Multiple sequence alignment - TraesCS2B01G248200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G248200 chr2B 100.000 3134 0 0 1 3134 254646391 254643258 0.000000e+00 5788.0
1 TraesCS2B01G248200 chr2B 85.246 122 16 2 2367 2486 688454676 688454797 1.180000e-24 124.0
2 TraesCS2B01G248200 chr2B 83.471 121 19 1 2367 2486 105846737 105846617 9.190000e-21 111.0
3 TraesCS2B01G248200 chr2D 95.068 1399 47 9 767 2149 197875577 197874185 0.000000e+00 2182.0
4 TraesCS2B01G248200 chr2D 89.575 518 25 6 39 528 197914225 197913709 5.700000e-177 630.0
5 TraesCS2B01G248200 chr2D 85.714 378 36 8 2531 2897 197874156 197873786 1.760000e-102 383.0
6 TraesCS2B01G248200 chr2A 94.789 1324 61 6 828 2149 214425353 214424036 0.000000e+00 2056.0
7 TraesCS2B01G248200 chr2A 88.462 546 38 12 11 542 214427086 214426552 1.230000e-178 636.0
8 TraesCS2B01G248200 chr2A 88.710 248 21 4 2541 2788 214424010 214423770 2.360000e-76 296.0
9 TraesCS2B01G248200 chr2A 88.710 124 7 3 767 889 214425467 214425350 9.060000e-31 145.0
10 TraesCS2B01G248200 chr1B 86.058 208 24 5 2147 2351 664778697 664778902 5.260000e-53 219.0
11 TraesCS2B01G248200 chr5B 88.430 121 13 1 2367 2486 681821047 681821167 9.060000e-31 145.0
12 TraesCS2B01G248200 chr5B 92.308 52 3 1 712 762 511409351 511409402 4.340000e-09 73.1
13 TraesCS2B01G248200 chr5B 81.333 75 11 3 681 753 411820411 411820338 1.210000e-04 58.4
14 TraesCS2B01G248200 chr4D 83.065 124 19 1 2367 2488 36351631 36351754 9.190000e-21 111.0
15 TraesCS2B01G248200 chr1A 83.471 121 19 1 2369 2488 28971813 28971693 9.190000e-21 111.0
16 TraesCS2B01G248200 chr7A 82.787 122 19 1 2369 2488 712364526 712364647 1.190000e-19 108.0
17 TraesCS2B01G248200 chr3D 82.787 122 19 2 2367 2486 177039391 177039270 1.190000e-19 108.0
18 TraesCS2B01G248200 chr3A 82.787 122 19 2 2370 2489 649812794 649812673 1.190000e-19 108.0
19 TraesCS2B01G248200 chr3A 74.497 149 31 6 614 756 24686554 24686407 1.210000e-04 58.4
20 TraesCS2B01G248200 chr4A 82.500 120 19 1 2369 2486 14265428 14265547 1.540000e-18 104.0
21 TraesCS2B01G248200 chr4A 87.755 49 4 1 707 753 692979288 692979240 4.370000e-04 56.5
22 TraesCS2B01G248200 chr5D 94.737 38 2 0 725 762 291164232 291164195 3.380000e-05 60.2
23 TraesCS2B01G248200 chr4B 94.737 38 1 1 722 758 145390394 145390357 1.210000e-04 58.4
24 TraesCS2B01G248200 chrUn 92.308 39 3 0 722 760 51348931 51348969 4.370000e-04 56.5
25 TraesCS2B01G248200 chrUn 92.308 39 3 0 722 760 51358146 51358184 4.370000e-04 56.5
26 TraesCS2B01G248200 chr3B 89.362 47 1 2 711 753 682880634 682880588 4.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G248200 chr2B 254643258 254646391 3133 True 5788.00 5788 100.00000 1 3134 1 chr2B.!!$R2 3133
1 TraesCS2B01G248200 chr2D 197873786 197875577 1791 True 1282.50 2182 90.39100 767 2897 2 chr2D.!!$R2 2130
2 TraesCS2B01G248200 chr2D 197913709 197914225 516 True 630.00 630 89.57500 39 528 1 chr2D.!!$R1 489
3 TraesCS2B01G248200 chr2A 214423770 214427086 3316 True 783.25 2056 90.16775 11 2788 4 chr2A.!!$R1 2777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 1216 0.024111 GTCCGCCGACGTTAATTTCG 59.976 55.0 0.0 2.51 37.7 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2311 3280 0.029834 CACGGGCAGCATATTTGAGC 59.97 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.831911 AGACTTCTTCTTCAGGAGGACAG 59.168 47.826 0.00 0.00 31.02 3.51
28 29 1.270907 TCTTCTTCAGGAGGACAGGC 58.729 55.000 0.00 0.00 0.00 4.85
37 39 1.045911 GGAGGACAGGCTGAGGTAGG 61.046 65.000 23.66 0.00 0.00 3.18
47 49 3.205507 AGGCTGAGGTAGGAGAGTCATAA 59.794 47.826 0.00 0.00 0.00 1.90
48 50 4.140805 AGGCTGAGGTAGGAGAGTCATAAT 60.141 45.833 0.00 0.00 0.00 1.28
116 118 1.844687 GCAAGAGCCTTTGGGAGATT 58.155 50.000 0.62 0.00 33.58 2.40
139 141 0.968405 TGGGCAAAGATGTTGGCTTC 59.032 50.000 11.72 0.00 43.51 3.86
140 142 0.968405 GGGCAAAGATGTTGGCTTCA 59.032 50.000 11.72 0.00 43.51 3.02
144 146 2.611224 GCAAAGATGTTGGCTTCAAGGG 60.611 50.000 0.00 0.00 28.75 3.95
152 165 0.398696 TGGCTTCAAGGGTAGCGAAA 59.601 50.000 0.00 0.00 38.22 3.46
208 221 5.521544 TGTGTCATTGTGTGATGTTCATTG 58.478 37.500 0.00 0.00 39.48 2.82
264 294 8.352137 TGATGTTCTATTTGGATGATGTGTTT 57.648 30.769 0.00 0.00 0.00 2.83
265 295 8.245491 TGATGTTCTATTTGGATGATGTGTTTG 58.755 33.333 0.00 0.00 0.00 2.93
392 423 7.765695 ATTGAAGTTCAAATGGAGTACATGT 57.234 32.000 21.57 2.69 40.12 3.21
449 481 7.654022 AACAATAGATATAGAGGAGCCTAGC 57.346 40.000 0.00 0.00 0.00 3.42
450 482 6.736581 ACAATAGATATAGAGGAGCCTAGCA 58.263 40.000 0.00 0.00 0.00 3.49
487 519 9.555727 AATAGTGCACTCTAAAAGTAGTGAAAA 57.444 29.630 25.56 0.00 44.79 2.29
549 581 8.243961 AGAGCTTCTATAGTCATTACACATGT 57.756 34.615 0.00 0.00 0.00 3.21
550 582 8.700051 AGAGCTTCTATAGTCATTACACATGTT 58.300 33.333 0.00 0.00 0.00 2.71
551 583 8.654230 AGCTTCTATAGTCATTACACATGTTG 57.346 34.615 0.00 0.00 0.00 3.33
553 585 8.543774 GCTTCTATAGTCATTACACATGTTGTC 58.456 37.037 0.00 0.00 39.91 3.18
562 1132 8.230486 GTCATTACACATGTTGTCCTTTTAGAG 58.770 37.037 0.00 0.00 39.91 2.43
565 1135 6.619801 ACACATGTTGTCCTTTTAGAGTTC 57.380 37.500 0.00 0.00 29.79 3.01
569 1139 7.857885 CACATGTTGTCCTTTTAGAGTTCTTTC 59.142 37.037 0.00 0.00 0.00 2.62
571 1141 8.571336 CATGTTGTCCTTTTAGAGTTCTTTCAT 58.429 33.333 0.00 0.00 0.00 2.57
572 1142 7.930217 TGTTGTCCTTTTAGAGTTCTTTCATG 58.070 34.615 0.00 0.00 0.00 3.07
574 1144 5.473504 TGTCCTTTTAGAGTTCTTTCATGCC 59.526 40.000 0.00 0.00 0.00 4.40
575 1145 5.473504 GTCCTTTTAGAGTTCTTTCATGCCA 59.526 40.000 0.00 0.00 0.00 4.92
576 1146 6.016276 GTCCTTTTAGAGTTCTTTCATGCCAA 60.016 38.462 0.00 0.00 0.00 4.52
577 1147 6.549364 TCCTTTTAGAGTTCTTTCATGCCAAA 59.451 34.615 0.00 0.00 0.00 3.28
580 1150 8.816640 TTTTAGAGTTCTTTCATGCCAAAATC 57.183 30.769 0.00 0.00 0.00 2.17
581 1151 5.051891 AGAGTTCTTTCATGCCAAAATCG 57.948 39.130 0.00 0.00 0.00 3.34
583 1153 5.051891 AGTTCTTTCATGCCAAAATCGAG 57.948 39.130 0.00 0.00 0.00 4.04
584 1154 4.520492 AGTTCTTTCATGCCAAAATCGAGT 59.480 37.500 0.00 0.00 0.00 4.18
585 1155 4.424061 TCTTTCATGCCAAAATCGAGTG 57.576 40.909 0.00 0.00 0.00 3.51
586 1156 2.634982 TTCATGCCAAAATCGAGTGC 57.365 45.000 0.00 0.00 0.00 4.40
587 1157 0.810648 TCATGCCAAAATCGAGTGCC 59.189 50.000 0.00 0.00 0.00 5.01
588 1158 0.179129 CATGCCAAAATCGAGTGCCC 60.179 55.000 0.00 0.00 0.00 5.36
589 1159 1.322538 ATGCCAAAATCGAGTGCCCC 61.323 55.000 0.00 0.00 0.00 5.80
590 1160 3.051392 GCCAAAATCGAGTGCCCCG 62.051 63.158 0.00 0.00 0.00 5.73
591 1161 2.406616 CCAAAATCGAGTGCCCCGG 61.407 63.158 0.00 0.00 0.00 5.73
592 1162 1.674322 CAAAATCGAGTGCCCCGGT 60.674 57.895 0.00 0.00 0.00 5.28
593 1163 1.674322 AAAATCGAGTGCCCCGGTG 60.674 57.895 0.00 0.00 0.00 4.94
594 1164 2.406002 AAAATCGAGTGCCCCGGTGT 62.406 55.000 0.00 0.00 0.00 4.16
595 1165 2.798148 AAATCGAGTGCCCCGGTGTC 62.798 60.000 0.00 0.00 0.00 3.67
597 1167 4.436998 CGAGTGCCCCGGTGTCTC 62.437 72.222 0.00 0.90 0.00 3.36
598 1168 4.436998 GAGTGCCCCGGTGTCTCG 62.437 72.222 0.00 0.00 0.00 4.04
622 1192 4.657824 CAGCGTGTCGGGTTCGGT 62.658 66.667 0.00 0.00 36.95 4.69
625 1195 2.430244 CGTGTCGGGTTCGGTCTG 60.430 66.667 0.00 0.00 36.95 3.51
627 1197 3.307906 TGTCGGGTTCGGTCTGGG 61.308 66.667 0.00 0.00 36.95 4.45
629 1199 2.993264 TCGGGTTCGGTCTGGGTC 60.993 66.667 0.00 0.00 36.95 4.46
630 1200 4.078516 CGGGTTCGGTCTGGGTCC 62.079 72.222 0.00 0.00 0.00 4.46
632 1202 4.754667 GGTTCGGTCTGGGTCCGC 62.755 72.222 0.00 0.00 46.49 5.54
633 1203 4.754667 GTTCGGTCTGGGTCCGCC 62.755 72.222 0.00 0.00 46.49 6.13
641 1211 3.285523 CTGGGTCCGCCGACGTTAA 62.286 63.158 0.00 0.00 40.17 2.01
643 1213 1.448365 GGGTCCGCCGACGTTAATT 60.448 57.895 0.00 0.00 40.17 1.40
644 1214 1.020861 GGGTCCGCCGACGTTAATTT 61.021 55.000 0.00 0.00 40.17 1.82
645 1215 0.371301 GGTCCGCCGACGTTAATTTC 59.629 55.000 0.00 0.00 40.17 2.17
646 1216 0.024111 GTCCGCCGACGTTAATTTCG 59.976 55.000 0.00 2.51 37.70 3.46
647 1217 0.109365 TCCGCCGACGTTAATTTCGA 60.109 50.000 9.56 0.00 37.43 3.71
648 1218 0.925466 CCGCCGACGTTAATTTCGAT 59.075 50.000 9.56 0.00 37.43 3.59
649 1219 1.071698 CCGCCGACGTTAATTTCGATC 60.072 52.381 9.56 0.00 37.43 3.69
650 1220 1.850441 CGCCGACGTTAATTTCGATCT 59.150 47.619 9.56 0.00 37.43 2.75
652 1222 3.483196 CGCCGACGTTAATTTCGATCTAA 59.517 43.478 9.56 0.00 37.43 2.10
653 1223 4.027458 CGCCGACGTTAATTTCGATCTAAA 60.027 41.667 9.56 0.00 37.43 1.85
654 1224 5.186053 GCCGACGTTAATTTCGATCTAAAC 58.814 41.667 9.56 0.00 37.43 2.01
656 1226 5.409571 CGACGTTAATTTCGATCTAAACCG 58.590 41.667 9.14 0.00 37.43 4.44
657 1227 5.227805 CGACGTTAATTTCGATCTAAACCGA 59.772 40.000 9.14 0.00 37.43 4.69
658 1228 6.323197 ACGTTAATTTCGATCTAAACCGAC 57.677 37.500 9.14 0.00 34.26 4.79
659 1229 5.863397 ACGTTAATTTCGATCTAAACCGACA 59.137 36.000 9.14 0.00 34.26 4.35
661 1231 7.095691 ACGTTAATTTCGATCTAAACCGACAAA 60.096 33.333 9.14 0.00 34.26 2.83
662 1232 7.741216 CGTTAATTTCGATCTAAACCGACAAAA 59.259 33.333 0.00 0.00 34.26 2.44
