGGGATGAGGATTTAGTT 59.827 50.000 0.00 0.00 37.50 2.24
174 175 1.768870 CCCGTGGGATGAGGATTTAGT 59.231 52.381 0.00 0.00 37.50 2.24
175 176 2.550830 CCCGTGGGATGAGGATTTAG 57.449 55.000 0.00 0.00 37.50 1.85
188 189 0.740737 CTACGTTAGGTACCCCGTGG 59.259 60.000 24.20 19.69 34.95 4.94
189 190 0.101219 GCTACGTTAGGTACCCCGTG 59.899 60.000 24.20 17.08 34.95 4.94
190 191 0.034089 AGCTACGTTAGGTACCCCGT 60.034 55.000 21.04 21.04 34.21 5.28
191 192 0.383231 CAGCTACGTTAGGTACCCCG 59.617 60.000 8.74 11.37 34.67 5.73
192 193 0.103755 GCAGCTACGTTAGGTACCCC 59.896 60.000 8.74 0.00 34.67 4.95
193 194 0.248784 CGCAGCTACGTTAGGTACCC 60.249 60.000 8.74 0.00 34.67 3.69
194 195 0.453390 ACGCAGCTACGTTAGGTACC 59.547 55.000 6.06 2.73 45.75 3.34
212 213 0.889186 AAATGCCCACACGTCCTGAC 60.889 55.000 0.00 0.00 0.00 3.51
213 214 0.179004 AAAATGCCCACACGTCCTGA 60.179 50.000 0.00 0.00 0.00 3.86
214 215 0.673437 AAAAATGCCCACACGTCCTG 59.327 50.000 0.00 0.00 0.00 3.86
215 216 0.673437 CAAAAATGCCCACACGTCCT 59.327 50.000 0.00 0.00 0.00 3.85
216 217 0.943835 GCAAAAATGCCCACACGTCC 60.944 55.000 0.00 0.00 0.00 4.79
217 218 0.031994 AGCAAAAATGCCCACACGTC 59.968 50.000 0.00 0.00 34.90 4.34
218 219 0.463620 AAGCAAAAATGCCCACACGT 59.536 45.000 0.00 0.00 34.90 4.49
219 220 1.139163 GAAGCAAAAATGCCCACACG 58.861 50.000 0.00 0.00 34.90 4.49
220 221 1.139163 CGAAGCAAAAATGCCCACAC 58.861 50.000 0.00 0.00 34.90 3.82
221 222 0.749649 ACGAAGCAAAAATGCCCACA 59.250 45.000 0.00 0.00 34.90 4.17
222 223 1.139163 CACGAAGCAAAAATGCCCAC 58.861 50.000 0.00 0.00 34.90 4.61
223 224 0.599728 GCACGAAGCAAAAATGCCCA 60.600 50.000 0.00 0.00 44.79 5.36
224 225 2.153039 GCACGAAGCAAAAATGCCC 58.847 52.632 0.00 0.00 44.79 5.36
245 246 4.082523 ATCTCCACCCCGTGCGTG 62.083 66.667 0.00 0.00 31.34 5.34
246 247 4.082523 CATCTCCACCCCGTGCGT 62.083 66.667 0.00 0.00 31.34 5.24
247 248 3.723235 CTCATCTCCACCCCGTGCG 62.723 68.421 0.00 0.00 31.34 5.34
248 249 1.327690 TACTCATCTCCACCCCGTGC 61.328 60.000 0.00 0.00 31.34 5.34
249 250 0.747255 CTACTCATCTCCACCCCGTG 59.253 60.000 0.00 0.00 0.00 4.94
250 251 0.335361 ACTACTCATCTCCACCCCGT 59.665 55.000 0.00 0.00 0.00 5.28
251 252 2.359981 TACTACTCATCTCCACCCCG 57.640 55.000 0.00 0.00 0.00 5.73
252 253 4.409247 ACAAATACTACTCATCTCCACCCC 59.591 45.833 0.00 0.00 0.00 4.95
253 254 5.615925 ACAAATACTACTCATCTCCACCC 57.384 43.478 0.00 0.00 0.00 4.61
254 255 5.817816 CCAACAAATACTACTCATCTCCACC 59.182 44.000 0.00 0.00 0.00 4.61
255 256 5.817816 CCCAACAAATACTACTCATCTCCAC 59.182 44.000 0.00 0.00 0.00 4.02
