AutoCloner

Multiple sequence alignment - TraesCS2B01G246700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G246700	chr2B	100.000	2813	0	0	1	2813	250744942	250747754	0.000000e+00	5195.0
1	TraesCS2B01G246700	chr5D	93.907	2150	123	7	668	2813	106512689	106514834	0.000000e+00	3238.0
2	TraesCS2B01G246700	chr5D	89.552	1541	131	19	466	1987	303815155	303816684	0.000000e+00	1927.0
3	TraesCS2B01G246700	chr5D	85.629	167	23	1	1	167	287550635	287550800	1.040000e-39	174.0
4	TraesCS2B01G246700	chr2D	92.867	2187	145	6	627	2813	387951023	387953198	0.000000e+00	3164.0
5	TraesCS2B01G246700	chr2D	86.977	215	28	0	1	215	635128407	635128193	2.800000e-60	243.0
6	TraesCS2B01G246700	chr7D	90.687	2373	173	26	472	2813	205805389	205803034	0.000000e+00	3114.0
7	TraesCS2B01G246700	chr3A	90.452	2388	186	18	458	2812	582982108	582984486	0.000000e+00	3109.0
8	TraesCS2B01G246700	chr3A	87.786	131	14	2	1	130	144325426	144325297	4.850000e-33	152.0
9	TraesCS2B01G246700	chr1B	90.568	2375	175	27	471	2812	321117310	321119668	0.000000e+00	3099.0
10	TraesCS2B01G246700	chr1B	91.455	2200	163	16	627	2813	515932429	515930242	0.000000e+00	2998.0
11	TraesCS2B01G246700	chr6D	91.161	2274	180	14	551	2813	454863211	454865474	0.000000e+00	3066.0
12	TraesCS2B01G246700	chr4B	90.199	2357	201	21	472	2813	86748459	86746118	0.000000e+00	3046.0
13	TraesCS2B01G246700	chr4B	85.385	130	18	1	1	130	86749139	86749011	1.760000e-27	134.0
14	TraesCS2B01G246700	chr3D	91.800	2195	167	6	627	2813	1970313	1972502	0.000000e+00	3044.0
15	TraesCS2B01G246700	chr3D	88.485	165	19	0	1	165	368223861	368223697	1.710000e-47	200.0
16	TraesCS2B01G246700	chr7A	89.803	2383	200	20	463	2812	82954392	82956764	0.000000e+00	3014.0
17	TraesCS2B01G246700	chr7A	90.975	2194	186	8	622	2813	183363011	183365194	0.000000e+00	2944.0
18	TraesCS2B01G246700	chr4A	91.744	2168	157	14	657	2813	651988121	651990277	0.000000e+00	2992.0
19	TraesCS2B01G246700	chr4A	91.772	2127	161	12	695	2813	279430998	279433118	0.000000e+00	2946.0
20	TraesCS2B01G246700	chr7B	86.524	1217	123	25	455	1650	553460169	553458973	0.000000e+00	1301.0
21	TraesCS2B01G246700	chr7B	86.875	800	77	12	456	1234	13250547	13249755	0.000000e+00	870.0
22	TraesCS2B01G246700	chr6B	87.834	1011	105	13	473	1470	189608962	189609967	0.000000e+00	1170.0
23	TraesCS2B01G246700	chr1D	87.195	164	21	0	2	165	7779694	7779857	1.330000e-43	187.0
24	TraesCS2B01G246700	chr6A	86.228	167	22	1	1	167	532529936	532529771	2.230000e-41	180.0