663 1233 9.384682 GTTAATTTCGATCTAAACCGACAAAAA 57.615 29.630 0.00 0.00 34.26 1.94
682 1252 4.955925 AAAATGGATTTATGCGACACGA 57.044 36.364 0.00 0.00 0.00 4.35
683 1253 5.499139 AAAATGGATTTATGCGACACGAT 57.501 34.783 0.00 0.00 0.00 3.73
684 1254 5.499139 AAATGGATTTATGCGACACGATT 57.501 34.783 0.00 0.00 0.00 3.34
685 1255 6.612247 AAATGGATTTATGCGACACGATTA 57.388 33.333 0.00 0.00 0.00 1.75
686 1256 5.845985 ATGGATTTATGCGACACGATTAG 57.154 39.130 0.00 0.00 0.00 1.73
687 1257 4.055360 TGGATTTATGCGACACGATTAGG 58.945 43.478 0.00 0.00 0.00 2.69
688 1258 3.120649 GGATTTATGCGACACGATTAGGC 60.121 47.826 0.00 0.00 0.00 3.93
689 1259 1.860676 TTATGCGACACGATTAGGCC 58.139 50.000 0.00 0.00 0.00 5.19
692 1262 1.299926 GCGACACGATTAGGCCGAT 60.300 57.895 0.00 0.00 0.00 4.18
693 1263 0.874607 GCGACACGATTAGGCCGATT 60.875 55.000 0.00 0.00 0.00 3.34
697 1267 4.478699 CGACACGATTAGGCCGATTATTA 58.521 43.478 0.00 0.00 0.00 0.98
700 1270 4.689345 ACACGATTAGGCCGATTATTAAGC 59.311 41.667 0.00 0.00 0.00 3.09
701 1271 3.924686 ACGATTAGGCCGATTATTAAGCG 59.075 43.478 14.08 14.08 39.81 4.68
702 1272 3.924686 CGATTAGGCCGATTATTAAGCGT 59.075 43.478 12.51 0.97 38.90 5.07
703 1273 4.031426 CGATTAGGCCGATTATTAAGCGTC 59.969 45.833 12.51 0.00 38.90 5.19
706 1276 2.870411 AGGCCGATTATTAAGCGTCAAC 59.130 45.455 12.51 1.12 38.90 3.18
707 1277 2.348218 GGCCGATTATTAAGCGTCAACG 60.348 50.000 12.51 0.00 38.90 4.10
721 1291 2.658224 CGTCAACGCTAAAGAAACACCG 60.658 50.000 0.00 0.00 0.00 4.94
722 1292 1.868498 TCAACGCTAAAGAAACACCGG 59.132 47.619 0.00 0.00 0.00 5.28
724 1294 1.792006 ACGCTAAAGAAACACCGGAG 58.208 50.000 9.46 1.26 0.00 4.63
750 1320 4.864334 GGGGCGTGGCTGGAGATG 62.864 72.222 0.00 0.00 0.00 2.90
752 1322 4.479993 GGCGTGGCTGGAGATGCT 62.480 66.667 0.00 0.00 0.00 3.79
754 1324 2.042831 GCGTGGCTGGAGATGCTTT 61.043 57.895 0.00 0.00 0.00 3.51
755 1325 1.589716 GCGTGGCTGGAGATGCTTTT 61.590 55.000 0.00 0.00 0.00 2.27
758 1328 1.745653 GTGGCTGGAGATGCTTTTACC 59.254 52.381 0.00 0.00 0.00 2.85
760 1330 1.064389 GGCTGGAGATGCTTTTACCCT 60.064 52.381 0.00 0.00 0.00 4.34
761 1331 2.293170 GCTGGAGATGCTTTTACCCTC 58.707 52.381 0.00 0.00 0.00 4.30
762 1332 2.356125 GCTGGAGATGCTTTTACCCTCA 60.356 50.000 0.00 0.00 0.00 3.86
763 1333 3.539604 CTGGAGATGCTTTTACCCTCAG 58.460 50.000 0.00 0.00 0.00 3.35
764 1334 2.912956 TGGAGATGCTTTTACCCTCAGT 59.087 45.455 0.00 0.00 0.00 3.41
776 1668 1.780309 ACCCTCAGTTTCACATGGGAA 59.220 47.619 6.21 6.21 38.08 3.97
794 1686 2.843912 AATCTGGAAAGCCGCTGGGG 62.844 60.000 6.36 6.36 36.79 4.96
806 1698 4.742201 CTGGGGCGACACACCGAG 62.742 72.222 0.00 0.00 40.38 4.63
808 1700 3.376078 GGGGCGACACACCGAGTA 61.376 66.667 0.00 0.00 0.00 2.59
809 1701 2.126189 GGGCGACACACCGAGTAC 60.126 66.667 0.00 0.00 0.00 2.73
810 1702 2.503375 GGCGACACACCGAGTACG 60.503 66.667 0.00 0.00 39.43 3.67
811 1703 2.557805 GCGACACACCGAGTACGA 59.442 61.111 0.00 0.00 42.66 3.43
986 1937 4.115199 AGCCCGCCCATGAACTCC 62.115 66.667 0.00 0.00 0.00 3.85
989 1940 1.076777 CCCGCCCATGAACTCCATT 60.077 57.895 0.00 0.00 31.94 3.16
1074 2026 1.524621 CGCCGATCCCTGCTTGAAT 60.525 57.895 0.00 0.00 0.00 2.57
1083 2035 1.748122 CTGCTTGAATGGCTCCGCT 60.748 57.895 0.00 0.00 0.00 5.52
1089 2041 2.418368 TGAATGGCTCCGCTAAATGT 57.582 45.000 0.00 0.00 0.00 2.71
1123 2076 2.762472 CATGTCGACAAGATTTGCGTC 58.238 47.619 24.13 0.00 33.85 5.19
1148 2101 3.918591 CACTTCACTTTGCTGATTGATGC 59.081 43.478 0.00 0.00 0.00 3.91
1164 2118 0.033228 ATGCTGCTCTCGTCCTATGC 59.967 55.000 0.00 0.00 0.00 3.14
1168 2122 0.249615 TGCTCTCGTCCTATGCATGC 60.250 55.000 11.82 11.82 0.00 4.06
1351 2305 3.390521 TTCAGGCGCCTGGACGAT 61.391 61.111 46.58 16.84 43.75 3.73
1694 2648 2.997897 AGCTCTCCGTGGACCACC 60.998 66.667 19.11 3.64 0.00 4.61
1781 2735 4.513692 TGGTACCGTGAGACTCAAAATTTG 59.486 41.667 6.76 0.00 0.00 2.32
1783 2737 3.815809 ACCGTGAGACTCAAAATTTGGA 58.184 40.909 6.76 0.00 0.00 3.53
1784 2738 3.815401 ACCGTGAGACTCAAAATTTGGAG 59.185 43.478 19.28 19.28 37.18 3.86
1785 2739 3.815401 CCGTGAGACTCAAAATTTGGAGT 59.185 43.478 25.24 25.24 46.51 3.85
1787 2741 5.207768 CGTGAGACTCAAAATTTGGAGTTG 58.792 41.667 25.61 12.09 44.03 3.16
1810 2779 0.390209 AAAATGCTGATGCGGTTGCC 60.390 50.000 0.00 0.00 43.34 4.52
2104 3073 2.046217 GGGGAAGCAAGGACGACC 60.046 66.667 0.00 0.00 0.00 4.79
2167 3136 2.892425 GAGCATCTCCAACGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
2170 3139 2.745884 CATCTCCAACGGGCGCAA 60.746 61.111 10.83 0.00 0.00 4.85
2171 3140 2.436646 ATCTCCAACGGGCGCAAG 60.437 61.111 10.83 4.46 43.44 4.01
2172 3141 2.954684 ATCTCCAACGGGCGCAAGA 61.955 57.895 10.83 0.00 43.02 3.02
2173 3142 2.463589 ATCTCCAACGGGCGCAAGAA 62.464 55.000 10.83 0.00 43.02 2.52
2174 3143 2.966309 CTCCAACGGGCGCAAGAAC 61.966 63.158 10.83 0.00 43.02 3.01
2175 3144 3.283684 CCAACGGGCGCAAGAACA 61.284 61.111 10.83 0.00 43.02 3.18
2176 3145 2.051345 CAACGGGCGCAAGAACAC 60.051 61.111 10.83 0.00 43.02 3.32
2177 3146 2.203153 AACGGGCGCAAGAACACT 60.203 55.556 10.83 0.00 43.02 3.55
2178 3147 2.251642 AACGGGCGCAAGAACACTC 61.252 57.895 10.83 0.00 43.02 3.51
2179 3148 3.423154 CGGGCGCAAGAACACTCC 61.423 66.667 10.83 0.00 43.02 3.85
2180 3149 3.423154 GGGCGCAAGAACACTCCG 61.423 66.667 10.83 0.00 43.02 4.63
2181 3150 4.090057 GGCGCAAGAACACTCCGC 62.090 66.667 10.83 0.00 43.51 5.54
2183 3152 4.430423 CGCAAGAACACTCCGCGC 62.430 66.667 0.00 0.00 39.43 6.86
2184 3153 4.090057 GCAAGAACACTCCGCGCC 62.090 66.667 0.00 0.00 0.00 6.53
2185 3154 3.423154 CAAGAACACTCCGCGCCC 61.423 66.667 0.00 0.00 0.00 6.13
2186 3155 3.936203 AAGAACACTCCGCGCCCA 61.936 61.111 0.00 0.00 0.00 5.36
2187 3156 3.469863 AAGAACACTCCGCGCCCAA 62.470 57.895 0.00 0.00 0.00 4.12
2188 3157 2.746277 GAACACTCCGCGCCCAAT 60.746 61.111 0.00 0.00 0.00 3.16
2189 3158 3.039202 GAACACTCCGCGCCCAATG 62.039 63.158 0.00 0.00 0.00 2.82
2190 3159 3.545124 AACACTCCGCGCCCAATGA 62.545 57.895 0.00 0.00 0.00 2.57
2191 3160 2.745884 CACTCCGCGCCCAATGAA 60.746 61.111 0.00 0.00 0.00 2.57
2192 3161 2.746277 ACTCCGCGCCCAATGAAC 60.746 61.111 0.00 0.00 0.00 3.18
2193 3162 2.745884 CTCCGCGCCCAATGAACA 60.746 61.111 0.00 0.00 0.00 3.18
2194 3163 2.045438 TCCGCGCCCAATGAACAT 60.045 55.556 0.00 0.00 0.00 2.71
2195 3164 1.656818 CTCCGCGCCCAATGAACATT 61.657 55.000 0.00 0.00 0.00 2.71
2196 3165 0.393132 TCCGCGCCCAATGAACATTA 60.393 50.000 0.00 0.00 0.00 1.90
2197 3166 0.667993 CCGCGCCCAATGAACATTAT 59.332 50.000 0.00 0.00 0.00 1.28
2198 3167 1.876799 CCGCGCCCAATGAACATTATA 59.123 47.619 0.00 0.00 0.00 0.98
2199 3168 2.095768 CCGCGCCCAATGAACATTATAG 60.096 50.000 0.00 0.00 0.00 1.31
2200 3169 2.548057 CGCGCCCAATGAACATTATAGT 59.452 45.455 0.00 0.00 0.00 2.12
2201 3170 3.606846 CGCGCCCAATGAACATTATAGTG 60.607 47.826 0.00 0.00 0.00 2.74
2202 3171 3.853307 GCGCCCAATGAACATTATAGTGC 60.853 47.826 0.00 6.57 0.00 4.40
2203 3172 3.606846 CGCCCAATGAACATTATAGTGCG 60.607 47.826 0.00 6.77 0.00 5.34
2204 3173 3.315191 GCCCAATGAACATTATAGTGCGT 59.685 43.478 0.00 0.00 0.00 5.24
2205 3174 4.554723 GCCCAATGAACATTATAGTGCGTC 60.555 45.833 0.00 0.00 0.00 5.19
2206 3175 4.574421 CCCAATGAACATTATAGTGCGTCA 59.426 41.667 5.14 5.14 0.00 4.35
2207 3176 5.501715 CCAATGAACATTATAGTGCGTCAC 58.498 41.667 4.86 2.28 34.10 3.67
2209 3178 5.973651 ATGAACATTATAGTGCGTCACTG 57.026 39.130 18.70 8.13 45.01 3.66
2210 3179 4.816392 TGAACATTATAGTGCGTCACTGT 58.184 39.130 18.70 15.40 45.01 3.55
2211 3180 5.956642 TGAACATTATAGTGCGTCACTGTA 58.043 37.500 18.70 14.58 45.01 2.74
2212 3181 6.033966 TGAACATTATAGTGCGTCACTGTAG 58.966 40.000 18.70 10.30 45.01 2.74
2213 3182 4.360563 ACATTATAGTGCGTCACTGTAGC 58.639 43.478 18.70 0.00 45.01 3.58
2214 3183 2.750301 TATAGTGCGTCACTGTAGCG 57.250 50.000 18.70 0.00 45.01 4.26
2215 3184 0.809385 ATAGTGCGTCACTGTAGCGT 59.191 50.000 18.70 0.00 45.01 5.07
2216 3185 0.594602 TAGTGCGTCACTGTAGCGTT 59.405 50.000 18.70 0.00 45.01 4.84
2217 3186 0.249322 AGTGCGTCACTGTAGCGTTT 60.249 50.000 10.97 0.00 43.63 3.60
2218 3187 0.580104 GTGCGTCACTGTAGCGTTTT 59.420 50.000 3.20 0.00 0.00 2.43
2219 3188 1.004292 GTGCGTCACTGTAGCGTTTTT 60.004 47.619 3.20 0.00 0.00 1.94
2220 3189 2.219216 GTGCGTCACTGTAGCGTTTTTA 59.781 45.455 3.20 0.00 0.00 1.52
2221 3190 2.864946 TGCGTCACTGTAGCGTTTTTAA 59.135 40.909 5.37 0.00 0.00 1.52
2222 3191 3.495377 TGCGTCACTGTAGCGTTTTTAAT 59.505 39.130 5.37 0.00 0.00 1.40
2223 3192 3.838550 GCGTCACTGTAGCGTTTTTAATG 59.161 43.478 5.37 0.00 0.00 1.90
2224 3193 3.838550 CGTCACTGTAGCGTTTTTAATGC 59.161 43.478 0.00 0.00 43.75 3.56
2229 3198 4.443784 GCGTTTTTAATGCGCCGA 57.556 50.000 4.18 0.00 44.67 5.54
2230 3199 2.265446 GCGTTTTTAATGCGCCGAG 58.735 52.632 4.18 0.00 44.67 4.63
2231 3200 0.179210 GCGTTTTTAATGCGCCGAGA 60.179 50.000 4.18 0.00 44.67 4.04
2232 3201 1.520368 CGTTTTTAATGCGCCGAGAC 58.480 50.000 4.18 0.00 0.00 3.36
2233 3202 1.127951 CGTTTTTAATGCGCCGAGACT 59.872 47.619 4.18 0.00 0.00 3.24
