Multiple sequence alignment - TraesCS2B01G247800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G247800 chr2B 100.000 2595 0 0 1 2595 254329978 254327384 0.000000e+00 4793
1 TraesCS2B01G247800 chr2B 83.502 594 73 12 1 569 9215895 9215302 4.920000e-147 531
2 TraesCS2B01G247800 chr2B 81.650 594 84 13 1 569 132520560 132519967 1.090000e-128 470
3 TraesCS2B01G247800 chr2B 81.895 591 76 14 1 563 453072429 453073016 1.090000e-128 470
4 TraesCS2B01G247800 chr2B 81.313 594 77 12 1 563 134566804 134567394 3.940000e-123 451
5 TraesCS2B01G247800 chr2D 93.472 965 30 9 721 1660 196891659 196890703 0.000000e+00 1402
6 TraesCS2B01G247800 chr2D 85.440 364 30 11 2227 2587 196890566 196890223 8.830000e-95 357
7 TraesCS2B01G247800 chr2D 92.929 99 4 2 2129 2225 196890710 196890613 9.680000e-30 141
8 TraesCS2B01G247800 chr2D 81.481 135 16 6 582 710 196891828 196891697 4.570000e-18 102
9 TraesCS2B01G247800 chr2A 93.125 800 35 8 721 1501 213414178 213413380 0.000000e+00 1155
10 TraesCS2B01G247800 chr2A 94.904 471 18 3 1660 2128 36046025 36046491 0.000000e+00 732
11 TraesCS2B01G247800 chr2A 82.447 376 46 14 2229 2587 213413022 213412650 6.970000e-81 311
12 TraesCS2B01G247800 chr2A 89.691 97 8 1 2129 2225 213413165 213413071 3.510000e-24 122
13 TraesCS2B01G247800 chr2A 82.222 135 19 4 577 708 213414350 213414218 7.590000e-21 111
14 TraesCS2B01G247800 chr2A 95.455 66 3 0 1595 1660 213413223 213413158 3.530000e-19 106
15 TraesCS2B01G247800 chr5B 96.581 468 16 0 1661 2128 466220827 466220360 0.000000e+00 776
16 TraesCS2B01G247800 chr5B 95.127 472 18 2 1658 2128 386559314 386559781 0.000000e+00 739
17 TraesCS2B01G247800 chr4B 95.117 471 20 1 1659 2129 273452595 273452128 0.000000e+00 739
18 TraesCS2B01G247800 chr3B 95.075 467 18 1 1662 2128 638037767 638037306 0.000000e+00 730
19 TraesCS2B01G247800 chr3B 86.565 588 54 10 1 563 762955252 762954665 2.190000e-175 625
20 TraesCS2B01G247800 chr3A 94.894 470 19 2 1661 2129 28571843 28571378 0.000000e+00 730
21 TraesCS2B01G247800 chr1B 94.715 473 20 2 1658 2129 647530684 647531152 0.000000e+00 730
22 TraesCS2B01G247800 chr7B 94.883 469 19 2 1661 2128 705810454 705810918 0.000000e+00 728
23 TraesCS2B01G247800 chr7B 80.880 591 82 16 1 563 718824071 718824658 1.100000e-118 436
24 TraesCS2B01G247800 chr4A 94.703 472 19 4 1659 2128 740020466 740020933 0.000000e+00 728
25 TraesCS2B01G247800 chr4A 81.387 591 79 12 1 563 598444210 598443623 1.090000e-123 453
26 TraesCS2B01G247800 chr7A 81.049 591 81 16 1 563 73769364 73769951 2.370000e-120 442
27 TraesCS2B01G247800 chr1A 81.049 591 81 12 1 563 308803767 308804354 2.370000e-120 442
28 TraesCS2B01G247800 chr1A 80.880 591 82 16 1 563 9150465 9149878 1.100000e-118 436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G247800 chr2B 254327384 254329978 2594 True 4793.0 4793 100.0000 1 2595 1 chr2B.!!$R3 2594
1 TraesCS2B01G247800 chr2B 9215302 9215895 593 True 531.0 531 83.5020 1 569 1 chr2B.!!$R1 568
2 TraesCS2B01G247800 chr2B 132519967 132520560 593 True 470.0 470 81.6500 1 569 1 chr2B.!!$R2 568
3 TraesCS2B01G247800 chr2B 453072429 453073016 587 False 470.0 470 81.8950 1 563 1 chr2B.!!$F2 562
4 TraesCS2B01G247800 chr2B 134566804 134567394 590 False 451.0 451 81.3130 1 563 1 chr2B.!!$F1 562
5 TraesCS2B01G247800 chr2D 196890223 196891828 1605 True 500.5 1402 88.3305 582 2587 4 chr2D.!!$R1 2005
6 TraesCS2B01G247800 chr2A 213412650 213414350 1700 True 361.0 1155 88.5880 577 2587 5 chr2A.!!$R1 2010
7 TraesCS2B01G247800 chr3B 762954665 762955252 587 True 625.0 625 86.5650 1 563 1 chr3B.!!$R2 562
8 TraesCS2B01G247800 chr7B 718824071 718824658 587 False 436.0 436 80.8800 1 563 1 chr7B.!!$F2 562
9 TraesCS2B01G247800 chr4A 598443623 598444210 587 True 453.0 453 81.3870 1 563 1 chr4A.!!$R1 562
10 TraesCS2B01G247800 chr7A 73769364 73769951 587 False 442.0 442 81.0490 1 563 1 chr7A.!!$F1 562
11 TraesCS2B01G247800 chr1A 308803767 308804354 587 False 442.0 442 81.0490 1 563 1 chr1A.!!$F1 562
12 TraesCS2B01G247800 chr1A 9149878 9150465 587 True 436.0 436 80.8800 1 563 1 chr1A.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 624 0.530744 TCGCCGTGAAAGTGATAGCT 59.469 50.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2105 0.037046 CAGCAGGCCAAAATCAACCC 60.037 55.0 5.01 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.441311 CACCAACAGGCCCACAAAC 59.559 57.895 0.00 0.00 0.00 2.93
318 365 1.964608 CTTGCTCAGATGCCCCGAGA 61.965 60.000 0.00 0.00 0.00 4.04
526 573 1.400530 CCCTAGTCACCGGATCCACC 61.401 65.000 9.46 0.00 0.00 4.61
548 595 1.791103 CTCCTCATCCTCCGACTCGC 61.791 65.000 0.00 0.00 0.00 5.03
569 616 2.787249 CAGCCATCGCCGTGAAAG 59.213 61.111 0.00 0.00 34.57 2.62
570 617 2.034879 CAGCCATCGCCGTGAAAGT 61.035 57.895 0.00 0.00 34.57 2.66
571 618 2.034879 AGCCATCGCCGTGAAAGTG 61.035 57.895 0.00 0.00 34.57 3.16
572 619 2.032634 GCCATCGCCGTGAAAGTGA 61.033 57.895 0.00 0.00 0.00 3.41
573 620 1.369091 GCCATCGCCGTGAAAGTGAT 61.369 55.000 0.00 0.00 34.86 3.06
574 621 1.934589 CCATCGCCGTGAAAGTGATA 58.065 50.000 0.00 0.00 33.26 2.15
575 622 1.860950 CCATCGCCGTGAAAGTGATAG 59.139 52.381 0.00 0.00 33.26 2.08
576 623 1.258982 CATCGCCGTGAAAGTGATAGC 59.741 52.381 0.00 0.00 33.26 2.97
577 624 0.530744 TCGCCGTGAAAGTGATAGCT 59.469 50.000 0.00 0.00 0.00 3.32
578 625 1.746787 TCGCCGTGAAAGTGATAGCTA 59.253 47.619 0.00 0.00 0.00 3.32
579 626 1.852895 CGCCGTGAAAGTGATAGCTAC 59.147 52.381 0.00 0.00 0.00 3.58
580 627 1.852895 GCCGTGAAAGTGATAGCTACG 59.147 52.381 0.00 0.00 0.00 3.51
581 628 2.734492 GCCGTGAAAGTGATAGCTACGT 60.734 50.000 0.00 0.00 0.00 3.57
582 629 3.488047 GCCGTGAAAGTGATAGCTACGTA 60.488 47.826 0.00 0.00 0.00 3.57
583 630 4.792057 GCCGTGAAAGTGATAGCTACGTAT 60.792 45.833 0.00 0.00 0.00 3.06
584 631 5.279384 CCGTGAAAGTGATAGCTACGTATT 58.721 41.667 0.00 0.00 0.00 1.89
585 632 6.432936 CCGTGAAAGTGATAGCTACGTATTA 58.567 40.000 0.00 0.00 0.00 0.98
586 633 6.914215 CCGTGAAAGTGATAGCTACGTATTAA 59.086 38.462 0.00 0.00 0.00 1.40
613 660 4.044946 TCATGGTCCATCATTTTGGTCA 57.955 40.909 0.00 0.00 38.01 4.02
615 662 5.024785 TCATGGTCCATCATTTTGGTCAAT 58.975 37.500 0.00 0.00 38.01 2.57
631 678 3.694566 GGTCAATCCAGCGAGGTTAATTT 59.305 43.478 0.00 0.00 39.02 1.82
632 679 4.438744 GGTCAATCCAGCGAGGTTAATTTG 60.439 45.833 0.00 0.00 39.02 2.32
634 681 2.489938 TCCAGCGAGGTTAATTTGCT 57.510 45.000 0.00 0.18 39.02 3.91
638 685 2.778299 AGCGAGGTTAATTTGCTGACA 58.222 42.857 4.40 0.00 34.04 3.58
639 686 3.146066 AGCGAGGTTAATTTGCTGACAA 58.854 40.909 4.40 0.00 34.04 3.18
640 687 3.189287 AGCGAGGTTAATTTGCTGACAAG 59.811 43.478 4.40 0.00 37.04 3.16
641 688 3.188460 GCGAGGTTAATTTGCTGACAAGA 59.812 43.478 0.00 0.00 37.04 3.02
