Multiple sequence alignment - TraesCS2B01G248300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G248300 chr2B 100.000 3134 0 0 1 3134 254643265 254646398 0.000000e+00 5788.0
1 TraesCS2B01G248300 chr2B 85.246 122 16 2 642 761 688454797 688454676 1.180000e-24 124.0
2 TraesCS2B01G248300 chr2B 83.471 121 19 1 642 761 105846617 105846737 9.190000e-21 111.0
3 TraesCS2B01G248300 chr2D 95.068 1399 47 9 979 2361 197874185 197875577 0.000000e+00 2182.0
4 TraesCS2B01G248300 chr2D 89.575 518 25 6 2600 3089 197913709 197914225 5.700000e-177 630.0
5 TraesCS2B01G248300 chr2D 85.714 378 36 8 231 597 197873786 197874156 1.760000e-102 383.0
6 TraesCS2B01G248300 chr2A 94.789 1324 61 6 979 2300 214424036 214425353 0.000000e+00 2056.0
7 TraesCS2B01G248300 chr2A 88.277 563 39 13 2586 3134 214426552 214427101 0.000000e+00 649.0
8 TraesCS2B01G248300 chr2A 88.710 248 21 4 340 587 214423770 214424010 2.360000e-76 296.0
9 TraesCS2B01G248300 chr2A 88.710 124 7 3 2239 2361 214425350 214425467 9.060000e-31 145.0
10 TraesCS2B01G248300 chr1B 86.058 208 24 5 777 981 664778902 664778697 5.260000e-53 219.0
11 TraesCS2B01G248300 chr5B 88.430 121 13 1 642 761 681821167 681821047 9.060000e-31 145.0
12 TraesCS2B01G248300 chr5B 92.308 52 3 1 2366 2416 511409402 511409351 4.340000e-09 73.1
13 TraesCS2B01G248300 chr5B 81.333 75 11 3 2375 2447 411820338 411820411 1.210000e-04 58.4
14 TraesCS2B01G248300 chr4D 83.065 124 19 1 640 761 36351754 36351631 9.190000e-21 111.0
15 TraesCS2B01G248300 chr1A 83.471 121 19 1 640 759 28971693 28971813 9.190000e-21 111.0
16 TraesCS2B01G248300 chr7A 82.787 122 19 1 640 759 712364647 712364526 1.190000e-19 108.0
17 TraesCS2B01G248300 chr3D 82.787 122 19 2 642 761 177039270 177039391 1.190000e-19 108.0
18 TraesCS2B01G248300 chr3A 82.787 122 19 2 639 758 649812673 649812794 1.190000e-19 108.0
19 TraesCS2B01G248300 chr3A 74.497 149 31 6 2372 2514 24686407 24686554 1.210000e-04 58.4
20 TraesCS2B01G248300 chr4A 82.500 120 19 1 642 759 14265547 14265428 1.540000e-18 104.0
21 TraesCS2B01G248300 chr4A 87.755 49 4 1 2375 2421 692979240 692979288 4.370000e-04 56.5
22 TraesCS2B01G248300 chr5D 94.737 38 2 0 2366 2403 291164195 291164232 3.380000e-05 60.2
23 TraesCS2B01G248300 chr4B 94.737 38 1 1 2370 2406 145390357 145390394 1.210000e-04 58.4
24 TraesCS2B01G248300 chrUn 92.308 39 3 0 2368 2406 51348969 51348931 4.370000e-04 56.5
25 TraesCS2B01G248300 chrUn 92.308 39 3 0 2368 2406 51358184 51358146 4.370000e-04 56.5
26 TraesCS2B01G248300 chr3B 89.362 47 1 2 2375 2417 682880588 682880634 4.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G248300 chr2B 254643265 254646398 3133 False 5788.0 5788 100.0000 1 3134 1 chr2B.!!$F2 3133
1 TraesCS2B01G248300 chr2D 197873786 197875577 1791 False 1282.5 2182 90.3910 231 2361 2 chr2D.!!$F2 2130
2 TraesCS2B01G248300 chr2D 197913709 197914225 516 False 630.0 630 89.5750 2600 3089 1 chr2D.!!$F1 489
3 TraesCS2B01G248300 chr2A 214423770 214427101 3331 False 786.5 2056 90.1215 340 3134 4 chr2A.!!$F1 2794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 830 0.029834 CACGGGCAGCATATTTGAGC 59.97 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 2572 0.024111 GTCCGCCGACGTTAATTTCG 59.976 55.0 0.0 2.51 37.7 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.973843 ACATATGGATGAACATTTTGATCCG 58.026 36.000 7.80 0.00 37.75 4.18
30 31 6.547141 ACATATGGATGAACATTTTGATCCGT 59.453 34.615 9.38 9.38 37.75 4.69
31 32 7.719193 ACATATGGATGAACATTTTGATCCGTA 59.281 33.333 12.58 12.58 39.62 4.02
32 33 8.733458 CATATGGATGAACATTTTGATCCGTAT 58.267 33.333 15.26 15.26 43.48 3.06
33 34 6.375945 TGGATGAACATTTTGATCCGTATG 57.624 37.500 5.73 0.00 37.75 2.39
34 35 5.885352 TGGATGAACATTTTGATCCGTATGT 59.115 36.000 5.73 0.00 37.75 2.29
35 36 7.051000 TGGATGAACATTTTGATCCGTATGTA 58.949 34.615 5.73 0.00 37.75 2.29
36 37 7.226523 TGGATGAACATTTTGATCCGTATGTAG 59.773 37.037 5.73 0.00 37.75 2.74
37 38 7.226720 GGATGAACATTTTGATCCGTATGTAGT 59.773 37.037 0.00 0.00 31.40 2.73
38 39 7.534085 TGAACATTTTGATCCGTATGTAGTC 57.466 36.000 4.68 2.02 31.40 2.59
39 40 7.327975 TGAACATTTTGATCCGTATGTAGTCT 58.672 34.615 4.68 0.00 31.40 3.24
40 41 8.471609 TGAACATTTTGATCCGTATGTAGTCTA 58.528 33.333 4.68 0.00 31.40 2.59
41 42 9.477484 GAACATTTTGATCCGTATGTAGTCTAT 57.523 33.333 4.68 0.00 31.40 1.98
47 48 9.570468 TTTGATCCGTATGTAGTCTATAGAACT 57.430 33.333 3.40 7.00 0.00 3.01
49 50 9.650539 TGATCCGTATGTAGTCTATAGAACTAC 57.349 37.037 22.54 22.54 37.45 2.73
50 51 9.650539 GATCCGTATGTAGTCTATAGAACTACA 57.349 37.037 28.17 28.17 46.66 2.74
180 181 9.671279 TTTGCTTCATATGTATCTCTGAAAAGA 57.329 29.630 1.90 0.00 0.00 2.52
181 182 8.654230 TGCTTCATATGTATCTCTGAAAAGAC 57.346 34.615 1.90 0.00 0.00 3.01
182 183 8.481314 TGCTTCATATGTATCTCTGAAAAGACT 58.519 33.333 1.90 0.00 0.00 3.24
183 184 9.323985 GCTTCATATGTATCTCTGAAAAGACTT 57.676 33.333 1.90 0.00 0.00 3.01
191 192 9.996554 TGTATCTCTGAAAAGACTTACATTGAA 57.003 29.630 0.00 0.00 0.00 2.69
195 196 9.784531 TCTCTGAAAAGACTTACATTGAAATCT 57.215 29.630 0.00 0.00 0.00 2.40
197 198 9.784531 TCTGAAAAGACTTACATTGAAATCTCT 57.215 29.630 0.00 0.00 0.00 3.10
198 199 9.823098 CTGAAAAGACTTACATTGAAATCTCTG 57.177 33.333 0.00 0.00 0.00 3.35
199 200 9.559732 TGAAAAGACTTACATTGAAATCTCTGA 57.440 29.630 0.00 0.00 0.00 3.27
201 202 9.784531 AAAAGACTTACATTGAAATCTCTGAGA 57.215 29.630 10.23 10.23 0.00 3.27
202 203 9.784531 AAAGACTTACATTGAAATCTCTGAGAA 57.215 29.630 12.00 0.00 0.00 2.87
203 204 9.956640 AAGACTTACATTGAAATCTCTGAGAAT 57.043 29.630 12.00 0.00 0.00 2.40
234 235 3.438131 AGGAATGGAGGGATTGTCCTA 57.562 47.619 0.00 0.00 37.25 2.94
239 240 5.310857 GGAATGGAGGGATTGTCCTATAACT 59.689 44.000 0.00 0.00 37.25 2.24
240 241 6.441088 AATGGAGGGATTGTCCTATAACTC 57.559 41.667 0.00 0.00 37.25 3.01
244 245 6.782988 TGGAGGGATTGTCCTATAACTCTAAG 59.217 42.308 0.00 0.00 37.25 2.18
245 246 6.211785 GGAGGGATTGTCCTATAACTCTAAGG 59.788 46.154 0.00 0.00 37.25 2.69
263 264 6.173339 TCTAAGGTGAATCAAAGGACATCAC 58.827 40.000 0.00 0.00 40.16 3.06
264 265 4.647564 AGGTGAATCAAAGGACATCACT 57.352 40.909 0.00 0.00 40.47 3.41
384 389 2.309136 AGGCCCAGCAATAAACAAGT 57.691 45.000 0.00 0.00 0.00 3.16
409 414 6.456447 TTGAAACTTCGTATGAACTTACGG 57.544 37.500 16.10 7.35 43.89 4.02
410 415 4.386652 TGAAACTTCGTATGAACTTACGGC 59.613 41.667 16.10 0.00 43.89 5.68
411 416 3.581024 ACTTCGTATGAACTTACGGCA 57.419 42.857 16.10 6.64 43.89 5.69
422 427 6.870971 TGAACTTACGGCAAATTTAAGAGT 57.129 33.333 4.96 0.30 0.00 3.24
428 433 4.866921 ACGGCAAATTTAAGAGTGGTTTC 58.133 39.130 0.00 0.00 0.00 2.78
438 443 7.506328 TTTAAGAGTGGTTTCTTTAAGAGCC 57.494 36.000 9.61 9.61 38.35 4.70
460 466 3.365364 CGAAGGAATTTCACAGAAGTGCC 60.365 47.826 0.00 0.00 45.49 5.01
468 474 0.033504 CACAGAAGTGCCGTGTAGGT 59.966 55.000 0.00 0.00 43.70 3.08
479 485 2.676342 GCCGTGTAGGTTACTGGAATTG 59.324 50.000 0.00 0.00 43.70 2.32
530 536 0.595095 CCAGTGCACTTCCTTTCTGC 59.405 55.000 18.94 0.00 0.00 4.26
531 537 0.236711 CAGTGCACTTCCTTTCTGCG 59.763 55.000 18.94 0.00 33.35 5.18
532 538 0.106708 AGTGCACTTCCTTTCTGCGA 59.893 50.000 15.25 0.00 33.35 5.10
533 539 0.514691 GTGCACTTCCTTTCTGCGAG 59.485 55.000 10.32 0.00 33.35 5.03
568 583 0.689623 ACTTCAGCTCACCTCCCTTG 59.310 55.000 0.00 0.00 0.00 3.61
578 593 2.775384 TCACCTCCCTTGTACAAACTGT 59.225 45.455 10.03 0.44 0.00 3.55
600 615 0.647410 CTACGCGCCTGACATCAAAG 59.353 55.000 5.73 0.00 0.00 2.77
601 616 0.037697 TACGCGCCTGACATCAAAGT 60.038 50.000 5.73 0.00 0.00 2.66
605 620 1.063174 GCGCCTGACATCAAAGTCATC 59.937 52.381 0.00 0.00 46.51 2.92
607 622 2.743664 CGCCTGACATCAAAGTCATCAA 59.256 45.455 0.00 0.00 46.51 2.57
609 624 3.503363 GCCTGACATCAAAGTCATCAACA 59.497 43.478 0.00 0.00 46.51 3.33
610 625 4.379186 GCCTGACATCAAAGTCATCAACAG 60.379 45.833 0.00 0.00 46.51 3.16
611 626 4.758674 CCTGACATCAAAGTCATCAACAGT 59.241 41.667 0.00 0.00 46.51 3.55
612 627 5.106791 CCTGACATCAAAGTCATCAACAGTC 60.107 44.000 0.00 0.00 46.51 3.51
613 628 5.614308 TGACATCAAAGTCATCAACAGTCT 58.386 37.500 0.00 0.00 43.18 3.24
614 629 5.698089 TGACATCAAAGTCATCAACAGTCTC 59.302 40.000 0.00 0.00 43.18 3.36
615 630 4.999950 ACATCAAAGTCATCAACAGTCTCC 59.000 41.667 0.00 0.00 0.00 3.71
626 641 5.304686 TCAACAGTCTCCCAACAAATACT 57.695 39.130 0.00 0.00 0.00 2.12
627 642 5.305585 TCAACAGTCTCCCAACAAATACTC 58.694 41.667 0.00 0.00 0.00 2.59
628 643 4.287766 ACAGTCTCCCAACAAATACTCC 57.712 45.455 0.00 0.00 0.00 3.85
629 644 3.910627 ACAGTCTCCCAACAAATACTCCT 59.089 43.478 0.00 0.00 0.00 3.69
630 645 5.091552 ACAGTCTCCCAACAAATACTCCTA 58.908 41.667 0.00 0.00 0.00 2.94
631 646 5.046520 ACAGTCTCCCAACAAATACTCCTAC 60.047 44.000 0.00 0.00 0.00 3.18
632 647 5.046591 CAGTCTCCCAACAAATACTCCTACA 60.047 44.000 0.00 0.00 0.00 2.74
