Multiple sequence alignment - TraesCS2B01G246000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G246000 chr2B 100.000 3205 0 0 520 3724 250072008 250068804 0.000000e+00 5919.0
1 TraesCS2B01G246000 chr2B 100.000 308 0 0 1 308 250072527 250072220 1.500000e-158 569.0
2 TraesCS2B01G246000 chr2B 100.000 61 0 0 3317 3377 250069154 250069094 3.040000e-21 113.0
3 TraesCS2B01G246000 chr2B 100.000 61 0 0 3374 3434 250069211 250069151 3.040000e-21 113.0
4 TraesCS2B01G246000 chr2D 91.939 2109 87 26 1329 3389 194192668 194190595 0.000000e+00 2876.0
5 TraesCS2B01G246000 chr2D 90.076 393 10 3 888 1256 194193080 194192693 2.010000e-132 483.0
6 TraesCS2B01G246000 chr2D 91.798 317 23 2 520 833 194193413 194193097 4.420000e-119 438.0
7 TraesCS2B01G246000 chr2D 90.850 306 23 4 4 304 194193788 194193483 4.480000e-109 405.0
8 TraesCS2B01G246000 chr2D 95.105 143 7 0 3425 3567 194190338 194190196 3.740000e-55 226.0
9 TraesCS2B01G246000 chr2D 92.063 63 1 3 3374 3435 194190666 194190607 6.630000e-13 86.1
10 TraesCS2B01G246000 chr2A 89.219 1447 80 21 880 2269 208152320 208150893 0.000000e+00 1738.0
11 TraesCS2B01G246000 chr2A 87.689 926 77 13 2266 3165 208142356 208141442 0.000000e+00 1044.0
12 TraesCS2B01G246000 chr2A 89.251 307 29 4 4 308 208153018 208152714 7.550000e-102 381.0
13 TraesCS2B01G246000 chr2A 85.214 257 15 10 3158 3399 208112169 208111921 3.720000e-60 243.0
14 TraesCS2B01G246000 chr2A 95.270 148 7 0 3420 3567 208111941 208111794 6.220000e-58 235.0
15 TraesCS2B01G246000 chr2A 88.776 98 10 1 3601 3698 617222047 617221951 6.530000e-23 119.0
16 TraesCS2B01G246000 chr5A 87.067 549 60 11 1817 2357 606050722 606050177 8.840000e-171 610.0
17 TraesCS2B01G246000 chr5A 80.732 519 66 21 2389 2899 606050181 606049689 1.260000e-99 374.0
18 TraesCS2B01G246000 chr5A 91.623 191 16 0 2136 2326 533281201 533281391 7.930000e-67 265.0
19 TraesCS2B01G246000 chr5A 90.566 106 9 1 3592 3697 395002835 395002939 5.020000e-29 139.0
20 TraesCS2B01G246000 chr5D 86.339 549 64 11 1817 2357 484414200 484413655 4.140000e-164 588.0
21 TraesCS2B01G246000 chr5D 81.574 521 75 17 2389 2899 484413659 484413150 9.630000e-111 411.0
22 TraesCS2B01G246000 chr5D 91.623 191 16 0 2136 2326 418430210 418430400 7.930000e-67 265.0
23 TraesCS2B01G246000 chr5D 88.776 98 8 3 3601 3698 352123688 352123782 2.350000e-22 117.0
24 TraesCS2B01G246000 chr5B 85.818 550 66 12 1817 2357 595623176 595622630 1.160000e-159 573.0
25 TraesCS2B01G246000 chr5B 80.000 520 71 19 2389 2899 595622634 595622139 1.650000e-93 353.0
26 TraesCS2B01G246000 chr5B 91.099 191 17 0 2136 2326 505770386 505770576 3.690000e-65 259.0
27 TraesCS2B01G246000 chr7A 92.021 188 15 0 2136 2323 649478011 649477824 7.930000e-67 265.0
28 TraesCS2B01G246000 chr7A 92.021 188 15 0 2136 2323 649799742 649799555 7.930000e-67 265.0
29 TraesCS2B01G246000 chr7B 92.857 98 6 1 3601 3698 380347061 380346965 1.390000e-29 141.0
30 TraesCS2B01G246000 chr7B 88.776 98 9 2 3601 3698 473346503 473346408 6.530000e-23 119.0
31 TraesCS2B01G246000 chr4D 89.423 104 10 1 3595 3698 360244842 360244944 3.020000e-26 130.0
32 TraesCS2B01G246000 chr4D 89.796 98 8 2 3601 3698 229039541 229039636 1.400000e-24 124.0
33 TraesCS2B01G246000 chr3D 89.899 99 7 3 3601 3698 282671936 282671840 1.400000e-24 124.0
34 TraesCS2B01G246000 chr3A 89.899 99 5 3 3604 3698 544677131 544677228 5.050000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G246000 chr2B 250068804 250072527 3723 True 1678.50 5919 100.000000 1 3724 4 chr2B.!!$R1 3723
1 TraesCS2B01G246000 chr2D 194190196 194193788 3592 True 752.35 2876 91.971833 4 3567 6 chr2D.!!$R1 3563
2 TraesCS2B01G246000 chr2A 208150893 208153018 2125 True 1059.50 1738 89.235000 4 2269 2 chr2A.!!$R4 2265
3 TraesCS2B01G246000 chr2A 208141442 208142356 914 True 1044.00 1044 87.689000 2266 3165 1 chr2A.!!$R1 899
4 TraesCS2B01G246000 chr5A 606049689 606050722 1033 True 492.00 610 83.899500 1817 2899 2 chr5A.!!$R1 1082