642 689 4.142600 GCGAGGTTAATTTGCTGACAAGAT 60.143 41.667 0.00 0.00 37.04 2.40
643 690 5.327091 CGAGGTTAATTTGCTGACAAGATG 58.673 41.667 0.00 0.00 37.04 2.90
644 691 5.106555 CGAGGTTAATTTGCTGACAAGATGT 60.107 40.000 0.00 0.00 37.04 3.06
645 692 6.017400 AGGTTAATTTGCTGACAAGATGTG 57.983 37.500 0.00 0.00 37.04 3.21
646 693 5.536161 AGGTTAATTTGCTGACAAGATGTGT 59.464 36.000 0.00 0.00 45.74 3.72
649 696 7.865385 GGTTAATTTGCTGACAAGATGTGTAAA 59.135 33.333 0.00 0.00 41.96 2.01
650 697 9.410556 GTTAATTTGCTGACAAGATGTGTAAAT 57.589 29.630 0.00 0.00 41.96 1.40
654 701 9.630098 ATTTGCTGACAAGATGTGTAAATAAAG 57.370 29.630 0.00 0.00 41.96 1.85
655 702 6.611381 TGCTGACAAGATGTGTAAATAAAGC 58.389 36.000 0.00 0.00 41.96 3.51
656 703 6.430925 TGCTGACAAGATGTGTAAATAAAGCT 59.569 34.615 0.00 0.00 41.96 3.74
658 705 7.573843 GCTGACAAGATGTGTAAATAAAGCTGT 60.574 37.037 0.00 0.00 41.96 4.40
659 706 8.840833 TGACAAGATGTGTAAATAAAGCTGTA 57.159 30.769 0.00 0.00 41.96 2.74
660 707 9.278978 TGACAAGATGTGTAAATAAAGCTGTAA 57.721 29.630 0.00 0.00 41.96 2.41
670 721 8.104566 TGTAAATAAAGCTGTAAAAGAGCCCTA 58.895 33.333 0.00 0.00 37.12 3.53
710 761 7.174946 ACGAGATTAACAATGACAAATCACCTT 59.825 33.333 0.00 0.00 37.79 3.50
738 816 2.159156 TCACACGTTTACAGCTCACACT 60.159 45.455 0.00 0.00 0.00 3.55
803 886 1.211212 CCACTGCCAAGATCCATCTCA 59.789 52.381 0.00 0.00 35.76 3.27
841 924 2.100631 CACGGATCTCAACGCACCC 61.101 63.158 0.00 0.00 0.00 4.61
980 1063 1.142262 ACGCCTATAAATGTCCCCCAC 59.858 52.381 0.00 0.00 0.00 4.61
1064 1148 1.442520 CCAAACTGCGCACCGATTG 60.443 57.895 5.66 9.40 0.00 2.67
1075 1159 1.950484 GCACCGATTGTTGATCACCCT 60.950 52.381 0.00 0.00 34.23 4.34
1129 1213 1.037579 GCCCGCCTAGCCAAGAATTT 61.038 55.000 0.00 0.00 0.00 1.82
1221 1317 1.308326 CGGAGGAGGAGGAGGAAGT 59.692 63.158 0.00 0.00 0.00 3.01
1349 1451 1.514553 CTCCTCTGCATGACGAGCA 59.485 57.895 0.00 0.00 40.19 4.26
1481 1585 3.429272 CGGGCGGTGTATTTAGTTAGTCA 60.429 47.826 0.00 0.00 0.00 3.41
1482 1586 4.506758 GGGCGGTGTATTTAGTTAGTCAA 58.493 43.478 0.00 0.00 0.00 3.18
1509 1613 6.106673 ACTGGTGTGCTAGTGTATTATTGTC 58.893 40.000 0.00 0.00 35.02 3.18
1512 1616 7.109501 TGGTGTGCTAGTGTATTATTGTCATT 58.890 34.615 0.00 0.00 0.00 2.57
1513 1617 8.261522 TGGTGTGCTAGTGTATTATTGTCATTA 58.738 33.333 0.00 0.00 0.00 1.90
1514 1618 9.273016 GGTGTGCTAGTGTATTATTGTCATTAT 57.727 33.333 0.00 0.00 0.00 1.28
1628 1825 8.649810 ATTAAAGTAAATAAACTCGTTGTGCG 57.350 30.769 0.00 0.00 43.01 5.34
1680 1877 9.840427 AAATATCAATATTTTAAATAGCGCGCT 57.160 25.926 38.01 38.01 39.28 5.92
1682 1879 9.916397 ATATCAATATTTTAAATAGCGCGCTAC 57.084 29.630 40.42 8.79 0.00 3.58
1683 1880 7.179927 TCAATATTTTAAATAGCGCGCTACA 57.820 32.000 40.42 24.82 0.00 2.74
1684 1881 7.631822 TCAATATTTTAAATAGCGCGCTACAA 58.368 30.769 40.42 29.39 0.00 2.41
1685 1882 8.123575 TCAATATTTTAAATAGCGCGCTACAAA 58.876 29.630 40.42 32.46 0.00 2.83
1686 1883 8.738554 CAATATTTTAAATAGCGCGCTACAAAA 58.261 29.630 40.42 36.72 0.00 2.44
1687 1884 9.458374 AATATTTTAAATAGCGCGCTACAAAAT 57.542 25.926 38.12 38.12 35.03 1.82
1691 1888 9.588774 TTTTAAATAGCGCGCTACAAAATATAG 57.411 29.630 40.42 0.00 0.00 1.31
1692 1889 4.842139 ATAGCGCGCTACAAAATATAGC 57.158 40.909 40.42 2.19 41.43 2.97
1699 1896 2.742589 GCTACAAAATATAGCGAGGCCC 59.257 50.000 0.00 0.00 36.02 5.80
1700 1897 3.557264 GCTACAAAATATAGCGAGGCCCT 60.557 47.826 0.00 0.00 36.02 5.19
1701 1898 3.577805 ACAAAATATAGCGAGGCCCTT 57.422 42.857 0.00 0.00 0.00 3.95
1702 1899 3.477530 ACAAAATATAGCGAGGCCCTTC 58.522 45.455 0.00 0.00 0.00 3.46
1703 1900 3.136626 ACAAAATATAGCGAGGCCCTTCT 59.863 43.478 0.00 0.00 0.00 2.85
1704 1901 3.686916 AAATATAGCGAGGCCCTTCTC 57.313 47.619 0.00 0.00 0.00 2.87
1705 1902 2.614134 ATATAGCGAGGCCCTTCTCT 57.386 50.000 0.00 0.00 0.00 3.10
1706 1903 3.741245 ATATAGCGAGGCCCTTCTCTA 57.259 47.619 0.00 0.00 0.00 2.43
1707 1904 2.383442 ATAGCGAGGCCCTTCTCTAA 57.617 50.000 0.00 0.00 0.00 2.10
1708 1905 2.154567 TAGCGAGGCCCTTCTCTAAA 57.845 50.000 0.00 0.00 0.00 1.85
1709 1906 1.501582 AGCGAGGCCCTTCTCTAAAT 58.498 50.000 0.00 0.00 0.00 1.40
1710 1907 1.139853 AGCGAGGCCCTTCTCTAAATG 59.860 52.381 0.00 0.00 0.00 2.32
1711 1908 1.587547 CGAGGCCCTTCTCTAAATGC 58.412 55.000 0.00 0.00 0.00 3.56
1712 1909 1.139853 CGAGGCCCTTCTCTAAATGCT 59.860 52.381 0.00 0.00 0.00 3.79
1713 1910 2.365617 CGAGGCCCTTCTCTAAATGCTA 59.634 50.000 0.00 0.00 0.00 3.49
1714 1911 3.734463 GAGGCCCTTCTCTAAATGCTAC 58.266 50.000 0.00 0.00 0.00 3.58
1715 1912 3.115390 AGGCCCTTCTCTAAATGCTACA 58.885 45.455 0.00 0.00 0.00 2.74
1716 1913 3.118223 AGGCCCTTCTCTAAATGCTACAC 60.118 47.826 0.00 0.00 0.00 2.90
1717 1914 3.370527 GGCCCTTCTCTAAATGCTACACA 60.371 47.826 0.00 0.00 0.00 3.72
1718 1915 4.261801 GCCCTTCTCTAAATGCTACACAA 58.738 43.478 0.00 0.00 0.00 3.33
1719 1916 4.333926 GCCCTTCTCTAAATGCTACACAAG 59.666 45.833 0.00 0.00 0.00 3.16
1720 1917 5.491982 CCCTTCTCTAAATGCTACACAAGT 58.508 41.667 0.00 0.00 0.00 3.16
1721 1918 5.940470 CCCTTCTCTAAATGCTACACAAGTT 59.060 40.000 0.00 0.00 0.00 2.66
1722 1919 7.103641 CCCTTCTCTAAATGCTACACAAGTTA 58.896 38.462 0.00 0.00 0.00 2.24
1723 1920 7.770897 CCCTTCTCTAAATGCTACACAAGTTAT 59.229 37.037 0.00 0.00 0.00 1.89
1724 1921 9.817809 CCTTCTCTAAATGCTACACAAGTTATA 57.182 33.333 0.00 0.00 0.00 0.98
1726 1923 8.873215 TCTCTAAATGCTACACAAGTTATAGC 57.127 34.615 6.38 6.38 41.44 2.97
1727 1924 7.648112 TCTCTAAATGCTACACAAGTTATAGCG 59.352 37.037 8.10 0.00 43.53 4.26
1728 1925 4.795970 AATGCTACACAAGTTATAGCGC 57.204 40.909 0.00 0.00 43.53 5.92
1729 1926 2.190161 TGCTACACAAGTTATAGCGCG 58.810 47.619 0.00 0.00 43.53 6.86
1730 1927 1.071436 GCTACACAAGTTATAGCGCGC 60.071 52.381 26.66 26.66 32.61 6.86
1731 1928 2.460918 CTACACAAGTTATAGCGCGCT 58.539 47.619 38.01 38.01 0.00 5.92
1732 1929 2.572191 ACACAAGTTATAGCGCGCTA 57.428 45.000 39.72 39.72 0.00 4.26
1733 1930 2.883574 ACACAAGTTATAGCGCGCTAA 58.116 42.857 40.90 27.16 31.73 3.09
1734 1931 2.601763 ACACAAGTTATAGCGCGCTAAC 59.398 45.455 40.90 35.03 31.73 2.34
1735 1932 2.601314 CACAAGTTATAGCGCGCTAACA 59.399 45.455 40.90 29.06 31.64 2.41
1736 1933 2.858344 ACAAGTTATAGCGCGCTAACAG 59.142 45.455 40.90 31.23 31.64 3.16
1737 1934 1.488527 AGTTATAGCGCGCTAACAGC 58.511 50.000 40.90 30.83 38.02 4.40
1751 1948 5.403897 GCTAACAGCGTGCTATATTTCAA 57.596 39.130 0.00 0.00 0.00 2.69
1752 1949 5.806286 GCTAACAGCGTGCTATATTTCAAA 58.194 37.500 0.00 0.00 0.00 2.69
1753 1950 6.255215 GCTAACAGCGTGCTATATTTCAAAA 58.745 36.000 0.00 0.00 0.00 2.44
1754 1951 6.912591 GCTAACAGCGTGCTATATTTCAAAAT 59.087 34.615 0.00 0.00 0.00 1.82
1755 1952 8.067784 GCTAACAGCGTGCTATATTTCAAAATA 58.932 33.333 0.00 0.00 35.52 1.40
