Multiple sequence alignment - TraesCS2B01G247900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G247900 chr2B 100.000 1900 0 0 879 2778 254621667 254623566 0.000000e+00 3509.0
1 TraesCS2B01G247900 chr2B 100.000 709 0 0 1 709 254620789 254621497 0.000000e+00 1310.0
2 TraesCS2B01G247900 chr2B 85.577 104 12 3 2608 2711 485044482 485044382 3.780000e-19 106.0
3 TraesCS2B01G247900 chr2B 82.051 78 12 2 2700 2776 200770732 200770656 6.420000e-07 65.8
4 TraesCS2B01G247900 chr2A 90.774 1409 74 24 889 2261 214237143 214238531 0.000000e+00 1831.0
5 TraesCS2B01G247900 chr2A 89.869 533 12 12 197 709 214236606 214237116 0.000000e+00 647.0
6 TraesCS2B01G247900 chr2A 89.941 169 17 0 2436 2604 214239608 214239776 4.660000e-53 219.0
7 TraesCS2B01G247900 chr2A 94.737 76 4 0 16 91 422790865 422790940 4.860000e-23 119.0
8 TraesCS2B01G247900 chr2A 84.444 90 11 3 2613 2700 578603590 578603678 4.930000e-13 86.1
9 TraesCS2B01G247900 chr2D 91.048 1240 62 20 1057 2261 197837504 197838729 0.000000e+00 1629.0
10 TraesCS2B01G247900 chr2D 89.839 620 24 13 106 709 197836388 197836984 0.000000e+00 760.0
11 TraesCS2B01G247900 chr2D 80.822 365 34 17 2256 2614 197838760 197839094 1.280000e-63 254.0
12 TraesCS2B01G247900 chr2D 97.931 145 2 1 1305 1449 628827165 628827022 1.650000e-62 250.0
13 TraesCS2B01G247900 chr2D 98.000 100 2 0 879 978 197836996 197837095 1.020000e-39 174.0
14 TraesCS2B01G247900 chr3D 95.652 161 7 0 1305 1465 93201203 93201363 2.740000e-65 259.0
15 TraesCS2B01G247900 chr7D 94.776 134 7 0 1325 1458 104961002 104960869 2.800000e-50 209.0
16 TraesCS2B01G247900 chr7D 91.011 89 4 2 1 89 630599369 630599285 1.750000e-22 117.0
17 TraesCS2B01G247900 chr7D 95.588 68 3 0 1324 1391 104961080 104961013 2.930000e-20 110.0
18 TraesCS2B01G247900 chr7D 88.043 92 7 2 1 92 43483388 43483475 3.780000e-19 106.0
19 TraesCS2B01G247900 chr7D 100.000 31 0 0 2701 2731 336645172 336645202 1.070000e-04 58.4
20 TraesCS2B01G247900 chr4A 90.110 91 4 3 1 91 707881777 707881692 2.260000e-21 113.0
21 TraesCS2B01G247900 chr4A 89.011 91 7 1 1 91 590959381 590959294 2.930000e-20 110.0
22 TraesCS2B01G247900 chr1B 90.909 88 3 4 2 89 517508987 517509069 2.260000e-21 113.0
23 TraesCS2B01G247900 chr1B 81.609 87 14 2 2691 2776 298503906 298503821 1.380000e-08 71.3
24 TraesCS2B01G247900 chr6D 89.011 91 6 2 1 91 428400310 428400396 2.930000e-20 110.0
25 TraesCS2B01G247900 chr3A 89.130 92 5 3 1 91 705777305 705777218 2.930000e-20 110.0
26 TraesCS2B01G247900 chr7A 88.043 92 6 3 1 91 702982089 702982002 1.360000e-18 104.0
27 TraesCS2B01G247900 chr4B 82.278 79 10 4 2701 2777 413007896 413007972 6.420000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G247900 chr2B 254620789 254623566 2777 False 2409.50 3509 100.000000 1 2778 2 chr2B.!!$F1 2777
1 TraesCS2B01G247900 chr2A 214236606 214239776 3170 False 899.00 1831 90.194667 197 2604 3 chr2A.!!$F3 2407
2 TraesCS2B01G247900 chr2D 197836388 197839094 2706 False 704.25 1629 89.927250 106 2614 4 chr2D.!!$F1 2508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 429 0.036671 GCCTAGGCGTACCAAGTTGT 60.037 55.000 20.16 0.0 39.06 3.32 F
1043 1067 1.219393 CTGCTCCTCCGTCTTTCCC 59.781 63.158 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1603 1.955080 GGAGAATACCAGACGTCCGAT 59.045 52.381 13.01 0.0 0.00 4.18 R
2713 4022 0.034574 TTCATGGGAATGACCGTGGG 60.035 55.000 7.96 0.0 45.59 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 4.717233 CAAGCATTGTACATGCCCTTAA 57.283 40.909 19.89 0.00 45.59 1.85
92 93 5.266733 CAAGCATTGTACATGCCCTTAAT 57.733 39.130 19.89 4.88 45.59 1.40
93 94 5.284079 CAAGCATTGTACATGCCCTTAATC 58.716 41.667 19.89 0.00 45.59 1.75
94 95 3.891366 AGCATTGTACATGCCCTTAATCC 59.109 43.478 19.89 0.00 45.59 3.01
95 96 3.005791 GCATTGTACATGCCCTTAATCCC 59.994 47.826 15.31 0.00 39.01 3.85
96 97 3.306472 TTGTACATGCCCTTAATCCCC 57.694 47.619 0.00 0.00 0.00 4.81