5 TraesCS2B01G246000 chr5D 484413150 484414200 1050 True 499.50 588 83.956500 1817 2899 2 chr5D.!!$R1 1082
6 TraesCS2B01G246000 chr5B 595622139 595623176 1037 True 463.00 573 82.909000 1817 2899 2 chr5B.!!$R1 1082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 766 0.033894 AGAGGGACGGAGAGAGGAAC 60.034 60.0 0.0 0.0 0.00 3.62 F
1121 1155 0.104144 TCCACCAGAAAGGGAAGGGA 60.104 55.0 0.0 0.0 43.89 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2687 2775 0.674895 CCTTGCCCTTCTTGTCTCCG 60.675 60.000 0.0 0.0 0.00 4.63 R
2840 2931 1.739466 CTCGCCTCTTGCTTAAATGCA 59.261 47.619 0.0 0.0 41.65 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 4.589908 ACCTCGAGGCAATAAAATTCACT 58.410 39.130 31.56 3.26 39.32 3.41
59 61 3.695816 GAGGCAATAAAATTCACTCGGC 58.304 45.455 0.00 0.00 0.00 5.54
95 97 6.203530 TCTCTGTTGAAACATGTGATTCAGTC 59.796 38.462 11.69 10.14 37.94 3.51
102 105 4.959596 ACATGTGATTCAGTCTGAATGC 57.040 40.909 28.73 20.87 46.20 3.56
153 156 2.016096 GCTCATCTGCAGGTTCCTTCC 61.016 57.143 15.13 0.00 0.00 3.46
159 162 2.089980 CTGCAGGTTCCTTCCAAGATG 58.910 52.381 5.57 0.00 0.00 2.90
161 164 1.467920 CAGGTTCCTTCCAAGATGCC 58.532 55.000 0.00 0.00 0.00 4.40
211 215 0.732571 ACTGTGGCACAACGTTTGAG 59.267 50.000 22.31 9.63 44.16 3.02
213 217 1.308783 TGTGGCACAACGTTTGAGCA 61.309 50.000 19.74 0.00 46.98 4.26
245 249 6.366877 GTGACTCCTATCTAGTAGAAGCTACG 59.633 46.154 3.45 0.00 31.71 3.51
254 258 2.754002 AGTAGAAGCTACGTGGGAAGAC 59.246 50.000 0.00 0.00 0.00 3.01
547 553 1.880027 GGTTGTCGACAAGAGCCAAAT 59.120 47.619 30.38 0.00 36.39 2.32
578 586 6.597562 AGTTACAGAACTACAACCCAAATCA 58.402 36.000 0.00 0.00 44.36 2.57
600 608 2.751837 GGCCCAAGAAGCTTCCCG 60.752 66.667 22.81 13.69 0.00 5.14
601 609 2.351276 GCCCAAGAAGCTTCCCGA 59.649 61.111 22.81 0.00 0.00 5.14
653 662 3.827302 AGCGGGTATACCTGATTCTACTG 59.173 47.826 31.30 4.86 45.36 2.74
705 714 3.054728 TCATTTGGCTAGGATTTGGACGA 60.055 43.478 0.00 0.00 0.00 4.20
745 754 3.618690 ACACAAATAGCTGAGAGGGAC 57.381 47.619 0.00 0.00 0.00 4.46
750 759 0.847373 ATAGCTGAGAGGGACGGAGA 59.153 55.000 0.00 0.00 0.00 3.71
757 766 0.033894 AGAGGGACGGAGAGAGGAAC 60.034 60.000 0.00 0.00 0.00 3.62
759 768 0.114560 AGGGACGGAGAGAGGAACAA 59.885 55.000 0.00 0.00 0.00 2.83
766 775 1.004440 AGAGAGGAACAACTGCCGC 60.004 57.895 0.00 0.00 0.00 6.53
784 793 4.081752 TGCCGCATAATTCAAATTCCAGTT 60.082 37.500 0.00 0.00 0.00 3.16
835 844 5.619132 TTTTAGGGGTATTTCCTAGTCGG 57.381 43.478 0.00 0.00 38.05 4.79
837 846 3.979501 AGGGGTATTTCCTAGTCGGTA 57.020 47.619 0.00 0.00 36.25 4.02
838 847 3.842206 AGGGGTATTTCCTAGTCGGTAG 58.158 50.000 0.00 0.00 36.25 3.18
839 848 2.298446 GGGGTATTTCCTAGTCGGTAGC 59.702 54.545 0.00 0.00 36.25 3.58
840 849 3.229293 GGGTATTTCCTAGTCGGTAGCT 58.771 50.000 0.00 0.00 36.25 3.32
841 850 3.255395 GGGTATTTCCTAGTCGGTAGCTC 59.745 52.174 0.00 0.00 36.25 4.09
842 851 3.887716 GGTATTTCCTAGTCGGTAGCTCA 59.112 47.826 0.00 0.00 0.00 4.26
845 854 1.747709 TCCTAGTCGGTAGCTCACAC 58.252 55.000 0.00 0.00 0.00 3.82
846 855 0.739561 CCTAGTCGGTAGCTCACACC 59.260 60.000 0.00 0.00 0.00 4.16
852 861 3.046280 GGTAGCTCACACCGTAAGC 57.954 57.895 0.00 0.00 36.27 3.09
853 862 0.245539 GGTAGCTCACACCGTAAGCA 59.754 55.000 0.00 0.00 38.51 3.91
854 863 1.337447 GGTAGCTCACACCGTAAGCAA 60.337 52.381 0.00 0.00 38.51 3.91
855 864 2.618053 GTAGCTCACACCGTAAGCAAT 58.382 47.619 0.00 0.00 38.51 3.56
856 865 1.726853 AGCTCACACCGTAAGCAATC 58.273 50.000 0.00 0.00 38.51 2.67
857 866 0.727398 GCTCACACCGTAAGCAATCC 59.273 55.000 0.00 0.00 36.06 3.01
858 867 1.943968 GCTCACACCGTAAGCAATCCA 60.944 52.381 0.00 0.00 36.06 3.41
859 868 2.422597 CTCACACCGTAAGCAATCCAA 58.577 47.619 0.00 0.00 0.00 3.53
860 869 2.811431 CTCACACCGTAAGCAATCCAAA 59.189 45.455 0.00 0.00 0.00 3.28
861 870 3.215151 TCACACCGTAAGCAATCCAAAA 58.785 40.909 0.00 0.00 0.00 2.44
862 871 3.823873 TCACACCGTAAGCAATCCAAAAT 59.176 39.130 0.00 0.00 0.00 1.82
863 872 5.004448 TCACACCGTAAGCAATCCAAAATA 58.996 37.500 0.00 0.00 0.00 1.40