1756 1953 9.586150 CTAACAGCGTGCTATATTTCAAAATAG 57.414 33.333 0.00 0.00 34.62 1.73
1826 2023 9.855021 TTAAGCAACTAAATTTTTCATAGGAGC 57.145 29.630 0.00 0.00 0.00 4.70
1827 2024 7.466746 AGCAACTAAATTTTTCATAGGAGCA 57.533 32.000 0.00 0.00 0.00 4.26
1828 2025 7.895759 AGCAACTAAATTTTTCATAGGAGCAA 58.104 30.769 0.00 0.00 0.00 3.91
1829 2026 8.031277 AGCAACTAAATTTTTCATAGGAGCAAG 58.969 33.333 0.00 0.00 0.00 4.01
1830 2027 7.201470 GCAACTAAATTTTTCATAGGAGCAAGC 60.201 37.037 0.00 0.00 0.00 4.01
1831 2028 7.466746 ACTAAATTTTTCATAGGAGCAAGCA 57.533 32.000 0.00 0.00 0.00 3.91
1832 2029 7.895759 ACTAAATTTTTCATAGGAGCAAGCAA 58.104 30.769 0.00 0.00 0.00 3.91
1833 2030 8.534496 ACTAAATTTTTCATAGGAGCAAGCAAT 58.466 29.630 0.00 0.00 0.00 3.56
1861 2058 8.985315 ATGCATATGATAAAAGGAGTGAGAAA 57.015 30.769 6.97 0.00 0.00 2.52
1862 2059 8.442632 TGCATATGATAAAAGGAGTGAGAAAG 57.557 34.615 6.97 0.00 0.00 2.62
1863 2060 7.012704 TGCATATGATAAAAGGAGTGAGAAAGC 59.987 37.037 6.97 0.00 0.00 3.51
1864 2061 7.228308 GCATATGATAAAAGGAGTGAGAAAGCT 59.772 37.037 6.97 0.00 0.00 3.74
1865 2062 9.770097 CATATGATAAAAGGAGTGAGAAAGCTA 57.230 33.333 0.00 0.00 0.00 3.32
1866 2063 9.995003 ATATGATAAAAGGAGTGAGAAAGCTAG 57.005 33.333 0.00 0.00 0.00 3.42
1867 2064 7.246171 TGATAAAAGGAGTGAGAAAGCTAGT 57.754 36.000 0.00 0.00 0.00 2.57
1868 2065 7.099764 TGATAAAAGGAGTGAGAAAGCTAGTG 58.900 38.462 0.00 0.00 0.00 2.74
1869 2066 3.971245 AAGGAGTGAGAAAGCTAGTGG 57.029 47.619 0.00 0.00 0.00 4.00
1870 2067 2.183679 AGGAGTGAGAAAGCTAGTGGG 58.816 52.381 0.00 0.00 0.00 4.61
1871 2068 2.180276 GGAGTGAGAAAGCTAGTGGGA 58.820 52.381 0.00 0.00 0.00 4.37
1872 2069 2.167487 GGAGTGAGAAAGCTAGTGGGAG 59.833 54.545 0.00 0.00 0.00 4.30
1873 2070 3.093057 GAGTGAGAAAGCTAGTGGGAGA 58.907 50.000 0.00 0.00 0.00 3.71
1874 2071 3.511477 AGTGAGAAAGCTAGTGGGAGAA 58.489 45.455 0.00 0.00 0.00 2.87
1875 2072 4.100373 AGTGAGAAAGCTAGTGGGAGAAT 58.900 43.478 0.00 0.00 0.00 2.40
1876 2073 4.161377 AGTGAGAAAGCTAGTGGGAGAATC 59.839 45.833 0.00 0.00 0.00 2.52
1877 2074 4.161377 GTGAGAAAGCTAGTGGGAGAATCT 59.839 45.833 0.00 0.00 33.73 2.40
1878 2075 4.161189 TGAGAAAGCTAGTGGGAGAATCTG 59.839 45.833 0.00 0.00 33.73 2.90
1879 2076 4.357325 AGAAAGCTAGTGGGAGAATCTGA 58.643 43.478 0.00 0.00 33.73 3.27
1880 2077 4.968080 AGAAAGCTAGTGGGAGAATCTGAT 59.032 41.667 0.00 0.00 33.73 2.90
1881 2078 6.139671 AGAAAGCTAGTGGGAGAATCTGATA 58.860 40.000 0.00 0.00 33.73 2.15
1882 2079 6.613271 AGAAAGCTAGTGGGAGAATCTGATAA 59.387 38.462 0.00 0.00 33.73 1.75
1883 2080 6.814954 AAGCTAGTGGGAGAATCTGATAAA 57.185 37.500 0.00 0.00 33.73 1.40
1884 2081 6.814954 AGCTAGTGGGAGAATCTGATAAAA 57.185 37.500 0.00 0.00 33.73 1.52
1885 2082 6.825610 AGCTAGTGGGAGAATCTGATAAAAG 58.174 40.000 0.00 0.00 33.73 2.27
1886 2083 6.613271 AGCTAGTGGGAGAATCTGATAAAAGA 59.387 38.462 0.00 0.00 33.73 2.52
1887 2084 7.126421 AGCTAGTGGGAGAATCTGATAAAAGAA 59.874 37.037 0.00 0.00 33.73 2.52
1888 2085 7.440856 GCTAGTGGGAGAATCTGATAAAAGAAG 59.559 40.741 0.00 0.00 33.73 2.85
1889 2086 7.264294 AGTGGGAGAATCTGATAAAAGAAGT 57.736 36.000 0.00 0.00 33.73 3.01
1890 2087 7.108847 AGTGGGAGAATCTGATAAAAGAAGTG 58.891 38.462 0.00 0.00 33.73 3.16
1891 2088 7.038017 AGTGGGAGAATCTGATAAAAGAAGTGA 60.038 37.037 0.00 0.00 33.73 3.41
1892 2089 7.279758 GTGGGAGAATCTGATAAAAGAAGTGAG 59.720 40.741 0.00 0.00 33.73 3.51
1893 2090 7.180946 TGGGAGAATCTGATAAAAGAAGTGAGA 59.819 37.037 0.00 0.00 33.73 3.27
1894 2091 8.043710 GGGAGAATCTGATAAAAGAAGTGAGAA 58.956 37.037 0.00 0.00 33.73 2.87
1895 2092 9.442047 GGAGAATCTGATAAAAGAAGTGAGAAA 57.558 33.333 0.00 0.00 33.73 2.52
1897 2094 8.945057 AGAATCTGATAAAAGAAGTGAGAAAGC 58.055 33.333 0.00 0.00 0.00 3.51
1898 2095 8.860780 AATCTGATAAAAGAAGTGAGAAAGCT 57.139 30.769 0.00 0.00 0.00 3.74
1899 2096 9.950496 AATCTGATAAAAGAAGTGAGAAAGCTA 57.050 29.630 0.00 0.00 0.00 3.32
1900 2097 8.994429 TCTGATAAAAGAAGTGAGAAAGCTAG 57.006 34.615 0.00 0.00 0.00 3.42
1901 2098 8.589338 TCTGATAAAAGAAGTGAGAAAGCTAGT 58.411 33.333 0.00 0.00 0.00 2.57
1902 2099 8.539770 TGATAAAAGAAGTGAGAAAGCTAGTG 57.460 34.615 0.00 0.00 0.00 2.74
1903 2100 7.604164 TGATAAAAGAAGTGAGAAAGCTAGTGG 59.396 37.037 0.00 0.00 0.00 4.00
1904 2101 4.965200 AAGAAGTGAGAAAGCTAGTGGT 57.035 40.909 0.00 0.00 0.00 4.16
1905 2102 4.529109 AGAAGTGAGAAAGCTAGTGGTC 57.471 45.455 0.00 0.00 0.00 4.02
1906 2103 3.898123 AGAAGTGAGAAAGCTAGTGGTCA 59.102 43.478 0.00 0.00 0.00 4.02
1907 2104 4.530161 AGAAGTGAGAAAGCTAGTGGTCAT 59.470 41.667 0.00 0.00 0.00 3.06
1908 2105 4.199432 AGTGAGAAAGCTAGTGGTCATG 57.801 45.455 0.00 0.00 0.00 3.07
1909 2106 3.055530 AGTGAGAAAGCTAGTGGTCATGG 60.056 47.826 0.00 0.00 0.00 3.66
1910 2107 2.237143 TGAGAAAGCTAGTGGTCATGGG 59.763 50.000 0.00 0.00 0.00 4.00
1911 2108 2.237392 GAGAAAGCTAGTGGTCATGGGT 59.763 50.000 0.00 0.00 0.00 4.51
1912 2109 2.644798 AGAAAGCTAGTGGTCATGGGTT 59.355 45.455 0.00 0.00 0.00 4.11
1913 2110 2.496899 AAGCTAGTGGTCATGGGTTG 57.503 50.000 0.00 0.00 0.00 3.77
1914 2111 1.656587 AGCTAGTGGTCATGGGTTGA 58.343 50.000 0.00 0.00 0.00 3.18
1915 2112 2.200081 AGCTAGTGGTCATGGGTTGAT 58.800 47.619 0.00 0.00 36.54 2.57
1916 2113 2.578021 AGCTAGTGGTCATGGGTTGATT 59.422 45.455 0.00 0.00 36.54 2.57
1917 2114 3.010584 AGCTAGTGGTCATGGGTTGATTT 59.989 43.478 0.00 0.00 36.54 2.17
1918 2115 3.763897 GCTAGTGGTCATGGGTTGATTTT 59.236 43.478 0.00 0.00 36.54 1.82
1919 2116 4.380867 GCTAGTGGTCATGGGTTGATTTTG 60.381 45.833 0.00 0.00 36.54 2.44
1920 2117 2.899256 AGTGGTCATGGGTTGATTTTGG 59.101 45.455 0.00 0.00 36.54 3.28
1921 2118 1.622811 TGGTCATGGGTTGATTTTGGC 59.377 47.619 0.00 0.00 36.54 4.52
1922 2119 1.066215 GGTCATGGGTTGATTTTGGCC 60.066 52.381 0.00 0.00 36.54 5.36
1923 2120 1.901833 GTCATGGGTTGATTTTGGCCT 59.098 47.619 3.32 0.00 36.54 5.19
1924 2121 1.901159 TCATGGGTTGATTTTGGCCTG 59.099 47.619 3.32 0.00 0.00 4.85
1925 2122 0.614812 ATGGGTTGATTTTGGCCTGC 59.385 50.000 3.32 0.00 0.00 4.85
1926 2123 0.471591 TGGGTTGATTTTGGCCTGCT 60.472 50.000 3.32 0.00 0.00 4.24
1927 2124 0.037046 GGGTTGATTTTGGCCTGCTG 60.037 55.000 3.32 0.00 0.00 4.41
1928 2125 0.037046 GGTTGATTTTGGCCTGCTGG 60.037 55.000 3.32 5.03 0.00 4.85
1929 2126 0.037046 GTTGATTTTGGCCTGCTGGG 60.037 55.000 12.06 1.66 38.36 4.45
1947 2144 4.819783 CCTGTTGGGCTGTGCTTA 57.180 55.556 0.00 0.00 0.00 3.09
1948 2145 3.271250 CCTGTTGGGCTGTGCTTAT 57.729 52.632 0.00 0.00 0.00 1.73
1949 2146 1.549203 CCTGTTGGGCTGTGCTTATT 58.451 50.000 0.00 0.00 0.00 1.40
1950 2147 1.895131 CCTGTTGGGCTGTGCTTATTT 59.105 47.619 0.00 0.00 0.00 1.40
1951 2148 2.094545 CCTGTTGGGCTGTGCTTATTTC 60.095 50.000 0.00 0.00 0.00 2.17
1952 2149 2.557924 CTGTTGGGCTGTGCTTATTTCA 59.442 45.455 0.00 0.00 0.00 2.69