25	TraesCS2B01G246700	chr3B	100.000	30	0	0	353	382	808062419	808062448	3.910000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G246700	chr2B	250744942	250747754	2812	False	5195	5195	100.000	1	2813	1	chr2B.!!$F1	2812
1	TraesCS2B01G246700	chr5D	106512689	106514834	2145	False	3238	3238	93.907	668	2813	1	chr5D.!!$F1	2145
2	TraesCS2B01G246700	chr5D	303815155	303816684	1529	False	1927	1927	89.552	466	1987	1	chr5D.!!$F3	1521
3	TraesCS2B01G246700	chr2D	387951023	387953198	2175	False	3164	3164	92.867	627	2813	1	chr2D.!!$F1	2186
4	TraesCS2B01G246700	chr7D	205803034	205805389	2355	True	3114	3114	90.687	472	2813	1	chr7D.!!$R1	2341
5	TraesCS2B01G246700	chr3A	582982108	582984486	2378	False	3109	3109	90.452	458	2812	1	chr3A.!!$F1	2354
6	TraesCS2B01G246700	chr1B	321117310	321119668	2358	False	3099	3099	90.568	471	2812	1	chr1B.!!$F1	2341
7	TraesCS2B01G246700	chr1B	515930242	515932429	2187	True	2998	2998	91.455	627	2813	1	chr1B.!!$R1	2186
8	TraesCS2B01G246700	chr6D	454863211	454865474	2263	False	3066	3066	91.161	551	2813	1	chr6D.!!$F1	2262
9	TraesCS2B01G246700	chr4B	86746118	86749139	3021	True	1590	3046	87.792	1	2813	2	chr4B.!!$R1	2812
10	TraesCS2B01G246700	chr3D	1970313	1972502	2189	False	3044	3044	91.800	627	2813	1	chr3D.!!$F1	2186
11	TraesCS2B01G246700	chr7A	82954392	82956764	2372	False	3014	3014	89.803	463	2812	1	chr7A.!!$F1	2349
12	TraesCS2B01G246700	chr7A	183363011	183365194	2183	False	2944	2944	90.975	622	2813	1	chr7A.!!$F2	2191
13	TraesCS2B01G246700	chr4A	651988121	651990277	2156	False	2992	2992	91.744	657	2813	1	chr4A.!!$F2	2156
14	TraesCS2B01G246700	chr4A	279430998	279433118	2120	False	2946	2946	91.772	695	2813	1	chr4A.!!$F1	2118
15	TraesCS2B01G246700	chr7B	553458973	553460169	1196	True	1301	1301	86.524	455	1650	1	chr7B.!!$R2	1195
16	TraesCS2B01G246700	chr7B	13249755	13250547	792	True	870	870	86.875	456	1234	1	chr7B.!!$R1	778
17	TraesCS2B01G246700	chr6B	189608962	189609967	1005	False	1170	1170	87.834	473	1470	1	chr6B.!!$F1	997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
149	150	1.153745	AAGCCATCGACAGCGTCTC	60.154	57.895	3.07	0.0	38.98	3.36	F
1047	1461	0.397941	CTGAGTTGGCCCAGACAAGA	59.602	55.000	0.00	0.0	27.77	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1107	1521	0.471211	TCCCCTTATCGATCGCCCTT	60.471	55.0	11.09	0.00	0.00	3.95	R
2752	3217	0.112995	TGAGGGTAGTGTACACGGGT	59.887	55.0	19.93	5.93	37.12	5.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	3.305676	GGTACAGATCGTGATCCAGATGG	60.306	52.174	6.24	0.00	38.58	3.51