256 257 5.629133 GCCCAACAAATACTACTCATCTCCA 60.629 44.000 0.00 0.00 0.00 3.86
257 258 4.816925 GCCCAACAAATACTACTCATCTCC 59.183 45.833 0.00 0.00 0.00 3.71
258 259 4.508124 CGCCCAACAAATACTACTCATCTC 59.492 45.833 0.00 0.00 0.00 2.75
259 260 4.081087 ACGCCCAACAAATACTACTCATCT 60.081 41.667 0.00 0.00 0.00 2.90
260 261 4.034048 CACGCCCAACAAATACTACTCATC 59.966 45.833 0.00 0.00 0.00 2.92
261 262 3.938963 CACGCCCAACAAATACTACTCAT 59.061 43.478 0.00 0.00 0.00 2.90
262 263 3.244284 ACACGCCCAACAAATACTACTCA 60.244 43.478 0.00 0.00 0.00 3.41
263 264 3.124636 CACACGCCCAACAAATACTACTC 59.875 47.826 0.00 0.00 0.00 2.59
264 265 3.071479 CACACGCCCAACAAATACTACT 58.929 45.455 0.00 0.00 0.00 2.57
265 266 2.160813 CCACACGCCCAACAAATACTAC 59.839 50.000 0.00 0.00 0.00 2.73
266 267 2.428491 CCACACGCCCAACAAATACTA 58.572 47.619 0.00 0.00 0.00 1.82
267 268 1.243902 CCACACGCCCAACAAATACT 58.756 50.000 0.00 0.00 0.00 2.12
268 269 0.388006 GCCACACGCCCAACAAATAC 60.388 55.000 0.00 0.00 0.00 1.89
269 270 0.823769 TGCCACACGCCCAACAAATA 60.824 50.000 0.00 0.00 36.24 1.40
270 271 2.130426 TGCCACACGCCCAACAAAT 61.130 52.632 0.00 0.00 36.24 2.32
271 272 2.755876 TGCCACACGCCCAACAAA 60.756 55.556 0.00 0.00 36.24 2.83
272 273 3.522731 GTGCCACACGCCCAACAA 61.523 61.111 0.00 0.00 36.24 2.83
290 291 4.752879 TGTGGGCGCGGCTACTTC 62.753 66.667 40.02 21.79 0.00 3.01
304 305 1.518325 TAGAATTGCCCACACGTGTG 58.482 50.000 36.13 36.13 45.23 3.82
305 306 2.264005 TTAGAATTGCCCACACGTGT 57.736 45.000 17.22 17.22 0.00 4.49
306 307 2.487762 ACATTAGAATTGCCCACACGTG 59.512 45.455 15.48 15.48 0.00 4.49
307 308 2.747446 GACATTAGAATTGCCCACACGT 59.253 45.455 0.00 0.00 0.00 4.49
308 309 2.097466 GGACATTAGAATTGCCCACACG 59.903 50.000 0.00 0.00 0.00 4.49
309 310 2.097466 CGGACATTAGAATTGCCCACAC 59.903 50.000 0.00 0.00 0.00 3.82
310 311 2.364632 CGGACATTAGAATTGCCCACA 58.635 47.619 0.00 0.00 0.00 4.17
311 312 1.065551 GCGGACATTAGAATTGCCCAC 59.934 52.381 0.00 0.00 0.00 4.61
312 313 1.388547 GCGGACATTAGAATTGCCCA 58.611 50.000 0.00 0.00 0.00 5.36
313 314 0.668535 GGCGGACATTAGAATTGCCC 59.331 55.000 0.00 0.00 35.01 5.36
314 315 0.668535 GGGCGGACATTAGAATTGCC 59.331 55.000 0.00 0.00 40.25 4.52
315 316 1.065551 GTGGGCGGACATTAGAATTGC 59.934 52.381 0.00 0.00 0.00 3.56
316 317 2.097466 GTGTGGGCGGACATTAGAATTG 59.903 50.000 0.00 0.00 0.00 2.32
317 318 2.290641 TGTGTGGGCGGACATTAGAATT 60.291 45.455 0.00 0.00 0.00 2.17