864 873 5.650266 TCACACCGTAAGCAATCCAAAATAT 59.350 36.000 0.00 0.00 0.00 1.28
865 874 6.151985 TCACACCGTAAGCAATCCAAAATATT 59.848 34.615 0.00 0.00 0.00 1.28
866 875 6.472163 CACACCGTAAGCAATCCAAAATATTC 59.528 38.462 0.00 0.00 0.00 1.75
867 876 6.151985 ACACCGTAAGCAATCCAAAATATTCA 59.848 34.615 0.00 0.00 0.00 2.57
868 877 7.032580 CACCGTAAGCAATCCAAAATATTCAA 58.967 34.615 0.00 0.00 0.00 2.69
869 878 7.009174 CACCGTAAGCAATCCAAAATATTCAAC 59.991 37.037 0.00 0.00 0.00 3.18
870 879 7.032580 CCGTAAGCAATCCAAAATATTCAACA 58.967 34.615 0.00 0.00 0.00 3.33
871 880 7.543868 CCGTAAGCAATCCAAAATATTCAACAA 59.456 33.333 0.00 0.00 0.00 2.83
872 881 8.920665 CGTAAGCAATCCAAAATATTCAACAAA 58.079 29.630 0.00 0.00 0.00 2.83
875 884 9.558396 AAGCAATCCAAAATATTCAACAAAGAA 57.442 25.926 0.00 0.00 0.00 2.52
876 885 9.558396 AGCAATCCAAAATATTCAACAAAGAAA 57.442 25.926 0.00 0.00 0.00 2.52
899 908 1.000163 AGTCGGTAGCTCACACAGTTG 60.000 52.381 0.00 0.00 0.00 3.16
1118 1152 1.280421 CTCCTCCACCAGAAAGGGAAG 59.720 57.143 0.00 0.00 43.89 3.46
1119 1153 0.329596 CCTCCACCAGAAAGGGAAGG 59.670 60.000 0.00 0.00 43.89 3.46
1120 1154 0.329596 CTCCACCAGAAAGGGAAGGG 59.670 60.000 0.00 0.00 43.89 3.95
1121 1155 0.104144 TCCACCAGAAAGGGAAGGGA 60.104 55.000 0.00 0.00 43.89 4.20
1122 1156 0.777446 CCACCAGAAAGGGAAGGGAA 59.223 55.000 0.00 0.00 43.89 3.97
1170 1204 2.227556 GTCAAAATGGTACGCGTTTCG 58.772 47.619 20.78 0.00 45.38 3.46
1183 1217 1.269166 CGTTTCGTTCCTCTCCATCG 58.731 55.000 0.00 0.00 0.00 3.84
1223 1257 1.148310 GTCATATCCGTGCCAATCCG 58.852 55.000 0.00 0.00 0.00 4.18
1247 1281 1.220529 GTTTTCCCTGCTTTGCTTGC 58.779 50.000 0.00 0.00 0.00 4.01
1266 1300 1.571215 CTACGTGGGTTTTCCGTGGC 61.571 60.000 0.00 0.00 41.82 5.01
1280 1321 1.582968 GTGGCGGTCTGTTCGTAGA 59.417 57.895 0.00 0.00 0.00 2.59
1282 1323 0.454600 TGGCGGTCTGTTCGTAGATC 59.545 55.000 0.00 0.00 35.04 2.75
1290 1331 5.334260 CGGTCTGTTCGTAGATCCTAGATTC 60.334 48.000 0.00 0.00 35.04 2.52
1327 1368 0.319555 TCCCTTCGAGTGCTTTGACG 60.320 55.000 0.00 0.00 0.00 4.35
1339 1380 1.529865 GCTTTGACGTGTAGGGTTGAC 59.470 52.381 0.00 0.00 0.00 3.18
1349 1390 1.396653 TAGGGTTGACGCTAGCCTAC 58.603 55.000 9.66 3.12 43.03 3.18
1452 1493 8.018520 CGAGTTATAGATCTCTGAACCATGTAC 58.981 40.741 0.00 0.00 0.00 2.90
1455 1496 8.589338 GTTATAGATCTCTGAACCATGTACCAT 58.411 37.037 0.00 0.00 0.00 3.55
1494 1536 9.618890 ACTGTATATTTGCATGAGATTTGTACT 57.381 29.630 0.00 0.00 0.00 2.73
1567 1630 1.812922 CGCGCTCTTGGCTTGAGAT 60.813 57.895 5.56 0.00 39.13 2.75
1577 1640 8.387217 GCTCTTGGCTTGAGATGGAATCAATC 62.387 46.154 10.58 0.00 41.38 2.67
1618 1681 6.456795 CAAATCTAATTTGGTCTTCCCTCC 57.543 41.667 4.80 0.00 44.44 4.30
1695 1758 4.488790 CCTTGTCAAGGCTGTGCT 57.511 55.556 18.66 0.00 42.78 4.40
1699 1762 1.002033 CTTGTCAAGGCTGTGCTTCAC 60.002 52.381 4.52 0.00 34.56 3.18
1713 1776 3.536158 GCTTCACGCAACTTCACATTA 57.464 42.857 0.00 0.00 38.92 1.90
1726 1789 8.331022 GCAACTTCACATTACATGATACTACTG 58.669 37.037 0.00 0.00 0.00 2.74
1751 1814 2.749621 CCTGATCAGTAAAACTGGGCAC 59.250 50.000 21.11 0.00 45.94 5.01
1764 1828 2.437359 GGCACGCATTCCTCAGCT 60.437 61.111 0.00 0.00 0.00 4.24
1777 1841 4.842531 TCCTCAGCTGATAACCATTTGA 57.157 40.909 18.63 0.45 0.00 2.69
1842 1907 7.365497 TCTCTCTTGCCAAGTGATATATCAA 57.635 36.000 16.97 0.00 38.75 2.57
1846 1912 8.704668 TCTCTTGCCAAGTGATATATCAACTTA 58.295 33.333 16.97 6.10 38.75 2.24
2088 2163 2.035066 GCCATCCAAACATGTATCCAGC 59.965 50.000 0.00 0.00 0.00 4.85
2091 2166 4.403432 CCATCCAAACATGTATCCAGCTTT 59.597 41.667 0.00 0.00 0.00 3.51
2092 2167 5.450965 CCATCCAAACATGTATCCAGCTTTC 60.451 44.000 0.00 0.00 0.00 2.62
2093 2168 4.661222 TCCAAACATGTATCCAGCTTTCA 58.339 39.130 0.00 0.00 0.00 2.69
2094 2169 5.263599 TCCAAACATGTATCCAGCTTTCAT 58.736 37.500 0.00 0.00 0.00 2.57
2096 2171 5.450965 CCAAACATGTATCCAGCTTTCATCC 60.451 44.000 0.00 0.00 0.00 3.51
2099 2174 5.263599 ACATGTATCCAGCTTTCATCCAAA 58.736 37.500 0.00 0.00 0.00 3.28
2105 2180 4.526970 TCCAGCTTTCATCCAAACCTATC 58.473 43.478 0.00 0.00 0.00 2.08