26	27	2.363359	CAGATCGTGATCCAGATGGTCA	59.637	50.000	6.24	0.00	38.58	4.02
28	29	4.219288	CAGATCGTGATCCAGATGGTCATA	59.781	45.833	6.24	0.00	38.58	2.15
29	30	4.462132	AGATCGTGATCCAGATGGTCATAG	59.538	45.833	6.24	2.42	38.58	2.23
43	44	1.733360	GTCATAGTACCGCCGCAAAAA	59.267	47.619	0.00	0.00	0.00	1.94
64	65	3.792047	CAGATGTGCCACGTGCCG	61.792	66.667	10.91	0.00	40.16	5.69
66	67	3.353836	GATGTGCCACGTGCCGTT	61.354	61.111	10.91	0.00	38.32	4.44
74	75	3.868985	ACGTGCCGTTGGGGTTCT	61.869	61.111	0.00	0.00	36.35	3.01
76	77	2.983592	GTGCCGTTGGGGTTCTGG	60.984	66.667	0.00	0.00	38.44	3.86
82	83	1.340991	CCGTTGGGGTTCTGGATGAAT	60.341	52.381	0.00	0.00	36.99	2.57
83	84	1.745087	CGTTGGGGTTCTGGATGAATG	59.255	52.381	0.00	0.00	36.99	2.67
95	96	2.101415	TGGATGAATGCGACGAAGATCT	59.899	45.455	0.00	0.00	0.00	2.75
130	131	4.451150	TCCAGATGACGCCGTGCC	62.451	66.667	0.00	0.00	0.00	5.01
131	132	4.758251	CCAGATGACGCCGTGCCA	62.758	66.667	0.00	0.00	0.00	4.92
132	133	2.741985	CAGATGACGCCGTGCCAA	60.742	61.111	0.00	0.00	0.00	4.52
133	134	2.434884	AGATGACGCCGTGCCAAG	60.435	61.111	0.00	0.00	0.00	3.61
141	142	3.499737	CCGTGCCAAGCCATCGAC	61.500	66.667	0.00	0.00	0.00	4.20
142	143	2.741985	CGTGCCAAGCCATCGACA	60.742	61.111	0.00	0.00	0.00	4.35
143	144	2.743752	CGTGCCAAGCCATCGACAG	61.744	63.158	0.00	0.00	0.00	3.51
144	145	2.747460	TGCCAAGCCATCGACAGC	60.747	61.111	0.22	0.22	0.00	4.40
145	146	3.869272	GCCAAGCCATCGACAGCG	61.869	66.667	3.07	0.00	39.35	5.18
146	147	2.434884	CCAAGCCATCGACAGCGT	60.435	61.111	3.07	0.00	38.98	5.07
147	148	2.456119	CCAAGCCATCGACAGCGTC	61.456	63.158	3.07	0.00	38.98	5.19
148	149	1.446792	CAAGCCATCGACAGCGTCT	60.447	57.895	3.07	0.00	38.98	4.18
149	150	1.153745	AAGCCATCGACAGCGTCTC	60.154	57.895	3.07	0.00	38.98	3.36
150	151	2.564553	AAGCCATCGACAGCGTCTCC	62.565	60.000	3.07	0.00	38.98	3.71
151	152	2.105128	CCATCGACAGCGTCTCCC	59.895	66.667	0.00	0.00	38.98	4.30
152	153	2.418910	CCATCGACAGCGTCTCCCT	61.419	63.158	0.00	0.00	38.98	4.20
153	154	1.226802	CATCGACAGCGTCTCCCTG	60.227	63.158	0.00	0.00	38.98	4.45
154	155	2.418910	ATCGACAGCGTCTCCCTGG	61.419	63.158	0.00	0.00	38.98	4.45
155	156	4.803426	CGACAGCGTCTCCCTGGC	62.803	72.222	7.03	0.00	34.95	4.85
156	157	4.459089	GACAGCGTCTCCCTGGCC	62.459	72.222	0.00	0.00	32.03	5.36
162	163	4.106925	GTCTCCCTGGCCCTGCTG	62.107	72.222	0.00	0.00	0.00	4.41
186	187	4.976925	CGCCCTAGCCATCTGCCG	62.977	72.222	0.00	0.00	42.71	5.69