97 98 1.497286 TGTACATGCCCTTAATCCCCC 59.503 52.381 0.00 0.00 0.00 5.40
98 99 0.768622 TACATGCCCTTAATCCCCCG 59.231 55.000 0.00 0.00 0.00 5.73
99 100 1.903404 CATGCCCTTAATCCCCCGC 60.903 63.158 0.00 0.00 0.00 6.13
100 101 2.391130 ATGCCCTTAATCCCCCGCA 61.391 57.895 0.00 0.00 0.00 5.69
101 102 1.729267 ATGCCCTTAATCCCCCGCAT 61.729 55.000 0.00 0.00 32.32 4.73
102 103 1.603739 GCCCTTAATCCCCCGCATC 60.604 63.158 0.00 0.00 0.00 3.91
103 104 1.074951 CCCTTAATCCCCCGCATCC 59.925 63.158 0.00 0.00 0.00 3.51
104 105 1.427072 CCCTTAATCCCCCGCATCCT 61.427 60.000 0.00 0.00 0.00 3.24
144 145 1.221840 GGAGGCCATCGTCATGTGT 59.778 57.895 5.01 0.00 0.00 3.72
145 146 1.091771 GGAGGCCATCGTCATGTGTG 61.092 60.000 5.01 0.00 0.00 3.82
155 156 3.586430 TCATGTGTGACACGAGGTG 57.414 52.632 11.51 7.45 37.14 4.00
166 167 3.983317 ACACGAGGTGTCCATGCATGG 62.983 57.143 35.76 35.76 43.92 3.66
178 179 3.671008 CATGCATGGATAATTGGTGGG 57.329 47.619 19.40 0.00 0.00 4.61
179 180 3.232662 CATGCATGGATAATTGGTGGGA 58.767 45.455 19.40 0.00 0.00 4.37
180 181 2.948115 TGCATGGATAATTGGTGGGAG 58.052 47.619 0.00 0.00 0.00 4.30
181 182 1.615392 GCATGGATAATTGGTGGGAGC 59.385 52.381 0.00 0.00 0.00 4.70
182 183 2.948115 CATGGATAATTGGTGGGAGCA 58.052 47.619 0.00 0.00 0.00 4.26
183 184 3.503365 CATGGATAATTGGTGGGAGCAT 58.497 45.455 0.00 0.00 0.00 3.79
289 293 2.877974 GCGAGAAACCAACGCGTGT 61.878 57.895 14.98 3.90 42.65 4.49
369 373 5.317733 AGCTCTCGCTAATCCATACATAC 57.682 43.478 0.00 0.00 46.79 2.39
371 375 5.098893 GCTCTCGCTAATCCATACATACAG 58.901 45.833 0.00 0.00 0.00 2.74
372 376 5.644977 TCTCGCTAATCCATACATACAGG 57.355 43.478 0.00 0.00 0.00 4.00
373 377 4.082190 TCTCGCTAATCCATACATACAGGC 60.082 45.833 0.00 0.00 0.00 4.85
374 378 3.576550 TCGCTAATCCATACATACAGGCA 59.423 43.478 0.00 0.00 0.00 4.75
375 379 4.222810 TCGCTAATCCATACATACAGGCAT 59.777 41.667 0.00 0.00 0.00 4.40
376 380 5.420739 TCGCTAATCCATACATACAGGCATA 59.579 40.000 0.00 0.00 0.00 3.14
377 381 5.520288 CGCTAATCCATACATACAGGCATAC 59.480 44.000 0.00 0.00 0.00 2.39
378 382 6.406370 GCTAATCCATACATACAGGCATACA 58.594 40.000 0.00 0.00 0.00 2.29
379 383 6.536582 GCTAATCCATACATACAGGCATACAG 59.463 42.308 0.00 0.00 0.00 2.74
404 408 3.827817 TGAGATACCTCCACCGGATAT 57.172 47.619 9.46 0.00 38.66 1.63
424 428 2.763651 GCCTAGGCGTACCAAGTTG 58.236 57.895 20.16 0.00 39.06 3.16
425 429 0.036671 GCCTAGGCGTACCAAGTTGT 60.037 55.000 20.16 0.00 39.06 3.32
433 437 4.397417 AGGCGTACCAAGTTGTAGTAGTAG 59.603 45.833 1.45 0.00 39.06 2.57
535 547 7.243487 TGTAAACCGTGTCTAATAAGTACTCG 58.757 38.462 0.00 0.00 0.00 4.18
536 548 5.886960 AACCGTGTCTAATAAGTACTCGT 57.113 39.130 0.00 0.00 0.00 4.18
537 549 6.985188 AACCGTGTCTAATAAGTACTCGTA 57.015 37.500 0.00 0.00 0.00 3.43
538 550 6.351327 ACCGTGTCTAATAAGTACTCGTAC 57.649 41.667 0.00 0.00 36.35 3.67
540 552 6.256757 ACCGTGTCTAATAAGTACTCGTACTC 59.743 42.308 9.93 0.00 44.96 2.59
542 554 6.561166 CGTGTCTAATAAGTACTCGTACTCGG 60.561 46.154 9.93 1.09 44.96 4.63
619 634 2.755836 GCAGACAGCGAAAGAAACAA 57.244 45.000 0.00 0.00 0.00 2.83
621 636 2.032178 GCAGACAGCGAAAGAAACAACT 59.968 45.455 0.00 0.00 0.00 3.16
624 639 3.489785 AGACAGCGAAAGAAACAACTACG 59.510 43.478 0.00 0.00 0.00 3.51
1035 1059 1.254284 AACACTCTCCTGCTCCTCCG 61.254 60.000 0.00 0.00 0.00 4.63
1043 1067 1.219393 CTGCTCCTCCGTCTTTCCC 59.781 63.158 0.00 0.00 0.00 3.97
1102 1461 2.892425 CAATCGACCGGAGCCAGC 60.892 66.667 9.46 0.00 0.00 4.85
1152 1513 1.294780 CAAGCAGACGGCCTTCTCT 59.705 57.895 9.19 7.05 46.50 3.10
1260 1621 2.033049 CGAATCGGACGTCTGGTATTCT 59.967 50.000 24.87 7.95 0.00 2.40
1448 1809 4.070552 GTTCGCCGACCTGGAGCT 62.071 66.667 0.00 0.00 42.00 4.09
1449 1810 4.069232 TTCGCCGACCTGGAGCTG 62.069 66.667 0.00 0.00 42.00 4.24
1479 1840 2.724708 CGACGAGCAGCAGCAAGAC 61.725 63.158 3.17 0.00 45.49 3.01
1637 1998 0.546747 TTCCCCGGATGACCTCAACT 60.547 55.000 0.73 0.00 0.00 3.16
1668 2029 2.019984 GGCTGCTCGGAATCAGAAAAT 58.980 47.619 10.11 0.00 32.26 1.82