2227 2302 2.613223 GGTCACTCAGTACAAGAAGGGC 60.613 54.545 0.00 0.00 0.00 5.19
2239 2314 2.303022 CAAGAAGGGCAAGGACAGTCTA 59.697 50.000 0.00 0.00 0.00 2.59
2379 2454 7.817478 CCTGCCAACACGATATATATAGTTCAA 59.183 37.037 5.81 0.00 0.00 2.69
2420 2495 0.602562 ACCAATTCAACGCCATGGTG 59.397 50.000 23.88 23.88 42.57 4.17
2450 2525 3.812609 TGTGCCTGTGTAGTGTATTTGTG 59.187 43.478 0.00 0.00 0.00 3.33
2473 2552 6.536582 GTGTGATAAAGATTAGAAGCAGCTGA 59.463 38.462 20.43 0.00 0.00 4.26
2687 2775 1.135315 TGCAAGCATTTTGAGATCGGC 60.135 47.619 0.00 0.00 0.00 5.54
2757 2845 1.071471 CTGGAGTGGTGGTGGTCAC 59.929 63.158 0.00 0.00 45.34 3.67
2840 2931 4.974645 TGTATCCAAACTCCTGTGTCTT 57.025 40.909 0.00 0.00 0.00 3.01
2915 3006 7.119709 TCCTCTTTCATTCCGTATAATGTCA 57.880 36.000 0.00 0.00 37.94 3.58
2916 3007 7.561251 TCCTCTTTCATTCCGTATAATGTCAA 58.439 34.615 0.00 0.00 37.94 3.18
2918 3009 8.499162 CCTCTTTCATTCCGTATAATGTCAATC 58.501 37.037 0.00 0.00 37.94 2.67
2919 3010 8.956533 TCTTTCATTCCGTATAATGTCAATCA 57.043 30.769 0.00 0.00 37.94 2.57
2920 3011 9.389755 TCTTTCATTCCGTATAATGTCAATCAA 57.610 29.630 0.00 0.00 37.94 2.57
2921 3012 9.438291 CTTTCATTCCGTATAATGTCAATCAAC 57.562 33.333 0.00 0.00 37.94 3.18
2923 3014 8.365399 TCATTCCGTATAATGTCAATCAACTC 57.635 34.615 0.00 0.00 37.94 3.01
2924 3015 7.441157 TCATTCCGTATAATGTCAATCAACTCC 59.559 37.037 0.00 0.00 37.94 3.85
2925 3016 6.228616 TCCGTATAATGTCAATCAACTCCA 57.771 37.500 0.00 0.00 0.00 3.86
2926 3017 6.826668 TCCGTATAATGTCAATCAACTCCAT 58.173 36.000 0.00 0.00 0.00 3.41
2928 3019 6.073058 CCGTATAATGTCAATCAACTCCATGG 60.073 42.308 4.97 4.97 0.00 3.66
2929 3020 6.483307 CGTATAATGTCAATCAACTCCATGGT 59.517 38.462 12.58 0.00 0.00 3.55
2930 3021 6.704289 ATAATGTCAATCAACTCCATGGTG 57.296 37.500 12.58 12.42 33.88 4.17
2931 3022 3.507162 TGTCAATCAACTCCATGGTGT 57.493 42.857 13.73 13.73 34.34 4.16
2932 3023 3.831323 TGTCAATCAACTCCATGGTGTT 58.169 40.909 23.35 23.35 34.34 3.32
2934 3025 5.380900 TGTCAATCAACTCCATGGTGTTAA 58.619 37.500 27.14 17.15 34.34 2.01
2935 3026 5.830457 TGTCAATCAACTCCATGGTGTTAAA 59.170 36.000 27.14 19.66 34.34 1.52
2936 3027 6.322456 TGTCAATCAACTCCATGGTGTTAAAA 59.678 34.615 27.14 17.59 34.34 1.52
2937 3028 7.015098 TGTCAATCAACTCCATGGTGTTAAAAT 59.985 33.333 27.14 18.75 34.34 1.82
2938 3029 7.329226 GTCAATCAACTCCATGGTGTTAAAATG 59.671 37.037 27.14 21.95 34.34 2.32
2941 3032 7.118496 TCAACTCCATGGTGTTAAAATGTTT 57.882 32.000 27.14 4.27 34.34 2.83
2942 3033 7.206687 TCAACTCCATGGTGTTAAAATGTTTC 58.793 34.615 27.14 0.00 34.34 2.78
2943 3034 6.976934 ACTCCATGGTGTTAAAATGTTTCT 57.023 33.333 13.73 0.00 0.00 2.52
2944 3035 8.356657 CAACTCCATGGTGTTAAAATGTTTCTA 58.643 33.333 27.14 0.00 31.70 2.10
2945 3036 8.110860 ACTCCATGGTGTTAAAATGTTTCTAG 57.889 34.615 13.73 0.00 0.00 2.43
2946 3037 7.942341 ACTCCATGGTGTTAAAATGTTTCTAGA 59.058 33.333 13.73 0.00 0.00 2.43
2947 3038 8.335532 TCCATGGTGTTAAAATGTTTCTAGAG 57.664 34.615 12.58 0.00 0.00 2.43
3096 3199 5.843421 TGGGGATTTGAAATCAAGAAGGAAA 59.157 36.000 18.55 0.00 37.15 3.13
3131 3242 8.664211 AAATTCTATCATAACTTTCCTCCGTC 57.336 34.615 0.00 0.00 0.00 4.79
3169 3280 5.505780 TCCCATGAATCAAAACGGAATAGT 58.494 37.500 0.00 0.00 0.00 2.12
3184 3295 7.834881 ACGGAATAGTTTCTACATATCCTCA 57.165 36.000 0.00 0.00 32.16 3.86
3190 3301 9.770097 AATAGTTTCTACATATCCTCACACATG 57.230 33.333 0.00 0.00 0.00 3.21
3209 3320 8.131100 CACACATGATTCCCATCTTAATACAAC 58.869 37.037 0.00 0.00 31.94 3.32
3221 3332 8.616076 CCATCTTAATACAACTTCCTGCTTTAG 58.384 37.037 0.00 0.00 0.00 1.85
3227 3338 0.992695 ACTTCCTGCTTTAGACCCCC 59.007 55.000 0.00 0.00 0.00 5.40
3230 3341 1.213296 TCCTGCTTTAGACCCCCATC 58.787 55.000 0.00 0.00 0.00 3.51
3238 3349 2.680439 TAGACCCCCATCCCTCTTTT 57.320 50.000 0.00 0.00 0.00 2.27
3240 3351 0.999712 GACCCCCATCCCTCTTTTGA 59.000 55.000 0.00 0.00 0.00 2.69
3241 3352 1.357761 GACCCCCATCCCTCTTTTGAA 59.642 52.381 0.00 0.00 0.00 2.69
3362 3473 2.588027 TCGCATTGTAGATTACGCCA 57.412 45.000 0.00 0.00 0.00 5.69