634 649 5.817816 GTCTCCCAACAAATACTCCTACATG 59.182 44.000 0.00 0.00 0.00 3.21
635 650 5.724370 TCTCCCAACAAATACTCCTACATGA 59.276 40.000 0.00 0.00 0.00 3.07
636 651 5.741011 TCCCAACAAATACTCCTACATGAC 58.259 41.667 0.00 0.00 0.00 3.06
639 654 5.175859 CAACAAATACTCCTACATGACGGT 58.824 41.667 0.00 0.00 0.00 4.83
640 655 5.416271 ACAAATACTCCTACATGACGGTT 57.584 39.130 0.00 0.00 0.00 4.44
641 656 6.534475 ACAAATACTCCTACATGACGGTTA 57.466 37.500 0.00 0.00 0.00 2.85
642 657 6.570692 ACAAATACTCCTACATGACGGTTAG 58.429 40.000 0.00 0.00 0.00 2.34
643 658 6.379133 ACAAATACTCCTACATGACGGTTAGA 59.621 38.462 0.00 0.00 0.00 2.10
644 659 6.636562 AATACTCCTACATGACGGTTAGAG 57.363 41.667 0.00 0.00 0.00 2.43
645 660 2.688958 ACTCCTACATGACGGTTAGAGC 59.311 50.000 0.00 0.00 0.00 4.09
646 661 2.688446 CTCCTACATGACGGTTAGAGCA 59.312 50.000 0.00 0.00 0.00 4.26
647 662 3.296854 TCCTACATGACGGTTAGAGCAT 58.703 45.455 0.00 0.00 0.00 3.79
648 663 3.318275 TCCTACATGACGGTTAGAGCATC 59.682 47.826 0.00 0.00 0.00 3.91
663 678 3.968649 GAGCATCTTCAACAAAAGCACA 58.031 40.909 0.00 0.00 0.00 4.57
664 679 4.362279 GAGCATCTTCAACAAAAGCACAA 58.638 39.130 0.00 0.00 0.00 3.33
665 680 4.757594 AGCATCTTCAACAAAAGCACAAA 58.242 34.783 0.00 0.00 0.00 2.83
666 681 5.177326 AGCATCTTCAACAAAAGCACAAAA 58.823 33.333 0.00 0.00 0.00 2.44
667 682 5.642919 AGCATCTTCAACAAAAGCACAAAAA 59.357 32.000 0.00 0.00 0.00 1.94
668 683 5.961263 GCATCTTCAACAAAAGCACAAAAAG 59.039 36.000 0.00 0.00 0.00 2.27
669 684 6.183360 GCATCTTCAACAAAAGCACAAAAAGA 60.183 34.615 0.00 0.00 0.00 2.52
670 685 6.949578 TCTTCAACAAAAGCACAAAAAGAG 57.050 33.333 0.00 0.00 0.00 2.85
671 686 5.348451 TCTTCAACAAAAGCACAAAAAGAGC 59.652 36.000 0.00 0.00 0.00 4.09
672 687 4.819769 TCAACAAAAGCACAAAAAGAGCT 58.180 34.783 0.00 0.00 46.59 4.09
673 688 4.864247 TCAACAAAAGCACAAAAAGAGCTC 59.136 37.500 5.27 5.27 43.70 4.09
674 689 3.785486 ACAAAAGCACAAAAAGAGCTCC 58.215 40.909 10.93 0.00 43.70 4.70
675 690 2.781945 AAAGCACAAAAAGAGCTCCG 57.218 45.000 10.93 0.00 43.70 4.63
676 691 0.312102 AAGCACAAAAAGAGCTCCGC 59.688 50.000 10.93 2.13 43.70 5.54
677 692 1.441016 GCACAAAAAGAGCTCCGCG 60.441 57.895 10.93 0.00 0.00 6.46
678 693 1.441016 CACAAAAAGAGCTCCGCGC 60.441 57.895 10.93 0.00 39.57 6.86
679 694 1.891919 ACAAAAAGAGCTCCGCGCA 60.892 52.632 10.93 0.00 42.61 6.09
680 695 1.441016 CAAAAAGAGCTCCGCGCAC 60.441 57.895 10.93 0.00 42.61 5.34
681 696 1.598130 AAAAAGAGCTCCGCGCACT 60.598 52.632 10.93 0.00 41.53 4.40
682 697 0.320421 AAAAAGAGCTCCGCGCACTA 60.320 50.000 10.93 0.00 38.68 2.74
683 698 0.320421 AAAAGAGCTCCGCGCACTAA 60.320 50.000 10.93 0.00 38.68 2.24
684 699 0.320421 AAAGAGCTCCGCGCACTAAA 60.320 50.000 10.93 0.00 38.68 1.85
685 700 0.320421 AAGAGCTCCGCGCACTAAAA 60.320 50.000 10.93 0.00 38.68 1.52
686 701 0.320421 AGAGCTCCGCGCACTAAAAA 60.320 50.000 10.93 0.00 42.61 1.94
687 702 0.727398 GAGCTCCGCGCACTAAAAAT 59.273 50.000 8.75 0.00 42.61 1.82
688 703 1.130561 GAGCTCCGCGCACTAAAAATT 59.869 47.619 8.75 0.00 42.61 1.82
689 704 1.539827 AGCTCCGCGCACTAAAAATTT 59.460 42.857 8.75 0.00 42.61 1.82
690 705 2.745281 AGCTCCGCGCACTAAAAATTTA 59.255 40.909 8.75 0.00 42.61 1.40
691 706 3.377172 AGCTCCGCGCACTAAAAATTTAT 59.623 39.130 8.75 0.00 42.61 1.40
692 707 4.102649 GCTCCGCGCACTAAAAATTTATT 58.897 39.130 8.75 0.00 38.92 1.40
693 708 4.561213 GCTCCGCGCACTAAAAATTTATTT 59.439 37.500 8.75 0.00 38.92 1.40
694 709 5.061684 GCTCCGCGCACTAAAAATTTATTTT 59.938 36.000 8.75 0.00 38.92 1.82
695 710 6.400621 GCTCCGCGCACTAAAAATTTATTTTT 60.401 34.615 8.75 15.23 43.63 1.94
712 727 1.886886 TTTTAACACCGGACAGCTCC 58.113 50.000 9.46 0.00 0.00 4.70
713 728 0.759959 TTTAACACCGGACAGCTCCA 59.240 50.000 9.46 0.00 36.12 3.86
714 729 0.320374 TTAACACCGGACAGCTCCAG 59.680 55.000 9.46 0.00 36.12 3.86
715 730 2.167398 TAACACCGGACAGCTCCAGC 62.167 60.000 9.46 0.00 36.12 4.85
716 731 4.007644 CACCGGACAGCTCCAGCA 62.008 66.667 9.46 0.00 45.16 4.41
717 732 3.699894 ACCGGACAGCTCCAGCAG 61.700 66.667 9.46 0.00 45.16 4.24
718 733 3.385384 CCGGACAGCTCCAGCAGA 61.385 66.667 0.00 0.00 45.16 4.26
719 734 2.659016 CGGACAGCTCCAGCAGAA 59.341 61.111 0.48 0.00 45.16 3.02
720 735 1.447489 CGGACAGCTCCAGCAGAAG 60.447 63.158 0.48 0.00 45.16 2.85
721 736 1.676384 GGACAGCTCCAGCAGAAGT 59.324 57.895 0.48 0.00 45.16 3.01
722 737 0.036022 GGACAGCTCCAGCAGAAGTT 59.964 55.000 0.48 0.00 45.16 2.66
723 738 1.155042 GACAGCTCCAGCAGAAGTTG 58.845 55.000 0.48 0.00 45.16 3.16
724 739 0.471617 ACAGCTCCAGCAGAAGTTGT 59.528 50.000 0.48 0.00 45.16 3.32
725 740 1.133976 ACAGCTCCAGCAGAAGTTGTT 60.134 47.619 0.48 0.00 45.16 2.83
726 741 1.266175 CAGCTCCAGCAGAAGTTGTTG 59.734 52.381 0.48 0.00 45.16 3.33
727 742 0.039708 GCTCCAGCAGAAGTTGTTGC 60.040 55.000 0.00 1.58 41.59 4.17
728 743 0.236711 CTCCAGCAGAAGTTGTTGCG 59.763 55.000 3.93 0.00 44.80 4.85
729 744 1.370900 CCAGCAGAAGTTGTTGCGC 60.371 57.895 0.00 0.00 44.80 6.09
730 745 1.650912 CAGCAGAAGTTGTTGCGCT 59.349 52.632 9.73 0.00 44.80 5.92
731 746 0.867746 CAGCAGAAGTTGTTGCGCTA 59.132 50.000 9.73 0.00 44.80 4.26
732 747 1.264020 CAGCAGAAGTTGTTGCGCTAA 59.736 47.619 9.73 0.00 44.80 3.09
733 748 1.946768 AGCAGAAGTTGTTGCGCTAAA 59.053 42.857 9.73 0.00 44.80 1.85
734 749 2.357637 AGCAGAAGTTGTTGCGCTAAAA 59.642 40.909 9.73 0.00 44.80 1.52
735 750 2.721090 GCAGAAGTTGTTGCGCTAAAAG 59.279 45.455 9.73 0.00 0.00 2.27
736 751 2.721090 CAGAAGTTGTTGCGCTAAAAGC 59.279 45.455 9.73 0.00 38.02 3.51
737 752 2.618709 AGAAGTTGTTGCGCTAAAAGCT 59.381 40.909 9.73 0.99 39.60 3.74
738 753 3.066760 AGAAGTTGTTGCGCTAAAAGCTT 59.933 39.130 9.73 9.99 39.60 3.74
739 754 3.436700 AGTTGTTGCGCTAAAAGCTTT 57.563 38.095 9.73 5.69 39.60 3.51
740 755 3.780902 AGTTGTTGCGCTAAAAGCTTTT 58.219 36.364 26.50 26.50 39.60 2.27
741 756 3.551485 AGTTGTTGCGCTAAAAGCTTTTG 59.449 39.130 30.21 21.05 39.60 2.44
742 757 2.468831 TGTTGCGCTAAAAGCTTTTGG 58.531 42.857 30.21 28.04 39.60 3.28
743 758 1.792367 GTTGCGCTAAAAGCTTTTGGG 59.208 47.619 30.21 25.54 39.60 4.12
744 759 0.319469 TGCGCTAAAAGCTTTTGGGC 60.319 50.000 32.12 32.12 39.60 5.36
745 760 1.344226 GCGCTAAAAGCTTTTGGGCG 61.344 55.000 38.76 38.76 46.09 6.13
746 761 1.344226 CGCTAAAAGCTTTTGGGCGC 61.344 55.000 36.17 27.94 42.00 6.53
747 762 1.344226 GCTAAAAGCTTTTGGGCGCG 61.344 55.000 30.21 0.00 38.45 6.86
748 763 1.344226 CTAAAAGCTTTTGGGCGCGC 61.344 55.000 30.21 25.94 37.29 6.86
749 764 4.999939 AAAGCTTTTGGGCGCGCG 63.000 61.111 28.44 28.44 37.29 6.86
753 768 4.320928 CTTTTGGGCGCGCGTTGA 62.321 61.111 32.35 12.33 0.00 3.18
754 769 3.815569 CTTTTGGGCGCGCGTTGAA 62.816 57.895 32.35 17.77 0.00 2.69
755 770 3.411418 TTTTGGGCGCGCGTTGAAA 62.411 52.632 32.35 22.31 0.00 2.69
756 771 2.884087 TTTTGGGCGCGCGTTGAAAA 62.884 50.000 32.35 26.15 0.00 2.29
757 772 2.884087 TTTGGGCGCGCGTTGAAAAA 62.884 50.000 32.35 20.29 0.00 1.94
758 773 3.391631 GGGCGCGCGTTGAAAAAC 61.392 61.111 32.35 11.65 0.00 2.43
769 784 3.747193 CGTTGAAAAACGCATGATAGCT 58.253 40.909 0.00 0.00 39.43 3.32
770 785 4.158384 CGTTGAAAAACGCATGATAGCTT 58.842 39.130 0.00 0.00 39.43 3.74
771 786 4.260656 CGTTGAAAAACGCATGATAGCTTC 59.739 41.667 0.00 0.00 39.43 3.86
772 787 5.393962 GTTGAAAAACGCATGATAGCTTCT 58.606 37.500 0.00 0.00 0.00 2.85
773 788 4.973396 TGAAAAACGCATGATAGCTTCTG 58.027 39.130 0.00 0.00 0.00 3.02
774 789 4.142622 TGAAAAACGCATGATAGCTTCTGG 60.143 41.667 0.00 0.00 0.00 3.86
775 790 1.959042 AACGCATGATAGCTTCTGGG 58.041 50.000 0.00 0.00 0.00 4.45
776 791 0.533755 ACGCATGATAGCTTCTGGGC 60.534 55.000 0.00 0.00 0.00 5.36
777 792 1.563435 CGCATGATAGCTTCTGGGCG 61.563 60.000 0.00 0.00 37.29 6.13
778 793 1.849976 GCATGATAGCTTCTGGGCGC 61.850 60.000 0.00 0.00 37.29 6.53
779 794 1.301244 ATGATAGCTTCTGGGCGCG 60.301 57.895 0.00 0.00 37.29 6.86
780 795 3.341835 GATAGCTTCTGGGCGCGC 61.342 66.667 25.94 25.94 37.29 6.86
799 814 2.139336 CGTTGGAAAACGCTATCACG 57.861 50.000 0.00 0.00 39.43 4.35
800 815 1.201877 CGTTGGAAAACGCTATCACGG 60.202 52.381 0.00 0.00 39.43 4.94
801 816 1.129811 GTTGGAAAACGCTATCACGGG 59.870 52.381 0.00 0.00 37.37 5.28
802 817 1.022451 TGGAAAACGCTATCACGGGC 61.022 55.000 0.00 0.00 37.37 6.13
803 818 1.022451 GGAAAACGCTATCACGGGCA 61.022 55.000 0.00 0.00 37.37 5.36
804 819 0.373716 GAAAACGCTATCACGGGCAG 59.626 55.000 0.00 0.00 37.37 4.85
805 820 1.644786 AAAACGCTATCACGGGCAGC 61.645 55.000 1.32 1.32 37.37 5.25
806 821 2.796483 AAACGCTATCACGGGCAGCA 62.796 55.000 11.04 0.00 37.37 4.41
807 822 2.280389 CGCTATCACGGGCAGCAT 60.280 61.111 11.04 0.00 34.94 3.79
808 823 1.006220 CGCTATCACGGGCAGCATA 60.006 57.895 11.04 0.00 34.94 3.14
809 824 0.390340 CGCTATCACGGGCAGCATAT 60.390 55.000 11.04 0.00 34.94 1.78
810 825 1.813513 GCTATCACGGGCAGCATATT 58.186 50.000 6.25 0.00 35.35 1.28
811 826 2.154462 GCTATCACGGGCAGCATATTT 58.846 47.619 6.25 0.00 35.35 1.40