1669 2030 2.424956 GGCTGCTCGGAATCAGAAAATT 59.575 45.455 10.11 0.00 32.26 1.82
1670 2031 3.488216 GGCTGCTCGGAATCAGAAAATTC 60.488 47.826 10.11 0.00 35.35 2.17
1738 2103 6.647067 TGTTTGATTTTTGTTCCAACGAGTTT 59.353 30.769 0.00 0.00 0.00 2.66
1830 2211 3.067461 TGTTGTTGATTGTGTAGTTGGGC 59.933 43.478 0.00 0.00 0.00 5.36
1861 2242 3.446516 ACCGAAGATGGTTGGAGTACTAC 59.553 47.826 0.00 0.00 39.99 2.73
1862 2243 3.700038 CCGAAGATGGTTGGAGTACTACT 59.300 47.826 6.66 0.00 0.00 2.57
1863 2244 4.885907 CCGAAGATGGTTGGAGTACTACTA 59.114 45.833 6.66 0.00 0.00 1.82
1890 2271 3.882888 TCTTTCTAGTTTGTTGTGGCCTG 59.117 43.478 3.32 0.00 0.00 4.85
1895 2276 3.525268 AGTTTGTTGTGGCCTGAAAAG 57.475 42.857 3.32 0.00 0.00 2.27
1943 2324 6.986231 TGACGAGAGCAATAATAATGACATGT 59.014 34.615 0.00 0.00 0.00 3.21
1984 2366 7.253422 AGTATGCTTTCAAATCATGCTTGTAC 58.747 34.615 0.00 0.00 30.80 2.90
1985 2367 5.450592 TGCTTTCAAATCATGCTTGTACA 57.549 34.783 0.00 0.00 0.00 2.90
1986 2368 5.463286 TGCTTTCAAATCATGCTTGTACAG 58.537 37.500 0.00 0.00 0.00 2.74
1987 2369 5.009911 TGCTTTCAAATCATGCTTGTACAGT 59.990 36.000 0.00 0.00 0.00 3.55
1988 2370 6.206438 TGCTTTCAAATCATGCTTGTACAGTA 59.794 34.615 0.00 0.00 0.00 2.74
2077 2465 6.447084 TGGGGAAATTAGTATGACCTCTCTTT 59.553 38.462 0.00 0.00 0.00 2.52
2126 2523 9.860650 TTTTAATATGGACTACATAACAGCCAT 57.139 29.630 0.00 0.00 44.75 4.40
2133 2530 8.846943 TGGACTACATAACAGCCATAAATATG 57.153 34.615 0.00 0.00 0.00 1.78
2140 2537 9.965824 ACATAACAGCCATAAATATGCTAAAAC 57.034 29.630 0.00 0.00 32.40 2.43
2141 2538 9.964303 CATAACAGCCATAAATATGCTAAAACA 57.036 29.630 0.00 0.00 32.40 2.83
2162 2562 9.734620 AAAACACATCAATATACATCCGATTTG 57.265 29.630 0.00 0.00 0.00 2.32
2213 2613 1.076777 CGGATTGGTTGGGAGGCAT 60.077 57.895 0.00 0.00 0.00 4.40
2214 2614 1.386525 CGGATTGGTTGGGAGGCATG 61.387 60.000 0.00 0.00 0.00 4.06
2233 2633 5.415701 GGCATGAGGTTTGAGTTTATGAGAA 59.584 40.000 0.00 0.00 0.00 2.87
2239 2639 8.677300 TGAGGTTTGAGTTTATGAGAAATATGC 58.323 33.333 0.00 0.00 0.00 3.14
2295 2731 3.118408 CCTCGTCTTCCCCATGTTAATGA 60.118 47.826 0.00 0.00 35.67 2.57
2296 2732 4.122776 CTCGTCTTCCCCATGTTAATGAG 58.877 47.826 0.00 0.00 35.67 2.90
2297 2733 3.517901 TCGTCTTCCCCATGTTAATGAGT 59.482 43.478 0.00 0.00 35.67 3.41
2336 2772 4.832248 TCTCAAACTGCCACCACTTATAG 58.168 43.478 0.00 0.00 0.00 1.31
2337 2773 4.286032 TCTCAAACTGCCACCACTTATAGT 59.714 41.667 0.00 0.00 0.00 2.12
2343 2779 6.651975 ACTGCCACCACTTATAGTATCTAC 57.348 41.667 0.00 0.00 0.00 2.59
2344 2780 6.134055 ACTGCCACCACTTATAGTATCTACA 58.866 40.000 0.00 0.00 0.00 2.74
2345 2781 6.610020 ACTGCCACCACTTATAGTATCTACAA 59.390 38.462 0.00 0.00 0.00 2.41
2346 2782 6.812998 TGCCACCACTTATAGTATCTACAAC 58.187 40.000 0.00 0.00 0.00 3.32
2347 2783 6.381707 TGCCACCACTTATAGTATCTACAACA 59.618 38.462 0.00 0.00 0.00 3.33
2349 2785 7.224167 GCCACCACTTATAGTATCTACAACAAC 59.776 40.741 0.00 0.00 0.00 3.32
2350 2786 8.255206 CCACCACTTATAGTATCTACAACAACA 58.745 37.037 0.00 0.00 0.00 3.33
2384 2824 3.379445 CCCTATACGCCGGCGGAT 61.379 66.667 44.89 44.89 45.86 4.18
2398 2838 2.588314 GGATGCTCTCGCTGGCAG 60.588 66.667 10.94 10.94 41.88 4.85
2425 2865 1.753073 GGCAATCCCCATTTGTCTCTG 59.247 52.381 0.00 0.00 0.00 3.35
2443 2883 1.909302 CTGTCCACAACCATAGTCCCT 59.091 52.381 0.00 0.00 0.00 4.20
2447 3754 5.473273 TGTCCACAACCATAGTCCCTATAT 58.527 41.667 0.00 0.00 0.00 0.86
2469 3776 2.223340 GCCCGCACTCAAATTCATACAG 60.223 50.000 0.00 0.00 0.00 2.74
2482 3789 4.787260 TTCATACAGTGCATGCAACAAT 57.213 36.364 24.58 10.93 0.00 2.71
2484 3791 3.506844 TCATACAGTGCATGCAACAATGT 59.493 39.130 24.58 24.12 46.81 2.71
2491 3798 5.177881 CAGTGCATGCAACAATGTAAACAAT 59.822 36.000 24.58 0.00 0.00 2.71
2569 3878 0.108472 GTCTTTTAGGTCGACGGGGG 60.108 60.000 9.92 0.00 0.00 5.40
2604 3913 4.521062 CGGGAAGAGCTGGCCTCG 62.521 72.222 3.32 0.00 45.54 4.63
2605 3914 4.847444 GGGAAGAGCTGGCCTCGC 62.847 72.222 3.32 6.93 45.54 5.03