2234 3203 2.346244 CGTTTTTAATGCGCCGAGACTA 59.654 45.455 4.18 0.00 0.00 2.59
2235 3204 3.181528 CGTTTTTAATGCGCCGAGACTAA 60.182 43.478 4.18 0.00 0.00 2.24
2236 3205 4.086574 GTTTTTAATGCGCCGAGACTAAC 58.913 43.478 4.18 0.00 0.00 2.34
2237 3206 2.953466 TTAATGCGCCGAGACTAACT 57.047 45.000 4.18 0.00 0.00 2.24
2238 3207 2.953466 TAATGCGCCGAGACTAACTT 57.047 45.000 4.18 0.00 0.00 2.66
2239 3208 2.094762 AATGCGCCGAGACTAACTTT 57.905 45.000 4.18 0.00 0.00 2.66
2240 3209 1.359848 ATGCGCCGAGACTAACTTTG 58.640 50.000 4.18 0.00 0.00 2.77
2241 3210 1.289109 TGCGCCGAGACTAACTTTGC 61.289 55.000 4.18 0.00 0.00 3.68
2242 3211 1.014564 GCGCCGAGACTAACTTTGCT 61.015 55.000 0.00 0.00 0.00 3.91
2243 3212 1.429463 CGCCGAGACTAACTTTGCTT 58.571 50.000 0.00 0.00 0.00 3.91
2244 3213 1.798813 CGCCGAGACTAACTTTGCTTT 59.201 47.619 0.00 0.00 0.00 3.51
2245 3214 2.991190 CGCCGAGACTAACTTTGCTTTA 59.009 45.455 0.00 0.00 0.00 1.85
2246 3215 3.060895 CGCCGAGACTAACTTTGCTTTAG 59.939 47.826 0.00 0.00 33.46 1.85
2247 3216 3.181519 GCCGAGACTAACTTTGCTTTAGC 60.182 47.826 0.00 0.00 42.50 3.09
2263 3232 3.922175 GCAGGCGCTCAAAAACAC 58.078 55.556 7.64 0.00 34.30 3.32
2264 3233 2.010817 GCAGGCGCTCAAAAACACG 61.011 57.895 7.64 0.00 34.30 4.49
2267 3236 2.351888 GCGCTCAAAAACACGCGT 60.352 55.556 5.58 5.58 46.56 6.01
2268 3237 2.347168 GCGCTCAAAAACACGCGTC 61.347 57.895 9.86 0.00 46.56 5.19
2269 3238 1.275657 CGCTCAAAAACACGCGTCT 59.724 52.632 9.86 0.00 40.64 4.18
2270 3239 0.505231 CGCTCAAAAACACGCGTCTA 59.495 50.000 9.86 0.00 40.64 2.59
2271 3240 1.071107 CGCTCAAAAACACGCGTCTAA 60.071 47.619 9.86 0.00 40.64 2.10
2272 3241 2.597971 CGCTCAAAAACACGCGTCTAAA 60.598 45.455 9.86 0.00 40.64 1.85
2273 3242 3.356145 GCTCAAAAACACGCGTCTAAAA 58.644 40.909 9.86 0.00 0.00 1.52
2274 3243 3.787105 GCTCAAAAACACGCGTCTAAAAA 59.213 39.130 9.86 0.00 0.00 1.94
2275 3244 4.086277 GCTCAAAAACACGCGTCTAAAAAG 60.086 41.667 9.86 3.03 0.00 2.27
2276 3245 3.787105 TCAAAAACACGCGTCTAAAAAGC 59.213 39.130 9.86 0.00 0.00 3.51
2277 3246 3.408288 AAAACACGCGTCTAAAAAGCA 57.592 38.095 9.86 0.00 32.01 3.91
2278 3247 2.663279 AACACGCGTCTAAAAAGCAG 57.337 45.000 9.86 0.00 32.01 4.24
2279 3248 1.860676 ACACGCGTCTAAAAAGCAGA 58.139 45.000 9.86 0.00 32.01 4.26
2280 3249 1.525619 ACACGCGTCTAAAAAGCAGAC 59.474 47.619 9.86 0.00 39.25 3.51
2281 3250 1.136336 CACGCGTCTAAAAAGCAGACC 60.136 52.381 9.86 0.00 39.43 3.85
2282 3251 0.093026 CGCGTCTAAAAAGCAGACCG 59.907 55.000 0.00 0.00 39.43 4.79
2283 3252 1.145803 GCGTCTAAAAAGCAGACCGT 58.854 50.000 0.00 0.00 39.43 4.83
2284 3253 1.136336 GCGTCTAAAAAGCAGACCGTG 60.136 52.381 0.00 0.00 39.43 4.94
2295 3264 2.772568 CAGACCGTGCAAATTGTGAA 57.227 45.000 0.00 0.00 0.00 3.18
2296 3265 2.653890 CAGACCGTGCAAATTGTGAAG 58.346 47.619 0.00 0.00 0.00 3.02
2297 3266 1.001378 AGACCGTGCAAATTGTGAAGC 60.001 47.619 0.00 0.00 0.00 3.86
2298 3267 0.317770 ACCGTGCAAATTGTGAAGCG 60.318 50.000 0.00 0.00 0.00 4.68
2299 3268 1.608093 CCGTGCAAATTGTGAAGCGC 61.608 55.000 0.00 0.00 0.00 5.92
2300 3269 1.768603 GTGCAAATTGTGAAGCGCG 59.231 52.632 0.00 0.00 0.00 6.86
2301 3270 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
2302 3271 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
2303 3272 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
2319 3288 3.183259 GCAACCGGCGCTCAAATA 58.817 55.556 7.64 0.00 0.00 1.40
2320 3289 1.727467 GCAACCGGCGCTCAAATAT 59.273 52.632 7.64 0.00 0.00 1.28
2321 3290 0.592247 GCAACCGGCGCTCAAATATG 60.592 55.000 7.64 0.00 0.00 1.78
2322 3291 0.592247 CAACCGGCGCTCAAATATGC 60.592 55.000 7.64 0.00 0.00 3.14
2323 3292 0.748005 AACCGGCGCTCAAATATGCT 60.748 50.000 7.64 0.00 0.00 3.79
2324 3293 1.280746 CCGGCGCTCAAATATGCTG 59.719 57.895 7.64 0.00 0.00 4.41
2325 3294 1.369689 CGGCGCTCAAATATGCTGC 60.370 57.895 7.64 0.00 0.00 5.25
2326 3295 1.008079 GGCGCTCAAATATGCTGCC 60.008 57.895 7.64 0.00 39.82 4.85
2327 3296 1.008079 GCGCTCAAATATGCTGCCC 60.008 57.895 0.00 0.00 0.00 5.36
2328 3297 1.280746 CGCTCAAATATGCTGCCCG 59.719 57.895 0.00 0.00 0.00 6.13
2329 3298 1.439353 CGCTCAAATATGCTGCCCGT 61.439 55.000 0.00 0.00 0.00 5.28
2330 3299 0.029834 GCTCAAATATGCTGCCCGTG 59.970 55.000 0.00 0.00 0.00 4.94
2331 3300 1.667236 CTCAAATATGCTGCCCGTGA 58.333 50.000 0.00 0.00 0.00 4.35
2332 3301 2.224606 CTCAAATATGCTGCCCGTGAT 58.775 47.619 0.00 0.00 0.00 3.06
2333 3302 3.402110 CTCAAATATGCTGCCCGTGATA 58.598 45.455 0.00 0.00 0.00 2.15
2334 3303 3.402110 TCAAATATGCTGCCCGTGATAG 58.598 45.455 0.00 0.00 0.00 2.08
2335 3304 1.813513 AATATGCTGCCCGTGATAGC 58.186 50.000 0.00 0.00 37.93 2.97
2336 3305 0.390340 ATATGCTGCCCGTGATAGCG 60.390 55.000 0.00 0.00 40.24 4.26
2337 3306 1.744320 TATGCTGCCCGTGATAGCGT 61.744 55.000 0.00 0.00 40.24 5.07
2338 3307 2.511600 GCTGCCCGTGATAGCGTT 60.512 61.111 0.00 0.00 0.00 4.84
2339 3308 2.106683 GCTGCCCGTGATAGCGTTT 61.107 57.895 0.00 0.00 0.00 3.60
2340 3309 1.644786 GCTGCCCGTGATAGCGTTTT 61.645 55.000 0.00 0.00 0.00 2.43
2341 3310 0.373716 CTGCCCGTGATAGCGTTTTC 59.626 55.000 0.00 0.00 0.00 2.29
2342 3311 1.022451 TGCCCGTGATAGCGTTTTCC 61.022 55.000 0.00 0.00 0.00 3.13
2343 3312 1.022451 GCCCGTGATAGCGTTTTCCA 61.022 55.000 0.00 0.00 0.00 3.53
2344 3313 1.444836 CCCGTGATAGCGTTTTCCAA 58.555 50.000 0.00 0.00 0.00 3.53
2345 3314 1.129811 CCCGTGATAGCGTTTTCCAAC 59.870 52.381 0.00 0.00 0.00 3.77
2363 3332 3.341835 GCGCGCCCAGAAGCTATC 61.342 66.667 23.24 0.00 0.00 2.08
2364 3333 2.106938 CGCGCCCAGAAGCTATCA 59.893 61.111 0.00 0.00 0.00 2.15
2365 3334 1.301244 CGCGCCCAGAAGCTATCAT 60.301 57.895 0.00 0.00 0.00 2.45
2366 3335 1.563435 CGCGCCCAGAAGCTATCATG 61.563 60.000 0.00 0.00 0.00 3.07
2367 3336 1.849976 GCGCCCAGAAGCTATCATGC 61.850 60.000 0.00 0.00 0.00 4.06
2368 3337 1.563435 CGCCCAGAAGCTATCATGCG 61.563 60.000 5.64 5.64 38.13 4.73
2369 3338 0.533755 GCCCAGAAGCTATCATGCGT 60.534 55.000 0.00 0.00 38.13 5.24
2370 3339 1.959042 CCCAGAAGCTATCATGCGTT 58.041 50.000 0.00 0.00 38.13 4.84
2371 3340 2.292267 CCCAGAAGCTATCATGCGTTT 58.708 47.619 0.00 0.00 38.13 3.60
2372 3341 2.684881 CCCAGAAGCTATCATGCGTTTT 59.315 45.455 0.00 0.00 38.13 2.43
2373 3342 3.129287 CCCAGAAGCTATCATGCGTTTTT 59.871 43.478 0.00 0.00 38.13 1.94
2374 3343 4.346129 CCAGAAGCTATCATGCGTTTTTC 58.654 43.478 0.00 0.00 38.13 2.29
2375 3344 4.142622 CCAGAAGCTATCATGCGTTTTTCA 60.143 41.667 0.00 0.00 38.13 2.69
2376 3345 5.393124 CAGAAGCTATCATGCGTTTTTCAA 58.607 37.500 0.00 0.00 38.13 2.69
2377 3346 5.284660 CAGAAGCTATCATGCGTTTTTCAAC 59.715 40.000 0.00 0.00 38.13 3.18
2385 3354 3.391631 GTTTTTCAACGCGCGCCC 61.392 61.111 32.58 4.74 0.00 6.13
2386 3355 3.889044 TTTTTCAACGCGCGCCCA 61.889 55.556 32.58 10.88 0.00 5.36
2387 3356 3.411418 TTTTTCAACGCGCGCCCAA 62.411 52.632 32.58 16.93 0.00 4.12
2388 3357 2.884087 TTTTTCAACGCGCGCCCAAA 62.884 50.000 32.58 21.91 0.00 3.28
2389 3358 2.884087 TTTTCAACGCGCGCCCAAAA 62.884 50.000 32.58 26.06 0.00 2.44
2390 3359 3.815569 TTCAACGCGCGCCCAAAAG 62.816 57.895 32.58 13.10 0.00 2.27
2394 3363 4.999939 CGCGCGCCCAAAAGCTTT 63.000 61.111 27.72 5.69 0.00 3.51
2395 3364 2.661537 GCGCGCCCAAAAGCTTTT 60.662 55.556 23.24 18.74 0.00 2.27
2396 3365 1.372375 GCGCGCCCAAAAGCTTTTA 60.372 52.632 23.44 0.00 0.00 1.52
2397 3366 1.344226 GCGCGCCCAAAAGCTTTTAG 61.344 55.000 23.44 16.56 0.00 1.85
2398 3367 1.344226 CGCGCCCAAAAGCTTTTAGC 61.344 55.000 23.44 24.64 42.84 3.09
2410 3379 3.000082 GCTTTTAGCGCAACAACTTCT 58.000 42.857 11.47 0.00 0.00 2.85
2411 3380 2.721090 GCTTTTAGCGCAACAACTTCTG 59.279 45.455 11.47 0.00 0.00 3.02
2412 3381 2.399396 TTTAGCGCAACAACTTCTGC 57.601 45.000 11.47 0.00 35.14 4.26
2413 3382 1.593196 TTAGCGCAACAACTTCTGCT 58.407 45.000 11.47 0.00 36.38 4.24
2414 3383 0.867746 TAGCGCAACAACTTCTGCTG 59.132 50.000 11.47 0.00 36.38 4.41
2415 3384 1.370900 GCGCAACAACTTCTGCTGG 60.371 57.895 0.30 0.00 36.38 4.85
2416 3385 1.785041 GCGCAACAACTTCTGCTGGA 61.785 55.000 0.30 0.00 36.38 3.86
2417 3386 0.236711 CGCAACAACTTCTGCTGGAG 59.763 55.000 0.00 0.00 36.38 3.86
2418 3387 0.039708 GCAACAACTTCTGCTGGAGC 60.040 55.000 0.00 0.00 42.50 4.70
2419 3388 1.602311 CAACAACTTCTGCTGGAGCT 58.398 50.000 0.00 0.00 42.66 4.09
2420 3389 1.266175 CAACAACTTCTGCTGGAGCTG 59.734 52.381 0.00 0.00 42.66 4.24
2421 3390 0.471617 ACAACTTCTGCTGGAGCTGT 59.528 50.000 2.27 2.27 42.66 4.40
2422 3391 1.155042 CAACTTCTGCTGGAGCTGTC 58.845 55.000 0.00 0.00 42.66 3.51
2423 3392 0.036022 AACTTCTGCTGGAGCTGTCC 59.964 55.000 0.00 0.00 44.24 4.02
2432 3401 3.618171 GGAGCTGTCCGGTGTTAAA 57.382 52.632 0.00 0.00 31.37 1.52
2433 3402 1.886886 GGAGCTGTCCGGTGTTAAAA 58.113 50.000 0.00 0.00 31.37 1.52
2434 3403 2.223745 GGAGCTGTCCGGTGTTAAAAA 58.776 47.619 0.00 0.00 31.37 1.94
2455 3424 6.626199 AAAATAAATTTTTAGTGCGCGGAG 57.374 33.333 8.83 0.00 36.65 4.63
2456 3425 5.061684 AAAATAAATTTTTAGTGCGCGGAGC 59.938 36.000 8.83 0.00 43.51 4.70
2457 3426 7.064029 AAAATAAATTTTTAGTGCGCGGAGCT 61.064 34.615 8.83 8.13 44.33 4.09