318 319 1.280710 TGTGTGGGCGGACATTAGAAT 59.719 47.619 0.00 0.00 0.00 2.40
319 320 0.687920 TGTGTGGGCGGACATTAGAA 59.312 50.000 0.00 0.00 0.00 2.10
320 321 0.036765 GTGTGTGGGCGGACATTAGA 60.037 55.000 0.00 0.00 0.00 2.10
321 322 1.358725 CGTGTGTGGGCGGACATTAG 61.359 60.000 0.00 0.00 0.00 1.73
322 323 1.374885 CGTGTGTGGGCGGACATTA 60.375 57.895 0.00 0.00 0.00 1.90
323 324 2.668212 CGTGTGTGGGCGGACATT 60.668 61.111 0.00 0.00 0.00 2.71
354 355 2.359230 GTGGTGTGAGCAGGAGGC 60.359 66.667 0.00 0.00 45.30 4.70
355 356 1.302033 GTGTGGTGTGAGCAGGAGG 60.302 63.158 0.00 0.00 0.00 4.30
356 357 0.882042 GTGTGTGGTGTGAGCAGGAG 60.882 60.000 0.00 0.00 0.00 3.69
357 358 1.146041 GTGTGTGGTGTGAGCAGGA 59.854 57.895 0.00 0.00 0.00 3.86
358 359 2.246739 CGTGTGTGGTGTGAGCAGG 61.247 63.158 0.00 0.00 0.00 4.85
359 360 2.246739 CCGTGTGTGGTGTGAGCAG 61.247 63.158 0.00 0.00 0.00 4.24
360 361 2.203001 CCGTGTGTGGTGTGAGCA 60.203 61.111 0.00 0.00 0.00 4.26
361 362 2.203015 ACCGTGTGTGGTGTGAGC 60.203 61.111 0.00 0.00 41.85 4.26
376 377 3.737172 GACATGCGCCCACACACC 61.737 66.667 4.18 0.00 0.00 4.16
377 378 4.088762 CGACATGCGCCCACACAC 62.089 66.667 4.18 0.00 0.00 3.82
378 379 2.514510 ATACGACATGCGCCCACACA 62.515 55.000 4.18 0.00 46.04 3.72
379 380 0.528901 TATACGACATGCGCCCACAC 60.529 55.000 4.18 0.00 46.04 3.82
380 381 0.391228 ATATACGACATGCGCCCACA 59.609 50.000 4.18 0.00 46.04 4.17
381 382 0.790207 CATATACGACATGCGCCCAC 59.210 55.000 4.18 0.00 46.04 4.61
382 383 0.948623 GCATATACGACATGCGCCCA 60.949 55.000 4.18 0.00 46.04 5.36
383 384 1.787847 GCATATACGACATGCGCCC 59.212 57.895 4.18 0.00 46.04 6.13
387 388 1.192312 CGTGTGGCATATACGACATGC 59.808 52.381 14.07 10.70 45.42 4.06
388 389 2.218530 CACGTGTGGCATATACGACATG 59.781 50.000 22.41 8.34 45.42 3.21
389 390 2.159156 ACACGTGTGGCATATACGACAT 60.159 45.455 22.71 9.06 45.42 3.06
390 391 1.202817 ACACGTGTGGCATATACGACA 59.797 47.619 22.71 0.00 45.42 4.35
391 392 1.586578 CACACGTGTGGCATATACGAC 59.413 52.381 35.65 0.00 45.42 4.34
392 393 1.915952 CACACGTGTGGCATATACGA 58.084 50.000 35.65 0.00 45.42 3.43
402 403 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
403 404 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
404 405 1.966493 GCCGATAACTGCCACACGTG 61.966 60.000 15.48 15.48 0.00 4.49
405 406 1.740296 GCCGATAACTGCCACACGT 60.740 57.895 0.00 0.00 0.00 4.49
406 407 2.798501 CGCCGATAACTGCCACACG 61.799 63.158 0.00 0.00 0.00 4.49
407 408 1.693083 GACGCCGATAACTGCCACAC 61.693 60.000 0.00 0.00 0.00 3.82