2607 3916 4.443266 GAAGAGCTGGCCTCGCGT 62.443 66.667 5.77 0.00 45.54 6.01
2609 3918 4.749310 AGAGCTGGCCTCGCGTTG 62.749 66.667 5.77 0.00 45.54 4.10
2622 3931 4.796231 CGTTGCCCTCCGACTCCG 62.796 72.222 0.00 0.00 0.00 4.63
2632 3941 4.592192 CGACTCCGGCATCCGCAT 62.592 66.667 0.00 0.00 46.86 4.73
2633 3942 2.663188 GACTCCGGCATCCGCATC 60.663 66.667 0.00 0.00 46.86 3.91
2634 3943 4.241555 ACTCCGGCATCCGCATCC 62.242 66.667 0.00 0.00 46.86 3.51
2635 3944 3.933722 CTCCGGCATCCGCATCCT 61.934 66.667 0.00 0.00 46.86 3.24
2636 3945 3.873026 CTCCGGCATCCGCATCCTC 62.873 68.421 0.00 0.00 46.86 3.71
2637 3946 4.240103 CCGGCATCCGCATCCTCA 62.240 66.667 0.00 0.00 46.86 3.86
2638 3947 2.969238 CGGCATCCGCATCCTCAC 60.969 66.667 0.00 0.00 41.17 3.51
2639 3948 2.969238 GGCATCCGCATCCTCACG 60.969 66.667 0.00 0.00 41.24 4.35
2661 3970 2.357517 CCGCAGGCACGAGAAACT 60.358 61.111 1.20 0.00 46.14 2.66
2662 3971 1.080093 CCGCAGGCACGAGAAACTA 60.080 57.895 1.20 0.00 46.14 2.24
2663 3972 1.078759 CCGCAGGCACGAGAAACTAG 61.079 60.000 1.20 0.00 46.14 2.57
2664 3973 1.687494 CGCAGGCACGAGAAACTAGC 61.687 60.000 0.00 0.00 34.06 3.42
2665 3974 1.687494 GCAGGCACGAGAAACTAGCG 61.687 60.000 0.00 0.00 0.00 4.26
2666 3975 0.109272 CAGGCACGAGAAACTAGCGA 60.109 55.000 0.00 0.00 0.00 4.93
2667 3976 0.818296 AGGCACGAGAAACTAGCGAT 59.182 50.000 0.00 0.00 0.00 4.58
2668 3977 0.924090 GGCACGAGAAACTAGCGATG 59.076 55.000 0.00 0.00 0.00 3.84
2669 3978 0.299003 GCACGAGAAACTAGCGATGC 59.701 55.000 0.00 0.00 0.00 3.91
2670 3979 0.924090 CACGAGAAACTAGCGATGCC 59.076 55.000 0.00 0.00 0.00 4.40
2671 3980 0.179108 ACGAGAAACTAGCGATGCCC 60.179 55.000 0.00 0.00 0.00 5.36
2672 3981 1.209275 CGAGAAACTAGCGATGCCCG 61.209 60.000 0.00 0.00 42.21 6.13
2673 3982 0.876342 GAGAAACTAGCGATGCCCGG 60.876 60.000 0.00 0.00 39.04 5.73
2674 3983 1.887707 GAAACTAGCGATGCCCGGG 60.888 63.158 19.09 19.09 39.04 5.73
2675 3984 4.547367 AACTAGCGATGCCCGGGC 62.547 66.667 39.40 39.40 42.35 6.13
2692 4001 4.834453 CAGAGCTGGCGCAGGAGG 62.834 72.222 10.83 0.00 39.10 4.30
2697 4006 4.479993 CTGGCGCAGGAGGGGAAG 62.480 72.222 10.83 0.00 0.00 3.46
2701 4010 4.101448 CGCAGGAGGGGAAGGGTG 62.101 72.222 0.00 0.00 0.00 4.61
2702 4011 2.610859 GCAGGAGGGGAAGGGTGA 60.611 66.667 0.00 0.00 0.00 4.02
2703 4012 2.003548 GCAGGAGGGGAAGGGTGAT 61.004 63.158 0.00 0.00 0.00 3.06
2704 4013 1.918253 CAGGAGGGGAAGGGTGATG 59.082 63.158 0.00 0.00 0.00 3.07
2705 4014 2.003548 AGGAGGGGAAGGGTGATGC 61.004 63.158 0.00 0.00 0.00 3.91
2706 4015 2.190578 GAGGGGAAGGGTGATGCG 59.809 66.667 0.00 0.00 0.00 4.73
2707 4016 3.406595 GAGGGGAAGGGTGATGCGG 62.407 68.421 0.00 0.00 0.00 5.69
2708 4017 3.407967 GGGGAAGGGTGATGCGGA 61.408 66.667 0.00 0.00 0.00 5.54
2709 4018 2.190578 GGGAAGGGTGATGCGGAG 59.809 66.667 0.00 0.00 0.00 4.63
2724 4033 4.963878 GAGCATCCCACGGTCATT 57.036 55.556 0.00 0.00 0.00 2.57
2725 4034 2.695314 GAGCATCCCACGGTCATTC 58.305 57.895 0.00 0.00 0.00 2.67
2726 4035 0.815615 GAGCATCCCACGGTCATTCC 60.816 60.000 0.00 0.00 0.00 3.01
2727 4036 1.823899 GCATCCCACGGTCATTCCC 60.824 63.158 0.00 0.00 0.00 3.97
2728 4037 1.607071 CATCCCACGGTCATTCCCA 59.393 57.895 0.00 0.00 0.00 4.37
2729 4038 0.183492 CATCCCACGGTCATTCCCAT 59.817 55.000 0.00 0.00 0.00 4.00
2730 4039 0.183492 ATCCCACGGTCATTCCCATG 59.817 55.000 0.00 0.00 0.00 3.66
2731 4040 0.912006 TCCCACGGTCATTCCCATGA 60.912 55.000 0.00 0.00 37.05 3.07
2732 4041 0.034574 CCCACGGTCATTCCCATGAA 60.035 55.000 0.00 0.00 41.30 2.57
2733 4042 1.094785 CCACGGTCATTCCCATGAAC 58.905 55.000 0.00 0.00 43.01 3.18
2734 4043 1.094785 CACGGTCATTCCCATGAACC 58.905 55.000 0.00 0.00 43.48 3.62
2735 4044 0.695924 ACGGTCATTCCCATGAACCA 59.304 50.000 0.00 0.00 43.48 3.67
2736 4045 1.074727 ACGGTCATTCCCATGAACCAA 59.925 47.619 0.00 0.00 43.48 3.67
2737 4046 1.472480 CGGTCATTCCCATGAACCAAC 59.528 52.381 0.00 0.00 43.48 3.77
2738 4047 1.824852 GGTCATTCCCATGAACCAACC 59.175 52.381 0.00 0.00 40.85 3.77