2458 3427 8.775273 AAAATAAATTTTTAGTGCGCGGAGCTC 61.775 37.037 8.83 4.71 44.33 4.09
2470 3439 2.781945 CGGAGCTCTTTTTGTGCTTT 57.218 45.000 14.64 0.00 44.42 3.51
2471 3440 3.084070 CGGAGCTCTTTTTGTGCTTTT 57.916 42.857 14.64 0.00 44.42 2.27
2472 3441 2.791004 CGGAGCTCTTTTTGTGCTTTTG 59.209 45.455 14.64 0.00 44.42 2.44
2473 3442 3.734902 CGGAGCTCTTTTTGTGCTTTTGT 60.735 43.478 14.64 0.00 44.42 2.83
2474 3443 4.183865 GGAGCTCTTTTTGTGCTTTTGTT 58.816 39.130 14.64 0.00 44.42 2.83
2475 3444 4.033243 GGAGCTCTTTTTGTGCTTTTGTTG 59.967 41.667 14.64 0.00 44.42 3.33
2476 3445 4.819769 AGCTCTTTTTGTGCTTTTGTTGA 58.180 34.783 0.00 0.00 42.11 3.18
2477 3446 5.237048 AGCTCTTTTTGTGCTTTTGTTGAA 58.763 33.333 0.00 0.00 42.11 2.69
2478 3447 5.349543 AGCTCTTTTTGTGCTTTTGTTGAAG 59.650 36.000 0.00 0.00 42.11 3.02
2479 3448 5.348451 GCTCTTTTTGTGCTTTTGTTGAAGA 59.652 36.000 0.00 0.00 32.89 2.87
2480 3449 6.036408 GCTCTTTTTGTGCTTTTGTTGAAGAT 59.964 34.615 0.00 0.00 32.89 2.40
2481 3450 7.293402 TCTTTTTGTGCTTTTGTTGAAGATG 57.707 32.000 0.00 0.00 0.00 2.90
2482 3451 5.467902 TTTTGTGCTTTTGTTGAAGATGC 57.532 34.783 0.00 0.00 0.00 3.91
2483 3452 4.389890 TTGTGCTTTTGTTGAAGATGCT 57.610 36.364 0.00 0.00 0.00 3.79
2484 3453 3.968649 TGTGCTTTTGTTGAAGATGCTC 58.031 40.909 0.00 0.00 0.00 4.26
2485 3454 3.633525 TGTGCTTTTGTTGAAGATGCTCT 59.366 39.130 0.00 0.00 0.00 4.09
2486 3455 4.821260 TGTGCTTTTGTTGAAGATGCTCTA 59.179 37.500 0.00 0.00 0.00 2.43
2487 3456 5.299028 TGTGCTTTTGTTGAAGATGCTCTAA 59.701 36.000 0.00 0.00 0.00 2.10
2488 3457 5.626955 GTGCTTTTGTTGAAGATGCTCTAAC 59.373 40.000 0.00 0.00 0.00 2.34
2489 3458 5.157067 GCTTTTGTTGAAGATGCTCTAACC 58.843 41.667 0.00 0.00 0.00 2.85
2490 3459 5.356882 TTTTGTTGAAGATGCTCTAACCG 57.643 39.130 0.00 0.00 0.00 4.44
2491 3460 3.678056 TGTTGAAGATGCTCTAACCGT 57.322 42.857 0.00 0.00 0.00 4.83
2492 3461 3.585862 TGTTGAAGATGCTCTAACCGTC 58.414 45.455 0.00 0.00 0.00 4.79
2493 3462 3.006430 TGTTGAAGATGCTCTAACCGTCA 59.994 43.478 0.00 0.00 0.00 4.35
2494 3463 4.184629 GTTGAAGATGCTCTAACCGTCAT 58.815 43.478 0.00 0.00 0.00 3.06
2495 3464 3.785486 TGAAGATGCTCTAACCGTCATG 58.215 45.455 0.00 0.00 0.00 3.07
2496 3465 3.195610 TGAAGATGCTCTAACCGTCATGT 59.804 43.478 0.00 0.00 0.00 3.21
2497 3466 4.401202 TGAAGATGCTCTAACCGTCATGTA 59.599 41.667 0.00 0.00 0.00 2.29
2498 3467 4.576216 AGATGCTCTAACCGTCATGTAG 57.424 45.455 0.00 0.00 0.00 2.74
2499 3468 3.319405 AGATGCTCTAACCGTCATGTAGG 59.681 47.826 7.49 7.49 0.00 3.18
2500 3469 2.730382 TGCTCTAACCGTCATGTAGGA 58.270 47.619 14.41 0.00 0.00 2.94
2511 3480 4.570772 CCGTCATGTAGGAGTATTTGTTGG 59.429 45.833 3.63 0.00 0.00 3.77
2512 3481 4.570772 CGTCATGTAGGAGTATTTGTTGGG 59.429 45.833 0.00 0.00 0.00 4.12
2513 3482 5.625886 CGTCATGTAGGAGTATTTGTTGGGA 60.626 44.000 0.00 0.00 0.00 4.37
2514 3483 5.817816 GTCATGTAGGAGTATTTGTTGGGAG 59.182 44.000 0.00 0.00 0.00 4.30
2515 3484 5.724370 TCATGTAGGAGTATTTGTTGGGAGA 59.276 40.000 0.00 0.00 0.00 3.71
2516 3485 5.416271 TGTAGGAGTATTTGTTGGGAGAC 57.584 43.478 0.00 0.00 0.00 3.36
2517 3486 5.091552 TGTAGGAGTATTTGTTGGGAGACT 58.908 41.667 0.00 0.00 0.00 3.24
2519 3488 3.910627 AGGAGTATTTGTTGGGAGACTGT 59.089 43.478 0.00 0.00 0.00 3.55
2521 3490 4.455877 GGAGTATTTGTTGGGAGACTGTTG 59.544 45.833 0.00 0.00 0.00 3.33
2525 3494 3.855255 TTGTTGGGAGACTGTTGATGA 57.145 42.857 0.00 0.00 0.00 2.92
2526 3495 3.126001 TGTTGGGAGACTGTTGATGAC 57.874 47.619 0.00 0.00 0.00 3.06
2548 3517 1.141019 GATGTCAGGCGCGTAGGAA 59.859 57.895 8.43 0.00 0.00 3.36
2558 3527 1.125566 GCGCGTAGGAACAGTTTGTAC 59.874 52.381 8.43 0.00 0.00 2.90
2593 3571 4.735338 GCTGAAGTGTTTGCTGTAAACTTC 59.265 41.667 19.50 16.00 46.96 3.01
2594 3572 5.449177 GCTGAAGTGTTTGCTGTAAACTTCT 60.449 40.000 19.50 14.90 46.96 2.85
2595 3573 6.119144 TGAAGTGTTTGCTGTAAACTTCTC 57.881 37.500 19.50 13.47 46.96 2.87
2596 3574 4.795970 AGTGTTTGCTGTAAACTTCTCG 57.204 40.909 19.50 0.00 46.96 4.04
2647 3625 7.370383 TGATGTAAAATTCTTGCTGAAGTTCC 58.630 34.615 0.00 2.82 41.37 3.62
2658 3636 4.724399 TGCTGAAGTTCCAATTCCAGTAA 58.276 39.130 0.00 0.00 0.00 2.24
2666 3644 4.196626 TCCAATTCCAGTAACCTACACG 57.803 45.455 0.00 0.00 0.00 4.49
2673 3652 2.334838 CAGTAACCTACACGGCACTTC 58.665 52.381 0.00 0.00 35.61 3.01
2688 3667 3.365364 GGCACTTCTGTGAAATTCCTTCG 60.365 47.826 0.00 0.00 46.55 3.79
2698 3677 5.181245 TGTGAAATTCCTTCGGCTCTTAAAG 59.819 40.000 0.00 0.00 36.78 1.85
2704 3683 3.071892 TCCTTCGGCTCTTAAAGAAACCA 59.928 43.478 0.00 0.00 0.00 3.67
2715 3694 9.967346 GCTCTTAAAGAAACCACTCTTAAATTT 57.033 29.630 0.00 0.00 34.49 1.82
2717 3696 9.744468 TCTTAAAGAAACCACTCTTAAATTTGC 57.256 29.630 0.00 0.00 34.49 3.68
2794 3773 3.568443 TGCTTCGGTGGGTATGAGTATA 58.432 45.455 0.00 0.00 0.00 1.47
2795 3774 4.157246 TGCTTCGGTGGGTATGAGTATAT 58.843 43.478 0.00 0.00 0.00 0.86
2849 3832 9.773328 TGAAATGTCATCTATTTCAAATTCGAC 57.227 29.630 9.86 0.00 46.04 4.20
2856 3839 9.830975 TCATCTATTTCAAATTCGACAGGAATA 57.169 29.630 0.00 0.00 44.59 1.75
2882 3865 5.712152 AAAGTGATGTCCTTTGATTCACC 57.288 39.130 0.00 0.00 37.27 4.02
2886 3869 6.176183 AGTGATGTCCTTTGATTCACCTTAG 58.824 40.000 0.00 0.00 37.27 2.18
2887 3870 6.013379 AGTGATGTCCTTTGATTCACCTTAGA 60.013 38.462 0.00 0.00 37.27 2.10
2892 3875 7.918076 TGTCCTTTGATTCACCTTAGAGTTAT 58.082 34.615 0.00 0.00 0.00 1.89
2897 3880 9.535878 CTTTGATTCACCTTAGAGTTATAGGAC 57.464 37.037 0.00 0.00 33.21 3.85
2898 3881 8.603898 TTGATTCACCTTAGAGTTATAGGACA 57.396 34.615 0.00 0.00 33.21 4.02
2899 3882 8.603898 TGATTCACCTTAGAGTTATAGGACAA 57.396 34.615 0.00 0.00 33.21 3.18
2900 3883 9.213777 TGATTCACCTTAGAGTTATAGGACAAT 57.786 33.333 0.00 0.00 33.21 2.71
2901 3884 9.699703 GATTCACCTTAGAGTTATAGGACAATC 57.300 37.037 0.00 0.00 33.21 2.67
2902 3885 7.598759 TCACCTTAGAGTTATAGGACAATCC 57.401 40.000 0.00 0.00 36.58 3.01
2903 3886 6.553852 TCACCTTAGAGTTATAGGACAATCCC 59.446 42.308 0.00 0.00 37.19 3.85
2904 3887 6.555360 CACCTTAGAGTTATAGGACAATCCCT 59.445 42.308 0.00 0.00 37.19 4.20
2905 3888 6.783482 ACCTTAGAGTTATAGGACAATCCCTC 59.217 42.308 0.00 0.00 37.19 4.30
2906 3889 6.211785 CCTTAGAGTTATAGGACAATCCCTCC 59.788 46.154 0.00 0.00 37.19 4.30
2907 3890 5.157770 AGAGTTATAGGACAATCCCTCCA 57.842 43.478 0.00 0.00 37.19 3.86
2908 3891 5.731924 AGAGTTATAGGACAATCCCTCCAT 58.268 41.667 0.00 0.00 37.19 3.41
2909 3892 6.153924 AGAGTTATAGGACAATCCCTCCATT 58.846 40.000 0.00 0.00 37.19 3.16
2910 3893 6.271159 AGAGTTATAGGACAATCCCTCCATTC 59.729 42.308 0.00 0.00 37.19 2.67
2911 3894 5.310857 AGTTATAGGACAATCCCTCCATTCC 59.689 44.000 0.00 0.00 37.19 3.01
2912 3895 2.293598 AGGACAATCCCTCCATTCCT 57.706 50.000 0.00 0.00 37.19 3.36
2913 3896 3.438131 AGGACAATCCCTCCATTCCTA 57.562 47.619 0.00 0.00 37.19 2.94
2914 3897 3.747852 AGGACAATCCCTCCATTCCTAA 58.252 45.455 0.00 0.00 37.19 2.69
2915 3898 4.119155 AGGACAATCCCTCCATTCCTAAA 58.881 43.478 0.00 0.00 37.19 1.85
2916 3899 4.733988 AGGACAATCCCTCCATTCCTAAAT 59.266 41.667 0.00 0.00 37.19 1.40
2917 3900 5.917087 AGGACAATCCCTCCATTCCTAAATA 59.083 40.000 0.00 0.00 37.19 1.40
2918 3901 6.568040 AGGACAATCCCTCCATTCCTAAATAT 59.432 38.462 0.00 0.00 37.19 1.28
2919 3902 7.744068 AGGACAATCCCTCCATTCCTAAATATA 59.256 37.037 0.00 0.00 37.19 0.86
2920 3903 8.390921 GGACAATCCCTCCATTCCTAAATATAA 58.609 37.037 0.00 0.00 0.00 0.98
2921 3904 9.454859 GACAATCCCTCCATTCCTAAATATAAG 57.545 37.037 0.00 0.00 0.00 1.73
2922 3905 8.960064 ACAATCCCTCCATTCCTAAATATAAGT 58.040 33.333 0.00 0.00 0.00 2.24
2949 3932 9.956640 ATTCTCAGAGATTTCAATGTAAGTCTT 57.043 29.630 0.00 0.00 0.00 3.01
2950 3933 9.784531 TTCTCAGAGATTTCAATGTAAGTCTTT 57.215 29.630 0.00 0.00 0.00 2.52
2951 3934 9.784531 TCTCAGAGATTTCAATGTAAGTCTTTT 57.215 29.630 0.00 0.00 0.00 2.27
2953 3936 9.559732 TCAGAGATTTCAATGTAAGTCTTTTCA 57.440 29.630 0.00 0.00 0.00 2.69
2954 3937 9.823098 CAGAGATTTCAATGTAAGTCTTTTCAG 57.177 33.333 0.00 0.00 0.00 3.02
2955 3938 9.784531 AGAGATTTCAATGTAAGTCTTTTCAGA 57.215 29.630 0.00 0.00 0.00 3.27
2957 3940 9.784531 AGATTTCAATGTAAGTCTTTTCAGAGA 57.215 29.630 0.00 0.00 0.00 3.10
2961 3944 9.996554 TTCAATGTAAGTCTTTTCAGAGATACA 57.003 29.630 0.00 0.00 36.45 2.29
2969 3952 8.885494 AGTCTTTTCAGAGATACATATGAAGC 57.115 34.615 10.38 0.00 33.53 3.86
2970 3953 8.481314 AGTCTTTTCAGAGATACATATGAAGCA 58.519 33.333 10.38 0.00 33.53 3.91
2971 3954 9.102757 GTCTTTTCAGAGATACATATGAAGCAA 57.897 33.333 10.38 0.00 33.53 3.91
2972 3955 9.671279 TCTTTTCAGAGATACATATGAAGCAAA 57.329 29.630 10.38 0.00 33.53 3.68
3102 4085 9.650539 TGTAGTTCTATAGACTACATACGGATC 57.349 37.037 25.36 9.95 40.66 3.36
3103 4086 9.650539 GTAGTTCTATAGACTACATACGGATCA 57.349 37.037 23.47 0.00 37.05 2.92
3105 4088 9.570468 AGTTCTATAGACTACATACGGATCAAA 57.430 33.333 0.67 0.00 0.00 2.69
3111 4094 7.772332 AGACTACATACGGATCAAAATGTTC 57.228 36.000 10.22 4.95 34.54 3.18
3112 4095 7.327975 AGACTACATACGGATCAAAATGTTCA 58.672 34.615 10.22 0.00 34.54 3.18