1953 2150 2.557924 TGTTGGGCTGTGCTTATTTCAG 59.442 45.455 0.00 0.00 0.00 3.02
1954 2151 2.558359 GTTGGGCTGTGCTTATTTCAGT 59.442 45.455 0.00 0.00 0.00 3.41
1955 2152 2.875296 TGGGCTGTGCTTATTTCAGTT 58.125 42.857 0.00 0.00 0.00 3.16
1956 2153 3.230134 TGGGCTGTGCTTATTTCAGTTT 58.770 40.909 0.00 0.00 0.00 2.66
1957 2154 3.640967 TGGGCTGTGCTTATTTCAGTTTT 59.359 39.130 0.00 0.00 0.00 2.43
1958 2155 3.989817 GGGCTGTGCTTATTTCAGTTTTG 59.010 43.478 0.00 0.00 0.00 2.44
1959 2156 3.429881 GGCTGTGCTTATTTCAGTTTTGC 59.570 43.478 0.00 0.00 0.00 3.68
1960 2157 4.050553 GCTGTGCTTATTTCAGTTTTGCA 58.949 39.130 0.00 0.00 0.00 4.08
1961 2158 4.687483 GCTGTGCTTATTTCAGTTTTGCAT 59.313 37.500 0.00 0.00 0.00 3.96
1962 2159 5.389098 GCTGTGCTTATTTCAGTTTTGCATG 60.389 40.000 0.00 0.00 0.00 4.06
1963 2160 5.840715 TGTGCTTATTTCAGTTTTGCATGA 58.159 33.333 0.00 0.00 0.00 3.07
1964 2161 6.457355 TGTGCTTATTTCAGTTTTGCATGAT 58.543 32.000 0.00 0.00 0.00 2.45
1965 2162 7.600960 TGTGCTTATTTCAGTTTTGCATGATA 58.399 30.769 0.00 0.00 0.00 2.15
1966 2163 8.252417 TGTGCTTATTTCAGTTTTGCATGATAT 58.748 29.630 0.00 0.00 0.00 1.63
1967 2164 8.537223 GTGCTTATTTCAGTTTTGCATGATATG 58.463 33.333 0.00 0.00 0.00 1.78
2007 2204 3.891583 CGTTACAACGTTATAGCGTGTG 58.108 45.455 15.60 16.16 46.63 3.82
2008 2205 3.361644 CGTTACAACGTTATAGCGTGTGT 59.638 43.478 22.53 22.53 46.63 3.72
2009 2206 4.553045 CGTTACAACGTTATAGCGTGTGTA 59.447 41.667 15.60 19.25 46.63 2.90
2010 2207 5.274959 CGTTACAACGTTATAGCGTGTGTAG 60.275 44.000 22.52 15.34 46.63 2.74
2011 2208 2.919229 ACAACGTTATAGCGTGTGTAGC 59.081 45.455 15.60 0.00 45.00 3.58
2012 2209 1.818850 ACGTTATAGCGTGTGTAGCG 58.181 50.000 14.14 0.00 43.99 4.26
2019 2216 3.688136 CGTGTGTAGCGCGCTAAT 58.312 55.556 39.73 19.77 44.35 1.73
2020 2217 1.995991 CGTGTGTAGCGCGCTAATT 59.004 52.632 39.73 19.37 44.35 1.40
2021 2218 1.193644 CGTGTGTAGCGCGCTAATTA 58.806 50.000 39.73 26.04 44.35 1.40
2022 2219 1.072348 CGTGTGTAGCGCGCTAATTAC 60.072 52.381 39.73 33.48 44.35 1.89
2023 2220 1.072348 GTGTGTAGCGCGCTAATTACG 60.072 52.381 39.73 0.00 0.00 3.18
2050 2247 3.877801 GCCGTAGCGTCTGATTTTG 57.122 52.632 0.00 0.00 0.00 2.44
2051 2248 0.247695 GCCGTAGCGTCTGATTTTGC 60.248 55.000 0.00 0.00 0.00 3.68
2052 2249 0.373716 CCGTAGCGTCTGATTTTGCC 59.626 55.000 0.00 0.00 0.00 4.52
2053 2250 1.075542 CGTAGCGTCTGATTTTGCCA 58.924 50.000 0.00 0.00 0.00 4.92
2054 2251 1.463056 CGTAGCGTCTGATTTTGCCAA 59.537 47.619 0.00 0.00 0.00 4.52
2055 2252 2.095969 CGTAGCGTCTGATTTTGCCAAA 60.096 45.455 0.00 0.00 0.00 3.28
2056 2253 3.608241 CGTAGCGTCTGATTTTGCCAAAA 60.608 43.478 4.87 4.87 34.41 2.44
2057 2254 2.742774 AGCGTCTGATTTTGCCAAAAC 58.257 42.857 4.45 0.64 32.37 2.43
2058 2255 1.451651 GCGTCTGATTTTGCCAAAACG 59.548 47.619 4.45 5.89 32.37 3.60
2059 2256 2.726633 CGTCTGATTTTGCCAAAACGT 58.273 42.857 4.45 0.00 32.37 3.99
2060 2257 3.850374 GCGTCTGATTTTGCCAAAACGTA 60.850 43.478 4.45 0.00 32.37 3.57
2061 2258 4.283678 CGTCTGATTTTGCCAAAACGTAA 58.716 39.130 4.45 0.00 32.37 3.18
2062 2259 4.145756 CGTCTGATTTTGCCAAAACGTAAC 59.854 41.667 4.45 1.66 32.37 2.50
2063 2260 4.145756 GTCTGATTTTGCCAAAACGTAACG 59.854 41.667 4.45 0.00 32.37 3.18
2064 2261 4.030134 TGATTTTGCCAAAACGTAACGT 57.970 36.364 4.45 0.00 43.97 3.99
2065 2262 4.036352 TGATTTTGCCAAAACGTAACGTC 58.964 39.130 4.45 0.00 39.99 4.34
2066 2263 3.761311 TTTTGCCAAAACGTAACGTCT 57.239 38.095 0.00 0.00 39.99 4.18
2067 2264 3.322230 TTTGCCAAAACGTAACGTCTC 57.678 42.857 0.00 0.00 39.99 3.36
2068 2265 1.219646 TGCCAAAACGTAACGTCTCC 58.780 50.000 0.00 0.00 39.99 3.71
2069 2266 1.202557 TGCCAAAACGTAACGTCTCCT 60.203 47.619 0.00 0.00 39.99 3.69
2070 2267 1.869132 GCCAAAACGTAACGTCTCCTT 59.131 47.619 0.00 0.00 39.99 3.36
2071 2268 2.288729 GCCAAAACGTAACGTCTCCTTT 59.711 45.455 0.00 0.00 39.99 3.11
2072 2269 3.605461 GCCAAAACGTAACGTCTCCTTTC 60.605 47.826 0.00 0.00 39.99 2.62
2073 2270 3.059393 CCAAAACGTAACGTCTCCTTTCC 60.059 47.826 0.00 0.00 39.99 3.13
2074 2271 3.457610 AAACGTAACGTCTCCTTTCCA 57.542 42.857 0.00 0.00 39.99 3.53
2075 2272 3.457610 AACGTAACGTCTCCTTTCCAA 57.542 42.857 0.00 0.00 39.99 3.53
2076 2273 3.457610 ACGTAACGTCTCCTTTCCAAA 57.542 42.857 0.00 0.00 33.69 3.28
2077 2274 3.999046 ACGTAACGTCTCCTTTCCAAAT 58.001 40.909 0.00 0.00 33.69 2.32
2078 2275 5.138125 ACGTAACGTCTCCTTTCCAAATA 57.862 39.130 0.00 0.00 33.69 1.40
2079 2276 5.727434 ACGTAACGTCTCCTTTCCAAATAT 58.273 37.500 0.00 0.00 33.69 1.28
2080 2277 5.579511 ACGTAACGTCTCCTTTCCAAATATG 59.420 40.000 0.00 0.00 33.69 1.78
2081 2278 4.965119 AACGTCTCCTTTCCAAATATGC 57.035 40.909 0.00 0.00 0.00 3.14
2082 2279 4.222124 ACGTCTCCTTTCCAAATATGCT 57.778 40.909 0.00 0.00 0.00 3.79
2083 2280 5.353394 ACGTCTCCTTTCCAAATATGCTA 57.647 39.130 0.00 0.00 0.00 3.49
2084 2281 5.930135 ACGTCTCCTTTCCAAATATGCTAT 58.070 37.500 0.00 0.00 0.00 2.97
2085 2282 7.062749 ACGTCTCCTTTCCAAATATGCTATA 57.937 36.000 0.00 0.00 0.00 1.31
2086 2283 7.506114 ACGTCTCCTTTCCAAATATGCTATAA 58.494 34.615 0.00 0.00 0.00 0.98
2087 2284 7.441458 ACGTCTCCTTTCCAAATATGCTATAAC 59.559 37.037 0.00 0.00 0.00 1.89
2088 2285 7.095187 CGTCTCCTTTCCAAATATGCTATAACC 60.095 40.741 0.00 0.00 0.00 2.85
2089 2286 6.934645 TCTCCTTTCCAAATATGCTATAACCG 59.065 38.462 0.00 0.00 0.00 4.44
2090 2287 5.472137 TCCTTTCCAAATATGCTATAACCGC 59.528 40.000 0.00 0.00 0.00 5.68
2091 2288 5.351233 TTTCCAAATATGCTATAACCGCG 57.649 39.130 0.00 0.00 0.00 6.46
2092 2289 3.997762 TCCAAATATGCTATAACCGCGT 58.002 40.909 4.92 0.00 0.00 6.01
2093 2290 4.382291 TCCAAATATGCTATAACCGCGTT 58.618 39.130 4.92 1.95 0.00 4.84
2094 2291 5.539979 TCCAAATATGCTATAACCGCGTTA 58.460 37.500 4.92 4.43 32.36 3.18
2095 2292 6.167685 TCCAAATATGCTATAACCGCGTTAT 58.832 36.000 4.92 11.68 41.02 1.89
2096 2293 7.321908 TCCAAATATGCTATAACCGCGTTATA 58.678 34.615 4.92 12.18 39.18 0.98
2097 2294 7.818446 TCCAAATATGCTATAACCGCGTTATAA 59.182 33.333 4.92 1.10 39.49 0.98
2098 2295 7.901377 CCAAATATGCTATAACCGCGTTATAAC 59.099 37.037 4.92 5.47 39.49 1.89
2113 2310 4.900664 GTTATAACGGCAAAATAGCGTGT 58.099 39.130 0.00 0.00 34.64 4.49
2114 2311 5.326292 GTTATAACGGCAAAATAGCGTGTT 58.674 37.500 0.00 0.00 37.48 3.32
2115 2312 6.476896 GTTATAACGGCAAAATAGCGTGTTA 58.523 36.000 0.00 0.00 39.03 2.41
2116 2313 5.744666 ATAACGGCAAAATAGCGTGTTAT 57.255 34.783 0.00 0.00 39.63 1.89
2117 2314 4.428615 AACGGCAAAATAGCGTGTTATT 57.571 36.364 0.00 0.00 33.75 1.40
2118 2315 4.428615 ACGGCAAAATAGCGTGTTATTT 57.571 36.364 0.00 0.00 35.35 1.40
2119 2316 5.548706 ACGGCAAAATAGCGTGTTATTTA 57.451 34.783 2.73 0.00 33.32 1.40
2120 2317 5.940595 ACGGCAAAATAGCGTGTTATTTAA 58.059 33.333 2.73 0.00 33.32 1.52
2121 2318 6.380190 ACGGCAAAATAGCGTGTTATTTAAA 58.620 32.000 2.73 0.00 33.32 1.52