2739 4048 1.472480 GTCATTCCCATGAACCAACCG 59.528 52.381 0.00 0.00 41.30 4.44
2740 4049 1.074727 TCATTCCCATGAACCAACCGT 59.925 47.619 0.00 0.00 36.41 4.83
2741 4050 1.202114 CATTCCCATGAACCAACCGTG 59.798 52.381 0.00 0.00 32.13 4.94
2742 4051 4.036426 CATTCCCATGAACCAACCGTGG 62.036 54.545 0.00 0.00 40.98 4.94
2757 4066 2.449518 TGGACTCCCCAAGCACCA 60.450 61.111 0.00 0.00 43.29 4.17
2758 4067 2.081787 TGGACTCCCCAAGCACCAA 61.082 57.895 0.00 0.00 43.29 3.67
2759 4068 1.303643 GGACTCCCCAAGCACCAAG 60.304 63.158 0.00 0.00 34.14 3.61
2760 4069 1.456287 GACTCCCCAAGCACCAAGT 59.544 57.895 0.00 0.00 0.00 3.16
2761 4070 0.890996 GACTCCCCAAGCACCAAGTG 60.891 60.000 0.00 0.00 36.51 3.16
2762 4071 1.604593 CTCCCCAAGCACCAAGTGG 60.605 63.158 0.00 0.00 42.17 4.00
2763 4072 2.067932 CTCCCCAAGCACCAAGTGGA 62.068 60.000 3.83 0.00 38.94 4.02
2764 4073 1.604593 CCCCAAGCACCAAGTGGAG 60.605 63.158 3.83 0.00 38.94 3.86
2772 4081 1.901591 CACCAAGTGGAGCAATGACT 58.098 50.000 3.83 0.00 38.94 3.41
2773 4082 3.057969 CACCAAGTGGAGCAATGACTA 57.942 47.619 3.83 0.00 38.94 2.59
2774 4083 3.005554 CACCAAGTGGAGCAATGACTAG 58.994 50.000 3.83 0.00 38.94 2.57
2775 4084 2.906389 ACCAAGTGGAGCAATGACTAGA 59.094 45.455 3.83 0.00 38.94 2.43
2776 4085 3.055530 ACCAAGTGGAGCAATGACTAGAG 60.056 47.826 3.83 0.00 38.94 2.43
2777 4086 3.055530 CCAAGTGGAGCAATGACTAGAGT 60.056 47.826 0.00 0.00 37.39 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.486497 CATGTACAATGCTTGATAAGATAGTCT 57.514 33.333 0.00 0.00 0.00 3.24
59 60 8.226448 GCATGTACAATGCTTGATAAGATAGTC 58.774 37.037 17.63 0.00 41.52 2.59
60 61 7.173907 GGCATGTACAATGCTTGATAAGATAGT 59.826 37.037 21.55 0.00 44.02 2.12
61 62 7.361542 GGGCATGTACAATGCTTGATAAGATAG 60.362 40.741 21.55 0.00 44.02 2.08
62 63 6.430925 GGGCATGTACAATGCTTGATAAGATA 59.569 38.462 21.55 0.00 44.02 1.98
63 64 5.242393 GGGCATGTACAATGCTTGATAAGAT 59.758 40.000 21.55 0.00 44.02 2.40
64 65 4.580167 GGGCATGTACAATGCTTGATAAGA 59.420 41.667 21.55 0.00 44.02 2.10
65 66 4.581824 AGGGCATGTACAATGCTTGATAAG 59.418 41.667 21.55 0.00 44.02 1.73
66 67 4.535781 AGGGCATGTACAATGCTTGATAA 58.464 39.130 21.55 0.00 44.02 1.75
67 68 4.169059 AGGGCATGTACAATGCTTGATA 57.831 40.909 21.55 0.00 44.02 2.15
68 69 3.022557 AGGGCATGTACAATGCTTGAT 57.977 42.857 21.55 9.16 44.02 2.57
69 70 2.512692 AGGGCATGTACAATGCTTGA 57.487 45.000 21.55 0.00 44.02 3.02
70 71 4.717233 TTAAGGGCATGTACAATGCTTG 57.283 40.909 21.55 8.99 44.02 4.01
71 72 4.342092 GGATTAAGGGCATGTACAATGCTT 59.658 41.667 21.55 14.86 44.02 3.91
72 73 3.891366 GGATTAAGGGCATGTACAATGCT 59.109 43.478 21.55 10.74 44.02 3.79
73 74 3.005791 GGGATTAAGGGCATGTACAATGC 59.994 47.826 17.01 17.01 43.85 3.56
74 75 3.573967 GGGGATTAAGGGCATGTACAATG 59.426 47.826 0.00 0.12 0.00 2.82
75 76 3.437931 GGGGGATTAAGGGCATGTACAAT 60.438 47.826 0.00 0.00 0.00 2.71
76 77 2.091555 GGGGGATTAAGGGCATGTACAA 60.092 50.000 0.00 0.00 0.00 2.41
77 78 1.497286 GGGGGATTAAGGGCATGTACA 59.503 52.381 0.00 0.00 0.00 2.90
78 79 1.544759 CGGGGGATTAAGGGCATGTAC 60.545 57.143 0.00 0.00 0.00 2.90
79 80 0.768622 CGGGGGATTAAGGGCATGTA 59.231 55.000 0.00 0.00 0.00 2.29
80 81 1.536676 CGGGGGATTAAGGGCATGT 59.463 57.895 0.00 0.00 0.00 3.21
81 82 1.903404 GCGGGGGATTAAGGGCATG 60.903 63.158 0.00 0.00 0.00 4.06
82 83 1.729267 ATGCGGGGGATTAAGGGCAT 61.729 55.000 0.00 0.00 36.38 4.40
83 84 2.351924 GATGCGGGGGATTAAGGGCA 62.352 60.000 0.00 0.00 34.60 5.36
84 85 1.603739 GATGCGGGGGATTAAGGGC 60.604 63.158 0.00 0.00 0.00 5.19
85 86 1.074951 GGATGCGGGGGATTAAGGG 59.925 63.158 0.00 0.00 0.00 3.95
86 87 1.358152 TAGGATGCGGGGGATTAAGG 58.642 55.000 0.00 0.00 0.00 2.69
87 88 2.092914 GGATAGGATGCGGGGGATTAAG 60.093 54.545 0.00 0.00 0.00 1.85
88 89 1.913419 GGATAGGATGCGGGGGATTAA 59.087 52.381 0.00 0.00 0.00 1.40
89 90 1.080498 AGGATAGGATGCGGGGGATTA 59.920 52.381 0.00 0.00 0.00 1.75
90 91 0.178861 AGGATAGGATGCGGGGGATT 60.179 55.000 0.00 0.00 0.00 3.01
91 92 0.716591 TAGGATAGGATGCGGGGGAT 59.283 55.000 0.00 0.00 0.00 3.85