3113 4096 7.987458 AGACTACATACGGATCAAAATGTTCAT 59.013 33.333 10.22 0.07 34.54 2.57
3114 4097 8.142994 ACTACATACGGATCAAAATGTTCATC 57.857 34.615 10.22 0.00 34.54 2.92
3115 4098 6.377327 ACATACGGATCAAAATGTTCATCC 57.623 37.500 0.00 0.00 32.75 3.51
3116 4099 5.885352 ACATACGGATCAAAATGTTCATCCA 59.115 36.000 0.00 0.00 35.42 3.41
3117 4100 6.547141 ACATACGGATCAAAATGTTCATCCAT 59.453 34.615 0.00 0.00 35.42 3.41
3118 4101 7.719193 ACATACGGATCAAAATGTTCATCCATA 59.281 33.333 0.00 0.00 35.42 2.74
3119 4102 8.733458 CATACGGATCAAAATGTTCATCCATAT 58.267 33.333 0.00 0.00 35.42 1.78
3120 4103 6.973843 ACGGATCAAAATGTTCATCCATATG 58.026 36.000 0.00 0.00 35.42 1.78
3121 4104 6.547141 ACGGATCAAAATGTTCATCCATATGT 59.453 34.615 0.00 0.00 35.42 2.29
3122 4105 7.719193 ACGGATCAAAATGTTCATCCATATGTA 59.281 33.333 0.00 0.00 35.42 2.29
3123 4106 8.733458 CGGATCAAAATGTTCATCCATATGTAT 58.267 33.333 0.00 0.00 35.42 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.404073 TCCTCCTGAAGAAGAAGTCTATGC 59.596 45.833 0.00 0.00 34.56 3.14
1 2 5.420421 TGTCCTCCTGAAGAAGAAGTCTATG 59.580 44.000 0.00 0.00 34.56 2.23
2 3 5.584913 TGTCCTCCTGAAGAAGAAGTCTAT 58.415 41.667 0.00 0.00 34.56 1.98
4 5 3.831911 CTGTCCTCCTGAAGAAGAAGTCT 59.168 47.826 0.00 0.00 38.69 3.24
6 7 2.903135 CCTGTCCTCCTGAAGAAGAAGT 59.097 50.000 0.00 0.00 0.00 3.01
7 8 2.354604 GCCTGTCCTCCTGAAGAAGAAG 60.355 54.545 0.00 0.00 0.00 2.85
8 9 1.625818 GCCTGTCCTCCTGAAGAAGAA 59.374 52.381 0.00 0.00 0.00 2.52
9 10 1.203237 AGCCTGTCCTCCTGAAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
10 11 1.066286 CAGCCTGTCCTCCTGAAGAAG 60.066 57.143 0.00 0.00 0.00 2.85
11 12 0.979665 CAGCCTGTCCTCCTGAAGAA 59.020 55.000 0.00 0.00 0.00 2.52
12 13 0.115152 TCAGCCTGTCCTCCTGAAGA 59.885 55.000 0.00 0.00 33.05 2.87
13 14 0.536260 CTCAGCCTGTCCTCCTGAAG 59.464 60.000 0.00 0.00 35.41 3.02
14 15 0.906756 CCTCAGCCTGTCCTCCTGAA 60.907 60.000 0.00 0.00 35.41 3.02
15 16 1.305633 CCTCAGCCTGTCCTCCTGA 60.306 63.158 0.00 0.00 34.68 3.86
16 17 0.324738 TACCTCAGCCTGTCCTCCTG 60.325 60.000 0.00 0.00 0.00 3.86
26 27 2.080654 ATGACTCTCCTACCTCAGCC 57.919 55.000 0.00 0.00 0.00 4.85
28 29 5.476599 CCTCATTATGACTCTCCTACCTCAG 59.523 48.000 0.00 0.00 0.00 3.35
37 39 6.286758 TCATTGCTTCCTCATTATGACTCTC 58.713 40.000 0.00 0.00 0.00 3.20
47 49 3.821600 GAGCATGATCATTGCTTCCTCAT 59.178 43.478 24.17 8.78 39.21 2.90
48 50 3.211865 GAGCATGATCATTGCTTCCTCA 58.788 45.455 24.17 0.00 39.21 3.86
116 118 1.559368 CCAACATCTTTGCCCATCCA 58.441 50.000 0.00 0.00 0.00 3.41
139 141 3.058224 CCTCAAAGTTTTCGCTACCCTTG 60.058 47.826 0.00 0.00 0.00 3.61
140 142 3.146847 CCTCAAAGTTTTCGCTACCCTT 58.853 45.455 0.00 0.00 0.00 3.95
144 146 2.742589 CCCTCCTCAAAGTTTTCGCTAC 59.257 50.000 0.00 0.00 0.00 3.58
152 165 1.821088 ACCACTCCCTCCTCAAAGTT 58.179 50.000 0.00 0.00 0.00 2.66
208 221 0.944311 CACCCACACTGCTACGACAC 60.944 60.000 0.00 0.00 0.00 3.67
264 294 9.457436 CATCCCAAATAGTTCATCATCATATCA 57.543 33.333 0.00 0.00 0.00 2.15
265 295 9.676861 TCATCCCAAATAGTTCATCATCATATC 57.323 33.333 0.00 0.00 0.00 1.63
372 403 7.435068 GTACACATGTACTCCATTTGAACTT 57.565 36.000 13.76 0.00 45.47 2.66
444 476 5.858581 GCACTATTTTGTCAAACTTGCTAGG 59.141 40.000 0.00 0.00 0.00 3.02
449 481 6.498304 AGAGTGCACTATTTTGTCAAACTTG 58.502 36.000 21.73 0.00 0.00 3.16
450 482 6.699575 AGAGTGCACTATTTTGTCAAACTT 57.300 33.333 21.73 0.00 0.00 2.66
487 519 9.528489 TCAATACTCTTAAGCCTTTAAAACCAT 57.472 29.630 0.00 0.00 0.00 3.55
536 568 8.094798 TCTAAAAGGACAACATGTGTAATGAC 57.905 34.615 0.00 0.00 41.96 3.06
542 574 6.357367 AGAACTCTAAAAGGACAACATGTGT 58.643 36.000 0.00 0.00 45.74 3.72
543 575 6.867662 AGAACTCTAAAAGGACAACATGTG 57.132 37.500 0.00 0.00 0.00 3.21
547 579 7.468631 GCATGAAAGAACTCTAAAAGGACAACA 60.469 37.037 0.00 0.00 0.00 3.33
548 580 6.858478 GCATGAAAGAACTCTAAAAGGACAAC 59.142 38.462 0.00 0.00 0.00 3.32
549 581 6.016276 GGCATGAAAGAACTCTAAAAGGACAA 60.016 38.462 0.00 0.00 0.00 3.18
550 582 5.473504 GGCATGAAAGAACTCTAAAAGGACA 59.526 40.000 0.00 0.00 0.00 4.02
551 583 5.473504 TGGCATGAAAGAACTCTAAAAGGAC 59.526 40.000 0.00 0.00 0.00 3.85
553 585 5.964958 TGGCATGAAAGAACTCTAAAAGG 57.035 39.130 0.00 0.00 0.00 3.11
562 1132 4.618489 CACTCGATTTTGGCATGAAAGAAC 59.382 41.667 0.00 0.00 0.00 3.01
565 1135 2.919229 GCACTCGATTTTGGCATGAAAG 59.081 45.455 0.00 0.00 0.00 2.62
569 1139 0.179129 GGGCACTCGATTTTGGCATG 60.179 55.000 14.65 0.00 40.00 4.06
571 1141 1.976474 GGGGCACTCGATTTTGGCA 60.976 57.895 14.65 0.00 40.00 4.92
572 1142 2.885113 GGGGCACTCGATTTTGGC 59.115 61.111 6.79 6.79 37.56 4.52
574 1144 1.674322 ACCGGGGCACTCGATTTTG 60.674 57.895 6.32 0.00 0.00 2.44
575 1145 1.674322 CACCGGGGCACTCGATTTT 60.674 57.895 6.32 0.00 0.00 1.82
576 1146 2.046314 CACCGGGGCACTCGATTT 60.046 61.111 6.32 0.00 0.00 2.17
577 1147 3.310860 GACACCGGGGCACTCGATT 62.311 63.158 1.73 0.00 0.00 3.34
580 1150 4.436998 GAGACACCGGGGCACTCG 62.437 72.222 1.73 0.00 0.00 4.18
581 1151 4.436998 CGAGACACCGGGGCACTC 62.437 72.222 18.03 18.03 0.00 3.51
605 1175 4.657824 ACCGAACCCGACACGCTG 62.658 66.667 0.00 0.00 38.22 5.18
606 1176 4.353437 GACCGAACCCGACACGCT 62.353 66.667 0.00 0.00 38.22 5.07
608 1178 2.430244 CAGACCGAACCCGACACG 60.430 66.667 0.00 0.00 38.22 4.49
609 1179 2.048503 CCAGACCGAACCCGACAC 60.049 66.667 0.00 0.00 38.22 3.67
610 1180 3.307906 CCCAGACCGAACCCGACA 61.308 66.667 0.00 0.00 38.22 4.35
612 1182 2.993264 GACCCAGACCGAACCCGA 60.993 66.667 0.00 0.00 38.22 5.14
613 1183 4.078516 GGACCCAGACCGAACCCG 62.079 72.222 0.00 0.00 0.00 5.28
625 1195 1.020861 AAATTAACGTCGGCGGACCC 61.021 55.000 16.39 0.00 43.45 4.46
627 1197 0.024111 CGAAATTAACGTCGGCGGAC 59.976 55.000 16.39 14.05 43.45 4.79
629 1199 0.925466 ATCGAAATTAACGTCGGCGG 59.075 50.000 16.39 0.00 43.45 6.13
630 1200 1.850441 AGATCGAAATTAACGTCGGCG 59.150 47.619 8.42 8.42 44.93 6.46
631 1201 5.186053 GTTTAGATCGAAATTAACGTCGGC 58.814 41.667 4.23 3.63 37.84 5.54
632 1202 5.553211 CGGTTTAGATCGAAATTAACGTCGG 60.553 44.000 4.23 0.00 37.84 4.79
633 1203 5.227805 TCGGTTTAGATCGAAATTAACGTCG 59.772 40.000 4.23 3.74 38.62 5.12
634 1204 6.033831 TGTCGGTTTAGATCGAAATTAACGTC 59.966 38.462 4.23 6.25 37.14 4.34
635 1205 5.863397 TGTCGGTTTAGATCGAAATTAACGT 59.137 36.000 4.23 0.00 37.14 3.99
637 1207 8.938047 TTTTGTCGGTTTAGATCGAAATTAAC 57.062 30.769 4.23 4.23 37.14 2.01
661 1231 4.955925 TCGTGTCGCATAAATCCATTTT 57.044 36.364 0.00 0.00 0.00 1.82
662 1232 5.499139 AATCGTGTCGCATAAATCCATTT 57.501 34.783 0.00 0.00 0.00 2.32
663 1233 5.179368 CCTAATCGTGTCGCATAAATCCATT 59.821 40.000 0.00 0.00 0.00 3.16
664 1234 4.690748 CCTAATCGTGTCGCATAAATCCAT 59.309 41.667 0.00 0.00 0.00 3.41
665 1235 4.055360 CCTAATCGTGTCGCATAAATCCA 58.945 43.478 0.00 0.00 0.00 3.41
666 1236 3.120649 GCCTAATCGTGTCGCATAAATCC 60.121 47.826 0.00 0.00 0.00 3.01
668 1238 2.806244 GGCCTAATCGTGTCGCATAAAT 59.194 45.455 0.00 0.00 0.00 1.40
670 1240 1.860676 GGCCTAATCGTGTCGCATAA 58.139 50.000 0.00 0.00 0.00 1.90
671 1241 0.318360 CGGCCTAATCGTGTCGCATA 60.318 55.000 0.00 0.00 0.00 3.14
672 1242 1.591594 CGGCCTAATCGTGTCGCAT 60.592 57.895 0.00 0.00 0.00 4.73
673 1243 2.011741 ATCGGCCTAATCGTGTCGCA 62.012 55.000 0.00 0.00 0.00 5.10
674 1244 0.874607 AATCGGCCTAATCGTGTCGC 60.875 55.000 0.00 0.00 0.00 5.19
675 1245 2.410785 TAATCGGCCTAATCGTGTCG 57.589 50.000 0.00 0.00 0.00 4.35
676 1246 5.163982 GCTTAATAATCGGCCTAATCGTGTC 60.164 44.000 0.00 0.00 0.00 3.67
677 1247 4.689345 GCTTAATAATCGGCCTAATCGTGT 59.311 41.667 0.00 0.00 0.00 4.49
679 1249 3.924686 CGCTTAATAATCGGCCTAATCGT 59.075 43.478 0.00 0.00 0.00 3.73
681 1251 4.927425 TGACGCTTAATAATCGGCCTAATC 59.073 41.667 0.00 0.00 0.00 1.75
682 1252 4.890088 TGACGCTTAATAATCGGCCTAAT 58.110 39.130 0.00 0.00 0.00 1.73
683 1253 4.325028 TGACGCTTAATAATCGGCCTAA 57.675 40.909 0.00 0.00 0.00 2.69
684 1254 4.053295 GTTGACGCTTAATAATCGGCCTA 58.947 43.478 0.00 0.00 0.00 3.93
685 1255 2.870411 GTTGACGCTTAATAATCGGCCT 59.130 45.455 0.00 0.00 0.00 5.19
686 1256 2.348218 CGTTGACGCTTAATAATCGGCC 60.348 50.000 0.00 0.00 0.00 6.13
687 1257 2.887733 CGTTGACGCTTAATAATCGGC 58.112 47.619 1.38 0.00 0.00 5.54
700 1270 2.658224 CGGTGTTTCTTTAGCGTTGACG 60.658 50.000 0.00 0.00 43.27 4.35
701 1271 2.349155 CCGGTGTTTCTTTAGCGTTGAC 60.349 50.000 0.00 0.00 36.18 3.18
702 1272 1.868498 CCGGTGTTTCTTTAGCGTTGA 59.132 47.619 0.00 0.00 36.18 3.18
703 1273 1.868498 TCCGGTGTTTCTTTAGCGTTG 59.132 47.619 0.00 0.00 36.18 4.10
706 1276 1.076332 CCTCCGGTGTTTCTTTAGCG 58.924 55.000 0.00 0.00 37.53 4.26
707 1277 0.803117 GCCTCCGGTGTTTCTTTAGC 59.197 55.000 0.00 0.00 0.00 3.09
708 1278 1.003233 AGGCCTCCGGTGTTTCTTTAG 59.997 52.381 0.00 0.00 0.00 1.85
709 1279 1.061546 AGGCCTCCGGTGTTTCTTTA 58.938 50.000 0.00 0.00 0.00 1.85
710 1280 0.537371 CAGGCCTCCGGTGTTTCTTT 60.537 55.000 0.00 0.00 0.00 2.52
711 1281 1.073199 CAGGCCTCCGGTGTTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
712 1282 1.705997 AACAGGCCTCCGGTGTTTCT 61.706 55.000 0.00 0.00 31.24 2.52