812 827 2.095567 GCTATCACGGGCAGCATATTTG 60.096 50.000 6.25 0.00 35.35 2.32
813 828 2.346766 ATCACGGGCAGCATATTTGA 57.653 45.000 0.00 0.00 0.00 2.69
814 829 1.667236 TCACGGGCAGCATATTTGAG 58.333 50.000 0.00 0.00 0.00 3.02
815 830 0.029834 CACGGGCAGCATATTTGAGC 59.970 55.000 0.00 0.00 0.00 4.26
816 831 1.280746 CGGGCAGCATATTTGAGCG 59.719 57.895 0.00 0.00 35.48 5.03
817 832 1.008079 GGGCAGCATATTTGAGCGC 60.008 57.895 0.00 0.00 35.48 5.92
818 833 1.008079 GGCAGCATATTTGAGCGCC 60.008 57.895 2.29 0.00 40.86 6.53
819 834 1.369689 GCAGCATATTTGAGCGCCG 60.370 57.895 2.29 0.00 35.48 6.46
820 835 1.280746 CAGCATATTTGAGCGCCGG 59.719 57.895 2.29 0.00 35.48 6.13
821 836 1.153168 AGCATATTTGAGCGCCGGT 60.153 52.632 2.29 0.00 35.48 5.28
822 837 0.748005 AGCATATTTGAGCGCCGGTT 60.748 50.000 2.29 0.00 35.48 4.44
823 838 0.592247 GCATATTTGAGCGCCGGTTG 60.592 55.000 2.29 0.00 0.00 3.77
824 839 0.592247 CATATTTGAGCGCCGGTTGC 60.592 55.000 2.29 12.25 0.00 4.17
840 855 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
841 856 3.046460 GCGCGCGCTTCACAATTTG 62.046 57.895 44.38 10.35 38.26 2.32
842 857 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
843 858 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
844 859 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
845 860 1.768603 GCGCTTCACAATTTGCACG 59.231 52.632 0.00 0.00 0.00 5.34
846 861 1.608093 GCGCTTCACAATTTGCACGG 61.608 55.000 0.00 0.00 0.00 4.94
847 862 0.317770 CGCTTCACAATTTGCACGGT 60.318 50.000 0.00 0.00 0.00 4.83
848 863 1.408422 GCTTCACAATTTGCACGGTC 58.592 50.000 0.00 0.00 0.00 4.79
849 864 1.001378 GCTTCACAATTTGCACGGTCT 60.001 47.619 0.00 0.00 0.00 3.85
850 865 2.653890 CTTCACAATTTGCACGGTCTG 58.346 47.619 0.00 0.00 0.00 3.51
860 875 2.596263 GCACGGTCTGCTTTTTAGAC 57.404 50.000 0.00 0.00 43.33 2.59
861 876 1.136336 GCACGGTCTGCTTTTTAGACG 60.136 52.381 0.00 0.00 44.24 4.18
862 877 1.136336 CACGGTCTGCTTTTTAGACGC 60.136 52.381 0.00 0.00 44.24 5.19
863 878 0.093026 CGGTCTGCTTTTTAGACGCG 59.907 55.000 3.53 3.53 44.24 6.01
864 879 1.145803 GGTCTGCTTTTTAGACGCGT 58.854 50.000 13.85 13.85 44.24 6.01
865 880 1.136336 GGTCTGCTTTTTAGACGCGTG 60.136 52.381 20.70 0.00 44.24 5.34
866 881 1.525619 GTCTGCTTTTTAGACGCGTGT 59.474 47.619 20.70 17.60 35.68 4.49
867 882 2.033151 GTCTGCTTTTTAGACGCGTGTT 60.033 45.455 20.70 7.39 35.68 3.32
868 883 2.610374 TCTGCTTTTTAGACGCGTGTTT 59.390 40.909 20.70 4.32 0.00 2.83
869 884 3.064271 TCTGCTTTTTAGACGCGTGTTTT 59.936 39.130 20.70 1.31 0.00 2.43
870 885 3.760537 TGCTTTTTAGACGCGTGTTTTT 58.239 36.364 20.70 0.00 0.00 1.94
871 886 3.544285 TGCTTTTTAGACGCGTGTTTTTG 59.456 39.130 20.70 4.05 0.00 2.44
872 887 3.787105 GCTTTTTAGACGCGTGTTTTTGA 59.213 39.130 20.70 0.00 0.00 2.69
873 888 4.086277 GCTTTTTAGACGCGTGTTTTTGAG 60.086 41.667 20.70 9.19 0.00 3.02
874 889 2.656192 TTAGACGCGTGTTTTTGAGC 57.344 45.000 20.70 0.00 0.00 4.26
877 892 3.091022 CGCGTGTTTTTGAGCGCC 61.091 61.111 2.29 0.00 45.94 6.53
878 893 2.331451 GCGTGTTTTTGAGCGCCT 59.669 55.556 2.29 0.00 43.52 5.52
879 894 2.010817 GCGTGTTTTTGAGCGCCTG 61.011 57.895 2.29 0.00 43.52 4.85
880 895 2.010817 CGTGTTTTTGAGCGCCTGC 61.011 57.895 2.29 0.00 43.24 4.85
900 915 4.585619 GCTAAAGCAAAGTTAGTCTCGG 57.414 45.455 0.00 0.00 41.59 4.63
901 916 3.181519 GCTAAAGCAAAGTTAGTCTCGGC 60.182 47.826 0.00 0.00 41.59 5.54
902 917 1.429463 AAGCAAAGTTAGTCTCGGCG 58.571 50.000 0.00 0.00 32.70 6.46
903 918 1.014564 AGCAAAGTTAGTCTCGGCGC 61.015 55.000 0.00 0.00 32.70 6.53
904 919 1.289109 GCAAAGTTAGTCTCGGCGCA 61.289 55.000 10.83 0.00 0.00 6.09
905 920 1.359848 CAAAGTTAGTCTCGGCGCAT 58.640 50.000 10.83 0.00 0.00 4.73
906 921 1.732259 CAAAGTTAGTCTCGGCGCATT 59.268 47.619 10.83 0.00 0.00 3.56
907 922 2.927477 CAAAGTTAGTCTCGGCGCATTA 59.073 45.455 10.83 0.00 0.00 1.90
908 923 2.953466 AGTTAGTCTCGGCGCATTAA 57.047 45.000 10.83 0.00 0.00 1.40
909 924 3.241067 AGTTAGTCTCGGCGCATTAAA 57.759 42.857 10.83 0.00 0.00 1.52
910 925 3.592059 AGTTAGTCTCGGCGCATTAAAA 58.408 40.909 10.83 0.00 0.00 1.52
911 926 3.998341 AGTTAGTCTCGGCGCATTAAAAA 59.002 39.130 10.83 0.00 0.00 1.94
912 927 2.894307 AGTCTCGGCGCATTAAAAAC 57.106 45.000 10.83 0.00 0.00 2.43
913 928 1.127951 AGTCTCGGCGCATTAAAAACG 59.872 47.619 10.83 0.00 0.00 3.60
922 937 4.060288 CGCATTAAAAACGCTACAGTGA 57.940 40.909 0.00 0.00 0.00 3.41
923 938 3.838550 CGCATTAAAAACGCTACAGTGAC 59.161 43.478 0.00 0.00 0.00 3.67
924 939 3.838550 GCATTAAAAACGCTACAGTGACG 59.161 43.478 0.00 0.00 0.00 4.35
925 940 3.508648 TTAAAAACGCTACAGTGACGC 57.491 42.857 0.00 0.00 0.00 5.19
926 941 1.292061 AAAAACGCTACAGTGACGCA 58.708 45.000 0.00 0.00 0.00 5.24
927 942 0.580104 AAAACGCTACAGTGACGCAC 59.420 50.000 0.00 2.28 34.10 5.34
928 943 0.249322 AAACGCTACAGTGACGCACT 60.249 50.000 0.00 6.67 46.51 4.40
929 944 0.594602 AACGCTACAGTGACGCACTA 59.405 50.000 11.31 0.00 43.43 2.74
930 945 0.809385 ACGCTACAGTGACGCACTAT 59.191 50.000 11.31 4.42 43.43 2.12
931 946 2.011947 ACGCTACAGTGACGCACTATA 58.988 47.619 11.31 5.28 43.43 1.31
932 947 2.421073 ACGCTACAGTGACGCACTATAA 59.579 45.455 11.31 1.67 43.43 0.98
933 948 3.066342 ACGCTACAGTGACGCACTATAAT 59.934 43.478 11.31 2.71 43.43 1.28
934 949 3.422217 CGCTACAGTGACGCACTATAATG 59.578 47.826 11.31 4.12 43.43 1.90
935 950 4.360563 GCTACAGTGACGCACTATAATGT 58.639 43.478 11.31 8.80 43.43 2.71
936 951 4.804139 GCTACAGTGACGCACTATAATGTT 59.196 41.667 11.31 0.00 43.43 2.71
937 952 5.051641 GCTACAGTGACGCACTATAATGTTC 60.052 44.000 11.31 1.28 43.43 3.18
938 953 4.816392 ACAGTGACGCACTATAATGTTCA 58.184 39.130 11.31 0.00 43.43 3.18
939 954 5.419542 ACAGTGACGCACTATAATGTTCAT 58.580 37.500 11.31 0.00 43.43 2.57
940 955 5.874810 ACAGTGACGCACTATAATGTTCATT 59.125 36.000 11.31 3.55 43.43 2.57
941 956 6.183360 ACAGTGACGCACTATAATGTTCATTG 60.183 38.462 11.31 8.08 43.43 2.82
942 957 5.294306 AGTGACGCACTATAATGTTCATTGG 59.706 40.000 10.20 2.21 43.46 3.16
943 958 4.574421 TGACGCACTATAATGTTCATTGGG 59.426 41.667 8.11 3.41 0.00 4.12
944 959 3.315191 ACGCACTATAATGTTCATTGGGC 59.685 43.478 8.11 3.98 0.00 5.36
945 960 3.606846 CGCACTATAATGTTCATTGGGCG 60.607 47.826 13.46 13.46 42.68 6.13
946 961 3.853307 GCACTATAATGTTCATTGGGCGC 60.853 47.826 0.00 0.00 0.00 6.53
947 962 2.548057 ACTATAATGTTCATTGGGCGCG 59.452 45.455 0.00 0.00 0.00 6.86
948 963 0.667993 ATAATGTTCATTGGGCGCGG 59.332 50.000 8.83 0.00 0.00 6.46
949 964 0.393132 TAATGTTCATTGGGCGCGGA 60.393 50.000 8.83 0.00 0.00 5.54
950 965 1.656818 AATGTTCATTGGGCGCGGAG 61.657 55.000 8.83 0.00 0.00 4.63
951 966 2.746277 GTTCATTGGGCGCGGAGT 60.746 61.111 8.83 0.00 0.00 3.85
952 967 2.745884 TTCATTGGGCGCGGAGTG 60.746 61.111 8.83 0.00 43.41 3.51
953 968 3.545124 TTCATTGGGCGCGGAGTGT 62.545 57.895 8.83 0.00 41.96 3.55
954 969 3.055719 CATTGGGCGCGGAGTGTT 61.056 61.111 8.83 0.00 41.96 3.32
955 970 2.746277 ATTGGGCGCGGAGTGTTC 60.746 61.111 8.83 0.00 41.96 3.18
956 971 3.254024 ATTGGGCGCGGAGTGTTCT 62.254 57.895 8.83 0.00 41.96 3.01
957 972 2.748058 ATTGGGCGCGGAGTGTTCTT 62.748 55.000 8.83 0.00 41.96 2.52
958 973 3.423154 GGGCGCGGAGTGTTCTTG 61.423 66.667 8.83 0.00 41.96 3.02
959 974 4.090057 GGCGCGGAGTGTTCTTGC 62.090 66.667 8.83 0.00 41.96 4.01
960 975 4.430423 GCGCGGAGTGTTCTTGCG 62.430 66.667 8.83 0.00 45.07 4.85
963 978 3.423154 CGGAGTGTTCTTGCGCCC 61.423 66.667 4.18 0.00 0.00 6.13
964 979 3.423154 GGAGTGTTCTTGCGCCCG 61.423 66.667 4.18 0.00 0.00 6.13
965 980 2.665185 GAGTGTTCTTGCGCCCGT 60.665 61.111 4.18 0.00 0.00 5.28
966 981 2.203153 AGTGTTCTTGCGCCCGTT 60.203 55.556 4.18 0.00 0.00 4.44
967 982 2.051345 GTGTTCTTGCGCCCGTTG 60.051 61.111 4.18 0.00 0.00 4.10
968 983 3.283684 TGTTCTTGCGCCCGTTGG 61.284 61.111 4.18 0.00 0.00 3.77
969 984 2.975799 GTTCTTGCGCCCGTTGGA 60.976 61.111 4.18 0.00 0.00 3.53
970 985 2.668212 TTCTTGCGCCCGTTGGAG 60.668 61.111 4.18 0.00 34.00 3.86
971 986 3.171828 TTCTTGCGCCCGTTGGAGA 62.172 57.895 4.18 0.00 32.25 3.71
972 987 2.436646 CTTGCGCCCGTTGGAGAT 60.437 61.111 4.18 0.00 32.25 2.75
973 988 2.745884 TTGCGCCCGTTGGAGATG 60.746 61.111 4.18 0.00 32.25 2.90
976 991 2.892425 CGCCCGTTGGAGATGCTC 60.892 66.667 0.00 0.00 32.25 4.26
1022 1037 3.816920 CACGACGACGCAAGCGAG 61.817 66.667 22.30 15.98 43.96 5.03
1316 1331 8.392612 TCAATTCATTCATATATGCACGCATAG 58.607 33.333 16.23 4.52 41.51 2.23
1339 1360 2.855963 CAACCGCATCAGCATTTTCATC 59.144 45.455 0.00 0.00 42.27 2.92
1340 1361 2.093890 ACCGCATCAGCATTTTCATCA 58.906 42.857 0.00 0.00 42.27 3.07
1341 1362 2.492881 ACCGCATCAGCATTTTCATCAA 59.507 40.909 0.00 0.00 42.27 2.57
1342 1363 2.855963 CCGCATCAGCATTTTCATCAAC 59.144 45.455 0.00 0.00 42.27 3.18
1343 1364 3.428452 CCGCATCAGCATTTTCATCAACT 60.428 43.478 0.00 0.00 42.27 3.16
1345 1366 4.110482 GCATCAGCATTTTCATCAACTCC 58.890 43.478 0.00 0.00 41.58 3.85