92 93 0.716591 ATAGGATAGGATGCGGGGGA 59.283 55.000 0.00 0.00 0.00 4.81
93 94 1.123928 GATAGGATAGGATGCGGGGG 58.876 60.000 0.00 0.00 0.00 5.40
94 95 1.123928 GGATAGGATAGGATGCGGGG 58.876 60.000 0.00 0.00 0.00 5.73
95 96 0.747255 CGGATAGGATAGGATGCGGG 59.253 60.000 0.00 0.00 33.76 6.13
96 97 1.763968 TCGGATAGGATAGGATGCGG 58.236 55.000 0.00 0.00 37.48 5.69
97 98 5.465051 CATATTCGGATAGGATAGGATGCG 58.535 45.833 0.00 0.00 38.14 4.73
98 99 5.011533 AGCATATTCGGATAGGATAGGATGC 59.988 44.000 0.00 0.00 0.00 3.91
99 100 6.662865 AGCATATTCGGATAGGATAGGATG 57.337 41.667 0.00 0.00 0.00 3.51
100 101 8.811017 CATTAGCATATTCGGATAGGATAGGAT 58.189 37.037 0.00 0.00 0.00 3.24
101 102 7.233553 CCATTAGCATATTCGGATAGGATAGGA 59.766 40.741 0.00 0.00 0.00 2.94
102 103 7.233553 TCCATTAGCATATTCGGATAGGATAGG 59.766 40.741 0.00 0.00 0.00 2.57
103 104 8.183104 TCCATTAGCATATTCGGATAGGATAG 57.817 38.462 0.00 0.00 0.00 2.08
104 105 7.233553 CCTCCATTAGCATATTCGGATAGGATA 59.766 40.741 0.00 0.00 0.00 2.59
166 167 4.708726 GCATATGCTCCCACCAATTATC 57.291 45.455 20.64 0.00 38.21 1.75
181 182 2.427812 TGGTGTTGCATGGAAGCATATG 59.572 45.455 0.00 0.00 45.19 1.78
182 183 2.737544 TGGTGTTGCATGGAAGCATAT 58.262 42.857 0.00 0.00 45.19 1.78
183 184 2.212812 TGGTGTTGCATGGAAGCATA 57.787 45.000 0.00 0.00 45.19 3.14
311 315 7.728083 TGAAGGTGGATTTCCTTTTCTTTCATA 59.272 33.333 0.00 0.00 44.19 2.15
312 316 6.554605 TGAAGGTGGATTTCCTTTTCTTTCAT 59.445 34.615 0.00 0.00 44.19 2.57
369 373 5.244851 AGGTATCTCATGTACTGTATGCCTG 59.755 44.000 13.19 0.00 35.12 4.85
371 375 5.336849 GGAGGTATCTCATGTACTGTATGCC 60.337 48.000 5.14 2.96 41.69 4.40
372 376 5.243954 TGGAGGTATCTCATGTACTGTATGC 59.756 44.000 5.14 0.00 41.69 3.14
373 377 6.294787 GGTGGAGGTATCTCATGTACTGTATG 60.295 46.154 5.14 0.00 41.69 2.39
374 378 5.775701 GGTGGAGGTATCTCATGTACTGTAT 59.224 44.000 5.14 0.00 41.69 2.29
375 379 5.138276 GGTGGAGGTATCTCATGTACTGTA 58.862 45.833 5.14 0.00 41.69 2.74
376 380 3.961408 GGTGGAGGTATCTCATGTACTGT 59.039 47.826 5.14 0.00 41.69 3.55
377 381 3.004839 CGGTGGAGGTATCTCATGTACTG 59.995 52.174 5.14 0.00 41.69 2.74
378 382 3.223435 CGGTGGAGGTATCTCATGTACT 58.777 50.000 5.14 0.00 41.69 2.73
379 383 2.296471 CCGGTGGAGGTATCTCATGTAC 59.704 54.545 5.14 0.00 41.69 2.90
404 408 1.479323 CAACTTGGTACGCCTAGGCTA 59.521 52.381 30.55 18.55 41.06 3.93
420 424 6.150809 GCCACTGAAGTACTACTACTACAACT 59.849 42.308 0.00 0.00 32.46 3.16
421 425 6.072286 TGCCACTGAAGTACTACTACTACAAC 60.072 42.308 0.00 0.00 32.46 3.32
422 426 6.005823 TGCCACTGAAGTACTACTACTACAA 58.994 40.000 0.00 0.00 32.46 2.41
423 427 5.563592 TGCCACTGAAGTACTACTACTACA 58.436 41.667 0.00 0.00 32.46 2.74
424 428 6.696441 ATGCCACTGAAGTACTACTACTAC 57.304 41.667 0.00 0.00 32.46 2.73
425 429 6.888088 TCAATGCCACTGAAGTACTACTACTA 59.112 38.462 0.00 0.00 32.46 1.82
433 437 1.128692 GCGTCAATGCCACTGAAGTAC 59.871 52.381 0.00 0.00 0.00 2.73
506 518 9.196552 GTACTTATTAGACACGGTTTACAAACT 57.803 33.333 4.93 0.00 38.89 2.66
538 550 3.427773 GCACTTTGTACTACTCCTCCGAG 60.428 52.174 0.00 0.00 42.32 4.63
539 551 2.490903 GCACTTTGTACTACTCCTCCGA 59.509 50.000 0.00 0.00 0.00 4.55
540 552 2.731341 CGCACTTTGTACTACTCCTCCG 60.731 54.545 0.00 0.00 0.00 4.63
542 554 2.260481 GCGCACTTTGTACTACTCCTC 58.740 52.381 0.30 0.00 0.00 3.71
651 670 3.004315 TGGCTCCGCTTTTCTTTTTGTAG 59.996 43.478 0.00 0.00 0.00 2.74
681 705 1.520787 GTCCACGCAGTATTCCCGG 60.521 63.158 0.00 0.00 41.61 5.73
1025 1049 1.219393 GGGAAAGACGGAGGAGCAG 59.781 63.158 0.00 0.00 0.00 4.24
1035 1059 1.290134 AGATGGGAGGTGGGAAAGAC 58.710 55.000 0.00 0.00 0.00 3.01
1043 1067 0.034089 GGTGGGAAAGATGGGAGGTG 60.034 60.000 0.00 0.00 0.00 4.00
1242 1603 1.955080 GGAGAATACCAGACGTCCGAT 59.045 52.381 13.01 0.00 0.00 4.18
1637 1998 3.750373 GAGCAGCCCGGCCGATTTA 62.750 63.158 30.73 0.00 0.00 1.40
1728 2093 3.250744 TCGCTTCTCATAAACTCGTTGG 58.749 45.455 0.00 0.00 0.00 3.77