713 1283 1.228154 AACAGGCCTCCGGTGTTTC 60.228 57.895 0.00 0.00 31.24 2.78
714 1284 1.528309 CAACAGGCCTCCGGTGTTT 60.528 57.895 0.00 0.00 32.01 2.83
715 1285 2.113139 CAACAGGCCTCCGGTGTT 59.887 61.111 0.00 0.78 34.72 3.32
716 1286 3.953775 CCAACAGGCCTCCGGTGT 61.954 66.667 0.00 0.00 31.24 4.16
717 1287 4.722700 CCCAACAGGCCTCCGGTG 62.723 72.222 0.00 0.36 31.24 4.94
733 1303 4.864334 CATCTCCAGCCACGCCCC 62.864 72.222 0.00 0.00 0.00 5.80
735 1305 3.984193 AAGCATCTCCAGCCACGCC 62.984 63.158 0.00 0.00 0.00 5.68
736 1306 1.589716 AAAAGCATCTCCAGCCACGC 61.590 55.000 0.00 0.00 0.00 5.34
738 1308 1.745653 GGTAAAAGCATCTCCAGCCAC 59.254 52.381 0.00 0.00 0.00 5.01
739 1309 1.340991 GGGTAAAAGCATCTCCAGCCA 60.341 52.381 0.00 0.00 0.00 4.75
740 1310 1.064389 AGGGTAAAAGCATCTCCAGCC 60.064 52.381 0.00 0.00 0.00 4.85
741 1311 2.293170 GAGGGTAAAAGCATCTCCAGC 58.707 52.381 0.00 0.00 0.00 4.85
742 1312 3.054802 ACTGAGGGTAAAAGCATCTCCAG 60.055 47.826 0.00 0.00 0.00 3.86
743 1313 2.912956 ACTGAGGGTAAAAGCATCTCCA 59.087 45.455 0.00 0.00 0.00 3.86
745 1315 5.003804 TGAAACTGAGGGTAAAAGCATCTC 58.996 41.667 0.00 0.00 0.00 2.75
746 1316 4.762251 GTGAAACTGAGGGTAAAAGCATCT 59.238 41.667 0.00 0.00 0.00 2.90
747 1317 4.518970 TGTGAAACTGAGGGTAAAAGCATC 59.481 41.667 0.00 0.00 38.04 3.91
750 1320 4.321230 CCATGTGAAACTGAGGGTAAAAGC 60.321 45.833 0.00 0.00 38.04 3.51
752 1322 4.141135 TCCCATGTGAAACTGAGGGTAAAA 60.141 41.667 0.00 0.00 41.48 1.52
754 1324 2.983192 TCCCATGTGAAACTGAGGGTAA 59.017 45.455 0.00 0.00 41.48 2.85
755 1325 2.626785 TCCCATGTGAAACTGAGGGTA 58.373 47.619 0.00 0.00 41.48 3.69
758 1328 3.693085 CAGATTCCCATGTGAAACTGAGG 59.307 47.826 19.00 0.00 43.78 3.86
760 1330 3.330405 TCCAGATTCCCATGTGAAACTGA 59.670 43.478 23.42 11.08 43.78 3.41
761 1331 3.689347 TCCAGATTCCCATGTGAAACTG 58.311 45.455 17.48 17.48 41.92 3.16
762 1332 4.387026 TTCCAGATTCCCATGTGAAACT 57.613 40.909 0.00 0.00 38.04 2.66
763 1333 4.619160 GCTTTCCAGATTCCCATGTGAAAC 60.619 45.833 0.00 0.00 37.35 2.78
764 1334 3.511146 GCTTTCCAGATTCCCATGTGAAA 59.489 43.478 0.00 0.00 0.00 2.69
776 1668 2.273449 CCCAGCGGCTTTCCAGAT 59.727 61.111 0.00 0.00 0.00 2.90
794 1686 1.511464 CTCGTACTCGGTGTGTCGC 60.511 63.158 0.00 0.00 37.69 5.19
800 1692 1.351012 CGGCTACTCGTACTCGGTG 59.649 63.158 0.00 0.00 37.69 4.94
806 1698 3.909285 GGGGGCGGCTACTCGTAC 61.909 72.222 9.56 0.00 0.00 3.67
986 1937 2.874701 CTGGGCATCGAGTAAGGAAATG 59.125 50.000 0.00 0.00 0.00 2.32
989 1940 0.178068 GCTGGGCATCGAGTAAGGAA 59.822 55.000 0.00 0.00 0.00 3.36
1074 2026 2.434336 ATGTAGACATTTAGCGGAGCCA 59.566 45.455 0.00 0.00 45.75 4.75
1083 2035 7.382218 CGACATGCATGTAGATGTAGACATTTA 59.618 37.037 31.45 0.00 41.95 1.40
1089 2041 4.338118 TGTCGACATGCATGTAGATGTAGA 59.662 41.667 35.09 21.10 42.76 2.59
1123 2076 0.877071 ATCAGCAAAGTGAAGTGCGG 59.123 50.000 0.00 0.00 45.62 5.69
1148 2101 1.780806 CATGCATAGGACGAGAGCAG 58.219 55.000 0.00 0.00 38.75 4.24
1309 2263 3.771160 ACGTGGCGGTCCTCCATC 61.771 66.667 3.31 0.00 35.81 3.51
1594 2548 2.128729 CTCCCCGTTGAGGAGGATC 58.871 63.158 0.00 0.00 46.14 3.36
1781 2735 4.110482 GCATCAGCATTTTCATCAACTCC 58.890 43.478 0.00 0.00 41.58 3.85
1783 2737 3.428452 CCGCATCAGCATTTTCATCAACT 60.428 43.478 0.00 0.00 42.27 3.16
1784 2738 2.855963 CCGCATCAGCATTTTCATCAAC 59.144 45.455 0.00 0.00 42.27 3.18
1785 2739 2.492881 ACCGCATCAGCATTTTCATCAA 59.507 40.909 0.00 0.00 42.27 2.57
1787 2741 2.855963 CAACCGCATCAGCATTTTCATC 59.144 45.455 0.00 0.00 42.27 2.92
1810 2779 8.392612 TCAATTCATTCATATATGCACGCATAG 58.607 33.333 16.23 4.52 41.51 2.23
2104 3073 3.816920 CACGACGACGCAAGCGAG 61.817 66.667 22.30 15.98 43.96 5.03
2150 3119 2.892425 CGCCCGTTGGAGATGCTC 60.892 66.667 0.00 0.00 32.25 4.26
2153 3122 2.745884 TTGCGCCCGTTGGAGATG 60.746 61.111 4.18 0.00 32.25 2.90
2156 3125 2.668212 TTCTTGCGCCCGTTGGAG 60.668 61.111 4.18 0.00 34.00 3.86
2157 3126 2.975799 GTTCTTGCGCCCGTTGGA 60.976 61.111 4.18 0.00 0.00 3.53
2159 3128 2.051345 GTGTTCTTGCGCCCGTTG 60.051 61.111 4.18 0.00 0.00 4.10
2160 3129 2.203153 AGTGTTCTTGCGCCCGTT 60.203 55.556 4.18 0.00 0.00 4.44
2161 3130 2.665185 GAGTGTTCTTGCGCCCGT 60.665 61.111 4.18 0.00 0.00 5.28
2162 3131 3.423154 GGAGTGTTCTTGCGCCCG 61.423 66.667 4.18 0.00 0.00 6.13
2163 3132 3.423154 CGGAGTGTTCTTGCGCCC 61.423 66.667 4.18 0.00 0.00 6.13
2166 3135 4.430423 GCGCGGAGTGTTCTTGCG 62.430 66.667 8.83 0.00 45.07 4.85
2167 3136 4.090057 GGCGCGGAGTGTTCTTGC 62.090 66.667 8.83 0.00 41.96 4.01
2168 3137 3.423154 GGGCGCGGAGTGTTCTTG 61.423 66.667 8.83 0.00 41.96 3.02
2169 3138 2.748058 ATTGGGCGCGGAGTGTTCTT 62.748 55.000 8.83 0.00 41.96 2.52
2170 3139 3.254024 ATTGGGCGCGGAGTGTTCT 62.254 57.895 8.83 0.00 41.96 3.01
2171 3140 2.746277 ATTGGGCGCGGAGTGTTC 60.746 61.111 8.83 0.00 41.96 3.18
2172 3141 3.055719 CATTGGGCGCGGAGTGTT 61.056 61.111 8.83 0.00 41.96 3.32
2173 3142 3.545124 TTCATTGGGCGCGGAGTGT 62.545 57.895 8.83 0.00 41.96 3.55
2174 3143 2.745884 TTCATTGGGCGCGGAGTG 60.746 61.111 8.83 0.00 43.41 3.51
2175 3144 2.746277 GTTCATTGGGCGCGGAGT 60.746 61.111 8.83 0.00 0.00 3.85
2176 3145 1.656818 AATGTTCATTGGGCGCGGAG 61.657 55.000 8.83 0.00 0.00 4.63
2177 3146 0.393132 TAATGTTCATTGGGCGCGGA 60.393 50.000 8.83 0.00 0.00 5.54
2178 3147 0.667993 ATAATGTTCATTGGGCGCGG 59.332 50.000 8.83 0.00 0.00 6.46
2179 3148 2.548057 ACTATAATGTTCATTGGGCGCG 59.452 45.455 0.00 0.00 0.00 6.86
2180 3149 3.853307 GCACTATAATGTTCATTGGGCGC 60.853 47.826 0.00 0.00 0.00 6.53
2181 3150 3.606846 CGCACTATAATGTTCATTGGGCG 60.607 47.826 13.46 13.46 42.68 6.13
2182 3151 3.315191 ACGCACTATAATGTTCATTGGGC 59.685 43.478 8.11 3.98 0.00 5.36
2183 3152 4.574421 TGACGCACTATAATGTTCATTGGG 59.426 41.667 8.11 3.41 0.00 4.12
2184 3153 5.294306 AGTGACGCACTATAATGTTCATTGG 59.706 40.000 10.20 2.21 43.46 3.16
2185 3154 6.183360 ACAGTGACGCACTATAATGTTCATTG 60.183 38.462 11.31 8.08 43.43 2.82
2186 3155 5.874810 ACAGTGACGCACTATAATGTTCATT 59.125 36.000 11.31 3.55 43.43 2.57
2187 3156 5.419542 ACAGTGACGCACTATAATGTTCAT 58.580 37.500 11.31 0.00 43.43 2.57
2188 3157 4.816392 ACAGTGACGCACTATAATGTTCA 58.184 39.130 11.31 0.00 43.43 3.18
2189 3158 5.051641 GCTACAGTGACGCACTATAATGTTC 60.052 44.000 11.31 1.28 43.43 3.18
2190 3159 4.804139 GCTACAGTGACGCACTATAATGTT 59.196 41.667 11.31 0.00 43.43 2.71
2191 3160 4.360563 GCTACAGTGACGCACTATAATGT 58.639 43.478 11.31 8.80 43.43 2.71
2192 3161 3.422217 CGCTACAGTGACGCACTATAATG 59.578 47.826 11.31 4.12 43.43 1.90
2193 3162 3.066342 ACGCTACAGTGACGCACTATAAT 59.934 43.478 11.31 2.71 43.43 1.28
2194 3163 2.421073 ACGCTACAGTGACGCACTATAA 59.579 45.455 11.31 1.67 43.43 0.98
2195 3164 2.011947 ACGCTACAGTGACGCACTATA 58.988 47.619 11.31 5.28 43.43 1.31
2196 3165 0.809385 ACGCTACAGTGACGCACTAT 59.191 50.000 11.31 4.42 43.43 2.12
2197 3166 0.594602 AACGCTACAGTGACGCACTA 59.405 50.000 11.31 0.00 43.43 2.74
2198 3167 0.249322 AAACGCTACAGTGACGCACT 60.249 50.000 0.00 6.67 46.51 4.40
2199 3168 0.580104 AAAACGCTACAGTGACGCAC 59.420 50.000 0.00 2.28 34.10 5.34
2200 3169 1.292061 AAAAACGCTACAGTGACGCA 58.708 45.000 0.00 0.00 0.00 5.24
2201 3170 3.508648 TTAAAAACGCTACAGTGACGC 57.491 42.857 0.00 0.00 0.00 5.19
2202 3171 3.838550 GCATTAAAAACGCTACAGTGACG 59.161 43.478 0.00 0.00 0.00 4.35
2203 3172 3.838550 CGCATTAAAAACGCTACAGTGAC 59.161 43.478 0.00 0.00 0.00 3.67
2204 3173 4.060288 CGCATTAAAAACGCTACAGTGA 57.940 40.909 0.00 0.00 0.00 3.41
2213 3182 1.127951 AGTCTCGGCGCATTAAAAACG 59.872 47.619 10.83 0.00 0.00 3.60
2214 3183 2.894307 AGTCTCGGCGCATTAAAAAC 57.106 45.000 10.83 0.00 0.00 2.43
2215 3184 3.998341 AGTTAGTCTCGGCGCATTAAAAA 59.002 39.130 10.83 0.00 0.00 1.94
2216 3185 3.592059 AGTTAGTCTCGGCGCATTAAAA 58.408 40.909 10.83 0.00 0.00 1.52
2217 3186 3.241067 AGTTAGTCTCGGCGCATTAAA 57.759 42.857 10.83 0.00 0.00 1.52
2218 3187 2.953466 AGTTAGTCTCGGCGCATTAA 57.047 45.000 10.83 0.00 0.00 1.40
2219 3188 2.927477 CAAAGTTAGTCTCGGCGCATTA 59.073 45.455 10.83 0.00 0.00 1.90
2220 3189 1.732259 CAAAGTTAGTCTCGGCGCATT 59.268 47.619 10.83 0.00 0.00 3.56
2221 3190 1.359848 CAAAGTTAGTCTCGGCGCAT 58.640 50.000 10.83 0.00 0.00 4.73
2222 3191 1.289109 GCAAAGTTAGTCTCGGCGCA 61.289 55.000 10.83 0.00 0.00 6.09
2223 3192 1.014564 AGCAAAGTTAGTCTCGGCGC 61.015 55.000 0.00 0.00 32.70 6.53
2224 3193 1.429463 AAGCAAAGTTAGTCTCGGCG 58.571 50.000 0.00 0.00 32.70 6.46
2225 3194 3.181519 GCTAAAGCAAAGTTAGTCTCGGC 60.182 47.826 0.00 0.00 41.59 5.54
2226 3195 4.585619 GCTAAAGCAAAGTTAGTCTCGG 57.414 45.455 0.00 0.00 41.59 4.63
2246 3215 2.010817 CGTGTTTTTGAGCGCCTGC 61.011 57.895 2.29 0.00 43.24 4.85
2247 3216 2.010817 GCGTGTTTTTGAGCGCCTG 61.011 57.895 2.29 0.00 43.52 4.85
2248 3217 2.331451 GCGTGTTTTTGAGCGCCT 59.669 55.556 2.29 0.00 43.52 5.52
2249 3218 3.091022 CGCGTGTTTTTGAGCGCC 61.091 61.111 2.29 0.00 45.94 6.53
2252 3221 2.656192 TTAGACGCGTGTTTTTGAGC 57.344 45.000 20.70 0.00 0.00 4.26