1532 1562 2.128729 CTCCCCGTTGAGGAGGATC 58.871 63.158 0.00 0.00 46.14 3.36
1817 1847 3.771160 ACGTGGCGGTCCTCCATC 61.771 66.667 3.31 0.00 35.81 3.51
1978 2009 1.780806 CATGCATAGGACGAGAGCAG 58.219 55.000 0.00 0.00 38.75 4.24
2003 2034 0.877071 ATCAGCAAAGTGAAGTGCGG 59.123 50.000 0.00 0.00 45.62 5.69
2037 2069 4.338118 TGTCGACATGCATGTAGATGTAGA 59.662 41.667 35.09 21.10 42.76 2.59
2043 2075 7.382218 CGACATGCATGTAGATGTAGACATTTA 59.618 37.037 31.45 0.00 41.95 1.40
2052 2084 2.434336 ATGTAGACATTTAGCGGAGCCA 59.566 45.455 0.00 0.00 45.75 4.75
2137 2170 0.178068 GCTGGGCATCGAGTAAGGAA 59.822 55.000 0.00 0.00 0.00 3.36
2140 2173 2.874701 CTGGGCATCGAGTAAGGAAATG 59.125 50.000 0.00 0.00 0.00 2.32
2326 2418 1.351012 CGGCTACTCGTACTCGGTG 59.649 63.158 0.00 0.00 37.69 4.94
2332 2424 1.511464 CTCGTACTCGGTGTGTCGC 60.511 63.158 0.00 0.00 37.69 5.19
2350 2442 2.273449 CCCAGCGGCTTTCCAGAT 59.727 61.111 0.00 0.00 0.00 2.90
2361 2453 3.091545 GCTTTCCAGATTCCCATGTGAA 58.908 45.455 0.00 0.00 0.00 3.18
2362 2454 3.511146 GCTTTCCAGATTCCCATGTGAAA 59.489 43.478 0.00 0.00 0.00 2.69
2363 2455 4.619160 GCTTTCCAGATTCCCATGTGAAAC 60.619 45.833 0.00 0.00 37.35 2.78
2364 2456 4.387026 TTCCAGATTCCCATGTGAAACT 57.613 40.909 0.00 0.00 38.04 2.66
2365 2457 3.689347 TCCAGATTCCCATGTGAAACTG 58.311 45.455 17.48 17.48 41.92 3.16
2366 2458 3.330405 TCCAGATTCCCATGTGAAACTGA 59.670 43.478 23.42 11.08 43.78 3.41
2367 2459 3.693085 CCAGATTCCCATGTGAAACTGAG 59.307 47.826 23.42 13.11 43.78 3.35
2370 2462 1.444933 TCCCATGTGAAACTGAGGGT 58.555 50.000 0.00 0.00 41.48 4.34
2371 2463 2.626785 TCCCATGTGAAACTGAGGGTA 58.373 47.619 0.00 0.00 41.48 3.69
2372 2464 2.983192 TCCCATGTGAAACTGAGGGTAA 59.017 45.455 0.00 0.00 41.48 2.85
2373 2465 3.396276 TCCCATGTGAAACTGAGGGTAAA 59.604 43.478 0.00 0.00 41.48 2.01
2374 2466 4.141135 TCCCATGTGAAACTGAGGGTAAAA 60.141 41.667 0.00 0.00 41.48 1.52
2375 2467 4.218417 CCCATGTGAAACTGAGGGTAAAAG 59.782 45.833 0.00 0.00 37.84 2.27
2378 2470 4.469657 TGTGAAACTGAGGGTAAAAGCAT 58.530 39.130 0.00 0.00 38.04 3.79
2380 2472 4.762251 GTGAAACTGAGGGTAAAAGCATCT 59.238 41.667 0.00 0.00 0.00 2.90
2381 2473 5.003804 TGAAACTGAGGGTAAAAGCATCTC 58.996 41.667 0.00 0.00 0.00 2.75
2382 2474 3.636153 ACTGAGGGTAAAAGCATCTCC 57.364 47.619 0.00 0.00 0.00 3.71
2383 2475 2.912956 ACTGAGGGTAAAAGCATCTCCA 59.087 45.455 0.00 0.00 0.00 3.86
2384 2476 3.054802 ACTGAGGGTAAAAGCATCTCCAG 60.055 47.826 0.00 0.00 0.00 3.86
2385 2477 2.293170 GAGGGTAAAAGCATCTCCAGC 58.707 52.381 0.00 0.00 0.00 4.85
2387 2479 1.340991 GGGTAAAAGCATCTCCAGCCA 60.341 52.381 0.00 0.00 0.00 4.75
2388 2480 1.745653 GGTAAAAGCATCTCCAGCCAC 59.254 52.381 0.00 0.00 0.00 5.01
2389 2481 1.398390 GTAAAAGCATCTCCAGCCACG 59.602 52.381 0.00 0.00 0.00 4.94
2390 2482 1.589716 AAAAGCATCTCCAGCCACGC 61.590 55.000 0.00 0.00 0.00 5.34
2393 2485 4.864334 CATCTCCAGCCACGCCCC 62.864 72.222 0.00 0.00 0.00 5.80
2409 2501 4.722700 CCCAACAGGCCTCCGGTG 62.723 72.222 0.00 0.36 31.24 4.94
2410 2502 3.953775 CCAACAGGCCTCCGGTGT 61.954 66.667 0.00 0.00 31.24 4.16
2411 2503 2.113139 CAACAGGCCTCCGGTGTT 59.887 61.111 0.00 0.78 34.72 3.32
2412 2504 1.528309 CAACAGGCCTCCGGTGTTT 60.528 57.895 0.00 0.00 32.01 2.83
2413 2505 1.228154 AACAGGCCTCCGGTGTTTC 60.228 57.895 0.00 0.00 31.24 2.78
2414 2506 1.705997 AACAGGCCTCCGGTGTTTCT 61.706 55.000 0.00 0.00 31.24 2.52
2415 2507 1.073199 CAGGCCTCCGGTGTTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
2416 2508 0.537371 CAGGCCTCCGGTGTTTCTTT 60.537 55.000 0.00 0.00 0.00 2.52
2417 2509 1.061546 AGGCCTCCGGTGTTTCTTTA 58.938 50.000 0.00 0.00 0.00 1.85
2418 2510 1.003233 AGGCCTCCGGTGTTTCTTTAG 59.997 52.381 0.00 0.00 0.00 1.85
2419 2511 0.803117 GCCTCCGGTGTTTCTTTAGC 59.197 55.000 0.00 0.00 0.00 3.09
2420 2512 1.076332 CCTCCGGTGTTTCTTTAGCG 58.924 55.000 0.00 0.00 37.53 4.26
2421 2513 1.607251 CCTCCGGTGTTTCTTTAGCGT 60.607 52.381 0.00 0.00 36.18 5.07
2422 2514 2.140717 CTCCGGTGTTTCTTTAGCGTT 58.859 47.619 0.00 0.00 36.18 4.84
2423 2515 1.868498 TCCGGTGTTTCTTTAGCGTTG 59.132 47.619 0.00 0.00 36.18 4.10
2424 2516 1.868498 CCGGTGTTTCTTTAGCGTTGA 59.132 47.619 0.00 0.00 36.18 3.18
2426 2518 2.658224 CGGTGTTTCTTTAGCGTTGACG 60.658 50.000 0.00 0.00 43.27 4.35
2439 2531 2.887733 CGTTGACGCTTAATAATCGGC 58.112 47.619 1.38 0.00 0.00 5.54
2440 2532 2.348218 CGTTGACGCTTAATAATCGGCC 60.348 50.000 0.00 0.00 0.00 6.13
2444 2536 4.890088 TGACGCTTAATAATCGGCCTAAT 58.110 39.130 0.00 0.00 0.00 1.73
2446 2538 3.924686 ACGCTTAATAATCGGCCTAATCG 59.075 43.478 0.00 1.42 0.00 3.34
2448 2540 4.201589 CGCTTAATAATCGGCCTAATCGTG 60.202 45.833 0.00 0.00 0.00 4.35
2452 2544 0.874607 AATCGGCCTAATCGTGTCGC 60.875 55.000 0.00 0.00 0.00 5.19
2454 2546 1.591594 CGGCCTAATCGTGTCGCAT 60.592 57.895 0.00 0.00 0.00 4.73
2455 2547 0.318360 CGGCCTAATCGTGTCGCATA 60.318 55.000 0.00 0.00 0.00 3.14
2456 2548 1.860676 GGCCTAATCGTGTCGCATAA 58.139 50.000 0.00 0.00 0.00 1.90
2457 2549 2.206750 GGCCTAATCGTGTCGCATAAA 58.793 47.619 0.00 0.00 0.00 1.40
2458 2550 2.806244 GGCCTAATCGTGTCGCATAAAT 59.194 45.455 0.00 0.00 0.00 1.40
2459 2551 3.120649 GGCCTAATCGTGTCGCATAAATC 60.121 47.826 0.00 0.00 0.00 2.17
2460 2552 3.120649 GCCTAATCGTGTCGCATAAATCC 60.121 47.826 0.00 0.00 0.00 3.01
2461 2553 4.055360 CCTAATCGTGTCGCATAAATCCA 58.945 43.478 0.00 0.00 0.00 3.41
2466 2558 5.303747 TCGTGTCGCATAAATCCATTTTT 57.696 34.783 0.00 0.00 0.00 1.94
2489 2581 8.938047 TTTTGTCGGTTTAGATCGAAATTAAC 57.062 30.769 4.23 4.23 37.14 2.01
2490 2582 6.321873 TGTCGGTTTAGATCGAAATTAACG 57.678 37.500 4.23 7.53 37.14 3.18
2492 2584 6.033831 TGTCGGTTTAGATCGAAATTAACGTC 59.966 38.462 4.23 6.25 37.14 4.34
2493 2585 5.227805 TCGGTTTAGATCGAAATTAACGTCG 59.772 40.000 4.23 3.74 38.62 5.12
2494 2586 5.553211 CGGTTTAGATCGAAATTAACGTCGG 60.553 44.000 4.23 0.00 37.84 4.79
2495 2587 5.186053 GTTTAGATCGAAATTAACGTCGGC 58.814 41.667 4.23 3.63 37.84 5.54
2498 2590 0.109365 TCGAAATTAACGTCGGCGGA 60.109 50.000 16.39 0.00 43.45 5.54
2499 2591 0.024111 CGAAATTAACGTCGGCGGAC 59.976 55.000 16.39 14.05 43.45 4.79
2500 2592 0.371301 GAAATTAACGTCGGCGGACC 59.629 55.000 16.39 1.89 43.45 4.46
2501 2593 1.020861 AAATTAACGTCGGCGGACCC 61.021 55.000 16.39 0.00 43.45 4.46
2502 2594 2.169937 AATTAACGTCGGCGGACCCA 62.170 55.000 16.39 1.49 43.45 4.51
2503 2595 2.567564 ATTAACGTCGGCGGACCCAG 62.568 60.000 16.39 7.43 43.45 4.45
2513 2605 4.078516 GGACCCAGACCGAACCCG 62.079 72.222 0.00 0.00 0.00 5.28
2514 2606 2.993264 GACCCAGACCGAACCCGA 60.993 66.667 0.00 0.00 38.22 5.14
2516 2608 3.307906 CCCAGACCGAACCCGACA 61.308 66.667 0.00 0.00 38.22 4.35
2517 2609 2.048503 CCAGACCGAACCCGACAC 60.049 66.667 0.00 0.00 38.22 3.67
2518 2610 2.430244 CAGACCGAACCCGACACG 60.430 66.667 0.00 0.00 38.22 4.49
2519 2611 4.353437 AGACCGAACCCGACACGC 62.353 66.667 0.00 0.00 38.22 5.34
2520 2612 4.353437 GACCGAACCCGACACGCT 62.353 66.667 0.00 0.00 38.22 5.07
2521 2613 4.657824 ACCGAACCCGACACGCTG 62.658 66.667 0.00 0.00 38.22 5.18
2546 2638 4.436998 GAGACACCGGGGCACTCG 62.437 72.222 1.73 0.00 0.00 4.18
2547 2639 4.988716 AGACACCGGGGCACTCGA 62.989 66.667 1.73 0.00 0.00 4.04
2548 2640 3.771160 GACACCGGGGCACTCGAT 61.771 66.667 1.73 0.00 0.00 3.59
2552 2644 1.674322 ACCGGGGCACTCGATTTTG 60.674 57.895 6.32 0.00 0.00 2.44
2554 2646 2.885113 GGGGCACTCGATTTTGGC 59.115 61.111 6.79 6.79 37.56 4.52
2555 2647 1.976474 GGGGCACTCGATTTTGGCA 60.976 57.895 14.65 0.00 40.00 4.92
2557 2649 0.179129 GGGCACTCGATTTTGGCATG 60.179 55.000 14.65 0.00 40.00 4.06
2561 2975 2.919229 GCACTCGATTTTGGCATGAAAG 59.081 45.455 0.00 0.00 0.00 2.62
2564 2978 4.618489 CACTCGATTTTGGCATGAAAGAAC 59.382 41.667 0.00 0.00 0.00 3.01
2573 2987 5.964958 TGGCATGAAAGAACTCTAAAAGG 57.035 39.130 0.00 0.00 0.00 3.11
2575 2989 5.473504 TGGCATGAAAGAACTCTAAAAGGAC 59.526 40.000 0.00 0.00 0.00 3.85
2576 2990 5.473504 GGCATGAAAGAACTCTAAAAGGACA 59.526 40.000 0.00 0.00 0.00 4.02
2577 2991 6.016276 GGCATGAAAGAACTCTAAAAGGACAA 60.016 38.462 0.00 0.00 0.00 3.18
2578 2992 6.858478 GCATGAAAGAACTCTAAAAGGACAAC 59.142 38.462 0.00 0.00 0.00 3.32
2579 2993 7.468631 GCATGAAAGAACTCTAAAAGGACAACA 60.469 37.037 0.00 0.00 0.00 3.33
2583 3535 6.867662 AGAACTCTAAAAGGACAACATGTG 57.132 37.500 0.00 0.00 0.00 3.21
2584 3536 6.357367 AGAACTCTAAAAGGACAACATGTGT 58.643 36.000 0.00 0.00 45.74 3.72
2590 3542 8.094798 TCTAAAAGGACAACATGTGTAATGAC 57.905 34.615 0.00 0.00 41.96 3.06
2639 3591 9.528489 TCAATACTCTTAAGCCTTTAAAACCAT 57.472 29.630 0.00 0.00 0.00 3.55
2676 3628 6.699575 AGAGTGCACTATTTTGTCAAACTT 57.300 33.333 21.73 0.00 0.00 2.66
2677 3629 6.498304 AGAGTGCACTATTTTGTCAAACTTG 58.502 36.000 21.73 0.00 0.00 3.16
2682 3634 5.858581 GCACTATTTTGTCAAACTTGCTAGG 59.141 40.000 0.00 0.00 0.00 3.02
2754 3707 7.435068 GTACACATGTACTCCATTTGAACTT 57.565 36.000 13.76 0.00 45.47 2.66