187	188	3.550431	GCCCTAGCCATCTGCCGA	61.550	66.667	0.00	0.00	42.71	5.54
188	189	2.423446	CCCTAGCCATCTGCCGAC	59.577	66.667	0.00	0.00	42.71	4.79
189	190	2.423446	CCTAGCCATCTGCCGACC	59.577	66.667	0.00	0.00	42.71	4.79
190	191	2.434843	CCTAGCCATCTGCCGACCA	61.435	63.158	0.00	0.00	42.71	4.02
597	978	2.788640	GCCGTGGGGTACTCGCATA	61.789	63.158	4.81	0.00	40.50	3.14
761	1168	4.503910	GCTTTAAAATGCCTCGGGAATTT	58.496	39.130	3.68	3.68	0.00	1.82
762	1169	4.329801	GCTTTAAAATGCCTCGGGAATTTG	59.670	41.667	9.02	0.46	0.00	2.32
793	1202	4.815308	GGCTAGTTCTCATGTACTAGACGA	59.185	45.833	23.84	3.41	42.86	4.20
814	1223	4.551603	CGAGCTTAACATGCTATCTGTTGC	60.552	45.833	0.00	0.00	41.30	4.17
818	1228	5.392380	GCTTAACATGCTATCTGTTGCAACT	60.392	40.000	28.61	12.70	42.74	3.16
969	1383	5.119125	GCATTTGTGCAAAAGATTACCTGTC	59.881	40.000	1.26	0.00	33.56	3.51
1014	1428	1.434696	GCAGATGGCCGGAATTGTG	59.565	57.895	5.05	0.00	36.11	3.33
1047	1461	0.397941	CTGAGTTGGCCCAGACAAGA	59.602	55.000	0.00	0.00	27.77	3.02
1107	1521	0.907704	TCGAGGGCAAAAGCCTCCTA	60.908	55.000	6.45	0.00	0.00	2.94
1118	1532	2.201022	GCCTCCTAAGGGCGATCGA	61.201	63.158	21.57	0.00	43.58	3.59
1297	1713	1.291877	GCGGCTGAAGTACACTGTGG	61.292	60.000	13.09	0.00	0.00	4.17
1349	1765	6.128634	CGTCTAAAGTTTGCGGACTTTAAGAT	60.129	38.462	18.99	3.40	46.02	2.40
1368	1784	3.852578	AGATGGTTGGGGAGTACAATTCT	59.147	43.478	0.00	0.00	0.00	2.40
1428	1844	2.253610	ACTGAGATTACCGACACCCAA	58.746	47.619	0.00	0.00	0.00	4.12
1538	1954	0.036388	TTGATTGACGTCCTCCAGGC	60.036	55.000	14.12	0.00	34.44	4.85
1541	1957	4.671590	TGACGTCCTCCAGGCGGA	62.672	66.667	14.12	0.00	39.79	5.54
1637	2056	0.952984	GCTCTCAAAGTCCGCAAGCT	60.953	55.000	0.00	0.00	0.00	3.74
1676	2095	0.890996	CGCAAGGGCAAGAAGAAGGT	60.891	55.000	0.00	0.00	41.24	3.50
1801	2228	4.314440	GCGCACCACAGGAGGTCA	62.314	66.667	0.30	0.00	40.77	4.02
1812	2239	3.875727	CACAGGAGGTCATTGAAGCATAG	59.124	47.826	0.00	0.00	0.00	2.23
1872	2299	3.640407	GAGGGAGCACCACTGGCA	61.640	66.667	1.58	0.00	43.89	4.92
2152	2590	6.874288	CCTCTTTGGTTATCATGATTCCTC	57.126	41.667	14.65	2.62	0.00	3.71
2246	2704	9.806203	TGATTGGATGACATTTATTTCATTCAC	57.194	29.630	0.39	0.00	37.45	3.18
2362	2820	4.327898	GTCATATTTTAGAACGCGTGTGGA	59.672	41.667	14.98	0.00	0.00	4.02
2503	2966	1.676014	GGTTCGCACATAGTTGGCTCT	60.676	52.381	0.00	0.00	0.00	4.09
2575	3038	1.609580	GCATTGTTGTACCCGGAGTCA	60.610	52.381	0.73	0.00	0.00	3.41
2607	3070	6.114187	TCTTTTGAGCTTTAGAGACATCCA	57.886	37.500	0.00	0.00	0.00	3.41