3365 3476 4.816392 TCGCATTGTAGATTACGCCATAT 58.184 39.130 0.00 0.00 0.00 1.78
3368 3479 6.530181 TCGCATTGTAGATTACGCCATATAAG 59.470 38.462 0.00 0.00 0.00 1.73
3370 3481 6.816640 GCATTGTAGATTACGCCATATAAGGA 59.183 38.462 0.00 0.00 0.00 3.36
3371 3482 7.010552 GCATTGTAGATTACGCCATATAAGGAG 59.989 40.741 0.00 0.00 34.32 3.69
3375 3486 6.435292 AGATTACGCCATATAAGGAGGTTT 57.565 37.500 0.00 0.00 32.16 3.27
3384 3495 7.275920 GCCATATAAGGAGGTTTCATCGATAT 58.724 38.462 0.00 0.00 0.00 1.63
3389 3500 4.227197 AGGAGGTTTCATCGATATGAGGT 58.773 43.478 0.00 0.00 42.97 3.85
3391 3502 5.131142 AGGAGGTTTCATCGATATGAGGTTT 59.869 40.000 0.00 0.00 42.97 3.27
3392 3503 5.467063 GGAGGTTTCATCGATATGAGGTTTC 59.533 44.000 0.00 0.00 42.97 2.78
3393 3504 5.368989 AGGTTTCATCGATATGAGGTTTCC 58.631 41.667 0.00 0.00 42.97 3.13
3394 3505 5.131142 AGGTTTCATCGATATGAGGTTTCCT 59.869 40.000 0.00 0.00 42.97 3.36
3396 3507 6.424207 GGTTTCATCGATATGAGGTTTCCTAC 59.576 42.308 0.00 0.00 42.97 3.18
3397 3508 6.978674 TTCATCGATATGAGGTTTCCTACT 57.021 37.500 0.00 0.00 42.97 2.57
3398 3509 6.576662 TCATCGATATGAGGTTTCCTACTC 57.423 41.667 0.00 0.00 37.20 2.59
3400 3511 6.778069 TCATCGATATGAGGTTTCCTACTCTT 59.222 38.462 0.00 0.00 37.20 2.85
3401 3512 6.636562 TCGATATGAGGTTTCCTACTCTTC 57.363 41.667 0.00 0.00 31.76 2.87
3402 3513 5.238868 TCGATATGAGGTTTCCTACTCTTCG 59.761 44.000 0.00 0.00 31.76 3.79
3403 3514 3.528597 ATGAGGTTTCCTACTCTTCGC 57.471 47.619 0.00 0.00 31.76 4.70
3404 3515 2.244695 TGAGGTTTCCTACTCTTCGCA 58.755 47.619 0.00 0.00 31.76 5.10
3407 3518 3.600388 AGGTTTCCTACTCTTCGCATTG 58.400 45.455 0.00 0.00 28.47 2.82
3408 3519 3.008049 AGGTTTCCTACTCTTCGCATTGT 59.992 43.478 0.00 0.00 28.47 2.71
3409 3520 4.222145 AGGTTTCCTACTCTTCGCATTGTA 59.778 41.667 0.00 0.00 28.47 2.41
3410 3521 4.567159 GGTTTCCTACTCTTCGCATTGTAG 59.433 45.833 0.00 0.00 34.02 2.74
3412 3523 5.854010 TTCCTACTCTTCGCATTGTAGAT 57.146 39.130 0.00 0.00 35.66 1.98
3415 3526 6.736123 TCCTACTCTTCGCATTGTAGATTAC 58.264 40.000 0.00 0.00 35.66 1.89
3416 3527 5.625721 CCTACTCTTCGCATTGTAGATTACG 59.374 44.000 0.00 0.00 35.66 3.18
3417 3528 3.797256 ACTCTTCGCATTGTAGATTACGC 59.203 43.478 0.00 0.00 0.00 4.42
3418 3529 3.120792 TCTTCGCATTGTAGATTACGCC 58.879 45.455 0.00 0.00 0.00 5.68
3420 3531 3.106242 TCGCATTGTAGATTACGCCAT 57.894 42.857 0.00 0.00 0.00 4.40
3421 3532 4.245845 TCGCATTGTAGATTACGCCATA 57.754 40.909 0.00 0.00 0.00 2.74
3422 3533 4.816392 TCGCATTGTAGATTACGCCATAT 58.184 39.130 0.00 0.00 0.00 1.78
3423 3534 5.956642 TCGCATTGTAGATTACGCCATATA 58.043 37.500 0.00 0.00 0.00 0.86
3445 3777 3.351794 GGAGGTTTCCTACTCCCAAAG 57.648 52.381 0.00 0.00 46.01 2.77
3500 3832 1.377725 CATCGCCCCTTTGAGCACT 60.378 57.895 0.00 0.00 0.00 4.40
3501 3833 1.078143 ATCGCCCCTTTGAGCACTC 60.078 57.895 0.00 0.00 0.00 3.51
3502 3834 1.557269 ATCGCCCCTTTGAGCACTCT 61.557 55.000 0.00 0.00 0.00 3.24
3590 3922 3.744559 GCACAAGCTCCCAAACGA 58.255 55.556 0.00 0.00 37.91 3.85
3591 3923 1.576421 GCACAAGCTCCCAAACGAG 59.424 57.895 0.00 0.00 37.91 4.18
3592 3924 0.884704 GCACAAGCTCCCAAACGAGA 60.885 55.000 0.00 0.00 37.91 4.04
3593 3925 1.593196 CACAAGCTCCCAAACGAGAA 58.407 50.000 0.00 0.00 30.97 2.87
3594 3926 1.532868 CACAAGCTCCCAAACGAGAAG 59.467 52.381 0.00 0.00 30.97 2.85
3595 3927 1.160137 CAAGCTCCCAAACGAGAAGG 58.840 55.000 0.00 0.00 30.97 3.46
3596 3928 1.056660 AAGCTCCCAAACGAGAAGGA 58.943 50.000 0.00 0.00 30.97 3.36
3597 3929 0.321996 AGCTCCCAAACGAGAAGGAC 59.678 55.000 0.00 0.00 30.97 3.85
3598 3930 1.014564 GCTCCCAAACGAGAAGGACG 61.015 60.000 0.00 0.00 30.97 4.79
3599 3931 1.005394 TCCCAAACGAGAAGGACGC 60.005 57.895 0.00 0.00 0.00 5.19
3600 3932 1.301401 CCCAAACGAGAAGGACGCA 60.301 57.895 0.00 0.00 0.00 5.24
3601 3933 1.291877 CCCAAACGAGAAGGACGCAG 61.292 60.000 0.00 0.00 0.00 5.18
3602 3934 1.493311 CAAACGAGAAGGACGCAGC 59.507 57.895 0.00 0.00 0.00 5.25
3603 3935 0.946221 CAAACGAGAAGGACGCAGCT 60.946 55.000 0.00 0.00 0.00 4.24
3604 3936 0.249911 AAACGAGAAGGACGCAGCTT 60.250 50.000 0.00 0.00 0.00 3.74