2861 3815 9.676861 TCATCCCAAATAGTTCATCATCATATC 57.323 33.333 0.00 0.00 0.00 1.63
2862 3816 9.457436 CATCCCAAATAGTTCATCATCATATCA 57.543 33.333 0.00 0.00 0.00 2.15
2918 3889 0.944311 CACCCACACTGCTACGACAC 60.944 60.000 0.00 0.00 0.00 3.67
2974 3945 1.821088 ACCACTCCCTCCTCAAAGTT 58.179 50.000 0.00 0.00 0.00 2.66
2982 3964 2.742589 CCCTCCTCAAAGTTTTCGCTAC 59.257 50.000 0.00 0.00 0.00 3.58
2986 3968 3.146847 CCTCAAAGTTTTCGCTACCCTT 58.853 45.455 0.00 0.00 0.00 3.95
2987 3969 3.058224 CCTCAAAGTTTTCGCTACCCTTG 60.058 47.826 0.00 0.00 0.00 3.61
3010 3992 1.559368 CCAACATCTTTGCCCATCCA 58.441 50.000 0.00 0.00 0.00 3.41
3078 4060 3.211865 GAGCATGATCATTGCTTCCTCA 58.788 45.455 24.17 0.00 39.21 3.86
3079 4061 3.821600 GAGCATGATCATTGCTTCCTCAT 59.178 43.478 24.17 8.78 39.21 2.90
3089 4071 6.286758 TCATTGCTTCCTCATTATGACTCTC 58.713 40.000 0.00 0.00 0.00 3.20
3098 4080 5.476599 CCTCATTATGACTCTCCTACCTCAG 59.523 48.000 0.00 0.00 0.00 3.35
3099 4081 4.830046 TCATTATGACTCTCCTACCTCAGC 59.170 45.833 0.00 0.00 0.00 4.26
3101 4083 1.003646 TGACTCTCCTACCTCAGCCT 58.996 55.000 0.00 0.00 0.00 4.58
3102 4084 1.341482 TGACTCTCCTACCTCAGCCTG 60.341 57.143 0.00 0.00 0.00 4.85
3103 4085 0.707616 ACTCTCCTACCTCAGCCTGT 59.292 55.000 0.00 0.00 0.00 4.00
3104 4086 1.341581 ACTCTCCTACCTCAGCCTGTC 60.342 57.143 0.00 0.00 0.00 3.51
3105 4087 0.033011 TCTCCTACCTCAGCCTGTCC 60.033 60.000 0.00 0.00 0.00 4.02
3110 4092 0.324738 TACCTCAGCCTGTCCTCCTG 60.325 60.000 0.00 0.00 0.00 3.86
3111 4093 1.305633 CCTCAGCCTGTCCTCCTGA 60.306 63.158 0.00 0.00 34.68 3.86
3112 4094 0.906756 CCTCAGCCTGTCCTCCTGAA 60.907 60.000 0.00 0.00 35.41 3.02
3113 4095 0.536260 CTCAGCCTGTCCTCCTGAAG 59.464 60.000 0.00 0.00 35.41 3.02
3116 4098 1.066286 CAGCCTGTCCTCCTGAAGAAG 60.066 57.143 0.00 0.00 0.00 2.85
3118 4100 1.625818 GCCTGTCCTCCTGAAGAAGAA 59.374 52.381 0.00 0.00 0.00 2.52
3120 4102 2.903135 CCTGTCCTCCTGAAGAAGAAGT 59.097 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.733458 CGGATCAAAATGTTCATCCATATGTAT 58.267 33.333 0.00 0.00 35.42 2.29
4 5 7.719193 ACGGATCAAAATGTTCATCCATATGTA 59.281 33.333 0.00 0.00 35.42 2.29
5 6 6.547141 ACGGATCAAAATGTTCATCCATATGT 59.453 34.615 0.00 0.00 35.42 2.29
6 7 6.973843 ACGGATCAAAATGTTCATCCATATG 58.026 36.000 0.00 0.00 35.42 1.78
7 8 8.733458 CATACGGATCAAAATGTTCATCCATAT 58.267 33.333 0.00 0.00 35.42 1.78
8 9 7.719193 ACATACGGATCAAAATGTTCATCCATA 59.281 33.333 0.00 0.00 35.42 2.74
9 10 6.547141 ACATACGGATCAAAATGTTCATCCAT 59.453 34.615 0.00 0.00 35.42 3.41
10 11 5.885352 ACATACGGATCAAAATGTTCATCCA 59.115 36.000 0.00 0.00 35.42 3.41
11 12 6.377327 ACATACGGATCAAAATGTTCATCC 57.623 37.500 0.00 0.00 32.75 3.51
12 13 8.142994 ACTACATACGGATCAAAATGTTCATC 57.857 34.615 10.22 0.00 34.54 2.92
13 14 7.987458 AGACTACATACGGATCAAAATGTTCAT 59.013 33.333 10.22 0.07 34.54 2.57
14 15 7.327975 AGACTACATACGGATCAAAATGTTCA 58.672 34.615 10.22 0.00 34.54 3.18
15 16 7.772332 AGACTACATACGGATCAAAATGTTC 57.228 36.000 10.22 4.95 34.54 3.18
21 22 9.570468 AGTTCTATAGACTACATACGGATCAAA 57.430 33.333 0.67 0.00 0.00 2.69
23 24 9.650539 GTAGTTCTATAGACTACATACGGATCA 57.349 37.037 23.47 0.00 37.05 2.92
24 25 9.650539 TGTAGTTCTATAGACTACATACGGATC 57.349 37.037 25.36 9.95 40.66 3.36
154 155 9.671279 TCTTTTCAGAGATACATATGAAGCAAA 57.329 29.630 10.38 0.00 33.53 3.68
155 156 9.102757 GTCTTTTCAGAGATACATATGAAGCAA 57.897 33.333 10.38 0.00 33.53 3.91
156 157 8.481314 AGTCTTTTCAGAGATACATATGAAGCA 58.519 33.333 10.38 0.00 33.53 3.91
157 158 8.885494 AGTCTTTTCAGAGATACATATGAAGC 57.115 34.615 10.38 0.00 33.53 3.86
165 166 9.996554 TTCAATGTAAGTCTTTTCAGAGATACA 57.003 29.630 0.00 0.00 36.45 2.29
169 170 9.784531 AGATTTCAATGTAAGTCTTTTCAGAGA 57.215 29.630 0.00 0.00 0.00 3.10
171 172 9.784531 AGAGATTTCAATGTAAGTCTTTTCAGA 57.215 29.630 0.00 0.00 0.00 3.27
172 173 9.823098 CAGAGATTTCAATGTAAGTCTTTTCAG 57.177 33.333 0.00 0.00 0.00 3.02
173 174 9.559732 TCAGAGATTTCAATGTAAGTCTTTTCA 57.440 29.630 0.00 0.00 0.00 2.69
175 176 9.784531 TCTCAGAGATTTCAATGTAAGTCTTTT 57.215 29.630 0.00 0.00 0.00 2.27
176 177 9.784531 TTCTCAGAGATTTCAATGTAAGTCTTT 57.215 29.630 0.00 0.00 0.00 2.52
177 178 9.956640 ATTCTCAGAGATTTCAATGTAAGTCTT 57.043 29.630 0.00 0.00 0.00 3.01
204 205 8.960064 ACAATCCCTCCATTCCTAAATATAAGT 58.040 33.333 0.00 0.00 0.00 2.24
205 206 9.454859 GACAATCCCTCCATTCCTAAATATAAG 57.545 37.037 0.00 0.00 0.00 1.73
206 207 8.390921 GGACAATCCCTCCATTCCTAAATATAA 58.609 37.037 0.00 0.00 0.00 0.98
207 208 7.744068 AGGACAATCCCTCCATTCCTAAATATA 59.256 37.037 0.00 0.00 37.19 0.86
208 209 6.568040 AGGACAATCCCTCCATTCCTAAATAT 59.432 38.462 0.00 0.00 37.19 1.28
209 210 5.917087 AGGACAATCCCTCCATTCCTAAATA 59.083 40.000 0.00 0.00 37.19 1.40
210 211 4.733988 AGGACAATCCCTCCATTCCTAAAT 59.266 41.667 0.00 0.00 37.19 1.40
211 212 4.119155 AGGACAATCCCTCCATTCCTAAA 58.881 43.478 0.00 0.00 37.19 1.85
212 213 3.747852 AGGACAATCCCTCCATTCCTAA 58.252 45.455 0.00 0.00 37.19 2.69
213 214 3.438131 AGGACAATCCCTCCATTCCTA 57.562 47.619 0.00 0.00 37.19 2.94
214 215 2.293598 AGGACAATCCCTCCATTCCT 57.706 50.000 0.00 0.00 37.19 3.36
215 216 5.310857 AGTTATAGGACAATCCCTCCATTCC 59.689 44.000 0.00 0.00 37.19 3.01
216 217 6.271159 AGAGTTATAGGACAATCCCTCCATTC 59.729 42.308 0.00 0.00 37.19 2.67
217 218 6.153924 AGAGTTATAGGACAATCCCTCCATT 58.846 40.000 0.00 0.00 37.19 3.16
218 219 5.731924 AGAGTTATAGGACAATCCCTCCAT 58.268 41.667 0.00 0.00 37.19 3.41
219 220 5.157770 AGAGTTATAGGACAATCCCTCCA 57.842 43.478 0.00 0.00 37.19 3.86
220 221 6.211785 CCTTAGAGTTATAGGACAATCCCTCC 59.788 46.154 0.00 0.00 37.19 4.30
221 222 6.783482 ACCTTAGAGTTATAGGACAATCCCTC 59.217 42.308 0.00 0.00 37.19 4.30
222 223 6.555360 CACCTTAGAGTTATAGGACAATCCCT 59.445 42.308 0.00 0.00 37.19 4.20
223 224 6.553852 TCACCTTAGAGTTATAGGACAATCCC 59.446 42.308 0.00 0.00 37.19 3.85
224 225 7.598759 TCACCTTAGAGTTATAGGACAATCC 57.401 40.000 0.00 0.00 36.58 3.01
225 226 9.699703 GATTCACCTTAGAGTTATAGGACAATC 57.300 37.037 0.00 0.00 33.21 2.67
226 227 9.213777 TGATTCACCTTAGAGTTATAGGACAAT 57.786 33.333 0.00 0.00 33.21 2.71
227 228 8.603898 TGATTCACCTTAGAGTTATAGGACAA 57.396 34.615 0.00 0.00 33.21 3.18
228 229 8.603898 TTGATTCACCTTAGAGTTATAGGACA 57.396 34.615 0.00 0.00 33.21 4.02
229 230 9.535878 CTTTGATTCACCTTAGAGTTATAGGAC 57.464 37.037 0.00 0.00 33.21 3.85
234 235 7.918076 TGTCCTTTGATTCACCTTAGAGTTAT 58.082 34.615 0.00 0.00 0.00 1.89
239 240 6.013379 AGTGATGTCCTTTGATTCACCTTAGA 60.013 38.462 0.00 0.00 37.27 2.10
240 241 6.176183 AGTGATGTCCTTTGATTCACCTTAG 58.824 40.000 0.00 0.00 37.27 2.18
244 245 5.712152 AAAGTGATGTCCTTTGATTCACC 57.288 39.130 0.00 0.00 37.27 4.02
270 271 9.830975 TCATCTATTTCAAATTCGACAGGAATA 57.169 29.630 0.00 0.00 44.59 1.75
277 278 9.773328 TGAAATGTCATCTATTTCAAATTCGAC 57.227 29.630 9.86 0.00 46.04 4.20
331 336 4.157246 TGCTTCGGTGGGTATGAGTATAT 58.843 43.478 0.00 0.00 0.00 0.86
332 337 3.568443 TGCTTCGGTGGGTATGAGTATA 58.432 45.455 0.00 0.00 0.00 1.47
409 414 9.744468 TCTTAAAGAAACCACTCTTAAATTTGC 57.256 29.630 0.00 0.00 34.49 3.68
411 416 9.967346 GCTCTTAAAGAAACCACTCTTAAATTT 57.033 29.630 0.00 0.00 34.49 1.82
422 427 3.071892 TCCTTCGGCTCTTAAAGAAACCA 59.928 43.478 0.00 0.00 0.00 3.67
428 433 5.181245 TGTGAAATTCCTTCGGCTCTTAAAG 59.819 40.000 0.00 0.00 36.78 1.85
438 443 3.365364 GGCACTTCTGTGAAATTCCTTCG 60.365 47.826 0.00 0.00 46.55 3.79
453 458 2.334838 CAGTAACCTACACGGCACTTC 58.665 52.381 0.00 0.00 35.61 3.01
460 466 4.196626 TCCAATTCCAGTAACCTACACG 57.803 45.455 0.00 0.00 0.00 4.49
468 474 4.724399 TGCTGAAGTTCCAATTCCAGTAA 58.276 39.130 0.00 0.00 0.00 2.24
479 485 7.370383 TGATGTAAAATTCTTGCTGAAGTTCC 58.630 34.615 0.00 2.82 41.37 3.62
530 536 4.795970 AGTGTTTGCTGTAAACTTCTCG 57.204 40.909 19.50 0.00 46.96 4.04
531 537 6.119144 TGAAGTGTTTGCTGTAAACTTCTC 57.881 37.500 19.50 13.47 46.96 2.87
532 538 5.449177 GCTGAAGTGTTTGCTGTAAACTTCT 60.449 40.000 19.50 14.90 46.96 2.85
533 539 4.735338 GCTGAAGTGTTTGCTGTAAACTTC 59.265 41.667 19.50 16.00 46.96 3.01
568 583 1.125566 GCGCGTAGGAACAGTTTGTAC 59.874 52.381 8.43 0.00 0.00 2.90
578 593 1.141019 GATGTCAGGCGCGTAGGAA 59.859 57.895 8.43 0.00 0.00 3.36
600 615 3.126001 TGTTGGGAGACTGTTGATGAC 57.874 47.619 0.00 0.00 0.00 3.06
601 616 3.855255 TTGTTGGGAGACTGTTGATGA 57.145 42.857 0.00 0.00 0.00 2.92
605 620 4.455877 GGAGTATTTGTTGGGAGACTGTTG 59.544 45.833 0.00 0.00 0.00 3.33
607 622 3.910627 AGGAGTATTTGTTGGGAGACTGT 59.089 43.478 0.00 0.00 0.00 3.55
609 624 5.091552 TGTAGGAGTATTTGTTGGGAGACT 58.908 41.667 0.00 0.00 0.00 3.24
610 625 5.416271 TGTAGGAGTATTTGTTGGGAGAC 57.584 43.478 0.00 0.00 0.00 3.36
611 626 5.724370 TCATGTAGGAGTATTTGTTGGGAGA 59.276 40.000 0.00 0.00 0.00 3.71
612 627 5.817816 GTCATGTAGGAGTATTTGTTGGGAG 59.182 44.000 0.00 0.00 0.00 4.30