2253 3222 4.086277 GCTTTTTAGACGCGTGTTTTTGAG 60.086 41.667 20.70 9.19 0.00 3.02
2254 3223 3.787105 GCTTTTTAGACGCGTGTTTTTGA 59.213 39.130 20.70 0.00 0.00 2.69
2255 3224 3.544285 TGCTTTTTAGACGCGTGTTTTTG 59.456 39.130 20.70 4.05 0.00 2.44
2256 3225 3.760537 TGCTTTTTAGACGCGTGTTTTT 58.239 36.364 20.70 0.00 0.00 1.94
2257 3226 3.064271 TCTGCTTTTTAGACGCGTGTTTT 59.936 39.130 20.70 1.31 0.00 2.43
2258 3227 2.610374 TCTGCTTTTTAGACGCGTGTTT 59.390 40.909 20.70 4.32 0.00 2.83
2259 3228 2.033151 GTCTGCTTTTTAGACGCGTGTT 60.033 45.455 20.70 7.39 35.68 3.32
2260 3229 1.525619 GTCTGCTTTTTAGACGCGTGT 59.474 47.619 20.70 17.60 35.68 4.49
2261 3230 1.136336 GGTCTGCTTTTTAGACGCGTG 60.136 52.381 20.70 0.00 44.24 5.34
2262 3231 1.145803 GGTCTGCTTTTTAGACGCGT 58.854 50.000 13.85 13.85 44.24 6.01
2263 3232 0.093026 CGGTCTGCTTTTTAGACGCG 59.907 55.000 3.53 3.53 44.24 6.01
2264 3233 1.136336 CACGGTCTGCTTTTTAGACGC 60.136 52.381 0.00 0.00 44.24 5.19
2265 3234 1.136336 GCACGGTCTGCTTTTTAGACG 60.136 52.381 0.00 0.00 44.24 4.18
2266 3235 2.596263 GCACGGTCTGCTTTTTAGAC 57.404 50.000 0.00 0.00 43.33 2.59
2276 3245 2.653890 CTTCACAATTTGCACGGTCTG 58.346 47.619 0.00 0.00 0.00 3.51
2277 3246 1.001378 GCTTCACAATTTGCACGGTCT 60.001 47.619 0.00 0.00 0.00 3.85
2278 3247 1.408422 GCTTCACAATTTGCACGGTC 58.592 50.000 0.00 0.00 0.00 4.79
2279 3248 0.317770 CGCTTCACAATTTGCACGGT 60.318 50.000 0.00 0.00 0.00 4.83
2280 3249 1.608093 GCGCTTCACAATTTGCACGG 61.608 55.000 0.00 0.00 0.00 4.94
2281 3250 1.768603 GCGCTTCACAATTTGCACG 59.231 52.632 0.00 0.00 0.00 5.34
2282 3251 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
2283 3252 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
2284 3253 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
2285 3254 3.046460 GCGCGCGCTTCACAATTTG 62.046 57.895 44.38 10.35 38.26 2.32
2286 3255 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
2302 3271 0.592247 CATATTTGAGCGCCGGTTGC 60.592 55.000 2.29 12.25 0.00 4.17
2303 3272 0.592247 GCATATTTGAGCGCCGGTTG 60.592 55.000 2.29 0.00 0.00 3.77
2304 3273 0.748005 AGCATATTTGAGCGCCGGTT 60.748 50.000 2.29 0.00 35.48 4.44
2305 3274 1.153168 AGCATATTTGAGCGCCGGT 60.153 52.632 2.29 0.00 35.48 5.28
2306 3275 1.280746 CAGCATATTTGAGCGCCGG 59.719 57.895 2.29 0.00 35.48 6.13
2307 3276 1.369689 GCAGCATATTTGAGCGCCG 60.370 57.895 2.29 0.00 35.48 6.46
2308 3277 1.008079 GGCAGCATATTTGAGCGCC 60.008 57.895 2.29 0.00 40.86 6.53
2309 3278 1.008079 GGGCAGCATATTTGAGCGC 60.008 57.895 0.00 0.00 35.48 5.92
2310 3279 1.280746 CGGGCAGCATATTTGAGCG 59.719 57.895 0.00 0.00 35.48 5.03
2311 3280 0.029834 CACGGGCAGCATATTTGAGC 59.970 55.000 0.00 0.00 0.00 4.26
2312 3281 1.667236 TCACGGGCAGCATATTTGAG 58.333 50.000 0.00 0.00 0.00 3.02
2313 3282 2.346766 ATCACGGGCAGCATATTTGA 57.653 45.000 0.00 0.00 0.00 2.69
2314 3283 2.095567 GCTATCACGGGCAGCATATTTG 60.096 50.000 6.25 0.00 35.35 2.32
2315 3284 2.154462 GCTATCACGGGCAGCATATTT 58.846 47.619 6.25 0.00 35.35 1.40
2316 3285 1.813513 GCTATCACGGGCAGCATATT 58.186 50.000 6.25 0.00 35.35 1.28
2317 3286 0.390340 CGCTATCACGGGCAGCATAT 60.390 55.000 11.04 0.00 34.94 1.78
2318 3287 1.006220 CGCTATCACGGGCAGCATA 60.006 57.895 11.04 0.00 34.94 3.14
2319 3288 2.280389 CGCTATCACGGGCAGCAT 60.280 61.111 11.04 0.00 34.94 3.79
2320 3289 2.796483 AAACGCTATCACGGGCAGCA 62.796 55.000 11.04 0.00 37.37 4.41
2321 3290 1.644786 AAAACGCTATCACGGGCAGC 61.645 55.000 1.32 1.32 37.37 5.25
2322 3291 0.373716 GAAAACGCTATCACGGGCAG 59.626 55.000 0.00 0.00 37.37 4.85
2323 3292 1.022451 GGAAAACGCTATCACGGGCA 61.022 55.000 0.00 0.00 37.37 5.36
2324 3293 1.022451 TGGAAAACGCTATCACGGGC 61.022 55.000 0.00 0.00 37.37 6.13
2325 3294 1.129811 GTTGGAAAACGCTATCACGGG 59.870 52.381 0.00 0.00 37.37 5.28
2326 3295 1.201877 CGTTGGAAAACGCTATCACGG 60.202 52.381 0.00 0.00 39.43 4.94
2327 3296 2.139336 CGTTGGAAAACGCTATCACG 57.861 50.000 0.00 0.00 39.43 4.35
2346 3315 3.341835 GATAGCTTCTGGGCGCGC 61.342 66.667 25.94 25.94 37.29 6.86
2347 3316 1.301244 ATGATAGCTTCTGGGCGCG 60.301 57.895 0.00 0.00 37.29 6.86
2348 3317 1.849976 GCATGATAGCTTCTGGGCGC 61.850 60.000 0.00 0.00 37.29 6.53
2349 3318 1.563435 CGCATGATAGCTTCTGGGCG 61.563 60.000 0.00 0.00 37.29 6.13
2350 3319 0.533755 ACGCATGATAGCTTCTGGGC 60.534 55.000 0.00 0.00 0.00 5.36
2351 3320 1.959042 AACGCATGATAGCTTCTGGG 58.041 50.000 0.00 0.00 0.00 4.45
2352 3321 4.142622 TGAAAAACGCATGATAGCTTCTGG 60.143 41.667 0.00 0.00 0.00 3.86
2353 3322 4.973396 TGAAAAACGCATGATAGCTTCTG 58.027 39.130 0.00 0.00 0.00 3.02
2354 3323 5.393962 GTTGAAAAACGCATGATAGCTTCT 58.606 37.500 0.00 0.00 0.00 2.85
2355 3324 4.260656 CGTTGAAAAACGCATGATAGCTTC 59.739 41.667 0.00 0.00 39.43 3.86
2356 3325 4.158384 CGTTGAAAAACGCATGATAGCTT 58.842 39.130 0.00 0.00 39.43 3.74
2357 3326 3.747193 CGTTGAAAAACGCATGATAGCT 58.253 40.909 0.00 0.00 39.43 3.32
2368 3337 3.391631 GGGCGCGCGTTGAAAAAC 61.392 61.111 32.35 11.65 0.00 2.43
2369 3338 2.884087 TTTGGGCGCGCGTTGAAAAA 62.884 50.000 32.35 20.29 0.00 1.94
2370 3339 2.884087 TTTTGGGCGCGCGTTGAAAA 62.884 50.000 32.35 26.15 0.00 2.29
2371 3340 3.411418 TTTTGGGCGCGCGTTGAAA 62.411 52.632 32.35 22.31 0.00 2.69
2372 3341 3.815569 CTTTTGGGCGCGCGTTGAA 62.816 57.895 32.35 17.77 0.00 2.69
2373 3342 4.320928 CTTTTGGGCGCGCGTTGA 62.321 61.111 32.35 12.33 0.00 3.18
2377 3346 4.999939 AAAGCTTTTGGGCGCGCG 63.000 61.111 28.44 28.44 37.29 6.86
2378 3347 1.344226 CTAAAAGCTTTTGGGCGCGC 61.344 55.000 30.21 25.94 37.29 6.86
2379 3348 1.344226 GCTAAAAGCTTTTGGGCGCG 61.344 55.000 30.21 0.00 38.45 6.86
2380 3349 1.344226 CGCTAAAAGCTTTTGGGCGC 61.344 55.000 36.17 27.94 42.00 6.53
2381 3350 1.344226 GCGCTAAAAGCTTTTGGGCG 61.344 55.000 38.76 38.76 46.09 6.13
2382 3351 0.319469 TGCGCTAAAAGCTTTTGGGC 60.319 50.000 32.12 32.12 39.60 5.36
2383 3352 1.792367 GTTGCGCTAAAAGCTTTTGGG 59.208 47.619 30.21 25.54 39.60 4.12
2384 3353 2.468831 TGTTGCGCTAAAAGCTTTTGG 58.531 42.857 30.21 28.04 39.60 3.28
2385 3354 3.551485 AGTTGTTGCGCTAAAAGCTTTTG 59.449 39.130 30.21 21.05 39.60 2.44
2386 3355 3.780902 AGTTGTTGCGCTAAAAGCTTTT 58.219 36.364 26.50 26.50 39.60 2.27
2387 3356 3.436700 AGTTGTTGCGCTAAAAGCTTT 57.563 38.095 9.73 5.69 39.60 3.51
2388 3357 3.066760 AGAAGTTGTTGCGCTAAAAGCTT 59.933 39.130 9.73 9.99 39.60 3.74
2389 3358 2.618709 AGAAGTTGTTGCGCTAAAAGCT 59.381 40.909 9.73 0.99 39.60 3.74
2390 3359 2.721090 CAGAAGTTGTTGCGCTAAAAGC 59.279 45.455 9.73 0.00 38.02 3.51
2391 3360 2.721090 GCAGAAGTTGTTGCGCTAAAAG 59.279 45.455 9.73 0.00 0.00 2.27
2392 3361 2.357637 AGCAGAAGTTGTTGCGCTAAAA 59.642 40.909 9.73 0.00 44.80 1.52
2393 3362 1.946768 AGCAGAAGTTGTTGCGCTAAA 59.053 42.857 9.73 0.00 44.80 1.85
2394 3363 1.264020 CAGCAGAAGTTGTTGCGCTAA 59.736 47.619 9.73 0.00 44.80 3.09
2395 3364 0.867746 CAGCAGAAGTTGTTGCGCTA 59.132 50.000 9.73 0.00 44.80 4.26
2396 3365 1.650912 CAGCAGAAGTTGTTGCGCT 59.349 52.632 9.73 0.00 44.80 5.92
2397 3366 1.370900 CCAGCAGAAGTTGTTGCGC 60.371 57.895 0.00 0.00 44.80 6.09
2398 3367 0.236711 CTCCAGCAGAAGTTGTTGCG 59.763 55.000 3.93 0.00 44.80 4.85
2399 3368 0.039708 GCTCCAGCAGAAGTTGTTGC 60.040 55.000 0.00 1.58 41.59 4.17
2400 3369 1.266175 CAGCTCCAGCAGAAGTTGTTG 59.734 52.381 0.48 0.00 45.16 3.33
2401 3370 1.133976 ACAGCTCCAGCAGAAGTTGTT 60.134 47.619 0.48 0.00 45.16 2.83
2402 3371 0.471617 ACAGCTCCAGCAGAAGTTGT 59.528 50.000 0.48 0.00 45.16 3.32
2403 3372 1.155042 GACAGCTCCAGCAGAAGTTG 58.845 55.000 0.48 0.00 45.16 3.16
2404 3373 0.036022 GGACAGCTCCAGCAGAAGTT 59.964 55.000 0.48 0.00 45.16 2.66
2405 3374 1.676384 GGACAGCTCCAGCAGAAGT 59.324 57.895 0.48 0.00 45.16 3.01
2406 3375 1.447489 CGGACAGCTCCAGCAGAAG 60.447 63.158 0.48 0.00 45.16 2.85
2407 3376 2.659016 CGGACAGCTCCAGCAGAA 59.341 61.111 0.48 0.00 45.16 3.02
2408 3377 3.385384 CCGGACAGCTCCAGCAGA 61.385 66.667 0.00 0.00 45.16 4.26
2409 3378 3.699894 ACCGGACAGCTCCAGCAG 61.700 66.667 9.46 0.00 45.16 4.24
2410 3379 4.007644 CACCGGACAGCTCCAGCA 62.008 66.667 9.46 0.00 45.16 4.41
2411 3380 2.167398 TAACACCGGACAGCTCCAGC 62.167 60.000 9.46 0.00 36.12 4.85
2412 3381 0.320374 TTAACACCGGACAGCTCCAG 59.680 55.000 9.46 0.00 36.12 3.86
2413 3382 0.759959 TTTAACACCGGACAGCTCCA 59.240 50.000 9.46 0.00 36.12 3.86
2414 3383 1.886886 TTTTAACACCGGACAGCTCC 58.113 50.000 9.46 0.00 0.00 4.70
2431 3400 6.400621 GCTCCGCGCACTAAAAATTTATTTTT 60.401 34.615 8.75 15.23 43.63 1.94
2432 3401 5.061684 GCTCCGCGCACTAAAAATTTATTTT 59.938 36.000 8.75 0.00 38.92 1.82
2433 3402 4.561213 GCTCCGCGCACTAAAAATTTATTT 59.439 37.500 8.75 0.00 38.92 1.40
2434 3403 4.102649 GCTCCGCGCACTAAAAATTTATT 58.897 39.130 8.75 0.00 38.92 1.40
2435 3404 3.377172 AGCTCCGCGCACTAAAAATTTAT 59.623 39.130 8.75 0.00 42.61 1.40
2436 3405 2.745281 AGCTCCGCGCACTAAAAATTTA 59.255 40.909 8.75 0.00 42.61 1.40
2437 3406 1.539827 AGCTCCGCGCACTAAAAATTT 59.460 42.857 8.75 0.00 42.61 1.82
2438 3407 1.130561 GAGCTCCGCGCACTAAAAATT 59.869 47.619 8.75 0.00 42.61 1.82