3605 3937 0.667792 AACGAGAAGGACGCAGCTTC 60.668 55.000 0.00 0.00 0.00 3.86
3606 3938 1.080501 CGAGAAGGACGCAGCTTCA 60.081 57.895 0.69 0.00 30.70 3.02
3607 3939 1.075425 CGAGAAGGACGCAGCTTCAG 61.075 60.000 0.69 0.00 30.70 3.02
3608 3940 0.037790 GAGAAGGACGCAGCTTCAGT 60.038 55.000 0.69 0.00 30.70 3.41
3609 3941 0.320247 AGAAGGACGCAGCTTCAGTG 60.320 55.000 0.69 0.00 30.70 3.66
3610 3942 0.319900 GAAGGACGCAGCTTCAGTGA 60.320 55.000 0.69 0.00 29.15 3.41
3611 3943 0.601311 AAGGACGCAGCTTCAGTGAC 60.601 55.000 0.69 0.00 0.00 3.67
3612 3944 1.300931 GGACGCAGCTTCAGTGACA 60.301 57.895 0.69 0.00 0.00 3.58
3613 3945 0.671781 GGACGCAGCTTCAGTGACAT 60.672 55.000 0.69 0.00 0.00 3.06
3614 3946 1.404181 GGACGCAGCTTCAGTGACATA 60.404 52.381 0.69 0.00 0.00 2.29
3615 3947 2.337583 GACGCAGCTTCAGTGACATAA 58.662 47.619 0.00 0.00 0.00 1.90
3616 3948 2.069273 ACGCAGCTTCAGTGACATAAC 58.931 47.619 0.00 0.00 0.00 1.89
3617 3949 2.289072 ACGCAGCTTCAGTGACATAACT 60.289 45.455 0.00 0.00 0.00 2.24
3618 3950 2.738846 CGCAGCTTCAGTGACATAACTT 59.261 45.455 0.00 0.00 0.00 2.66
3619 3951 3.424039 CGCAGCTTCAGTGACATAACTTG 60.424 47.826 0.00 0.00 0.00 3.16
3620 3952 3.669023 GCAGCTTCAGTGACATAACTTGC 60.669 47.826 0.00 0.00 0.00 4.01
3621 3953 3.499537 CAGCTTCAGTGACATAACTTGCA 59.500 43.478 0.00 0.00 0.00 4.08
3622 3954 3.750130 AGCTTCAGTGACATAACTTGCAG 59.250 43.478 0.00 0.00 0.00 4.41
3623 3955 3.120060 GCTTCAGTGACATAACTTGCAGG 60.120 47.826 0.00 0.00 0.00 4.85
3624 3956 3.769739 TCAGTGACATAACTTGCAGGT 57.230 42.857 0.00 0.00 0.00 4.00
3625 3957 3.402110 TCAGTGACATAACTTGCAGGTG 58.598 45.455 0.65 0.00 0.00 4.00
3626 3958 2.095567 CAGTGACATAACTTGCAGGTGC 60.096 50.000 0.65 0.00 42.50 5.01
3636 3968 2.203337 GCAGGTGCAGTTGGGTCA 60.203 61.111 0.00 0.00 41.59 4.02
3637 3969 2.555547 GCAGGTGCAGTTGGGTCAC 61.556 63.158 0.00 0.00 41.59 3.67
3638 3970 1.149174 CAGGTGCAGTTGGGTCACT 59.851 57.895 0.00 0.00 0.00 3.41
3639 3971 1.149174 AGGTGCAGTTGGGTCACTG 59.851 57.895 0.00 0.00 46.15 3.66
3640 3972 1.148273 GGTGCAGTTGGGTCACTGA 59.852 57.895 5.01 0.00 46.29 3.41
3641 3973 1.166531 GGTGCAGTTGGGTCACTGAC 61.167 60.000 5.01 0.00 46.29 3.51
3642 3974 0.463654 GTGCAGTTGGGTCACTGACA 60.464 55.000 11.34 0.35 46.29 3.58
3643 3975 0.473755 TGCAGTTGGGTCACTGACAT 59.526 50.000 11.34 0.00 46.29 3.06
3644 3976 1.696884 TGCAGTTGGGTCACTGACATA 59.303 47.619 11.34 0.00 46.29 2.29
3645 3977 2.105649 TGCAGTTGGGTCACTGACATAA 59.894 45.455 11.34 2.85 46.29 1.90
3646 3978 2.744202 GCAGTTGGGTCACTGACATAAG 59.256 50.000 11.34 0.00 46.29 1.73
3647 3979 3.338249 CAGTTGGGTCACTGACATAAGG 58.662 50.000 11.34 0.00 46.29 2.69
3648 3980 2.305927 AGTTGGGTCACTGACATAAGGG 59.694 50.000 11.34 0.00 33.68 3.95
3649 3981 0.618458 TGGGTCACTGACATAAGGGC 59.382 55.000 11.34 0.00 33.68 5.19
3650 3982 0.107165 GGGTCACTGACATAAGGGCC 60.107 60.000 11.34 0.00 33.68 5.80
3651 3983 0.618458 GGTCACTGACATAAGGGCCA 59.382 55.000 6.18 0.00 33.68 5.36
3652 3984 1.407437 GGTCACTGACATAAGGGCCAG 60.407 57.143 6.18 0.00 33.68 4.85
3653 3985 1.555075 GTCACTGACATAAGGGCCAGA 59.445 52.381 6.18 0.00 32.09 3.86
3654 3986 2.171448 GTCACTGACATAAGGGCCAGAT 59.829 50.000 6.18 0.00 32.09 2.90
3655 3987 2.171237 TCACTGACATAAGGGCCAGATG 59.829 50.000 6.18 11.32 0.00 2.90
3656 3988 1.133976 ACTGACATAAGGGCCAGATGC 60.134 52.381 15.43 10.03 40.16 3.91
3657 3989 1.142465 CTGACATAAGGGCCAGATGCT 59.858 52.381 15.43 5.40 40.92 3.79
3658 3990 1.565759 TGACATAAGGGCCAGATGCTT 59.434 47.619 15.43 0.00 40.92 3.91
3659 3991 1.952296 GACATAAGGGCCAGATGCTTG 59.048 52.381 15.43 0.00 40.92 4.01
3660 3992 1.285962 ACATAAGGGCCAGATGCTTGT 59.714 47.619 15.43 0.00 40.92 3.16
3661 3993 2.291800 ACATAAGGGCCAGATGCTTGTT 60.292 45.455 15.43 0.00 40.92 2.83
3662 3994 1.838112 TAAGGGCCAGATGCTTGTTG 58.162 50.000 6.18 0.00 40.92 3.33
3663 3995 0.901580 AAGGGCCAGATGCTTGTTGG 60.902 55.000 6.18 0.00 40.92 3.77
3664 3996 2.353610 GGGCCAGATGCTTGTTGGG 61.354 63.158 4.39 0.00 40.92 4.12