2122 2319 6.862090 ACGGCAAAATAGCGTGTTATTTAAAA 59.138 30.769 2.73 0.00 33.32 1.52
2123 2320 7.542824 ACGGCAAAATAGCGTGTTATTTAAAAT 59.457 29.630 2.73 0.00 33.32 1.82
2124 2321 9.011407 CGGCAAAATAGCGTGTTATTTAAAATA 57.989 29.630 2.73 0.00 33.32 1.40
2175 2375 6.851222 ATGTAAATCGAGAATTGGTAGCTG 57.149 37.500 0.00 0.00 0.00 4.24
2181 2381 2.093447 CGAGAATTGGTAGCTGGGAAGT 60.093 50.000 0.00 0.00 0.00 3.01
2219 2419 5.653507 TCCATTGCTTGCTATGTTTGATTC 58.346 37.500 13.88 0.00 0.00 2.52
2225 2425 7.812690 TGCTTGCTATGTTTGATTCTGATAT 57.187 32.000 0.00 0.00 0.00 1.63
2231 2476 7.388776 TGCTATGTTTGATTCTGATATACTGGC 59.611 37.037 0.00 0.00 0.00 4.85
2318 2564 4.361451 CCATCTCGAGGGAATTTTGTTG 57.639 45.455 13.56 0.00 33.27 3.33
2342 2588 7.684670 TGAAAGAAAAATCGATCAAGATACCG 58.315 34.615 0.00 0.00 0.00 4.02
2343 2589 6.604735 AAGAAAAATCGATCAAGATACCGG 57.395 37.500 0.00 0.00 0.00 5.28
2346 2592 2.732412 ATCGATCAAGATACCGGCAG 57.268 50.000 0.00 0.00 0.00 4.85
2347 2593 0.673985 TCGATCAAGATACCGGCAGG 59.326 55.000 0.00 0.00 45.13 4.85
2349 2595 0.603975 GATCAAGATACCGGCAGGCC 60.604 60.000 0.00 0.00 42.76 5.19
2365 2612 3.672293 CCGAGTGGCATTGCAACT 58.328 55.556 18.64 18.64 46.61 3.16
2366 2613 2.853159 CCGAGTGGCATTGCAACTA 58.147 52.632 18.61 0.00 43.63 2.24
2367 2614 0.729116 CCGAGTGGCATTGCAACTAG 59.271 55.000 18.61 17.63 43.63 2.57
2368 2615 0.729116 CGAGTGGCATTGCAACTAGG 59.271 55.000 18.61 10.06 43.63 3.02
2369 2616 1.675714 CGAGTGGCATTGCAACTAGGA 60.676 52.381 18.61 0.00 43.63 2.94
2379 2653 6.183360 GGCATTGCAACTAGGAGTATGAAAAT 60.183 38.462 11.39 0.00 0.00 1.82
2404 2678 6.257849 TGAAGTAGGAGTAAAATTAGCATGCG 59.742 38.462 13.01 0.00 0.00 4.73
2415 2689 0.461870 TAGCATGCGGTAGTGGCTTG 60.462 55.000 13.01 0.00 38.26 4.01
2416 2690 2.764314 GCATGCGGTAGTGGCTTGG 61.764 63.158 0.00 0.00 36.42 3.61
2470 2745 0.109597 GTGTCTTGGGCAATTCAGCG 60.110 55.000 0.00 0.00 34.64 5.18
2476 2751 3.127533 GGCAATTCAGCGCCTCGT 61.128 61.111 2.29 0.00 45.29 4.18
2519 2794 1.709147 CTGCTATGCTGTTGCGGGAC 61.709 60.000 0.00 0.00 43.34 4.46
2584 2859 0.921347 CCGTAAGAGCGTTTCCGATG 59.079 55.000 0.00 0.00 43.02 3.84
2587 2862 2.529090 CGTAAGAGCGTTTCCGATGTAC 59.471 50.000 0.00 0.00 43.02 2.90
2588 2863 3.730061 CGTAAGAGCGTTTCCGATGTACT 60.730 47.826 0.00 0.00 43.02 2.73
2589 2864 2.563471 AGAGCGTTTCCGATGTACTC 57.437 50.000 0.00 0.00 35.63 2.59
2590 2865 1.134560 AGAGCGTTTCCGATGTACTCC 59.865 52.381 0.00 0.00 35.63 3.85
2591 2866 1.134560 GAGCGTTTCCGATGTACTCCT 59.865 52.381 0.00 0.00 35.63 3.69
2592 2867 1.549170 AGCGTTTCCGATGTACTCCTT 59.451 47.619 0.00 0.00 35.63 3.36
2593 2868 1.659098 GCGTTTCCGATGTACTCCTTG 59.341 52.381 0.00 0.00 35.63 3.61
2594 2869 2.673043 GCGTTTCCGATGTACTCCTTGA 60.673 50.000 0.00 0.00 35.63 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 1.668151 GTCCTGTTCGGCTGGTGTC 60.668 63.158 0.00 0.00 37.45 3.67
102 103 2.426023 GTCCTGTTCGGCTGGTGT 59.574 61.111 0.00 0.00 37.45 4.16
244 291 2.345991 GTGGAGTGGCCGTGCTTA 59.654 61.111 0.00 0.00 40.66 3.09
501 548 2.687902 CGGTGACTAGGGAGGGGA 59.312 66.667 0.00 0.00 0.00 4.81
526 573 0.184933 AGTCGGAGGATGAGGAGGAG 59.815 60.000 0.00 0.00 0.00 3.69
558 605 0.530744 AGCTATCACTTTCACGGCGA 59.469 50.000 16.62 0.00 0.00 5.54
563 610 9.298774 ACTTTAATACGTAGCTATCACTTTCAC 57.701 33.333 0.08 0.00 0.00 3.18
564 611 9.865321 AACTTTAATACGTAGCTATCACTTTCA 57.135 29.630 0.08 0.00 0.00 2.69
572 619 9.609346 ACCATGAAAACTTTAATACGTAGCTAT 57.391 29.630 0.08 0.00 0.00 2.97
573 620 9.090692 GACCATGAAAACTTTAATACGTAGCTA 57.909 33.333 0.08 0.00 0.00 3.32
574 621 7.065443 GGACCATGAAAACTTTAATACGTAGCT 59.935 37.037 0.08 0.00 0.00 3.32
575 622 7.148373 TGGACCATGAAAACTTTAATACGTAGC 60.148 37.037 0.08 0.00 0.00 3.58
576 623 8.259049 TGGACCATGAAAACTTTAATACGTAG 57.741 34.615 0.08 0.00 0.00 3.51
577 624 8.795842 ATGGACCATGAAAACTTTAATACGTA 57.204 30.769 6.06 0.00 0.00 3.57
578 625 7.392113 TGATGGACCATGAAAACTTTAATACGT 59.608 33.333 12.99 0.00 0.00 3.57
579 626 7.757526 TGATGGACCATGAAAACTTTAATACG 58.242 34.615 12.99 0.00 0.00 3.06
583 630 9.270640 CAAAATGATGGACCATGAAAACTTTAA 57.729 29.630 12.99 0.00 0.00 1.52
584 631 7.877097 CCAAAATGATGGACCATGAAAACTTTA 59.123 33.333 12.99 0.00 43.54 1.85
585 632 6.711645 CCAAAATGATGGACCATGAAAACTTT 59.288 34.615 12.99 0.00 43.54 2.66
586 633 6.183361 ACCAAAATGATGGACCATGAAAACTT 60.183 34.615 12.99 0.00 43.54 2.66
613 660 3.129287 CAGCAAATTAACCTCGCTGGATT 59.871 43.478 0.00 0.00 44.94 3.01
615 662 2.083774 CAGCAAATTAACCTCGCTGGA 58.916 47.619 0.00 0.00 44.94 3.86
621 668 6.088824 CACATCTTGTCAGCAAATTAACCTC 58.911 40.000 0.00 0.00 33.73 3.85
631 678 6.430925 AGCTTTATTTACACATCTTGTCAGCA 59.569 34.615 0.00 0.00 39.91 4.41
632 679 6.744537 CAGCTTTATTTACACATCTTGTCAGC 59.255 38.462 0.00 0.00 39.91 4.26
634 681 7.744087 ACAGCTTTATTTACACATCTTGTCA 57.256 32.000 0.00 0.00 39.91 3.58
640 687 9.278734 GCTCTTTTACAGCTTTATTTACACATC 57.721 33.333 0.00 0.00 33.75 3.06
641 688 8.244113 GGCTCTTTTACAGCTTTATTTACACAT 58.756 33.333 0.00 0.00 37.05 3.21
642 689 7.308951 GGGCTCTTTTACAGCTTTATTTACACA 60.309 37.037 0.00 0.00 37.05 3.72
643 690 7.027760 GGGCTCTTTTACAGCTTTATTTACAC 58.972 38.462 0.00 0.00 37.05 2.90
644 691 6.946009 AGGGCTCTTTTACAGCTTTATTTACA 59.054 34.615 0.00 0.00 37.05 2.41
645 692 7.392494 AGGGCTCTTTTACAGCTTTATTTAC 57.608 36.000 0.00 0.00 37.05 2.01
646 693 8.326529 ACTAGGGCTCTTTTACAGCTTTATTTA 58.673 33.333 0.00 0.00 37.05 1.40
649 696 6.314899 ACTAGGGCTCTTTTACAGCTTTAT 57.685 37.500 0.00 0.00 37.05 1.40
650 697 5.757099 ACTAGGGCTCTTTTACAGCTTTA 57.243 39.130 0.00 0.00 37.05 1.85
654 701 4.519350 ACAAAACTAGGGCTCTTTTACAGC 59.481 41.667 0.00 0.00 36.02 4.40
655 702 5.181433 GGACAAAACTAGGGCTCTTTTACAG 59.819 44.000 0.00 0.00 0.00 2.74
656 703 5.067954 GGACAAAACTAGGGCTCTTTTACA 58.932 41.667 0.00 0.00 0.00 2.41
658 705 4.320870 CGGACAAAACTAGGGCTCTTTTA 58.679 43.478 0.00 0.00 0.00 1.52
659 706 3.146847 CGGACAAAACTAGGGCTCTTTT 58.853 45.455 0.00 0.00 0.00 2.27
660 707 2.779506 CGGACAAAACTAGGGCTCTTT 58.220 47.619 0.00 0.00 0.00 2.52
663 710 0.036294 AGCGGACAAAACTAGGGCTC 60.036 55.000 0.00 0.00 0.00 4.70
670 721 0.387929 TCTCGTGAGCGGACAAAACT 59.612 50.000 0.00 0.00 38.89 2.66
710 761 5.068234 AGCTGTAAACGTGTGAGCTATAA 57.932 39.130 11.38 0.00 38.23 0.98
712 763 3.056821 TGAGCTGTAAACGTGTGAGCTAT 60.057 43.478 12.69 0.00 40.09 2.97
713 764 2.295070 TGAGCTGTAAACGTGTGAGCTA 59.705 45.455 12.69 2.00 40.09 3.32
715 766 1.192534 GTGAGCTGTAAACGTGTGAGC 59.807 52.381 0.00 3.87 0.00 4.26
716 767 2.218759 GTGTGAGCTGTAAACGTGTGAG 59.781 50.000 0.00 0.00 0.00 3.51
758 837 0.519961 AGTGCGAACGGTTTTATGGC 59.480 50.000 0.00 0.00 0.00 4.40