613 628 5.625886 CGTCATGTAGGAGTATTTGTTGGGA 60.626 44.000 0.00 0.00 0.00 4.37
614 629 4.570772 CGTCATGTAGGAGTATTTGTTGGG 59.429 45.833 0.00 0.00 0.00 4.12
615 630 4.570772 CCGTCATGTAGGAGTATTTGTTGG 59.429 45.833 3.63 0.00 0.00 3.77
626 641 2.730382 TGCTCTAACCGTCATGTAGGA 58.270 47.619 14.41 0.00 0.00 2.94
627 642 3.319405 AGATGCTCTAACCGTCATGTAGG 59.681 47.826 7.49 7.49 0.00 3.18
628 643 4.576216 AGATGCTCTAACCGTCATGTAG 57.424 45.455 0.00 0.00 0.00 2.74
629 644 4.401202 TGAAGATGCTCTAACCGTCATGTA 59.599 41.667 0.00 0.00 0.00 2.29
630 645 3.195610 TGAAGATGCTCTAACCGTCATGT 59.804 43.478 0.00 0.00 0.00 3.21
631 646 3.785486 TGAAGATGCTCTAACCGTCATG 58.215 45.455 0.00 0.00 0.00 3.07
632 647 4.184629 GTTGAAGATGCTCTAACCGTCAT 58.815 43.478 0.00 0.00 0.00 3.06
634 649 3.585862 TGTTGAAGATGCTCTAACCGTC 58.414 45.455 0.00 0.00 0.00 4.79
635 650 3.678056 TGTTGAAGATGCTCTAACCGT 57.322 42.857 0.00 0.00 0.00 4.83
636 651 5.356882 TTTTGTTGAAGATGCTCTAACCG 57.643 39.130 0.00 0.00 0.00 4.44
639 654 5.299028 TGTGCTTTTGTTGAAGATGCTCTAA 59.701 36.000 0.00 0.00 0.00 2.10
640 655 4.821260 TGTGCTTTTGTTGAAGATGCTCTA 59.179 37.500 0.00 0.00 0.00 2.43
641 656 3.633525 TGTGCTTTTGTTGAAGATGCTCT 59.366 39.130 0.00 0.00 0.00 4.09
642 657 3.968649 TGTGCTTTTGTTGAAGATGCTC 58.031 40.909 0.00 0.00 0.00 4.26
643 658 4.389890 TTGTGCTTTTGTTGAAGATGCT 57.610 36.364 0.00 0.00 0.00 3.79
644 659 5.467902 TTTTGTGCTTTTGTTGAAGATGC 57.532 34.783 0.00 0.00 0.00 3.91
645 660 7.293402 TCTTTTTGTGCTTTTGTTGAAGATG 57.707 32.000 0.00 0.00 0.00 2.90
646 661 6.036408 GCTCTTTTTGTGCTTTTGTTGAAGAT 59.964 34.615 0.00 0.00 32.89 2.40
647 662 5.348451 GCTCTTTTTGTGCTTTTGTTGAAGA 59.652 36.000 0.00 0.00 32.89 2.87
648 663 5.349543 AGCTCTTTTTGTGCTTTTGTTGAAG 59.650 36.000 0.00 0.00 42.11 3.02
649 664 5.237048 AGCTCTTTTTGTGCTTTTGTTGAA 58.763 33.333 0.00 0.00 42.11 2.69
650 665 4.819769 AGCTCTTTTTGTGCTTTTGTTGA 58.180 34.783 0.00 0.00 42.11 3.18
651 666 4.033243 GGAGCTCTTTTTGTGCTTTTGTTG 59.967 41.667 14.64 0.00 44.42 3.33
652 667 4.183865 GGAGCTCTTTTTGTGCTTTTGTT 58.816 39.130 14.64 0.00 44.42 2.83
653 668 3.734902 CGGAGCTCTTTTTGTGCTTTTGT 60.735 43.478 14.64 0.00 44.42 2.83
654 669 2.791004 CGGAGCTCTTTTTGTGCTTTTG 59.209 45.455 14.64 0.00 44.42 2.44
655 670 3.084070 CGGAGCTCTTTTTGTGCTTTT 57.916 42.857 14.64 0.00 44.42 2.27
656 671 2.781945 CGGAGCTCTTTTTGTGCTTT 57.218 45.000 14.64 0.00 44.42 3.51
668 683 8.775273 AAAATAAATTTTTAGTGCGCGGAGCTC 61.775 37.037 8.83 4.71 44.33 4.09
669 684 7.064029 AAAATAAATTTTTAGTGCGCGGAGCT 61.064 34.615 8.83 8.13 44.33 4.09
670 685 5.061684 AAAATAAATTTTTAGTGCGCGGAGC 59.938 36.000 8.83 0.00 43.51 4.70
671 686 6.626199 AAAATAAATTTTTAGTGCGCGGAG 57.374 33.333 8.83 0.00 36.65 4.63
692 707 2.223745 GGAGCTGTCCGGTGTTAAAAA 58.776 47.619 0.00 0.00 31.37 1.94
693 708 1.886886 GGAGCTGTCCGGTGTTAAAA 58.113 50.000 0.00 0.00 31.37 1.52
694 709 3.618171 GGAGCTGTCCGGTGTTAAA 57.382 52.632 0.00 0.00 31.37 1.52
703 718 0.036022 AACTTCTGCTGGAGCTGTCC 59.964 55.000 0.00 0.00 44.24 4.02
704 719 1.155042 CAACTTCTGCTGGAGCTGTC 58.845 55.000 0.00 0.00 42.66 3.51
705 720 0.471617 ACAACTTCTGCTGGAGCTGT 59.528 50.000 2.27 2.27 42.66 4.40
706 721 1.266175 CAACAACTTCTGCTGGAGCTG 59.734 52.381 0.00 0.00 42.66 4.24
707 722 1.602311 CAACAACTTCTGCTGGAGCT 58.398 50.000 0.00 0.00 42.66 4.09
708 723 0.039708 GCAACAACTTCTGCTGGAGC 60.040 55.000 0.00 0.00 42.50 4.70
709 724 0.236711 CGCAACAACTTCTGCTGGAG 59.763 55.000 0.00 0.00 36.38 3.86
710 725 1.785041 GCGCAACAACTTCTGCTGGA 61.785 55.000 0.30 0.00 36.38 3.86
711 726 1.370900 GCGCAACAACTTCTGCTGG 60.371 57.895 0.30 0.00 36.38 4.85
712 727 0.867746 TAGCGCAACAACTTCTGCTG 59.132 50.000 11.47 0.00 36.38 4.41
713 728 1.593196 TTAGCGCAACAACTTCTGCT 58.407 45.000 11.47 0.00 36.38 4.24
714 729 2.399396 TTTAGCGCAACAACTTCTGC 57.601 45.000 11.47 0.00 35.14 4.26
715 730 2.721090 GCTTTTAGCGCAACAACTTCTG 59.279 45.455 11.47 0.00 0.00 3.02
716 731 3.000082 GCTTTTAGCGCAACAACTTCT 58.000 42.857 11.47 0.00 0.00 2.85
728 743 1.344226 CGCGCCCAAAAGCTTTTAGC 61.344 55.000 23.44 24.64 42.84 3.09
729 744 1.344226 GCGCGCCCAAAAGCTTTTAG 61.344 55.000 23.44 16.56 0.00 1.85
730 745 1.372375 GCGCGCCCAAAAGCTTTTA 60.372 52.632 23.44 0.00 0.00 1.52
731 746 2.661537 GCGCGCCCAAAAGCTTTT 60.662 55.556 23.24 18.74 0.00 2.27
732 747 4.999939 CGCGCGCCCAAAAGCTTT 63.000 61.111 27.72 5.69 0.00 3.51
736 751 3.815569 TTCAACGCGCGCCCAAAAG 62.816 57.895 32.58 13.10 0.00 2.27
737 752 2.884087 TTTTCAACGCGCGCCCAAAA 62.884 50.000 32.58 26.06 0.00 2.44
738 753 2.884087 TTTTTCAACGCGCGCCCAAA 62.884 50.000 32.58 21.91 0.00 3.28
739 754 3.411418 TTTTTCAACGCGCGCCCAA 62.411 52.632 32.58 16.93 0.00 4.12
740 755 3.889044 TTTTTCAACGCGCGCCCA 61.889 55.556 32.58 10.88 0.00 5.36
741 756 3.391631 GTTTTTCAACGCGCGCCC 61.392 61.111 32.58 4.74 0.00 6.13
749 764 5.284660 CAGAAGCTATCATGCGTTTTTCAAC 59.715 40.000 0.00 0.00 38.13 3.18
750 765 5.393124 CAGAAGCTATCATGCGTTTTTCAA 58.607 37.500 0.00 0.00 38.13 2.69
751 766 4.142622 CCAGAAGCTATCATGCGTTTTTCA 60.143 41.667 0.00 0.00 38.13 2.69
752 767 4.346129 CCAGAAGCTATCATGCGTTTTTC 58.654 43.478 0.00 0.00 38.13 2.29
753 768 3.129287 CCCAGAAGCTATCATGCGTTTTT 59.871 43.478 0.00 0.00 38.13 1.94
754 769 2.684881 CCCAGAAGCTATCATGCGTTTT 59.315 45.455 0.00 0.00 38.13 2.43
755 770 2.292267 CCCAGAAGCTATCATGCGTTT 58.708 47.619 0.00 0.00 38.13 3.60
756 771 1.959042 CCCAGAAGCTATCATGCGTT 58.041 50.000 0.00 0.00 38.13 4.84
757 772 0.533755 GCCCAGAAGCTATCATGCGT 60.534 55.000 0.00 0.00 38.13 5.24
758 773 1.563435 CGCCCAGAAGCTATCATGCG 61.563 60.000 5.64 5.64 38.13 4.73
759 774 1.849976 GCGCCCAGAAGCTATCATGC 61.850 60.000 0.00 0.00 0.00 4.06
760 775 1.563435 CGCGCCCAGAAGCTATCATG 61.563 60.000 0.00 0.00 0.00 3.07
761 776 1.301244 CGCGCCCAGAAGCTATCAT 60.301 57.895 0.00 0.00 0.00 2.45
762 777 2.106938 CGCGCCCAGAAGCTATCA 59.893 61.111 0.00 0.00 0.00 2.15
763 778 3.341835 GCGCGCCCAGAAGCTATC 61.342 66.667 23.24 0.00 0.00 2.08
781 796 1.129811 CCCGTGATAGCGTTTTCCAAC 59.870 52.381 0.00 0.00 0.00 3.77
782 797 1.444836 CCCGTGATAGCGTTTTCCAA 58.555 50.000 0.00 0.00 0.00 3.53
783 798 1.022451 GCCCGTGATAGCGTTTTCCA 61.022 55.000 0.00 0.00 0.00 3.53
784 799 1.022451 TGCCCGTGATAGCGTTTTCC 61.022 55.000 0.00 0.00 0.00 3.13
785 800 0.373716 CTGCCCGTGATAGCGTTTTC 59.626 55.000 0.00 0.00 0.00 2.29
786 801 1.644786 GCTGCCCGTGATAGCGTTTT 61.645 55.000 0.00 0.00 0.00 2.43
787 802 2.106683 GCTGCCCGTGATAGCGTTT 61.107 57.895 0.00 0.00 0.00 3.60
788 803 2.511600 GCTGCCCGTGATAGCGTT 60.512 61.111 0.00 0.00 0.00 4.84
789 804 1.744320 TATGCTGCCCGTGATAGCGT 61.744 55.000 0.00 0.00 40.24 5.07
790 805 0.390340 ATATGCTGCCCGTGATAGCG 60.390 55.000 0.00 0.00 40.24 4.26
791 806 1.813513 AATATGCTGCCCGTGATAGC 58.186 50.000 0.00 0.00 37.93 2.97
792 807 3.402110 TCAAATATGCTGCCCGTGATAG 58.598 45.455 0.00 0.00 0.00 2.08
793 808 3.402110 CTCAAATATGCTGCCCGTGATA 58.598 45.455 0.00 0.00 0.00 2.15
794 809 2.224606 CTCAAATATGCTGCCCGTGAT 58.775 47.619 0.00 0.00 0.00 3.06
795 810 1.667236 CTCAAATATGCTGCCCGTGA 58.333 50.000 0.00 0.00 0.00 4.35
796 811 0.029834 GCTCAAATATGCTGCCCGTG 59.970 55.000 0.00 0.00 0.00 4.94
797 812 1.439353 CGCTCAAATATGCTGCCCGT 61.439 55.000 0.00 0.00 0.00 5.28
798 813 1.280746 CGCTCAAATATGCTGCCCG 59.719 57.895 0.00 0.00 0.00 6.13
799 814 1.008079 GCGCTCAAATATGCTGCCC 60.008 57.895 0.00 0.00 0.00 5.36
800 815 1.008079 GGCGCTCAAATATGCTGCC 60.008 57.895 7.64 0.00 39.82 4.85
801 816 1.369689 CGGCGCTCAAATATGCTGC 60.370 57.895 7.64 0.00 0.00 5.25
802 817 1.280746 CCGGCGCTCAAATATGCTG 59.719 57.895 7.64 0.00 0.00 4.41
803 818 0.748005 AACCGGCGCTCAAATATGCT 60.748 50.000 7.64 0.00 0.00 3.79
804 819 0.592247 CAACCGGCGCTCAAATATGC 60.592 55.000 7.64 0.00 0.00 3.14
805 820 0.592247 GCAACCGGCGCTCAAATATG 60.592 55.000 7.64 0.00 0.00 1.78
806 821 1.727467 GCAACCGGCGCTCAAATAT 59.273 52.632 7.64 0.00 0.00 1.28
807 822 3.183259 GCAACCGGCGCTCAAATA 58.817 55.556 7.64 0.00 0.00 1.40
823 838 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
824 839 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
825 840 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
826 841 1.768603 GTGCAAATTGTGAAGCGCG 59.231 52.632 0.00 0.00 0.00 6.86
827 842 1.608093 CCGTGCAAATTGTGAAGCGC 61.608 55.000 0.00 0.00 0.00 5.92
828 843 0.317770 ACCGTGCAAATTGTGAAGCG 60.318 50.000 0.00 0.00 0.00 4.68
829 844 1.001378 AGACCGTGCAAATTGTGAAGC 60.001 47.619 0.00 0.00 0.00 3.86
830 845 2.653890 CAGACCGTGCAAATTGTGAAG 58.346 47.619 0.00 0.00 0.00 3.02
831 846 2.772568 CAGACCGTGCAAATTGTGAA 57.227 45.000 0.00 0.00 0.00 3.18
842 857 1.136336 GCGTCTAAAAAGCAGACCGTG 60.136 52.381 0.00 0.00 39.43 4.94
843 858 1.145803 GCGTCTAAAAAGCAGACCGT 58.854 50.000 0.00 0.00 39.43 4.83