408 409 1.447140 GACGCCGATAACTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
409 410 2.171725 GGACGCCGATAACTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
410 411 1.895020 AAGGACGCCGATAACTGCCA 61.895 55.000 0.00 0.00 0.00 4.92
411 412 0.103572 TAAGGACGCCGATAACTGCC 59.896 55.000 0.00 0.00 0.00 4.85
412 413 1.930567 TTAAGGACGCCGATAACTGC 58.069 50.000 0.00 0.00 0.00 4.40
413 414 6.592798 TTAAATTAAGGACGCCGATAACTG 57.407 37.500 0.00 0.00 0.00 3.16
414 415 6.238293 GCTTTAAATTAAGGACGCCGATAACT 60.238 38.462 0.00 0.00 0.00 2.24
415 416 5.905733 GCTTTAAATTAAGGACGCCGATAAC 59.094 40.000 0.00 0.00 0.00 1.89
416 417 5.007921 GGCTTTAAATTAAGGACGCCGATAA 59.992 40.000 0.00 0.00 0.00 1.75
417 418 4.512571 GGCTTTAAATTAAGGACGCCGATA 59.487 41.667 0.00 0.00 0.00 2.92
418 419 3.314357 GGCTTTAAATTAAGGACGCCGAT 59.686 43.478 0.00 0.00 0.00 4.18
419 420 2.679336 GGCTTTAAATTAAGGACGCCGA 59.321 45.455 0.00 0.00 0.00 5.54
420 421 3.060978 GGCTTTAAATTAAGGACGCCG 57.939 47.619 0.00 0.00 0.00 6.46
421 422 2.223409 CCGGCTTTAAATTAAGGACGCC 60.223 50.000 16.28 11.01 43.94 5.68
422 423 2.679336 TCCGGCTTTAAATTAAGGACGC 59.321 45.455 16.28 4.28 43.94 5.19
423 424 4.268767 GTCCGGCTTTAAATTAAGGACG 57.731 45.455 15.00 15.00 44.76 4.79
424 425 3.686241 ACGTCCGGCTTTAAATTAAGGAC 59.314 43.478 16.09 16.09 42.17 3.85
425 426 3.934579 GACGTCCGGCTTTAAATTAAGGA 59.065 43.478 3.51 0.00 0.00 3.36
426 427 3.937079 AGACGTCCGGCTTTAAATTAAGG 59.063 43.478 13.01 0.00 0.00 2.69
427 428 4.868734 AGAGACGTCCGGCTTTAAATTAAG 59.131 41.667 13.01 0.00 30.74 1.85
428 429 4.628333 CAGAGACGTCCGGCTTTAAATTAA 59.372 41.667 13.01 0.00 30.74 1.40
429 430 4.082081 TCAGAGACGTCCGGCTTTAAATTA 60.082 41.667 13.01 0.00 30.74 1.40
430 431 3.000727 CAGAGACGTCCGGCTTTAAATT 58.999 45.455 13.01 0.00 30.74 1.82
431 432 2.232941 TCAGAGACGTCCGGCTTTAAAT 59.767 45.455 13.01 0.00 30.74 1.40
432 433 1.614903 TCAGAGACGTCCGGCTTTAAA 59.385 47.619 13.01 0.00 30.74 1.52
433 434 1.068055 GTCAGAGACGTCCGGCTTTAA 60.068 52.381 13.01 0.00 30.74 1.52
434 435 0.524862 GTCAGAGACGTCCGGCTTTA 59.475 55.000 13.01 0.00 30.74 1.85
435 436 1.289380 GTCAGAGACGTCCGGCTTT 59.711 57.895 13.01 0.00 30.74 3.51
436 437 2.963371 GTCAGAGACGTCCGGCTT 59.037 61.111 13.01 0.00 30.74 4.35
468 469 1.942776 CCTCAAGCCCTCCCATTTTT 58.057 50.000 0.00 0.00 0.00 1.94
469 470 0.615827 GCCTCAAGCCCTCCCATTTT 60.616 55.000 0.00 0.00 34.35 1.82
470 471 1.000866 GCCTCAAGCCCTCCCATTT 59.999 57.895 0.00 0.00 34.35 2.32