780 859 0.106819 ATGGATCTTGGCAGTGGCTC 60.107 55.000 18.53 6.68 40.87 4.70
787 866 2.290260 ACGTTTGAGATGGATCTTGGCA 60.290 45.455 0.00 0.00 37.25 4.92
803 886 1.227734 CTGGGTGGTTCGGACGTTT 60.228 57.895 0.00 0.00 0.00 3.60
980 1063 4.760047 CTGGGAAGGCGACCGTGG 62.760 72.222 0.00 0.00 0.00 4.94
1064 1148 0.323629 TTGGACCGAGGGTGATCAAC 59.676 55.000 0.73 0.73 35.25 3.18
1129 1213 2.158623 ACAGTTGCCCATCTTGAACTCA 60.159 45.455 0.00 0.00 0.00 3.41
1177 1261 0.318699 CGCTCTTCTTGGTGTCGACA 60.319 55.000 15.76 15.76 0.00 4.35
1206 1302 2.023791 GGAGTAACTTCCTCCTCCTCCT 60.024 54.545 0.00 0.00 44.29 3.69
1219 1315 1.590147 CTTCACCGGCGGAGTAACT 59.410 57.895 35.78 5.60 0.00 2.24
1221 1317 1.601419 CTCCTTCACCGGCGGAGTAA 61.601 60.000 35.78 20.86 39.54 2.24
1228 1330 1.376037 CTTCACCTCCTTCACCGGC 60.376 63.158 0.00 0.00 0.00 6.13
1349 1451 0.962356 CTGTGCCGGAAATTGGAGCT 60.962 55.000 5.05 0.00 0.00 4.09
1481 1585 5.740290 AATACACTAGCACACCAGTAGTT 57.260 39.130 0.00 0.00 0.00 2.24
1482 1586 7.093465 ACAATAATACACTAGCACACCAGTAGT 60.093 37.037 0.00 0.00 0.00 2.73
1623 1820 3.743911 CACCATACTGTCTAAAACGCACA 59.256 43.478 0.00 0.00 0.00 4.57
1628 1825 8.033038 TCTACATGTCACCATACTGTCTAAAAC 58.967 37.037 0.00 0.00 0.00 2.43
1660 1857 7.830217 TTGTAGCGCGCTATTTAAAATATTG 57.170 32.000 39.99 0.00 0.00 1.90
1661 1858 8.844441 TTTTGTAGCGCGCTATTTAAAATATT 57.156 26.923 39.99 14.84 0.00 1.28
1666 1863 7.742963 GCTATATTTTGTAGCGCGCTATTTAAA 59.257 33.333 39.99 33.75 35.68 1.52
1667 1864 7.231607 GCTATATTTTGTAGCGCGCTATTTAA 58.768 34.615 39.99 30.67 35.68 1.52
1668 1865 6.758149 GCTATATTTTGTAGCGCGCTATTTA 58.242 36.000 39.99 26.76 35.68 1.40
1669 1866 5.618561 GCTATATTTTGTAGCGCGCTATTT 58.381 37.500 39.99 23.11 35.68 1.40
1670 1867 5.204673 GCTATATTTTGTAGCGCGCTATT 57.795 39.130 39.99 24.33 35.68 1.73
1671 1868 4.842139 GCTATATTTTGTAGCGCGCTAT 57.158 40.909 39.99 28.03 35.68 2.97
1678 1875 2.742589 GGGCCTCGCTATATTTTGTAGC 59.257 50.000 0.84 0.00 40.83 3.58
1679 1876 4.273148 AGGGCCTCGCTATATTTTGTAG 57.727 45.455 0.00 0.00 0.00 2.74
1680 1877 4.347000 AGAAGGGCCTCGCTATATTTTGTA 59.653 41.667 6.46 0.00 0.00 2.41
1681 1878 3.136626 AGAAGGGCCTCGCTATATTTTGT 59.863 43.478 6.46 0.00 0.00 2.83
1682 1879 3.744660 AGAAGGGCCTCGCTATATTTTG 58.255 45.455 6.46 0.00 0.00 2.44
1683 1880 3.648545 AGAGAAGGGCCTCGCTATATTTT 59.351 43.478 6.46 0.00 38.19 1.82
1684 1881 3.243724 AGAGAAGGGCCTCGCTATATTT 58.756 45.455 6.46 0.00 38.19 1.40
1685 1882 2.896039 AGAGAAGGGCCTCGCTATATT 58.104 47.619 6.46 0.00 38.19 1.28
1686 1883 2.614134 AGAGAAGGGCCTCGCTATAT 57.386 50.000 6.46 0.00 38.19 0.86
1687 1884 3.520691 TTAGAGAAGGGCCTCGCTATA 57.479 47.619 6.46 6.57 38.19 1.31
1688 1885 2.383442 TTAGAGAAGGGCCTCGCTAT 57.617 50.000 6.46 7.67 38.19 2.97
1689 1886 2.154567 TTTAGAGAAGGGCCTCGCTA 57.845 50.000 6.46 9.32 38.19 4.26
1690 1887 1.139853 CATTTAGAGAAGGGCCTCGCT 59.860 52.381 6.46 7.69 38.19 4.93
1691 1888 1.587547 CATTTAGAGAAGGGCCTCGC 58.412 55.000 6.46 1.59 38.19 5.03
1692 1889 1.139853 AGCATTTAGAGAAGGGCCTCG 59.860 52.381 6.46 0.00 38.19 4.63
1693 1890 3.134804 TGTAGCATTTAGAGAAGGGCCTC 59.865 47.826 6.46 0.00 0.00 4.70
1694 1891 3.115390 TGTAGCATTTAGAGAAGGGCCT 58.885 45.455 0.00 0.00 0.00 5.19
1695 1892 3.206964 GTGTAGCATTTAGAGAAGGGCC 58.793 50.000 0.00 0.00 0.00 5.80
1696 1893 3.873910 TGTGTAGCATTTAGAGAAGGGC 58.126 45.455 0.00 0.00 0.00 5.19
1697 1894 5.491982 ACTTGTGTAGCATTTAGAGAAGGG 58.508 41.667 0.00 0.00 0.00 3.95
1698 1895 8.723942 ATAACTTGTGTAGCATTTAGAGAAGG 57.276 34.615 0.00 0.00 0.00 3.46
1700 1897 9.314321 GCTATAACTTGTGTAGCATTTAGAGAA 57.686 33.333 11.18 0.00 44.25 2.87
1701 1898 7.648112 CGCTATAACTTGTGTAGCATTTAGAGA 59.352 37.037 14.40 0.00 44.89 3.10
1702 1899 7.567771 GCGCTATAACTTGTGTAGCATTTAGAG 60.568 40.741 0.00 0.00 44.89 2.43
1703 1900 6.200286 GCGCTATAACTTGTGTAGCATTTAGA 59.800 38.462 0.00 0.00 44.89 2.10
1704 1901 6.355638 GCGCTATAACTTGTGTAGCATTTAG 58.644 40.000 0.00 0.00 44.89 1.85
1705 1902 5.051307 CGCGCTATAACTTGTGTAGCATTTA 60.051 40.000 5.56 0.00 44.89 1.40
1706 1903 4.260212 CGCGCTATAACTTGTGTAGCATTT 60.260 41.667 5.56 0.00 44.89 2.32
1707 1904 3.245284 CGCGCTATAACTTGTGTAGCATT 59.755 43.478 5.56 0.00 44.89 3.56
1708 1905 2.794910 CGCGCTATAACTTGTGTAGCAT 59.205 45.455 5.56 0.00 44.89 3.79
1709 1906 2.190161 CGCGCTATAACTTGTGTAGCA 58.810 47.619 5.56 0.00 44.89 3.49
1710 1907 1.071436 GCGCGCTATAACTTGTGTAGC 60.071 52.381 26.67 7.79 42.08 3.58
1711 1908 2.460918 AGCGCGCTATAACTTGTGTAG 58.539 47.619 35.79 0.00 0.00 2.74
1712 1909 2.572191 AGCGCGCTATAACTTGTGTA 57.428 45.000 35.79 0.00 0.00 2.90
1713 1910 2.572191 TAGCGCGCTATAACTTGTGT 57.428 45.000 35.48 11.63 0.00 3.72
1714 1911 2.601314 TGTTAGCGCGCTATAACTTGTG 59.399 45.455 38.51 0.00 33.86 3.33
1715 1912 2.858344 CTGTTAGCGCGCTATAACTTGT 59.142 45.455 38.51 15.29 33.86 3.16
1716 1913 2.347661 GCTGTTAGCGCGCTATAACTTG 60.348 50.000 38.51 28.99 33.86 3.16
1717 1914 1.859080 GCTGTTAGCGCGCTATAACTT 59.141 47.619 38.51 16.87 33.86 2.66
1718 1915 1.488527 GCTGTTAGCGCGCTATAACT 58.511 50.000 38.51 17.67 33.86 2.24
1729 1926 5.403897 TTGAAATATAGCACGCTGTTAGC 57.596 39.130 0.72 0.00 38.02 3.09
1730 1927 9.586150 CTATTTTGAAATATAGCACGCTGTTAG 57.414 33.333 0.72 0.00 31.03 2.34
1731 1928 8.067784 GCTATTTTGAAATATAGCACGCTGTTA 58.932 33.333 18.46 0.00 45.40 2.41
1732 1929 6.912591 GCTATTTTGAAATATAGCACGCTGTT 59.087 34.615 18.46 0.00 45.40 3.16
1733 1930 6.430451 GCTATTTTGAAATATAGCACGCTGT 58.570 36.000 18.46 0.00 45.40 4.40
1734 1931 6.901699 GCTATTTTGAAATATAGCACGCTG 57.098 37.500 18.46 0.00 45.40 5.18
1800 1997 9.855021 GCTCCTATGAAAAATTTAGTTGCTTAA 57.145 29.630 0.00 0.00 0.00 1.85
1801 1998 9.019656 TGCTCCTATGAAAAATTTAGTTGCTTA 57.980 29.630 0.00 0.00 0.00 3.09
1802 1999 7.895759 TGCTCCTATGAAAAATTTAGTTGCTT 58.104 30.769 0.00 0.00 0.00 3.91
1803 2000 7.466746 TGCTCCTATGAAAAATTTAGTTGCT 57.533 32.000 0.00 0.00 0.00 3.91
1804 2001 7.201470 GCTTGCTCCTATGAAAAATTTAGTTGC 60.201 37.037 0.00 0.00 0.00 4.17
1805 2002 7.814107 TGCTTGCTCCTATGAAAAATTTAGTTG 59.186 33.333 0.00 0.00 0.00 3.16
1806 2003 7.895759 TGCTTGCTCCTATGAAAAATTTAGTT 58.104 30.769 0.00 0.00 0.00 2.24
1807 2004 7.466746 TGCTTGCTCCTATGAAAAATTTAGT 57.533 32.000 0.00 0.00 0.00 2.24
1808 2005 8.937634 ATTGCTTGCTCCTATGAAAAATTTAG 57.062 30.769 0.00 0.00 0.00 1.85
1836 2033 8.985315 TTTCTCACTCCTTTTATCATATGCAT 57.015 30.769 3.79 3.79 0.00 3.96
1837 2034 7.012704 GCTTTCTCACTCCTTTTATCATATGCA 59.987 37.037 0.00 0.00 0.00 3.96
1838 2035 7.228308 AGCTTTCTCACTCCTTTTATCATATGC 59.772 37.037 0.00 0.00 0.00 3.14
1839 2036 8.674263 AGCTTTCTCACTCCTTTTATCATATG 57.326 34.615 0.00 0.00 0.00 1.78