3665 3997 2.575461 GCCAGATGCTTGTTGGGC 59.425 61.111 0.00 0.00 36.87 5.36
3666 3998 3.010413 GCCAGATGCTTGTTGGGCC 62.010 63.158 0.00 0.00 35.42 5.80
3667 3999 2.353610 CCAGATGCTTGTTGGGCCC 61.354 63.158 17.59 17.59 0.00 5.80
3668 4000 1.607178 CAGATGCTTGTTGGGCCCA 60.607 57.895 24.45 24.45 0.00 5.36
3669 4001 1.607467 AGATGCTTGTTGGGCCCAC 60.607 57.895 28.70 20.43 0.00 4.61
3670 4002 1.907807 GATGCTTGTTGGGCCCACA 60.908 57.895 28.70 22.97 0.00 4.17
3671 4003 1.229272 ATGCTTGTTGGGCCCACAT 60.229 52.632 28.70 21.70 0.00 3.21
3672 4004 1.546589 ATGCTTGTTGGGCCCACATG 61.547 55.000 28.70 25.50 0.00 3.21
3673 4005 2.209315 GCTTGTTGGGCCCACATGT 61.209 57.895 28.70 0.00 0.00 3.21
3674 4006 1.757423 GCTTGTTGGGCCCACATGTT 61.757 55.000 28.70 0.00 0.00 2.71
3675 4007 1.626686 CTTGTTGGGCCCACATGTTA 58.373 50.000 28.70 5.47 0.00 2.41
3676 4008 1.545582 CTTGTTGGGCCCACATGTTAG 59.454 52.381 28.70 15.45 0.00 2.34
3677 4009 0.480690 TGTTGGGCCCACATGTTAGT 59.519 50.000 28.70 0.00 0.00 2.24
3678 4010 0.887933 GTTGGGCCCACATGTTAGTG 59.112 55.000 28.70 0.00 39.21 2.74
3679 4011 0.774276 TTGGGCCCACATGTTAGTGA 59.226 50.000 28.70 1.58 42.05 3.41
3680 4012 0.037590 TGGGCCCACATGTTAGTGAC 59.962 55.000 24.45 0.00 42.05 3.67
3681 4013 0.679960 GGGCCCACATGTTAGTGACC 60.680 60.000 19.95 0.00 42.05 4.02
3682 4014 0.679960 GGCCCACATGTTAGTGACCC 60.680 60.000 0.00 0.00 42.05 4.46
3683 4015 0.037590 GCCCACATGTTAGTGACCCA 59.962 55.000 0.00 0.00 42.05 4.51
3684 4016 1.546773 GCCCACATGTTAGTGACCCAA 60.547 52.381 0.00 0.00 42.05 4.12
3685 4017 2.159382 CCCACATGTTAGTGACCCAAC 58.841 52.381 0.00 0.00 42.05 3.77
3686 4018 2.224769 CCCACATGTTAGTGACCCAACT 60.225 50.000 0.00 0.00 42.05 3.16
3687 4019 2.813754 CCACATGTTAGTGACCCAACTG 59.186 50.000 0.00 0.00 42.05 3.16
3688 4020 2.226437 CACATGTTAGTGACCCAACTGC 59.774 50.000 0.00 0.00 42.05 4.40
3689 4021 2.158682 ACATGTTAGTGACCCAACTGCA 60.159 45.455 0.00 0.00 0.00 4.41
3690 4022 1.961793 TGTTAGTGACCCAACTGCAC 58.038 50.000 0.00 0.00 0.00 4.57
3691 4023 1.235724 GTTAGTGACCCAACTGCACC 58.764 55.000 0.00 0.00 33.14 5.01
3692 4024 1.136828 TTAGTGACCCAACTGCACCT 58.863 50.000 0.00 0.00 33.14 4.00
3693 4025 0.396435 TAGTGACCCAACTGCACCTG 59.604 55.000 0.00 0.00 33.14 4.00
3694 4026 2.203337 TGACCCAACTGCACCTGC 60.203 61.111 0.00 0.00 42.50 4.85
3706 4038 4.126908 ACCTGCAGTGAGAGAGGG 57.873 61.111 13.81 0.00 0.00 4.30
3707 4039 1.611851 ACCTGCAGTGAGAGAGGGG 60.612 63.158 13.81 0.00 0.00 4.79
3708 4040 2.365586 CCTGCAGTGAGAGAGGGGG 61.366 68.421 13.81 0.00 0.00 5.40
3709 4041 3.005539 TGCAGTGAGAGAGGGGGC 61.006 66.667 0.00 0.00 0.00 5.80
3710 4042 3.791586 GCAGTGAGAGAGGGGGCC 61.792 72.222 0.00 0.00 0.00 5.80
3711 4043 2.284921 CAGTGAGAGAGGGGGCCA 60.285 66.667 4.39 0.00 0.00 5.36
3712 4044 1.920325 CAGTGAGAGAGGGGGCCAA 60.920 63.158 4.39 0.00 0.00 4.52
3713 4045 1.614824 AGTGAGAGAGGGGGCCAAG 60.615 63.158 4.39 0.00 0.00 3.61
3714 4046 2.285668 TGAGAGAGGGGGCCAAGG 60.286 66.667 4.39 0.00 0.00 3.61
3715 4047 3.803162 GAGAGAGGGGGCCAAGGC 61.803 72.222 4.39 1.52 41.06 4.35
3716 4048 4.682714 AGAGAGGGGGCCAAGGCA 62.683 66.667 13.87 0.00 44.11 4.75
3717 4049 3.661648 GAGAGGGGGCCAAGGCAA 61.662 66.667 13.87 0.00 44.11 4.52
3718 4050 3.946126 GAGAGGGGGCCAAGGCAAC 62.946 68.421 13.87 4.96 44.11 4.17
3719 4051 4.299796 GAGGGGGCCAAGGCAACA 62.300 66.667 13.87 0.00 44.11 3.33
3720 4052 3.826265 GAGGGGGCCAAGGCAACAA 62.826 63.158 13.87 0.00 44.11 2.83
3721 4053 3.313524 GGGGGCCAAGGCAACAAG 61.314 66.667 13.87 0.00 44.11 3.16
3722 4054 4.007644 GGGGCCAAGGCAACAAGC 62.008 66.667 13.87 0.00 44.11 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.653835 AAGCTACTTCCCCAATCTTCC 57.346 47.619 0.00 0.00 0.00 3.46
1 2 4.991687 CGATAAGCTACTTCCCCAATCTTC 59.008 45.833 0.00 0.00 0.00 2.87
2 3 4.743955 GCGATAAGCTACTTCCCCAATCTT 60.744 45.833 0.00 0.00 44.04 2.40
55 57 2.224523 ACAGAGAAACATGGAAAGCCGA 60.225 45.455 0.00 0.00 36.79 5.54
91 93 2.225019 GTCACACCTTGCATTCAGACTG 59.775 50.000 0.00 0.00 0.00 3.51