844 859 0.093026 CGCGTCTAAAAAGCAGACCG 59.907 55.000 0.00 0.00 39.43 4.79
845 860 1.136336 CACGCGTCTAAAAAGCAGACC 60.136 52.381 9.86 0.00 39.43 3.85
846 861 1.525619 ACACGCGTCTAAAAAGCAGAC 59.474 47.619 9.86 0.00 39.25 3.51
847 862 1.860676 ACACGCGTCTAAAAAGCAGA 58.139 45.000 9.86 0.00 32.01 4.26
848 863 2.663279 AACACGCGTCTAAAAAGCAG 57.337 45.000 9.86 0.00 32.01 4.24
849 864 3.408288 AAAACACGCGTCTAAAAAGCA 57.592 38.095 9.86 0.00 32.01 3.91
850 865 3.787105 TCAAAAACACGCGTCTAAAAAGC 59.213 39.130 9.86 0.00 0.00 3.51
851 866 4.086277 GCTCAAAAACACGCGTCTAAAAAG 60.086 41.667 9.86 3.03 0.00 2.27
852 867 3.787105 GCTCAAAAACACGCGTCTAAAAA 59.213 39.130 9.86 0.00 0.00 1.94
853 868 3.356145 GCTCAAAAACACGCGTCTAAAA 58.644 40.909 9.86 0.00 0.00 1.52
854 869 2.597971 CGCTCAAAAACACGCGTCTAAA 60.598 45.455 9.86 0.00 40.64 1.85
855 870 1.071107 CGCTCAAAAACACGCGTCTAA 60.071 47.619 9.86 0.00 40.64 2.10
856 871 0.505231 CGCTCAAAAACACGCGTCTA 59.495 50.000 9.86 0.00 40.64 2.59
857 872 1.275657 CGCTCAAAAACACGCGTCT 59.724 52.632 9.86 0.00 40.64 4.18
858 873 2.347168 GCGCTCAAAAACACGCGTC 61.347 57.895 9.86 0.00 46.56 5.19
859 874 2.351888 GCGCTCAAAAACACGCGT 60.352 55.556 5.58 5.58 46.56 6.01
862 877 2.010817 GCAGGCGCTCAAAAACACG 61.011 57.895 7.64 0.00 34.30 4.49
863 878 3.922175 GCAGGCGCTCAAAAACAC 58.078 55.556 7.64 0.00 34.30 3.32
879 894 3.181519 GCCGAGACTAACTTTGCTTTAGC 60.182 47.826 0.00 0.00 42.50 3.09
880 895 3.060895 CGCCGAGACTAACTTTGCTTTAG 59.939 47.826 0.00 0.00 33.46 1.85
881 896 2.991190 CGCCGAGACTAACTTTGCTTTA 59.009 45.455 0.00 0.00 0.00 1.85
882 897 1.798813 CGCCGAGACTAACTTTGCTTT 59.201 47.619 0.00 0.00 0.00 3.51
883 898 1.429463 CGCCGAGACTAACTTTGCTT 58.571 50.000 0.00 0.00 0.00 3.91
884 899 1.014564 GCGCCGAGACTAACTTTGCT 61.015 55.000 0.00 0.00 0.00 3.91
885 900 1.289109 TGCGCCGAGACTAACTTTGC 61.289 55.000 4.18 0.00 0.00 3.68
886 901 1.359848 ATGCGCCGAGACTAACTTTG 58.640 50.000 4.18 0.00 0.00 2.77
887 902 2.094762 AATGCGCCGAGACTAACTTT 57.905 45.000 4.18 0.00 0.00 2.66
888 903 2.953466 TAATGCGCCGAGACTAACTT 57.047 45.000 4.18 0.00 0.00 2.66
889 904 2.953466 TTAATGCGCCGAGACTAACT 57.047 45.000 4.18 0.00 0.00 2.24
890 905 4.086574 GTTTTTAATGCGCCGAGACTAAC 58.913 43.478 4.18 0.00 0.00 2.34
891 906 3.181528 CGTTTTTAATGCGCCGAGACTAA 60.182 43.478 4.18 0.00 0.00 2.24
892 907 2.346244 CGTTTTTAATGCGCCGAGACTA 59.654 45.455 4.18 0.00 0.00 2.59
893 908 1.127951 CGTTTTTAATGCGCCGAGACT 59.872 47.619 4.18 0.00 0.00 3.24
894 909 1.520368 CGTTTTTAATGCGCCGAGAC 58.480 50.000 4.18 0.00 0.00 3.36
895 910 0.179210 GCGTTTTTAATGCGCCGAGA 60.179 50.000 4.18 0.00 44.67 4.04
896 911 2.265446 GCGTTTTTAATGCGCCGAG 58.735 52.632 4.18 0.00 44.67 4.63
897 912 4.443784 GCGTTTTTAATGCGCCGA 57.556 50.000 4.18 0.00 44.67 5.54
902 917 3.838550 CGTCACTGTAGCGTTTTTAATGC 59.161 43.478 0.00 0.00 43.75 3.56
903 918 3.838550 GCGTCACTGTAGCGTTTTTAATG 59.161 43.478 5.37 0.00 0.00 1.90
904 919 3.495377 TGCGTCACTGTAGCGTTTTTAAT 59.505 39.130 5.37 0.00 0.00 1.40
905 920 2.864946 TGCGTCACTGTAGCGTTTTTAA 59.135 40.909 5.37 0.00 0.00 1.52
906 921 2.219216 GTGCGTCACTGTAGCGTTTTTA 59.781 45.455 3.20 0.00 0.00 1.52
907 922 1.004292 GTGCGTCACTGTAGCGTTTTT 60.004 47.619 3.20 0.00 0.00 1.94
908 923 0.580104 GTGCGTCACTGTAGCGTTTT 59.420 50.000 3.20 0.00 0.00 2.43
909 924 0.249322 AGTGCGTCACTGTAGCGTTT 60.249 50.000 10.97 0.00 43.63 3.60
910 925 0.594602 TAGTGCGTCACTGTAGCGTT 59.405 50.000 18.70 0.00 45.01 4.84
911 926 0.809385 ATAGTGCGTCACTGTAGCGT 59.191 50.000 18.70 0.00 45.01 5.07
912 927 2.750301 TATAGTGCGTCACTGTAGCG 57.250 50.000 18.70 0.00 45.01 4.26
913 928 4.360563 ACATTATAGTGCGTCACTGTAGC 58.639 43.478 18.70 0.00 45.01 3.58
914 929 6.033966 TGAACATTATAGTGCGTCACTGTAG 58.966 40.000 18.70 10.30 45.01 2.74
915 930 5.956642 TGAACATTATAGTGCGTCACTGTA 58.043 37.500 18.70 14.58 45.01 2.74
916 931 4.816392 TGAACATTATAGTGCGTCACTGT 58.184 39.130 18.70 15.40 45.01 3.55
917 932 5.973651 ATGAACATTATAGTGCGTCACTG 57.026 39.130 18.70 8.13 45.01 3.66
919 934 5.501715 CCAATGAACATTATAGTGCGTCAC 58.498 41.667 4.86 2.28 34.10 3.67
920 935 4.574421 CCCAATGAACATTATAGTGCGTCA 59.426 41.667 5.14 5.14 0.00 4.35
921 936 4.554723 GCCCAATGAACATTATAGTGCGTC 60.555 45.833 0.00 0.00 0.00 5.19
922 937 3.315191 GCCCAATGAACATTATAGTGCGT 59.685 43.478 0.00 0.00 0.00 5.24
923 938 3.606846 CGCCCAATGAACATTATAGTGCG 60.607 47.826 0.00 6.77 0.00 5.34
924 939 3.853307 GCGCCCAATGAACATTATAGTGC 60.853 47.826 0.00 6.57 0.00 4.40
925 940 3.606846 CGCGCCCAATGAACATTATAGTG 60.607 47.826 0.00 0.00 0.00 2.74
926 941 2.548057 CGCGCCCAATGAACATTATAGT 59.452 45.455 0.00 0.00 0.00 2.12
927 942 2.095768 CCGCGCCCAATGAACATTATAG 60.096 50.000 0.00 0.00 0.00 1.31
928 943 1.876799 CCGCGCCCAATGAACATTATA 59.123 47.619 0.00 0.00 0.00 0.98
929 944 0.667993 CCGCGCCCAATGAACATTAT 59.332 50.000 0.00 0.00 0.00 1.28
930 945 0.393132 TCCGCGCCCAATGAACATTA 60.393 50.000 0.00 0.00 0.00 1.90
931 946 1.656818 CTCCGCGCCCAATGAACATT 61.657 55.000 0.00 0.00 0.00 2.71
932 947 2.045438 TCCGCGCCCAATGAACAT 60.045 55.556 0.00 0.00 0.00 2.71
933 948 2.745884 CTCCGCGCCCAATGAACA 60.746 61.111 0.00 0.00 0.00 3.18
934 949 2.746277 ACTCCGCGCCCAATGAAC 60.746 61.111 0.00 0.00 0.00 3.18
935 950 2.745884 CACTCCGCGCCCAATGAA 60.746 61.111 0.00 0.00 0.00 2.57
936 951 3.545124 AACACTCCGCGCCCAATGA 62.545 57.895 0.00 0.00 0.00 2.57
937 952 3.039202 GAACACTCCGCGCCCAATG 62.039 63.158 0.00 0.00 0.00 2.82
938 953 2.746277 GAACACTCCGCGCCCAAT 60.746 61.111 0.00 0.00 0.00 3.16
939 954 3.469863 AAGAACACTCCGCGCCCAA 62.470 57.895 0.00 0.00 0.00 4.12
940 955 3.936203 AAGAACACTCCGCGCCCA 61.936 61.111 0.00 0.00 0.00 5.36
941 956 3.423154 CAAGAACACTCCGCGCCC 61.423 66.667 0.00 0.00 0.00 6.13
942 957 4.090057 GCAAGAACACTCCGCGCC 62.090 66.667 0.00 0.00 0.00 6.53
943 958 4.430423 CGCAAGAACACTCCGCGC 62.430 66.667 0.00 0.00 39.43 6.86
945 960 4.090057 GGCGCAAGAACACTCCGC 62.090 66.667 10.83 0.00 43.51 5.54
946 961 3.423154 GGGCGCAAGAACACTCCG 61.423 66.667 10.83 0.00 43.02 4.63
947 962 3.423154 CGGGCGCAAGAACACTCC 61.423 66.667 10.83 0.00 43.02 3.85
948 963 2.251642 AACGGGCGCAAGAACACTC 61.252 57.895 10.83 0.00 43.02 3.51
949 964 2.203153 AACGGGCGCAAGAACACT 60.203 55.556 10.83 0.00 43.02 3.55
950 965 2.051345 CAACGGGCGCAAGAACAC 60.051 61.111 10.83 0.00 43.02 3.32
951 966 3.283684 CCAACGGGCGCAAGAACA 61.284 61.111 10.83 0.00 43.02 3.18
952 967 2.966309 CTCCAACGGGCGCAAGAAC 61.966 63.158 10.83 0.00 43.02 3.01
953 968 2.463589 ATCTCCAACGGGCGCAAGAA 62.464 55.000 10.83 0.00 43.02 2.52
954 969 2.954684 ATCTCCAACGGGCGCAAGA 61.955 57.895 10.83 0.00 43.02 3.02
955 970 2.436646 ATCTCCAACGGGCGCAAG 60.437 61.111 10.83 4.46 43.44 4.01
956 971 2.745884 CATCTCCAACGGGCGCAA 60.746 61.111 10.83 0.00 0.00 4.85
959 974 2.892425 GAGCATCTCCAACGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
1022 1037 2.046217 GGGGAAGCAAGGACGACC 60.046 66.667 0.00 0.00 0.00 4.79
1316 1331 0.390209 AAAATGCTGATGCGGTTGCC 60.390 50.000 0.00 0.00 43.34 4.52
1339 1360 5.207768 CGTGAGACTCAAAATTTGGAGTTG 58.792 41.667 25.61 12.09 44.03 3.16
1340 1361 4.275936 CCGTGAGACTCAAAATTTGGAGTT 59.724 41.667 25.61 16.59 44.03 3.01
1341 1362 3.815401 CCGTGAGACTCAAAATTTGGAGT 59.185 43.478 25.24 25.24 46.51 3.85
1342 1363 3.815401 ACCGTGAGACTCAAAATTTGGAG 59.185 43.478 19.28 19.28 37.18 3.86
1343 1364 3.815809 ACCGTGAGACTCAAAATTTGGA 58.184 40.909 6.76 0.00 0.00 3.53
1345 1366 4.513692 TGGTACCGTGAGACTCAAAATTTG 59.486 41.667 6.76 0.00 0.00 2.32
1432 1462 2.997897 AGCTCTCCGTGGACCACC 60.998 66.667 19.11 3.64 0.00 4.61
1775 1805 3.390521 TTCAGGCGCCTGGACGAT 61.391 61.111 46.58 16.84 43.75 3.73
1958 1988 0.249615 TGCTCTCGTCCTATGCATGC 60.250 55.000 11.82 11.82 0.00 4.06
1962 1992 0.033228 ATGCTGCTCTCGTCCTATGC 59.967 55.000 0.00 0.00 0.00 3.14
1978 2009 3.918591 CACTTCACTTTGCTGATTGATGC 59.081 43.478 0.00 0.00 0.00 3.91
2003 2034 2.762472 CATGTCGACAAGATTTGCGTC 58.238 47.619 24.13 0.00 33.85 5.19
2037 2069 2.418368 TGAATGGCTCCGCTAAATGT 57.582 45.000 0.00 0.00 0.00 2.71
2043 2075 1.748122 CTGCTTGAATGGCTCCGCT 60.748 57.895 0.00 0.00 0.00 5.52
2052 2084 1.524621 CGCCGATCCCTGCTTGAAT 60.525 57.895 0.00 0.00 0.00 2.57
2137 2170 1.076777 CCCGCCCATGAACTCCATT 60.077 57.895 0.00 0.00 31.94 3.16
2140 2173 4.115199 AGCCCGCCCATGAACTCC 62.115 66.667 0.00 0.00 0.00 3.85
2315 2407 2.557805 GCGACACACCGAGTACGA 59.442 61.111 0.00 0.00 42.66 3.43
2316 2408 2.503375 GGCGACACACCGAGTACG 60.503 66.667 0.00 0.00 39.43 3.67
2317 2409 2.126189 GGGCGACACACCGAGTAC 60.126 66.667 0.00 0.00 0.00 2.73
2332 2424 2.843912 AATCTGGAAAGCCGCTGGGG 62.844 60.000 6.36 6.36 36.79 4.96
2350 2442 1.780309 ACCCTCAGTTTCACATGGGAA 59.220 47.619 6.21 6.21 38.08 3.97