1738 2103 4.801330 TTGGTCTTTCTCGCTTCTCATA 57.199 40.909 0.00 0.00 0.00 2.15
1766 2143 6.130298 TGATTCTACAACAACAAACCACAG 57.870 37.500 0.00 0.00 0.00 3.66
1830 2211 2.991250 ACCATCTTCGGTTGAATCCTG 58.009 47.619 0.00 0.00 34.91 3.86
1861 2242 9.774742 GCCACAACAAACTAGAAAGAATAATAG 57.225 33.333 0.00 0.00 0.00 1.73
1862 2243 8.736244 GGCCACAACAAACTAGAAAGAATAATA 58.264 33.333 0.00 0.00 0.00 0.98
1863 2244 7.451566 AGGCCACAACAAACTAGAAAGAATAAT 59.548 33.333 5.01 0.00 0.00 1.28
1890 2271 6.573434 AGATGGGTCAGTTTTTGTTCTTTTC 58.427 36.000 0.00 0.00 0.00 2.29
1895 2276 5.519927 CACAAAGATGGGTCAGTTTTTGTTC 59.480 40.000 0.00 0.00 36.83 3.18
1943 2324 4.080919 AGCATACTCAGGTGAAATGCACTA 60.081 41.667 20.70 0.00 46.86 2.74
2042 2425 2.198334 AATTTCCCCAACCAAACCCA 57.802 45.000 0.00 0.00 0.00 4.51
2044 2427 5.717654 TCATACTAATTTCCCCAACCAAACC 59.282 40.000 0.00 0.00 0.00 3.27
2116 2504 9.965824 GTGTTTTAGCATATTTATGGCTGTTAT 57.034 29.630 0.00 0.00 34.32 1.89
2119 2507 7.403312 TGTGTTTTAGCATATTTATGGCTGT 57.597 32.000 0.00 0.00 34.32 4.40
2120 2508 8.136800 TGATGTGTTTTAGCATATTTATGGCTG 58.863 33.333 0.00 0.00 34.32 4.85
2132 2529 7.713073 TCGGATGTATATTGATGTGTTTTAGCA 59.287 33.333 0.00 0.00 0.00 3.49
2133 2530 8.083462 TCGGATGTATATTGATGTGTTTTAGC 57.917 34.615 0.00 0.00 0.00 3.09
2140 2537 9.949174 TTTTCAAATCGGATGTATATTGATGTG 57.051 29.630 3.61 1.60 0.00 3.21
2213 2613 8.677300 GCATATTTCTCATAAACTCAAACCTCA 58.323 33.333 0.00 0.00 0.00 3.86
2214 2614 8.897752 AGCATATTTCTCATAAACTCAAACCTC 58.102 33.333 0.00 0.00 0.00 3.85
2233 2633 6.068010 TCCCAACGAAATAATGGAGCATATT 58.932 36.000 0.00 0.00 36.27 1.28
2239 2639 2.618709 GCCTCCCAACGAAATAATGGAG 59.381 50.000 0.00 0.00 39.25 3.86
2295 2731 6.049955 TGAGAAGAAATTTCGTCCCATACT 57.950 37.500 24.63 9.92 36.53 2.12
2296 2732 6.737254 TTGAGAAGAAATTTCGTCCCATAC 57.263 37.500 24.63 14.29 36.53 2.39
2297 2733 6.940298 AGTTTGAGAAGAAATTTCGTCCCATA 59.060 34.615 24.63 14.92 36.53 2.74
2304 2740 4.676924 GTGGCAGTTTGAGAAGAAATTTCG 59.323 41.667 12.42 0.00 0.00 3.46
2387 2827 4.056125 CGGTCACTGCCAGCGAGA 62.056 66.667 0.00 0.00 36.89 4.04
2394 2834 3.134127 GATTGCCCGGTCACTGCC 61.134 66.667 0.00 0.00 0.00 4.85
2443 2883 3.814625 TGAATTTGAGTGCGGGCATATA 58.185 40.909 0.00 0.00 0.00 0.86
2447 3754 1.742831 GTATGAATTTGAGTGCGGGCA 59.257 47.619 0.00 0.00 0.00 5.36
2469 3776 5.050227 ACATTGTTTACATTGTTGCATGCAC 60.050 36.000 22.58 16.00 37.20 4.57
2605 3914 4.796231 CGGAGTCGGAGGGCAACG 62.796 72.222 0.00 0.00 37.60 4.10
2622 3931 2.969238 CGTGAGGATGCGGATGCC 60.969 66.667 4.46 1.00 41.78 4.40
2644 3953 1.078759 CTAGTTTCTCGTGCCTGCGG 61.079 60.000 0.00 0.00 0.00 5.69
2645 3954 1.687494 GCTAGTTTCTCGTGCCTGCG 61.687 60.000 0.00 0.00 0.00 5.18
2646 3955 1.687494 CGCTAGTTTCTCGTGCCTGC 61.687 60.000 0.00 0.00 0.00 4.85
2647 3956 0.109272 TCGCTAGTTTCTCGTGCCTG 60.109 55.000 0.00 0.00 0.00 4.85
2648 3957 0.818296 ATCGCTAGTTTCTCGTGCCT 59.182 50.000 0.00 0.00 0.00 4.75
2649 3958 0.924090 CATCGCTAGTTTCTCGTGCC 59.076 55.000 0.00 0.00 0.00 5.01
2650 3959 0.299003 GCATCGCTAGTTTCTCGTGC 59.701 55.000 0.00 0.00 0.00 5.34
2651 3960 0.924090 GGCATCGCTAGTTTCTCGTG 59.076 55.000 0.00 0.00 0.00 4.35
2652 3961 0.179108 GGGCATCGCTAGTTTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
2653 3962 1.209275 CGGGCATCGCTAGTTTCTCG 61.209 60.000 0.00 0.00 0.00 4.04
2654 3963 0.876342 CCGGGCATCGCTAGTTTCTC 60.876 60.000 0.00 0.00 37.59 2.87
2655 3964 1.144057 CCGGGCATCGCTAGTTTCT 59.856 57.895 0.00 0.00 37.59 2.52
2656 3965 1.887707 CCCGGGCATCGCTAGTTTC 60.888 63.158 8.08 0.00 37.59 2.78
2657 3966 2.189521 CCCGGGCATCGCTAGTTT 59.810 61.111 8.08 0.00 37.59 2.66
2658 3967 4.547367 GCCCGGGCATCGCTAGTT 62.547 66.667 40.73 0.00 41.49 2.24
2675 3984 4.834453 CCTCCTGCGCCAGCTCTG 62.834 72.222 4.18 0.00 45.42 3.35
2680 3989 4.479993 CTTCCCCTCCTGCGCCAG 62.480 72.222 4.18 1.92 0.00 4.85
2684 3993 4.101448 CACCCTTCCCCTCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2685 3994 2.003548 ATCACCCTTCCCCTCCTGC 61.004 63.158 0.00 0.00 0.00 4.85