2724	3189	2.210116	GCTTCCTTCGTTTGACACAGA	58.790	47.619	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	3.826729	CGGTACTATGACCATCTGGATCA	59.173	47.826	2.55	3.86	39.72	2.92
23	24	1.361793	TTTTGCGGCGGTACTATGAC	58.638	50.000	9.78	0.00	0.00	3.06
26	27	1.465777	GTGTTTTTGCGGCGGTACTAT	59.534	47.619	9.78	0.00	0.00	2.12
28	29	1.650363	GTGTTTTTGCGGCGGTACT	59.350	52.632	9.78	0.00	0.00	2.73
29	30	1.370778	GGTGTTTTTGCGGCGGTAC	60.371	57.895	9.78	0.00	0.00	3.34
60	61	2.534396	ATCCAGAACCCCAACGGCA	61.534	57.895	0.00	0.00	33.26	5.69
64	65	1.478105	GCATTCATCCAGAACCCCAAC	59.522	52.381	0.00	0.00	39.49	3.77
66	67	0.394216	CGCATTCATCCAGAACCCCA	60.394	55.000	0.00	0.00	39.49	4.96
68	69	1.017387	GTCGCATTCATCCAGAACCC	58.983	55.000	0.00	0.00	39.49	4.11
69	70	0.652592	CGTCGCATTCATCCAGAACC	59.347	55.000	0.00	0.00	39.49	3.62
70	71	1.640428	TCGTCGCATTCATCCAGAAC	58.360	50.000	0.00	0.00	39.49	3.01
74	75	2.101415	AGATCTTCGTCGCATTCATCCA	59.899	45.455	0.00	0.00	0.00	3.41
76	77	2.097007	GCAGATCTTCGTCGCATTCATC	60.097	50.000	0.00	0.00	0.00	2.92
82	83	0.528466	GGATGCAGATCTTCGTCGCA	60.528	55.000	7.09	7.09	34.19	5.10
83	84	1.218230	GGGATGCAGATCTTCGTCGC	61.218	60.000	14.12	14.12	0.00	5.19
127	128	2.747460	GCTGTCGATGGCTTGGCA	60.747	61.111	0.00	0.00	0.00	4.92
130	131	1.416813	GAGACGCTGTCGATGGCTTG	61.417	60.000	10.07	0.21	37.67	4.01
131	132	1.153745	GAGACGCTGTCGATGGCTT	60.154	57.895	10.07	1.91	37.67	4.35
132	133	2.492090	GAGACGCTGTCGATGGCT	59.508	61.111	10.07	0.00	37.67	4.75
133	134	2.583593	GGAGACGCTGTCGATGGC	60.584	66.667	0.00	0.00	37.67	4.40
135	136	1.226802	CAGGGAGACGCTGTCGATG	60.227	63.158	7.49	0.00	39.17	3.84
136	137	2.418910	CCAGGGAGACGCTGTCGAT	61.419	63.158	13.12	0.00	41.84	3.59
137	138	3.062466	CCAGGGAGACGCTGTCGA	61.062	66.667	13.12	0.00	41.84	4.20
138	139	4.803426	GCCAGGGAGACGCTGTCG	62.803	72.222	13.12	2.57	41.84	4.35
139	140	4.459089	GGCCAGGGAGACGCTGTC	62.459	72.222	0.00	2.37	41.84	3.51
145	146	4.106925	CAGCAGGGCCAGGGAGAC	62.107	72.222	6.18	0.00	0.00	3.36
169	170	4.976925	CGGCAGATGGCTAGGGCG	62.977	72.222	4.78	0.00	44.01	6.13
170	171	3.550431	TCGGCAGATGGCTAGGGC	61.550	66.667	4.78	0.00	44.01	5.19
171	172	2.423446	GTCGGCAGATGGCTAGGG	59.577	66.667	4.78	0.00	44.01	3.53
172	173	2.423446	GGTCGGCAGATGGCTAGG	59.577	66.667	4.78	0.00	44.01	3.02
173	174	1.227380	GTGGTCGGCAGATGGCTAG	60.227	63.158	4.78	0.00	44.01	3.42
174	175	2.900273	GTGGTCGGCAGATGGCTA	59.100	61.111	4.78	0.00	44.01	3.93