2361 2453 3.330701 TGGAGATGCTTTTACCCTCAGTT 59.669 43.478 0.00 0.00 0.00 3.16
2362 2454 2.912956 TGGAGATGCTTTTACCCTCAGT 59.087 45.455 0.00 0.00 0.00 3.41
2363 2455 3.539604 CTGGAGATGCTTTTACCCTCAG 58.460 50.000 0.00 0.00 0.00 3.35
2364 2456 2.356125 GCTGGAGATGCTTTTACCCTCA 60.356 50.000 0.00 0.00 0.00 3.86
2365 2457 2.293170 GCTGGAGATGCTTTTACCCTC 58.707 52.381 0.00 0.00 0.00 4.30
2366 2458 1.064389 GGCTGGAGATGCTTTTACCCT 60.064 52.381 0.00 0.00 0.00 4.34
2367 2459 1.340991 TGGCTGGAGATGCTTTTACCC 60.341 52.381 0.00 0.00 0.00 3.69
2370 2462 1.737838 CGTGGCTGGAGATGCTTTTA 58.262 50.000 0.00 0.00 0.00 1.52
2371 2463 1.589716 GCGTGGCTGGAGATGCTTTT 61.590 55.000 0.00 0.00 0.00 2.27
2372 2464 2.042831 GCGTGGCTGGAGATGCTTT 61.043 57.895 0.00 0.00 0.00 3.51
2373 2465 2.437359 GCGTGGCTGGAGATGCTT 60.437 61.111 0.00 0.00 0.00 3.91
2374 2466 4.479993 GGCGTGGCTGGAGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
2402 2494 1.792006 ACGCTAAAGAAACACCGGAG 58.208 50.000 9.46 1.26 0.00 4.63
2403 2495 1.868498 CAACGCTAAAGAAACACCGGA 59.132 47.619 9.46 0.00 0.00 5.14
2404 2496 1.868498 TCAACGCTAAAGAAACACCGG 59.132 47.619 0.00 0.00 0.00 5.28
2405 2497 2.658224 CGTCAACGCTAAAGAAACACCG 60.658 50.000 0.00 0.00 0.00 4.94
2419 2511 2.348218 GGCCGATTATTAAGCGTCAACG 60.348 50.000 12.51 0.00 38.90 4.10
2420 2512 2.870411 AGGCCGATTATTAAGCGTCAAC 59.130 45.455 12.51 1.12 38.90 3.18
2421 2513 3.188159 AGGCCGATTATTAAGCGTCAA 57.812 42.857 12.51 0.00 38.90 3.18
2422 2514 2.902705 AGGCCGATTATTAAGCGTCA 57.097 45.000 12.51 0.00 38.90 4.35
2423 2515 4.031426 CGATTAGGCCGATTATTAAGCGTC 59.969 45.833 12.51 0.00 38.90 5.19
2424 2516 3.924686 CGATTAGGCCGATTATTAAGCGT 59.075 43.478 12.51 0.97 38.90 5.07
2426 2518 4.689345 ACACGATTAGGCCGATTATTAAGC 59.311 41.667 0.00 0.00 0.00 3.09
2429 2521 4.478699 CGACACGATTAGGCCGATTATTA 58.521 43.478 0.00 0.00 0.00 0.98
2430 2522 3.314553 CGACACGATTAGGCCGATTATT 58.685 45.455 0.00 0.00 0.00 1.40
2431 2523 2.925306 GCGACACGATTAGGCCGATTAT 60.925 50.000 0.00 0.00 0.00 1.28
2432 2524 1.601162 GCGACACGATTAGGCCGATTA 60.601 52.381 0.00 0.00 0.00 1.75
2433 2525 0.874607 GCGACACGATTAGGCCGATT 60.875 55.000 0.00 0.00 0.00 3.34
2434 2526 1.299926 GCGACACGATTAGGCCGAT 60.300 57.895 0.00 0.00 0.00 4.18
2436 2528 0.318360 TATGCGACACGATTAGGCCG 60.318 55.000 0.00 0.00 0.00 6.13
2437 2529 1.860676 TTATGCGACACGATTAGGCC 58.139 50.000 0.00 0.00 0.00 5.19
2438 2530 3.120649 GGATTTATGCGACACGATTAGGC 60.121 47.826 0.00 0.00 0.00 3.93
2439 2531 4.055360 TGGATTTATGCGACACGATTAGG 58.945 43.478 0.00 0.00 0.00 2.69
2440 2532 5.845985 ATGGATTTATGCGACACGATTAG 57.154 39.130 0.00 0.00 0.00 1.73
2444 2536 4.955925 AAAATGGATTTATGCGACACGA 57.044 36.364 0.00 0.00 0.00 4.35
2466 2558 6.365789 ACGTTAATTTCGATCTAAACCGACAA 59.634 34.615 9.14 0.00 34.26 3.18
2467 2559 5.863397 ACGTTAATTTCGATCTAAACCGACA 59.137 36.000 9.14 0.00 34.26 4.35
2468 2560 6.323197 ACGTTAATTTCGATCTAAACCGAC 57.677 37.500 9.14 0.00 34.26 4.79
2469 2561 5.227805 CGACGTTAATTTCGATCTAAACCGA 59.772 40.000 9.14 0.00 37.43 4.69
2470 2562 5.409571 CGACGTTAATTTCGATCTAAACCG 58.590 41.667 9.14 0.00 37.43 4.44
2471 2563 5.721238 CCGACGTTAATTTCGATCTAAACC 58.279 41.667 9.56 0.00 37.43 3.27
2472 2564 5.186053 GCCGACGTTAATTTCGATCTAAAC 58.814 41.667 9.56 0.00 37.43 2.01
2473 2565 4.027458 CGCCGACGTTAATTTCGATCTAAA 60.027 41.667 9.56 0.00 37.43 1.85
2474 2566 3.483196 CGCCGACGTTAATTTCGATCTAA 59.517 43.478 9.56 0.00 37.43 2.10
2475 2567 3.038017 CGCCGACGTTAATTTCGATCTA 58.962 45.455 9.56 0.00 37.43 1.98
2477 2569 1.071698 CCGCCGACGTTAATTTCGATC 60.072 52.381 9.56 0.00 37.43 3.69
2479 2571 0.109365 TCCGCCGACGTTAATTTCGA 60.109 50.000 9.56 0.00 37.43 3.71
2480 2572 0.024111 GTCCGCCGACGTTAATTTCG 59.976 55.000 0.00 2.51 37.70 3.46
2481 2573 0.371301 GGTCCGCCGACGTTAATTTC 59.629 55.000 0.00 0.00 40.17 2.17
2482 2574 1.020861 GGGTCCGCCGACGTTAATTT 61.021 55.000 0.00 0.00 40.17 1.82
2483 2575 1.448365 GGGTCCGCCGACGTTAATT 60.448 57.895 0.00 0.00 40.17 1.40
2484 2576 2.185093 GGGTCCGCCGACGTTAAT 59.815 61.111 0.00 0.00 40.17 1.40
2485 2577 3.285523 CTGGGTCCGCCGACGTTAA 62.286 63.158 0.00 0.00 40.17 2.01
2486 2578 3.751246 CTGGGTCCGCCGACGTTA 61.751 66.667 0.00 0.00 40.17 3.18
2493 2585 4.754667 GTTCGGTCTGGGTCCGCC 62.755 72.222 0.00 0.00 46.49 6.13
2494 2586 4.754667 GGTTCGGTCTGGGTCCGC 62.755 72.222 0.00 0.00 46.49 5.54
2498 2590 3.308705 GTCGGGTTCGGTCTGGGT 61.309 66.667 0.00 0.00 36.95 4.51
2499 2591 3.307906 TGTCGGGTTCGGTCTGGG 61.308 66.667 0.00 0.00 36.95 4.45
2500 2592 2.048503 GTGTCGGGTTCGGTCTGG 60.049 66.667 0.00 0.00 36.95 3.86
2501 2593 2.430244 CGTGTCGGGTTCGGTCTG 60.430 66.667 0.00 0.00 36.95 3.51
2502 2594 4.353437 GCGTGTCGGGTTCGGTCT 62.353 66.667 0.00 0.00 36.95 3.85
2503 2595 4.353437 AGCGTGTCGGGTTCGGTC 62.353 66.667 0.00 0.00 36.95 4.79
2504 2596 4.657824 CAGCGTGTCGGGTTCGGT 62.658 66.667 0.00 0.00 36.95 4.69
2528 2620 4.436998 GAGTGCCCCGGTGTCTCG 62.437 72.222 0.00 0.00 0.00 4.04
2529 2621 4.436998 CGAGTGCCCCGGTGTCTC 62.437 72.222 0.00 0.90 0.00 3.36
2532 2624 2.406002 AAAATCGAGTGCCCCGGTGT 62.406 55.000 0.00 0.00 0.00 4.16
2533 2625 1.674322 AAAATCGAGTGCCCCGGTG 60.674 57.895 0.00 0.00 0.00 4.94
2534 2626 1.674322 CAAAATCGAGTGCCCCGGT 60.674 57.895 0.00 0.00 0.00 5.28
2535 2627 2.406616 CCAAAATCGAGTGCCCCGG 61.407 63.158 0.00 0.00 0.00 5.73
2536 2628 3.051392 GCCAAAATCGAGTGCCCCG 62.051 63.158 0.00 0.00 0.00 5.73
2538 2630 0.179129 CATGCCAAAATCGAGTGCCC 60.179 55.000 0.00 0.00 0.00 5.36
2539 2631 0.810648 TCATGCCAAAATCGAGTGCC 59.189 50.000 0.00 0.00 0.00 5.01
2541 2633 4.424061 TCTTTCATGCCAAAATCGAGTG 57.576 40.909 0.00 0.00 0.00 3.51
2543 2635 5.051891 AGTTCTTTCATGCCAAAATCGAG 57.948 39.130 0.00 0.00 0.00 4.04
2544 2636 4.761739 AGAGTTCTTTCATGCCAAAATCGA 59.238 37.500 0.00 0.00 0.00 3.59
2546 2638 8.816640 TTTTAGAGTTCTTTCATGCCAAAATC 57.183 30.769 0.00 0.00 0.00 2.17
2547 2639 7.874528 CCTTTTAGAGTTCTTTCATGCCAAAAT 59.125 33.333 0.00 0.00 0.00 1.82
2548 2640 7.069331 TCCTTTTAGAGTTCTTTCATGCCAAAA 59.931 33.333 0.00 0.00 0.00 2.44
2552 2644 5.473504 TGTCCTTTTAGAGTTCTTTCATGCC 59.526 40.000 0.00 0.00 0.00 4.40
2554 2646 7.930217 TGTTGTCCTTTTAGAGTTCTTTCATG 58.070 34.615 0.00 0.00 0.00 3.07
2555 2647 8.571336 CATGTTGTCCTTTTAGAGTTCTTTCAT 58.429 33.333 0.00 0.00 0.00 2.57
2557 2649 7.857885 CACATGTTGTCCTTTTAGAGTTCTTTC 59.142 37.037 0.00 0.00 0.00 2.62
2561 2975 6.619801 ACACATGTTGTCCTTTTAGAGTTC 57.380 37.500 0.00 0.00 29.79 3.01
2564 2978 8.230486 GTCATTACACATGTTGTCCTTTTAGAG 58.770 37.037 0.00 0.00 39.91 2.43
2573 2987 8.543774 GCTTCTATAGTCATTACACATGTTGTC 58.456 37.037 0.00 0.00 39.91 3.18
2575 2989 8.654230 AGCTTCTATAGTCATTACACATGTTG 57.346 34.615 0.00 0.00 0.00 3.33
2576 2990 8.700051 AGAGCTTCTATAGTCATTACACATGTT 58.300 33.333 0.00 0.00 0.00 2.71
2577 2991 8.243961 AGAGCTTCTATAGTCATTACACATGT 57.756 34.615 0.00 0.00 0.00 3.21
2639 3591 9.555727 AATAGTGCACTCTAAAAGTAGTGAAAA 57.444 29.630 25.56 0.00 44.79 2.29
2676 3628 6.736581 ACAATAGATATAGAGGAGCCTAGCA 58.263 40.000 0.00 0.00 0.00 3.49
2677 3629 7.654022 AACAATAGATATAGAGGAGCCTAGC 57.346 40.000 0.00 0.00 0.00 3.42
2734 3687 7.765695 ATTGAAGTTCAAATGGAGTACATGT 57.234 32.000 21.57 2.69 40.12 3.21
2861 3815 8.245491 TGATGTTCTATTTGGATGATGTGTTTG 58.755 33.333 0.00 0.00 0.00 2.93
2862 3816 8.352137 TGATGTTCTATTTGGATGATGTGTTT 57.648 30.769 0.00 0.00 0.00 2.83
2918 3889 5.521544 TGTGTCATTGTGTGATGTTCATTG 58.478 37.500 0.00 0.00 39.48 2.82
2974 3945 0.398696 TGGCTTCAAGGGTAGCGAAA 59.601 50.000 0.00 0.00 38.22 3.46
2982 3964 2.611224 GCAAAGATGTTGGCTTCAAGGG 60.611 50.000 0.00 0.00 28.75 3.95
2986 3968 0.968405 GGGCAAAGATGTTGGCTTCA 59.032 50.000 11.72 0.00 43.51 3.02
2987 3969 0.968405 TGGGCAAAGATGTTGGCTTC 59.032 50.000 11.72 0.00 43.51 3.86
3010 3992 1.844687 GCAAGAGCCTTTGGGAGATT 58.155 50.000 0.62 0.00 33.58 2.40
3078 4060 4.140805 AGGCTGAGGTAGGAGAGTCATAAT 60.141 45.833 0.00 0.00 0.00 1.28
3079 4061 3.205507 AGGCTGAGGTAGGAGAGTCATAA 59.794 47.826 0.00 0.00 0.00 1.90
3089 4071 1.045911 GGAGGACAGGCTGAGGTAGG 61.046 65.000 23.66 0.00 0.00 3.18
3098 4080 1.270907 TCTTCTTCAGGAGGACAGGC 58.729 55.000 0.00 0.00 0.00 4.85
3099 4081 2.903135 ACTTCTTCTTCAGGAGGACAGG 59.097 50.000 0.00 0.00 31.02 4.00
3101 4083 3.850752 AGACTTCTTCTTCAGGAGGACA 58.149 45.455 0.00 0.00 31.02 4.02
3102 4084 5.681179 GCATAGACTTCTTCTTCAGGAGGAC 60.681 48.000 0.00 0.00 35.55 3.85
3103 4085 4.404073 GCATAGACTTCTTCTTCAGGAGGA 59.596 45.833 0.00 0.00 35.55 3.71
3104 4086 4.405358 AGCATAGACTTCTTCTTCAGGAGG 59.595 45.833 0.00 0.00 35.55 4.30
3105 4087 5.451798 GGAGCATAGACTTCTTCTTCAGGAG 60.452 48.000 0.00 0.00 35.55 3.69
3110 4092 5.590530 TGAGGAGCATAGACTTCTTCTTC 57.409 43.478 0.00 0.00 35.55 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.