2439 3408 0.727398 GAGCTCCGCGCACTAAAAAT 59.273 50.000 8.75 0.00 42.61 1.82
2440 3409 0.320421 AGAGCTCCGCGCACTAAAAA 60.320 50.000 10.93 0.00 42.61 1.94
2441 3410 0.320421 AAGAGCTCCGCGCACTAAAA 60.320 50.000 10.93 0.00 38.68 1.52
2442 3411 0.320421 AAAGAGCTCCGCGCACTAAA 60.320 50.000 10.93 0.00 38.68 1.85
2443 3412 0.320421 AAAAGAGCTCCGCGCACTAA 60.320 50.000 10.93 0.00 38.68 2.24
2444 3413 0.320421 AAAAAGAGCTCCGCGCACTA 60.320 50.000 10.93 0.00 38.68 2.74
2445 3414 1.598130 AAAAAGAGCTCCGCGCACT 60.598 52.632 10.93 0.00 41.53 4.40
2446 3415 1.441016 CAAAAAGAGCTCCGCGCAC 60.441 57.895 10.93 0.00 42.61 5.34
2447 3416 1.891919 ACAAAAAGAGCTCCGCGCA 60.892 52.632 10.93 0.00 42.61 6.09
2448 3417 1.441016 CACAAAAAGAGCTCCGCGC 60.441 57.895 10.93 0.00 39.57 6.86
2449 3418 1.441016 GCACAAAAAGAGCTCCGCG 60.441 57.895 10.93 0.00 0.00 6.46
2450 3419 0.312102 AAGCACAAAAAGAGCTCCGC 59.688 50.000 10.93 2.13 43.70 5.54
2451 3420 2.781945 AAAGCACAAAAAGAGCTCCG 57.218 45.000 10.93 0.00 43.70 4.63
2452 3421 3.785486 ACAAAAGCACAAAAAGAGCTCC 58.215 40.909 10.93 0.00 43.70 4.70
2453 3422 4.864247 TCAACAAAAGCACAAAAAGAGCTC 59.136 37.500 5.27 5.27 43.70 4.09
2454 3423 4.819769 TCAACAAAAGCACAAAAAGAGCT 58.180 34.783 0.00 0.00 46.59 4.09
2455 3424 5.348451 TCTTCAACAAAAGCACAAAAAGAGC 59.652 36.000 0.00 0.00 0.00 4.09
2456 3425 6.949578 TCTTCAACAAAAGCACAAAAAGAG 57.050 33.333 0.00 0.00 0.00 2.85
2457 3426 6.183360 GCATCTTCAACAAAAGCACAAAAAGA 60.183 34.615 0.00 0.00 0.00 2.52
2458 3427 5.961263 GCATCTTCAACAAAAGCACAAAAAG 59.039 36.000 0.00 0.00 0.00 2.27
2459 3428 5.642919 AGCATCTTCAACAAAAGCACAAAAA 59.357 32.000 0.00 0.00 0.00 1.94
2460 3429 5.177326 AGCATCTTCAACAAAAGCACAAAA 58.823 33.333 0.00 0.00 0.00 2.44
2461 3430 4.757594 AGCATCTTCAACAAAAGCACAAA 58.242 34.783 0.00 0.00 0.00 2.83
2462 3431 4.362279 GAGCATCTTCAACAAAAGCACAA 58.638 39.130 0.00 0.00 0.00 3.33
2463 3432 3.968649 GAGCATCTTCAACAAAAGCACA 58.031 40.909 0.00 0.00 0.00 4.57
2478 3447 3.318275 TCCTACATGACGGTTAGAGCATC 59.682 47.826 0.00 0.00 0.00 3.91
2479 3448 3.296854 TCCTACATGACGGTTAGAGCAT 58.703 45.455 0.00 0.00 0.00 3.79
2480 3449 2.688446 CTCCTACATGACGGTTAGAGCA 59.312 50.000 0.00 0.00 0.00 4.26
2481 3450 2.688958 ACTCCTACATGACGGTTAGAGC 59.311 50.000 0.00 0.00 0.00 4.09
2482 3451 6.636562 AATACTCCTACATGACGGTTAGAG 57.363 41.667 0.00 0.00 0.00 2.43
2483 3452 6.379133 ACAAATACTCCTACATGACGGTTAGA 59.621 38.462 0.00 0.00 0.00 2.10
2484 3453 6.570692 ACAAATACTCCTACATGACGGTTAG 58.429 40.000 0.00 0.00 0.00 2.34
2485 3454 6.534475 ACAAATACTCCTACATGACGGTTA 57.466 37.500 0.00 0.00 0.00 2.85
2486 3455 5.416271 ACAAATACTCCTACATGACGGTT 57.584 39.130 0.00 0.00 0.00 4.44
2487 3456 5.175859 CAACAAATACTCCTACATGACGGT 58.824 41.667 0.00 0.00 0.00 4.83
2488 3457 4.570772 CCAACAAATACTCCTACATGACGG 59.429 45.833 0.00 0.00 0.00 4.79
2489 3458 4.570772 CCCAACAAATACTCCTACATGACG 59.429 45.833 0.00 0.00 0.00 4.35
2490 3459 5.741011 TCCCAACAAATACTCCTACATGAC 58.259 41.667 0.00 0.00 0.00 3.06
2491 3460 5.724370 TCTCCCAACAAATACTCCTACATGA 59.276 40.000 0.00 0.00 0.00 3.07
2492 3461 5.817816 GTCTCCCAACAAATACTCCTACATG 59.182 44.000 0.00 0.00 0.00 3.21
2493 3462 5.726793 AGTCTCCCAACAAATACTCCTACAT 59.273 40.000 0.00 0.00 0.00 2.29
2494 3463 5.046591 CAGTCTCCCAACAAATACTCCTACA 60.047 44.000 0.00 0.00 0.00 2.74
2495 3464 5.046520 ACAGTCTCCCAACAAATACTCCTAC 60.047 44.000 0.00 0.00 0.00 3.18
2496 3465 5.091552 ACAGTCTCCCAACAAATACTCCTA 58.908 41.667 0.00 0.00 0.00 2.94
2497 3466 3.910627 ACAGTCTCCCAACAAATACTCCT 59.089 43.478 0.00 0.00 0.00 3.69
2498 3467 4.287766 ACAGTCTCCCAACAAATACTCC 57.712 45.455 0.00 0.00 0.00 3.85
2499 3468 5.305585 TCAACAGTCTCCCAACAAATACTC 58.694 41.667 0.00 0.00 0.00 2.59
2500 3469 5.304686 TCAACAGTCTCCCAACAAATACT 57.695 39.130 0.00 0.00 0.00 2.12
2511 3480 4.999950 ACATCAAAGTCATCAACAGTCTCC 59.000 41.667 0.00 0.00 0.00 3.71
2512 3481 5.698089 TGACATCAAAGTCATCAACAGTCTC 59.302 40.000 0.00 0.00 43.18 3.36
2513 3482 5.614308 TGACATCAAAGTCATCAACAGTCT 58.386 37.500 0.00 0.00 43.18 3.24
2514 3483 5.106791 CCTGACATCAAAGTCATCAACAGTC 60.107 44.000 0.00 0.00 46.51 3.51
2515 3484 4.758674 CCTGACATCAAAGTCATCAACAGT 59.241 41.667 0.00 0.00 46.51 3.55
2516 3485 4.379186 GCCTGACATCAAAGTCATCAACAG 60.379 45.833 0.00 0.00 46.51 3.16
2517 3486 3.503363 GCCTGACATCAAAGTCATCAACA 59.497 43.478 0.00 0.00 46.51 3.33
2519 3488 2.743664 CGCCTGACATCAAAGTCATCAA 59.256 45.455 0.00 0.00 46.51 2.57
2521 3490 1.063174 GCGCCTGACATCAAAGTCATC 59.937 52.381 0.00 0.00 46.51 2.92
2525 3494 0.037697 TACGCGCCTGACATCAAAGT 60.038 50.000 5.73 0.00 0.00 2.66
2526 3495 0.647410 CTACGCGCCTGACATCAAAG 59.353 55.000 5.73 0.00 0.00 2.77
2548 3517 2.775384 TCACCTCCCTTGTACAAACTGT 59.225 45.455 10.03 0.44 0.00 3.55
2558 3527 0.689623 ACTTCAGCTCACCTCCCTTG 59.310 55.000 0.00 0.00 0.00 3.61
2593 3571 0.514691 GTGCACTTCCTTTCTGCGAG 59.485 55.000 10.32 0.00 33.35 5.03
2594 3572 0.106708 AGTGCACTTCCTTTCTGCGA 59.893 50.000 15.25 0.00 33.35 5.10
2595 3573 0.236711 CAGTGCACTTCCTTTCTGCG 59.763 55.000 18.94 0.00 33.35 5.18
2596 3574 0.595095 CCAGTGCACTTCCTTTCTGC 59.405 55.000 18.94 0.00 0.00 4.26
2647 3625 2.676342 GCCGTGTAGGTTACTGGAATTG 59.324 50.000 0.00 0.00 43.70 2.32
2658 3636 0.033504 CACAGAAGTGCCGTGTAGGT 59.966 55.000 0.00 0.00 43.70 3.08
2666 3644 3.365364 CGAAGGAATTTCACAGAAGTGCC 60.365 47.826 0.00 0.00 45.49 5.01
2688 3667 7.506328 TTTAAGAGTGGTTTCTTTAAGAGCC 57.494 36.000 9.61 9.61 38.35 4.70
2698 3677 4.866921 ACGGCAAATTTAAGAGTGGTTTC 58.133 39.130 0.00 0.00 0.00 2.78
2704 3683 6.870971 TGAACTTACGGCAAATTTAAGAGT 57.129 33.333 4.96 0.30 0.00 3.24
2715 3694 3.581024 ACTTCGTATGAACTTACGGCA 57.419 42.857 16.10 6.64 43.89 5.69
2716 3695 4.386652 TGAAACTTCGTATGAACTTACGGC 59.613 41.667 16.10 0.00 43.89 5.68
2717 3696 6.456447 TTGAAACTTCGTATGAACTTACGG 57.544 37.500 16.10 7.35 43.89 4.02
2742 3721 2.309136 AGGCCCAGCAATAAACAAGT 57.691 45.000 0.00 0.00 0.00 3.16
2862 3845 4.647564 AGGTGAATCAAAGGACATCACT 57.352 40.909 0.00 0.00 40.47 3.41
2863 3846 6.173339 TCTAAGGTGAATCAAAGGACATCAC 58.827 40.000 0.00 0.00 40.16 3.06
2881 3864 6.211785 GGAGGGATTGTCCTATAACTCTAAGG 59.788 46.154 0.00 0.00 37.25 2.69
2882 3865 6.782988 TGGAGGGATTGTCCTATAACTCTAAG 59.217 42.308 0.00 0.00 37.25 2.18
2886 3869 6.441088 AATGGAGGGATTGTCCTATAACTC 57.559 41.667 0.00 0.00 37.25 3.01
2887 3870 5.310857 GGAATGGAGGGATTGTCCTATAACT 59.689 44.000 0.00 0.00 37.25 2.24
2892 3875 3.438131 AGGAATGGAGGGATTGTCCTA 57.562 47.619 0.00 0.00 37.25 2.94
2923 3906 9.956640 AAGACTTACATTGAAATCTCTGAGAAT 57.043 29.630 12.00 0.00 0.00 2.40
2924 3907 9.784531 AAAGACTTACATTGAAATCTCTGAGAA 57.215 29.630 12.00 0.00 0.00 2.87
2925 3908 9.784531 AAAAGACTTACATTGAAATCTCTGAGA 57.215 29.630 10.23 10.23 0.00 3.27
2927 3910 9.559732 TGAAAAGACTTACATTGAAATCTCTGA 57.440 29.630 0.00 0.00 0.00 3.27
2928 3911 9.823098 CTGAAAAGACTTACATTGAAATCTCTG 57.177 33.333 0.00 0.00 0.00 3.35
2929 3912 9.784531 TCTGAAAAGACTTACATTGAAATCTCT 57.215 29.630 0.00 0.00 0.00 3.10
2931 3914 9.784531 TCTCTGAAAAGACTTACATTGAAATCT 57.215 29.630 0.00 0.00 0.00 2.40
2935 3918 9.996554 TGTATCTCTGAAAAGACTTACATTGAA 57.003 29.630 0.00 0.00 0.00 2.69
2943 3926 9.323985 GCTTCATATGTATCTCTGAAAAGACTT 57.676 33.333 1.90 0.00 0.00 3.01
2944 3927 8.481314 TGCTTCATATGTATCTCTGAAAAGACT 58.519 33.333 1.90 0.00 0.00 3.24
2945 3928 8.654230 TGCTTCATATGTATCTCTGAAAAGAC 57.346 34.615 1.90 0.00 0.00 3.01
2946 3929 9.671279 TTTGCTTCATATGTATCTCTGAAAAGA 57.329 29.630 1.90 0.00 0.00 2.52
3076 4059 9.650539 GATCCGTATGTAGTCTATAGAACTACA 57.349 37.037 28.17 28.17 46.66 2.74
3077 4060 9.650539 TGATCCGTATGTAGTCTATAGAACTAC 57.349 37.037 22.54 22.54 37.45 2.73
3079 4062 9.570468 TTTGATCCGTATGTAGTCTATAGAACT 57.430 33.333 3.40 7.00 0.00 3.01
3085 4068 9.477484 GAACATTTTGATCCGTATGTAGTCTAT 57.523 33.333 4.68 0.00 31.40 1.98
3086 4069 8.471609 TGAACATTTTGATCCGTATGTAGTCTA 58.528 33.333 4.68 0.00 31.40 2.59
3087 4070 7.327975 TGAACATTTTGATCCGTATGTAGTCT 58.672 34.615 4.68 0.00 31.40 3.24
3088 4071 7.534085 TGAACATTTTGATCCGTATGTAGTC 57.466 36.000 4.68 2.02 31.40 2.59
3089 4072 7.226720 GGATGAACATTTTGATCCGTATGTAGT 59.773 37.037 0.00 0.00 31.40 2.73
3090 4073 7.226523 TGGATGAACATTTTGATCCGTATGTAG 59.773 37.037 5.73 0.00 37.75 2.74
3091 4074 7.051000 TGGATGAACATTTTGATCCGTATGTA 58.949 34.615 5.73 0.00 37.75 2.29
3092 4075 5.885352 TGGATGAACATTTTGATCCGTATGT 59.115 36.000 5.73 0.00 37.75 2.29
3093 4076 6.375945 TGGATGAACATTTTGATCCGTATG 57.624 37.500 5.73 0.00 37.75 2.39
3094 4077 8.733458 CATATGGATGAACATTTTGATCCGTAT 58.267 33.333 15.26 15.26 43.48 3.06
3095 4078 7.719193 ACATATGGATGAACATTTTGATCCGTA 59.281 33.333 12.58 12.58 39.62 4.02
3096 4079 6.547141 ACATATGGATGAACATTTTGATCCGT 59.453 34.615 9.38 9.38 37.75 4.69
3097 4080 6.973843 ACATATGGATGAACATTTTGATCCG 58.026 36.000 7.80 0.00 37.75 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.