1840 2037 9.995003 CTAGCTTTCTCACTCCTTTTATCATAT 57.005 33.333 0.00 0.00 0.00 1.78
1841 2038 8.982723 ACTAGCTTTCTCACTCCTTTTATCATA 58.017 33.333 0.00 0.00 0.00 2.15
1842 2039 7.768120 CACTAGCTTTCTCACTCCTTTTATCAT 59.232 37.037 0.00 0.00 0.00 2.45
1843 2040 7.099764 CACTAGCTTTCTCACTCCTTTTATCA 58.900 38.462 0.00 0.00 0.00 2.15
1844 2041 6.536941 CCACTAGCTTTCTCACTCCTTTTATC 59.463 42.308 0.00 0.00 0.00 1.75
1845 2042 6.410540 CCACTAGCTTTCTCACTCCTTTTAT 58.589 40.000 0.00 0.00 0.00 1.40
1846 2043 5.280011 CCCACTAGCTTTCTCACTCCTTTTA 60.280 44.000 0.00 0.00 0.00 1.52
1847 2044 4.505742 CCCACTAGCTTTCTCACTCCTTTT 60.506 45.833 0.00 0.00 0.00 2.27
1848 2045 3.008485 CCCACTAGCTTTCTCACTCCTTT 59.992 47.826 0.00 0.00 0.00 3.11
1849 2046 2.569404 CCCACTAGCTTTCTCACTCCTT 59.431 50.000 0.00 0.00 0.00 3.36
1850 2047 2.183679 CCCACTAGCTTTCTCACTCCT 58.816 52.381 0.00 0.00 0.00 3.69
1851 2048 2.167487 CTCCCACTAGCTTTCTCACTCC 59.833 54.545 0.00 0.00 0.00 3.85
1852 2049 3.093057 TCTCCCACTAGCTTTCTCACTC 58.907 50.000 0.00 0.00 0.00 3.51
1853 2050 3.176924 TCTCCCACTAGCTTTCTCACT 57.823 47.619 0.00 0.00 0.00 3.41
1854 2051 3.963428 TTCTCCCACTAGCTTTCTCAC 57.037 47.619 0.00 0.00 0.00 3.51
1855 2052 4.161189 CAGATTCTCCCACTAGCTTTCTCA 59.839 45.833 0.00 0.00 0.00 3.27
1856 2053 4.404073 TCAGATTCTCCCACTAGCTTTCTC 59.596 45.833 0.00 0.00 0.00 2.87
1857 2054 4.357325 TCAGATTCTCCCACTAGCTTTCT 58.643 43.478 0.00 0.00 0.00 2.52
1858 2055 4.744795 TCAGATTCTCCCACTAGCTTTC 57.255 45.455 0.00 0.00 0.00 2.62
1859 2056 6.814954 TTATCAGATTCTCCCACTAGCTTT 57.185 37.500 0.00 0.00 0.00 3.51
1860 2057 6.814954 TTTATCAGATTCTCCCACTAGCTT 57.185 37.500 0.00 0.00 0.00 3.74
1861 2058 6.613271 TCTTTTATCAGATTCTCCCACTAGCT 59.387 38.462 0.00 0.00 0.00 3.32
1862 2059 6.821388 TCTTTTATCAGATTCTCCCACTAGC 58.179 40.000 0.00 0.00 0.00 3.42
1863 2060 8.482128 ACTTCTTTTATCAGATTCTCCCACTAG 58.518 37.037 0.00 0.00 0.00 2.57
1864 2061 8.260818 CACTTCTTTTATCAGATTCTCCCACTA 58.739 37.037 0.00 0.00 0.00 2.74
1865 2062 7.038017 TCACTTCTTTTATCAGATTCTCCCACT 60.038 37.037 0.00 0.00 0.00 4.00
1866 2063 7.106239 TCACTTCTTTTATCAGATTCTCCCAC 58.894 38.462 0.00 0.00 0.00 4.61
1867 2064 7.180946 TCTCACTTCTTTTATCAGATTCTCCCA 59.819 37.037 0.00 0.00 0.00 4.37
1868 2065 7.560368 TCTCACTTCTTTTATCAGATTCTCCC 58.440 38.462 0.00 0.00 0.00 4.30
1869 2066 9.442047 TTTCTCACTTCTTTTATCAGATTCTCC 57.558 33.333 0.00 0.00 0.00 3.71
1871 2068 8.945057 GCTTTCTCACTTCTTTTATCAGATTCT 58.055 33.333 0.00 0.00 0.00 2.40
1872 2069 8.945057 AGCTTTCTCACTTCTTTTATCAGATTC 58.055 33.333 0.00 0.00 0.00 2.52
1873 2070 8.860780 AGCTTTCTCACTTCTTTTATCAGATT 57.139 30.769 0.00 0.00 0.00 2.40
1874 2071 9.598517 CTAGCTTTCTCACTTCTTTTATCAGAT 57.401 33.333 0.00 0.00 0.00 2.90
1875 2072 8.589338 ACTAGCTTTCTCACTTCTTTTATCAGA 58.411 33.333 0.00 0.00 0.00 3.27
1876 2073 8.655092 CACTAGCTTTCTCACTTCTTTTATCAG 58.345 37.037 0.00 0.00 0.00 2.90
1877 2074 7.604164 CCACTAGCTTTCTCACTTCTTTTATCA 59.396 37.037 0.00 0.00 0.00 2.15
1878 2075 7.604545 ACCACTAGCTTTCTCACTTCTTTTATC 59.395 37.037 0.00 0.00 0.00 1.75
1879 2076 7.454225 ACCACTAGCTTTCTCACTTCTTTTAT 58.546 34.615 0.00 0.00 0.00 1.40
1880 2077 6.827727 ACCACTAGCTTTCTCACTTCTTTTA 58.172 36.000 0.00 0.00 0.00 1.52
1881 2078 5.685728 ACCACTAGCTTTCTCACTTCTTTT 58.314 37.500 0.00 0.00 0.00 2.27
1882 2079 5.163301 TGACCACTAGCTTTCTCACTTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
1883 2080 4.345257 TGACCACTAGCTTTCTCACTTCTT 59.655 41.667 0.00 0.00 0.00 2.52
1884 2081 3.898123 TGACCACTAGCTTTCTCACTTCT 59.102 43.478 0.00 0.00 0.00 2.85
1885 2082 4.258702 TGACCACTAGCTTTCTCACTTC 57.741 45.455 0.00 0.00 0.00 3.01
1886 2083 4.564406 CCATGACCACTAGCTTTCTCACTT 60.564 45.833 0.00 0.00 0.00 3.16
1887 2084 3.055530 CCATGACCACTAGCTTTCTCACT 60.056 47.826 0.00 0.00 0.00 3.41
1888 2085 3.265791 CCATGACCACTAGCTTTCTCAC 58.734 50.000 0.00 0.00 0.00 3.51
1889 2086 2.237143 CCCATGACCACTAGCTTTCTCA 59.763 50.000 0.00 0.00 0.00 3.27
1890 2087 2.237392 ACCCATGACCACTAGCTTTCTC 59.763 50.000 0.00 0.00 0.00 2.87
1891 2088 2.269940 ACCCATGACCACTAGCTTTCT 58.730 47.619 0.00 0.00 0.00 2.52
1892 2089 2.749621 CAACCCATGACCACTAGCTTTC 59.250 50.000 0.00 0.00 0.00 2.62
1893 2090 2.375174 TCAACCCATGACCACTAGCTTT 59.625 45.455 0.00 0.00 31.50 3.51
1894 2091 1.985159 TCAACCCATGACCACTAGCTT 59.015 47.619 0.00 0.00 31.50 3.74
1895 2092 1.656587 TCAACCCATGACCACTAGCT 58.343 50.000 0.00 0.00 31.50 3.32
1896 2093 2.717639 ATCAACCCATGACCACTAGC 57.282 50.000 0.00 0.00 41.93 3.42
1897 2094 4.158394 CCAAAATCAACCCATGACCACTAG 59.842 45.833 0.00 0.00 41.93 2.57
1898 2095 4.085733 CCAAAATCAACCCATGACCACTA 58.914 43.478 0.00 0.00 41.93 2.74
1899 2096 2.899256 CCAAAATCAACCCATGACCACT 59.101 45.455 0.00 0.00 41.93 4.00
1900 2097 2.612721 GCCAAAATCAACCCATGACCAC 60.613 50.000 0.00 0.00 41.93 4.16
1901 2098 1.622811 GCCAAAATCAACCCATGACCA 59.377 47.619 0.00 0.00 41.93 4.02
1902 2099 1.066215 GGCCAAAATCAACCCATGACC 60.066 52.381 0.00 0.00 41.93 4.02
1903 2100 1.901833 AGGCCAAAATCAACCCATGAC 59.098 47.619 5.01 0.00 41.93 3.06
1904 2101 1.901159 CAGGCCAAAATCAACCCATGA 59.099 47.619 5.01 0.00 43.67 3.07
1905 2102 1.676615 GCAGGCCAAAATCAACCCATG 60.677 52.381 5.01 0.00 0.00 3.66
1906 2103 0.614812 GCAGGCCAAAATCAACCCAT 59.385 50.000 5.01 0.00 0.00 4.00
1907 2104 0.471591 AGCAGGCCAAAATCAACCCA 60.472 50.000 5.01 0.00 0.00 4.51
1908 2105 0.037046 CAGCAGGCCAAAATCAACCC 60.037 55.000 5.01 0.00 0.00 4.11
1909 2106 0.037046 CCAGCAGGCCAAAATCAACC 60.037 55.000 5.01 0.00 0.00 3.77
1910 2107 0.037046 CCCAGCAGGCCAAAATCAAC 60.037 55.000 5.01 0.00 0.00 3.18
1911 2108 2.364353 CCCAGCAGGCCAAAATCAA 58.636 52.632 5.01 0.00 0.00 2.57
1912 2109 4.116926 CCCAGCAGGCCAAAATCA 57.883 55.556 5.01 0.00 0.00 2.57
1930 2127 1.549203 AATAAGCACAGCCCAACAGG 58.451 50.000 0.00 0.00 39.47 4.00
1931 2128 2.557924 TGAAATAAGCACAGCCCAACAG 59.442 45.455 0.00 0.00 0.00 3.16
1932 2129 2.557924 CTGAAATAAGCACAGCCCAACA 59.442 45.455 0.00 0.00 0.00 3.33
1933 2130 2.558359 ACTGAAATAAGCACAGCCCAAC 59.442 45.455 0.00 0.00 35.38 3.77
1934 2131 2.875296 ACTGAAATAAGCACAGCCCAA 58.125 42.857 0.00 0.00 35.38 4.12
1935 2132 2.584835 ACTGAAATAAGCACAGCCCA 57.415 45.000 0.00 0.00 35.38 5.36
1936 2133 3.942130 AAACTGAAATAAGCACAGCCC 57.058 42.857 0.00 0.00 35.38 5.19
1937 2134 3.429881 GCAAAACTGAAATAAGCACAGCC 59.570 43.478 0.00 0.00 35.38 4.85
1938 2135 4.050553 TGCAAAACTGAAATAAGCACAGC 58.949 39.130 0.00 0.00 35.38 4.40
1939 2136 5.921976 TCATGCAAAACTGAAATAAGCACAG 59.078 36.000 0.00 0.00 37.62 3.66
1940 2137 5.840715 TCATGCAAAACTGAAATAAGCACA 58.159 33.333 0.00 0.00 32.92 4.57