2686 3995 1.918253 CATCACCCTTCCCCTCCTG 59.082 63.158 0.00 0.00 0.00 3.86
2687 3996 2.003548 GCATCACCCTTCCCCTCCT 61.004 63.158 0.00 0.00 0.00 3.69
2688 3997 2.597903 GCATCACCCTTCCCCTCC 59.402 66.667 0.00 0.00 0.00 4.30
2689 3998 2.190578 CGCATCACCCTTCCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
2690 3999 3.411517 CCGCATCACCCTTCCCCT 61.412 66.667 0.00 0.00 0.00 4.79
2691 4000 3.406595 CTCCGCATCACCCTTCCCC 62.407 68.421 0.00 0.00 0.00 4.81
2692 4001 2.190578 CTCCGCATCACCCTTCCC 59.809 66.667 0.00 0.00 0.00 3.97
2693 4002 2.514824 GCTCCGCATCACCCTTCC 60.515 66.667 0.00 0.00 0.00 3.46
2694 4003 2.268920 TGCTCCGCATCACCCTTC 59.731 61.111 0.00 0.00 31.71 3.46
2705 4014 2.593468 AATGACCGTGGGATGCTCCG 62.593 60.000 0.00 0.00 37.43 4.63
2706 4015 0.815615 GAATGACCGTGGGATGCTCC 60.816 60.000 0.00 0.00 35.23 4.70
2707 4016 0.815615 GGAATGACCGTGGGATGCTC 60.816 60.000 0.00 0.00 0.00 4.26
2708 4017 1.224592 GGAATGACCGTGGGATGCT 59.775 57.895 0.00 0.00 0.00 3.79
2709 4018 1.823899 GGGAATGACCGTGGGATGC 60.824 63.158 0.00 0.00 40.11 3.91
2710 4019 0.183492 ATGGGAATGACCGTGGGATG 59.817 55.000 0.00 0.00 40.11 3.51
2711 4020 0.183492 CATGGGAATGACCGTGGGAT 59.817 55.000 0.00 0.00 42.58 3.85
2712 4021 0.912006 TCATGGGAATGACCGTGGGA 60.912 55.000 7.96 0.00 45.59 4.37
2713 4022 0.034574 TTCATGGGAATGACCGTGGG 60.035 55.000 7.96 0.00 45.59 4.61
2714 4023 1.094785 GTTCATGGGAATGACCGTGG 58.905 55.000 7.96 0.00 45.59 4.94
2715 4024 1.094785 GGTTCATGGGAATGACCGTG 58.905 55.000 0.00 0.00 46.66 4.94
2716 4025 0.695924 TGGTTCATGGGAATGACCGT 59.304 50.000 0.00 0.00 40.11 4.83
2717 4026 1.472480 GTTGGTTCATGGGAATGACCG 59.528 52.381 0.00 0.00 40.11 4.79
2718 4027 1.824852 GGTTGGTTCATGGGAATGACC 59.175 52.381 0.00 0.00 35.05 4.02
2719 4028 1.472480 CGGTTGGTTCATGGGAATGAC 59.528 52.381 0.00 0.00 35.05 3.06
2720 4029 1.074727 ACGGTTGGTTCATGGGAATGA 59.925 47.619 0.00 0.00 35.05 2.57
2721 4030 1.202114 CACGGTTGGTTCATGGGAATG 59.798 52.381 0.00 0.00 35.05 2.67
2722 4031 1.544724 CACGGTTGGTTCATGGGAAT 58.455 50.000 0.00 0.00 35.05 3.01
2723 4032 0.538516 CCACGGTTGGTTCATGGGAA 60.539 55.000 0.00 0.00 38.23 3.97
2724 4033 1.074072 CCACGGTTGGTTCATGGGA 59.926 57.895 0.00 0.00 38.23 4.37
2725 4034 1.074072 TCCACGGTTGGTTCATGGG 59.926 57.895 0.00 0.00 44.35 4.00
2726 4035 0.250727 AGTCCACGGTTGGTTCATGG 60.251 55.000 0.00 0.00 44.35 3.66
2727 4036 1.156736 GAGTCCACGGTTGGTTCATG 58.843 55.000 0.00 0.00 44.35 3.07
2728 4037 0.036306 GGAGTCCACGGTTGGTTCAT 59.964 55.000 3.60 0.00 44.35 2.57
2729 4038 1.448497 GGAGTCCACGGTTGGTTCA 59.552 57.895 3.60 0.00 44.35 3.18
2730 4039 1.302271 GGGAGTCCACGGTTGGTTC 60.302 63.158 12.30 0.00 44.35 3.62
2731 4040 2.826003 GGGGAGTCCACGGTTGGTT 61.826 63.158 12.30 0.00 44.35 3.67
2732 4041 3.246880 GGGGAGTCCACGGTTGGT 61.247 66.667 12.30 0.00 44.35 3.67
2733 4042 3.246112 TGGGGAGTCCACGGTTGG 61.246 66.667 12.30 0.00 45.56 3.77
2740 4049 2.067932 CTTGGTGCTTGGGGAGTCCA 62.068 60.000 12.30 0.00 45.43 4.02
2741 4050 1.303643 CTTGGTGCTTGGGGAGTCC 60.304 63.158 0.00 0.00 0.00 3.85
2742 4051 0.890996 CACTTGGTGCTTGGGGAGTC 60.891 60.000 0.00 0.00 0.00 3.36
2743 4052 1.151450 CACTTGGTGCTTGGGGAGT 59.849 57.895 0.00 0.00 0.00 3.85
2744 4053 1.604593 CCACTTGGTGCTTGGGGAG 60.605 63.158 0.00 0.00 31.34 4.30
2745 4054 2.067932 CTCCACTTGGTGCTTGGGGA 62.068 60.000 0.00 0.00 31.84 4.81
2746 4055 1.604593 CTCCACTTGGTGCTTGGGG 60.605 63.158 0.00 0.00 36.34 4.96
2747 4056 4.085876 CTCCACTTGGTGCTTGGG 57.914 61.111 0.00 0.00 36.34 4.12
2753 4062 1.901591 AGTCATTGCTCCACTTGGTG 58.098 50.000 0.00 0.00 36.34 4.17
2754 4063 2.906389 TCTAGTCATTGCTCCACTTGGT 59.094 45.455 0.00 0.00 36.34 3.67
2755 4064 3.055530 ACTCTAGTCATTGCTCCACTTGG 60.056 47.826 0.00 0.00 0.00 3.61
2756 4065 4.199432 ACTCTAGTCATTGCTCCACTTG 57.801 45.455 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.