471 472 2.685999 GCCTCAAGCCCTCCCATT 59.314 61.111 0.00 0.00 34.35 3.16
481 482 2.040544 AACAATCGGGCGCCTCAAG 61.041 57.895 28.56 15.44 0.00 3.02
499 500 3.994392 GACAAGGACGTCTAAAAGCATCA 59.006 43.478 16.46 0.00 32.92 3.07
662 664 6.270064 CGGCTAAATGTTAATGGGGTAAAAG 58.730 40.000 0.00 0.00 0.00 2.27
675 677 1.470051 AATTCGGCCGGCTAAATGTT 58.530 45.000 28.56 11.19 0.00 2.71
676 678 1.470051 AAATTCGGCCGGCTAAATGT 58.530 45.000 28.56 17.78 0.00 2.71
751 759 6.560983 CGCTTTCTTTCTTTTTCTGTTCATGC 60.561 38.462 0.00 0.00 0.00 4.06
752 760 6.074676 CCGCTTTCTTTCTTTTTCTGTTCATG 60.075 38.462 0.00 0.00 0.00 3.07
765 2174 0.472471 TGGGACACCGCTTTCTTTCT 59.528 50.000 0.00 0.00 40.75 2.52
1239 3132 2.761844 TCCGGGAAGAGGACGAGT 59.238 61.111 0.00 0.00 31.86 4.18
1245 3138 4.493747 GTCGCGTCCGGGAAGAGG 62.494 72.222 14.42 4.78 38.78 3.69
1464 3357 2.356433 TTGTTGCGGACGATGCGA 60.356 55.556 0.00 0.00 30.86 5.10
2157 4055 5.885230 TTGAGAAATGGCAGTCTACAATG 57.115 39.130 3.64 0.00 0.00 2.82
2159 4057 5.335897 GCAATTGAGAAATGGCAGTCTACAA 60.336 40.000 10.34 9.63 0.00 2.41
2183 4081 6.023435 CCAATCATGTCAGACAACGTAATTG 58.977 40.000 7.50 11.99 44.60 2.32
2264 4162 8.863049 GCAAAGTGTGTCAATTAATAAGGATTG 58.137 33.333 0.00 0.00 35.18 2.67
2315 4213 6.212187 CACATACTCCCTCTGATCCATATTGA 59.788 42.308 0.00 0.00 0.00 2.57
2316 4214 6.404708 CACATACTCCCTCTGATCCATATTG 58.595 44.000 0.00 0.00 0.00 1.90
2317 4215 5.046014 GCACATACTCCCTCTGATCCATATT 60.046 44.000 0.00 0.00 0.00 1.28
2318 4216 4.469227 GCACATACTCCCTCTGATCCATAT 59.531 45.833 0.00 0.00 0.00 1.78
2320 4218 2.636893 GCACATACTCCCTCTGATCCAT 59.363 50.000 0.00 0.00 0.00 3.41
2322 4220 2.036992 CAGCACATACTCCCTCTGATCC 59.963 54.545 0.00 0.00 0.00 3.36
2323 4221 2.697751 ACAGCACATACTCCCTCTGATC 59.302 50.000 0.00 0.00 0.00 2.92
2324 4222 2.756907 ACAGCACATACTCCCTCTGAT 58.243 47.619 0.00 0.00 0.00 2.90
2325 4223 2.238084 ACAGCACATACTCCCTCTGA 57.762 50.000 0.00 0.00 0.00 3.27
2326 4224 2.223595 CGTACAGCACATACTCCCTCTG 60.224 54.545 0.00 0.00 0.00 3.35
2327 4225 2.025155 CGTACAGCACATACTCCCTCT 58.975 52.381 0.00 0.00 0.00 3.69
2328 4226 2.022195 TCGTACAGCACATACTCCCTC 58.978 52.381 0.00 0.00 0.00 4.30
2329 4227 2.139323 TCGTACAGCACATACTCCCT 57.861 50.000 0.00 0.00 0.00 4.20
2330 4228 2.953466 TTCGTACAGCACATACTCCC 57.047 50.000 0.00 0.00 0.00 4.30
2331 4229 5.184340 AGTATTCGTACAGCACATACTCC 57.816 43.478 0.00 0.00 0.00 3.85
2332 4230 7.096558 GCTAAAGTATTCGTACAGCACATACTC 60.097 40.741 0.00 0.00 0.00 2.59