1941 2138 6.956299 ATCATGCAAAACTGAAATAAGCAC 57.044 33.333 0.00 0.00 32.92 4.40
1942 2139 8.637281 CATATCATGCAAAACTGAAATAAGCA 57.363 30.769 0.00 0.00 34.78 3.91
1987 2184 4.891277 ACACACGCTATAACGTTGTAAC 57.109 40.909 11.99 3.02 45.75 2.50
1988 2185 4.558470 GCTACACACGCTATAACGTTGTAA 59.442 41.667 11.99 0.00 45.75 2.41
1989 2186 4.097714 GCTACACACGCTATAACGTTGTA 58.902 43.478 11.99 7.93 45.75 2.41
1990 2187 2.919229 GCTACACACGCTATAACGTTGT 59.081 45.455 11.99 6.97 45.75 3.32
1991 2188 2.036004 CGCTACACACGCTATAACGTTG 60.036 50.000 11.99 4.29 45.75 4.10
1992 2189 2.179589 CGCTACACACGCTATAACGTT 58.820 47.619 5.88 5.88 45.75 3.99
2002 2199 1.072348 GTAATTAGCGCGCTACACACG 60.072 52.381 38.48 0.00 0.00 4.49
2003 2200 1.072348 CGTAATTAGCGCGCTACACAC 60.072 52.381 38.48 30.12 0.00 3.82
2004 2201 1.193644 CGTAATTAGCGCGCTACACA 58.806 50.000 38.48 25.57 0.00 3.72
2005 2202 0.111835 GCGTAATTAGCGCGCTACAC 60.112 55.000 38.48 30.75 46.55 2.90
2006 2203 2.209872 GCGTAATTAGCGCGCTACA 58.790 52.632 38.48 27.91 46.55 2.74
2032 2229 0.247695 GCAAAATCAGACGCTACGGC 60.248 55.000 0.00 0.00 33.59 5.68
2033 2230 0.373716 GGCAAAATCAGACGCTACGG 59.626 55.000 0.00 0.00 0.00 4.02
2034 2231 1.075542 TGGCAAAATCAGACGCTACG 58.924 50.000 0.00 0.00 0.00 3.51
2035 2232 3.552604 TTTGGCAAAATCAGACGCTAC 57.447 42.857 10.83 0.00 0.00 3.58
2036 2233 3.608241 CGTTTTGGCAAAATCAGACGCTA 60.608 43.478 26.41 0.00 32.22 4.26
2037 2234 2.742774 GTTTTGGCAAAATCAGACGCT 58.257 42.857 26.41 0.00 32.22 5.07
2038 2235 1.451651 CGTTTTGGCAAAATCAGACGC 59.548 47.619 26.41 11.96 32.22 5.19
2039 2236 2.726633 ACGTTTTGGCAAAATCAGACG 58.273 42.857 26.41 25.31 34.26 4.18
2040 2237 4.145756 CGTTACGTTTTGGCAAAATCAGAC 59.854 41.667 26.41 20.03 32.22 3.51
2041 2238 4.201930 ACGTTACGTTTTGGCAAAATCAGA 60.202 37.500 26.41 11.98 36.35 3.27
2042 2239 4.039032 ACGTTACGTTTTGGCAAAATCAG 58.961 39.130 26.41 21.40 36.35 2.90
2043 2240 4.030134 ACGTTACGTTTTGGCAAAATCA 57.970 36.364 26.41 12.94 36.35 2.57
2044 2241 4.284485 AGACGTTACGTTTTGGCAAAATC 58.716 39.130 26.41 17.74 41.37 2.17
2045 2242 4.284485 GAGACGTTACGTTTTGGCAAAAT 58.716 39.130 26.41 15.14 41.37 1.82
2046 2243 3.487209 GGAGACGTTACGTTTTGGCAAAA 60.487 43.478 20.81 20.81 41.37 2.44
2047 2244 2.031930 GGAGACGTTACGTTTTGGCAAA 59.968 45.455 12.82 8.93 41.37 3.68
2048 2245 1.598601 GGAGACGTTACGTTTTGGCAA 59.401 47.619 12.82 0.00 41.37 4.52
2049 2246 1.202557 AGGAGACGTTACGTTTTGGCA 60.203 47.619 12.82 0.00 41.37 4.92
2050 2247 1.505425 AGGAGACGTTACGTTTTGGC 58.495 50.000 12.82 0.00 41.37 4.52
2051 2248 3.059393 GGAAAGGAGACGTTACGTTTTGG 60.059 47.826 12.82 0.00 41.37 3.28
2052 2249 3.556775 TGGAAAGGAGACGTTACGTTTTG 59.443 43.478 12.82 0.00 41.37 2.44
2053 2250 3.795877 TGGAAAGGAGACGTTACGTTTT 58.204 40.909 12.82 8.44 41.37 2.43
2054 2251 3.457610 TGGAAAGGAGACGTTACGTTT 57.542 42.857 12.82 6.17 41.37 3.60
2055 2252 3.457610 TTGGAAAGGAGACGTTACGTT 57.542 42.857 12.82 1.89 41.37 3.99
2056 2253 3.457610 TTTGGAAAGGAGACGTTACGT 57.542 42.857 11.12 11.12 45.10 3.57
2057 2254 5.501897 GCATATTTGGAAAGGAGACGTTACG 60.502 44.000 2.19 2.19 35.10 3.18
2058 2255 5.585047 AGCATATTTGGAAAGGAGACGTTAC 59.415 40.000 0.00 0.00 32.67 2.50
2059 2256 5.741011 AGCATATTTGGAAAGGAGACGTTA 58.259 37.500 0.00 0.00 29.98 3.18
2060 2257 4.589908 AGCATATTTGGAAAGGAGACGTT 58.410 39.130 0.00 0.00 33.60 3.99
2061 2258 4.222124 AGCATATTTGGAAAGGAGACGT 57.778 40.909 0.00 0.00 0.00 4.34
2062 2259 7.095187 GGTTATAGCATATTTGGAAAGGAGACG 60.095 40.741 0.00 0.00 0.00 4.18
2063 2260 7.095187 CGGTTATAGCATATTTGGAAAGGAGAC 60.095 40.741 0.00 0.00 0.00 3.36
2064 2261 6.934645 CGGTTATAGCATATTTGGAAAGGAGA 59.065 38.462 0.00 0.00 0.00 3.71
2065 2262 6.348540 GCGGTTATAGCATATTTGGAAAGGAG 60.349 42.308 0.00 0.00 34.19 3.69
2066 2263 5.472137 GCGGTTATAGCATATTTGGAAAGGA 59.528 40.000 0.00 0.00 34.19 3.36
2067 2264 5.616866 CGCGGTTATAGCATATTTGGAAAGG 60.617 44.000 0.00 0.00 34.19 3.11
2068 2265 5.049680 ACGCGGTTATAGCATATTTGGAAAG 60.050 40.000 12.47 0.00 34.19 2.62
2069 2266 4.817464 ACGCGGTTATAGCATATTTGGAAA 59.183 37.500 12.47 0.00 34.19 3.13
2070 2267 4.382291 ACGCGGTTATAGCATATTTGGAA 58.618 39.130 12.47 0.00 34.19 3.53
2071 2268 3.997762 ACGCGGTTATAGCATATTTGGA 58.002 40.909 12.47 0.00 34.19 3.53
2072 2269 4.742438 AACGCGGTTATAGCATATTTGG 57.258 40.909 12.47 0.00 34.19 3.28
2073 2270 7.629465 CGTTATAACGCGGTTATAGCATATTTG 59.371 37.037 23.72 10.45 46.06 2.32
2074 2271 7.669098 CGTTATAACGCGGTTATAGCATATTT 58.331 34.615 23.72 5.86 46.06 1.40
2075 2272 7.213252 CGTTATAACGCGGTTATAGCATATT 57.787 36.000 23.72 6.01 46.06 1.28
2076 2273 6.801367 CGTTATAACGCGGTTATAGCATAT 57.199 37.500 23.72 6.58 46.06 1.78
2091 2288 4.900664 ACACGCTATTTTGCCGTTATAAC 58.099 39.130 5.47 5.47 0.00 1.89
2092 2289 5.548706 AACACGCTATTTTGCCGTTATAA 57.451 34.783 0.00 0.00 0.00 0.98
2093 2290 6.847956 ATAACACGCTATTTTGCCGTTATA 57.152 33.333 0.00 0.00 36.82 0.98
2094 2291 5.744666 ATAACACGCTATTTTGCCGTTAT 57.255 34.783 0.00 0.00 35.28 1.89
2095 2292 5.548706 AATAACACGCTATTTTGCCGTTA 57.451 34.783 0.00 0.00 34.27 3.18
2096 2293 4.428615 AATAACACGCTATTTTGCCGTT 57.571 36.364 0.00 0.00 0.00 4.44
2097 2294 4.428615 AAATAACACGCTATTTTGCCGT 57.571 36.364 0.00 0.00 29.05 5.68
2098 2295 6.856494 TTTAAATAACACGCTATTTTGCCG 57.144 33.333 3.85 0.00 34.21 5.69
2143 2340 9.655769 CCAATTCTCGATTTACATTCACTTATG 57.344 33.333 0.00 0.00 0.00 1.90
2175 2375 0.761323 GGAGCCCTCCTAGACTTCCC 60.761 65.000 7.08 0.00 46.16 3.97
2219 2419 8.310382 AGCTGAAGTAATTAGCCAGTATATCAG 58.690 37.037 0.00 0.00 38.18 2.90
2225 2425 4.962995 AGGAGCTGAAGTAATTAGCCAGTA 59.037 41.667 0.00 0.00 38.18 2.74
2316 2562 8.175069 CGGTATCTTGATCGATTTTTCTTTCAA 58.825 33.333 0.00 0.00 0.00 2.69
2318 2564 7.126398 CCGGTATCTTGATCGATTTTTCTTTC 58.874 38.462 0.00 0.00 0.00 2.62
2349 2595 0.729116 CCTAGTTGCAATGCCACTCG 59.271 55.000 15.43 9.44 36.05 4.18
2365 2612 8.840200 ACTCCTACTTCATTTTCATACTCCTA 57.160 34.615 0.00 0.00 0.00 2.94
2366 2613 7.741554 ACTCCTACTTCATTTTCATACTCCT 57.258 36.000 0.00 0.00 0.00 3.69
2367 2614 9.886132 TTTACTCCTACTTCATTTTCATACTCC 57.114 33.333 0.00 0.00 0.00 3.85
2379 2653 6.257849 CGCATGCTAATTTTACTCCTACTTCA 59.742 38.462 17.13 0.00 0.00 3.02
2398 2672 2.764314 CCAAGCCACTACCGCATGC 61.764 63.158 7.91 7.91 0.00 4.06
2404 2678 1.017701 GCACGTACCAAGCCACTACC 61.018 60.000 0.00 0.00 0.00 3.18
2415 2689 2.128035 GCATATGAGACAGCACGTACC 58.872 52.381 6.97 0.00 0.00 3.34
2416 2690 3.085443 AGCATATGAGACAGCACGTAC 57.915 47.619 6.97 0.00 0.00 3.67
2476 2751 3.047280 CCGCACGCACTTGCCTTA 61.047 61.111 0.00 0.00 39.53 2.69
2519 2794 1.004595 CACTGCAGTCGATCACCATG 58.995 55.000 18.64 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.