175	176	4.457496	CGTGGTCGGCAGATGGCT	62.457	66.667	4.78	0.00	44.01	4.75
176	177	4.451150	TCGTGGTCGGCAGATGGC	62.451	66.667	0.00	0.00	43.74	4.40
177	178	2.509336	GTCGTGGTCGGCAGATGG	60.509	66.667	0.00	0.00	41.67	3.51
178	179	2.509336	GGTCGTGGTCGGCAGATG	60.509	66.667	0.00	0.00	44.04	2.90
179	180	3.771160	GGGTCGTGGTCGGCAGAT	61.771	66.667	0.00	0.00	44.04	2.90
490	863	3.950232	CTAGGGTTCCTAGCGCCA	58.050	61.111	2.29	0.00	45.64	5.69
609	995	0.878416	AAATTTTCGCCGCTGCAGTA	59.122	45.000	16.64	0.00	37.32	2.74
610	996	0.664166	CAAATTTTCGCCGCTGCAGT	60.664	50.000	16.64	0.00	37.32	4.40
620	1022	2.410392	GGGGCTAAAACGCAAATTTTCG	59.590	45.455	8.71	8.71	33.80	3.46
793	1202	4.264253	TGCAACAGATAGCATGTTAAGCT	58.736	39.130	0.00	0.00	45.77	3.74
980	1394	5.006941	GCCATCTGCGATTTATGCAAAAATT	59.993	36.000	0.00	0.00	42.70	1.82
1014	1428	3.243201	CCAACTCAGCAAACTCCTTGTTC	60.243	47.826	0.00	0.00	38.03	3.18
1047	1461	2.567615	GGACCATGACAGGTAGTTCAGT	59.432	50.000	0.00	0.00	43.38	3.41
1107	1521	0.471211	TCCCCTTATCGATCGCCCTT	60.471	55.000	11.09	0.00	0.00	3.95
1118	1532	2.386935	GCCAGCTGGGTCCCCTTAT	61.387	63.158	33.46	0.00	39.65	1.73
1349	1765	2.554344	GCAGAATTGTACTCCCCAACCA	60.554	50.000	0.00	0.00	0.00	3.67
1368	1784	2.279741	GTACAAATCCGATGCAGAGCA	58.720	47.619	0.00	0.00	44.86	4.26
1428	1844	6.794534	AGTGGATAGGGTTTTCTCAATCTTT	58.205	36.000	0.00	0.00	0.00	2.52
1538	1954	4.598894	CATCCTGCGCCTCCTCCG	62.599	72.222	4.18	0.00	0.00	4.63
1541	1957	3.160047	CCTCATCCTGCGCCTCCT	61.160	66.667	4.18	0.00	0.00	3.69
1637	2056	1.073923	GGCCCCTCTTCTTCTGTTGAA	59.926	52.381	0.00	0.00	0.00	2.69
1801	2228	2.435805	TCCGAGCCTTCTATGCTTCAAT	59.564	45.455	0.00	0.00	39.69	2.57
2214	2667	8.776376	AAATAAATGTCATCCAATCACCAAAC	57.224	30.769	0.00	0.00	0.00	2.93
2220	2673	9.806203	GTGAATGAAATAAATGTCATCCAATCA	57.194	29.630	0.00	0.00	33.31	2.57
2362	2820	1.078426	CGTTTCCTCCATTCGGGCT	60.078	57.895	0.00	0.00	36.21	5.19
2457	2920	4.816385	AGCCGGTGATTGTCATAATACTTG	59.184	41.667	1.90	0.00	0.00	3.16
2503	2966	2.394632	AGTATAATGGTGGCTCGTCCA	58.605	47.619	0.00	0.00	44.18	4.02
2575	3038	6.746120	TCTAAAGCTCAAAAGAGTACGAGTT	58.254	36.000	0.00	0.00	0.00	3.01
2607	3070	5.527582	GTCTCAATATGGAAACCATTAGCGT	59.472	40.000	8.59	0.00	42.23	5.07
2681	3146	5.106475	GCCTTTCGATAACATGTTTACCACA	60.106	40.000	17.78	0.00	40.71	4.17
2752	3217	0.112995	TGAGGGTAGTGTACACGGGT	59.887	55.000	19.93	5.93	37.12	5.28

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.