2333 4231 6.696148 GCTAAAGTATTCGTACAGCACATACT 59.304 38.462 0.00 0.00 0.00 2.12
2334 4232 6.474427 TGCTAAAGTATTCGTACAGCACATAC 59.526 38.462 0.00 0.00 32.94 2.39
2335 4233 6.566141 TGCTAAAGTATTCGTACAGCACATA 58.434 36.000 0.00 0.00 32.94 2.29
2336 4234 5.416083 TGCTAAAGTATTCGTACAGCACAT 58.584 37.500 0.00 0.00 32.94 3.21
2337 4235 4.811908 TGCTAAAGTATTCGTACAGCACA 58.188 39.130 0.00 0.00 32.94 4.57
2338 4236 4.267928 CCTGCTAAAGTATTCGTACAGCAC 59.732 45.833 0.00 0.00 34.16 4.40
2339 4237 4.081862 ACCTGCTAAAGTATTCGTACAGCA 60.082 41.667 0.00 0.00 36.25 4.41
2340 4238 4.430908 ACCTGCTAAAGTATTCGTACAGC 58.569 43.478 0.00 0.00 0.00 4.40
2341 4239 6.963049 AAACCTGCTAAAGTATTCGTACAG 57.037 37.500 0.00 0.00 0.00 2.74
2374 4272 0.037790 GGGAGACACAGACACAGCTC 60.038 60.000 0.00 0.00 0.00 4.09
2393 4291 1.384989 ATGTACTGGTCTCGGCCGAG 61.385 60.000 42.89 42.89 43.21 4.63
2395 4293 1.065928 GATGTACTGGTCTCGGCCG 59.934 63.158 22.12 22.12 0.00 6.13
2396 4294 1.442148 GGATGTACTGGTCTCGGCC 59.558 63.158 0.00 0.00 0.00 6.13
2397 4295 1.065928 CGGATGTACTGGTCTCGGC 59.934 63.158 0.00 0.00 0.00 5.54
2399 4297 1.064208 CAGACGGATGTACTGGTCTCG 59.936 57.143 0.00 0.00 0.00 4.04
2400 4298 2.093106 ACAGACGGATGTACTGGTCTC 58.907 52.381 0.00 0.00 36.17 3.36
2402 4300 3.314541 AAACAGACGGATGTACTGGTC 57.685 47.619 0.00 0.00 36.17 4.02
2403 4301 3.368116 GCTAAACAGACGGATGTACTGGT 60.368 47.826 0.00 0.00 36.17 4.00
2405 4303 3.612860 GTGCTAAACAGACGGATGTACTG 59.387 47.826 0.00 0.00 37.62 2.74
2406 4304 3.510360 AGTGCTAAACAGACGGATGTACT 59.490 43.478 0.00 0.00 31.70 2.73
2407 4305 3.846360 AGTGCTAAACAGACGGATGTAC 58.154 45.455 0.00 0.00 31.70 2.90
2415 4414 5.050023 GGAAACAAGAGAGTGCTAAACAGAC 60.050 44.000 0.00 0.00 0.00 3.51
2434 4433 8.742554 ATTCTTGTCGTTCAAATTATGGAAAC 57.257 30.769 0.00 0.00 35.48 2.78
2447 4446 7.065803 TCCTCCATTTCATAATTCTTGTCGTTC 59.934 37.037 0.00 0.00 0.00 3.95
2451 6400 8.286191 ACTTCCTCCATTTCATAATTCTTGTC 57.714 34.615 0.00 0.00 0.00 3.18
2505 6454 6.145338 AGTAACCTGTTACCAGATCATACG 57.855 41.667 14.80 0.00 44.79 3.06
2515 6464 5.704515 GGGAGAAAAGAAGTAACCTGTTACC 59.295 44.000 14.80 3.22 44.79 2.85
2563 6512 3.815809 TCGAATCACCTTTTGTTGGACT 58.184 40.909 0.00 0.00 0.00 3.85
2650 6599 9.686683 ATACACTTTTACTTGATAGCAGGAAAT 57.313 29.630 0.00 0.00 0.00 2.17
2659 6608 8.978472 AGCCAGTAGATACACTTTTACTTGATA 58.022 33.333 0.00 0.00 0.00 2.15
2741 6694 2.384828 TCTGCAGCCCGAAGAGTAATA 58.615 47.619 9.47 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.