95 97 3.181488 TGTTTGTCACACCTTGCATTCAG 60.181 43.478 0.00 0.00 0.00 3.02
159 162 3.454371 TTCCTAACTCGATGCTAAGGC 57.546 47.619 0.00 0.00 39.26 4.35
161 164 5.221342 ACCAGATTCCTAACTCGATGCTAAG 60.221 44.000 0.00 0.00 0.00 2.18
229 233 4.434545 TCCCACGTAGCTTCTACTAGAT 57.565 45.455 0.00 0.00 0.00 1.98
245 249 6.757478 GCTTAAGTGACTATAAGTCTTCCCAC 59.243 42.308 4.02 0.00 45.27 4.61
547 553 7.670979 TGGGTTGTAGTTCTGTAACTATAGACA 59.329 37.037 6.78 0.17 46.98 3.41
578 586 1.618074 GGAAGCTTCTTGGGCCTTGAT 60.618 52.381 25.05 0.00 0.00 2.57
638 646 9.245481 GCTATAAGTACCAGTAGAATCAGGTAT 57.755 37.037 0.00 0.00 38.73 2.73
653 662 8.758715 CAAAACTATACAACGGCTATAAGTACC 58.241 37.037 0.00 0.00 0.00 3.34
727 736 1.482593 CCGTCCCTCTCAGCTATTTGT 59.517 52.381 0.00 0.00 0.00 2.83
729 738 2.035632 CTCCGTCCCTCTCAGCTATTT 58.964 52.381 0.00 0.00 0.00 1.40
745 754 0.390472 GGCAGTTGTTCCTCTCTCCG 60.390 60.000 0.00 0.00 0.00 4.63
750 759 0.613260 TATGCGGCAGTTGTTCCTCT 59.387 50.000 9.25 0.00 0.00 3.69
757 766 4.268405 GGAATTTGAATTATGCGGCAGTTG 59.732 41.667 9.25 0.00 0.00 3.16
759 768 3.446873 TGGAATTTGAATTATGCGGCAGT 59.553 39.130 9.25 0.00 0.00 4.40
766 775 9.826574 ATGGAATCAACTGGAATTTGAATTATG 57.173 29.630 0.00 0.00 36.57 1.90
834 843 0.245539 TGCTTACGGTGTGAGCTACC 59.754 55.000 13.73 0.00 43.96 3.18
835 844 2.074547 TTGCTTACGGTGTGAGCTAC 57.925 50.000 13.73 0.00 43.96 3.58
837 846 1.676014 GGATTGCTTACGGTGTGAGCT 60.676 52.381 13.73 0.00 43.96 4.09
838 847 0.727398 GGATTGCTTACGGTGTGAGC 59.273 55.000 6.75 6.75 43.90 4.26
839 848 2.093306 TGGATTGCTTACGGTGTGAG 57.907 50.000 0.00 0.00 0.00 3.51
840 849 2.552599 TTGGATTGCTTACGGTGTGA 57.447 45.000 0.00 0.00 0.00 3.58
841 850 3.634568 TTTTGGATTGCTTACGGTGTG 57.365 42.857 0.00 0.00 0.00 3.82
842 851 6.151985 TGAATATTTTGGATTGCTTACGGTGT 59.848 34.615 0.00 0.00 0.00 4.16
845 854 7.032580 TGTTGAATATTTTGGATTGCTTACGG 58.967 34.615 0.00 0.00 0.00 4.02
846 855 8.459521 TTGTTGAATATTTTGGATTGCTTACG 57.540 30.769 0.00 0.00 0.00 3.18
849 858 9.558396 TTCTTTGTTGAATATTTTGGATTGCTT 57.442 25.926 0.00 0.00 0.00 3.91
850 859 9.558396 TTTCTTTGTTGAATATTTTGGATTGCT 57.442 25.926 0.00 0.00 0.00 3.91
875 884 3.131396 CTGTGTGAGCTACCGACTTTTT 58.869 45.455 0.00 0.00 0.00 1.94
876 885 2.102588 ACTGTGTGAGCTACCGACTTTT 59.897 45.455 0.00 0.00 0.00 2.27
877 886 1.687123 ACTGTGTGAGCTACCGACTTT 59.313 47.619 0.00 0.00 0.00 2.66
878 887 1.329256 ACTGTGTGAGCTACCGACTT 58.671 50.000 0.00 0.00 0.00 3.01
882 891 1.792949 GTTCAACTGTGTGAGCTACCG 59.207 52.381 0.00 0.00 0.00 4.02
899 908 3.458189 CTGGGAGTATGACGAATGGTTC 58.542 50.000 0.00 0.00 0.00 3.62
1048 1082 1.739667 GTGTGGTTTTGTGGCCCTC 59.260 57.895 0.00 0.00 0.00 4.30
1170 1204 2.506472 GGGGCGATGGAGAGGAAC 59.494 66.667 0.00 0.00 0.00 3.62
1183 1217 2.333688 AGAGATTAAGCTTTCGGGGC 57.666 50.000 3.20 0.00 0.00 5.80
1223 1257 1.856802 CAAAGCAGGGAAAACAGCAC 58.143 50.000 0.00 0.00 0.00 4.40
1247 1281 1.571215 GCCACGGAAAACCCACGTAG 61.571 60.000 0.00 0.00 39.02 3.51
1266 1300 3.464907 TCTAGGATCTACGAACAGACCG 58.535 50.000 0.00 0.00 0.00 4.79
1275 1309 4.036498 ACAACACGGAATCTAGGATCTACG 59.964 45.833 0.00 0.00 0.00 3.51
1280 1321 5.598830 ACTCATACAACACGGAATCTAGGAT 59.401 40.000 0.00 0.00 0.00 3.24
1282 1323 5.043903 CACTCATACAACACGGAATCTAGG 58.956 45.833 0.00 0.00 0.00 3.02
1290 1331 2.073816 GGAACCACTCATACAACACGG 58.926 52.381 0.00 0.00 0.00 4.94
1327 1368 0.459759 GGCTAGCGTCAACCCTACAC 60.460 60.000 9.00 0.00 0.00 2.90
1339 1380 2.186076 CTTGAGTTTCGTAGGCTAGCG 58.814 52.381 9.00 2.24 0.00 4.26
1349 1390 4.749245 ATACACCAAAGCTTGAGTTTCG 57.251 40.909 0.00 0.00 0.00 3.46
1425 1466 6.547880 ACATGGTTCAGAGATCTATAACTCGT 59.452 38.462 0.00 0.00 38.08 4.18
1494 1536 4.274602 TGGTAATTAGGAACGTGAAGCA 57.725 40.909 0.00 0.00 0.00 3.91
1560 1623 6.128876 CGAAGATCGATTGATTCCATCTCAAG 60.129 42.308 0.00 0.00 43.74 3.02
1567 1630 4.112634 GACACGAAGATCGATTGATTCCA 58.887 43.478 6.78 0.00 43.74 3.53
1577 1640 2.851805 TGATCCTGACACGAAGATCG 57.148 50.000 0.00 0.00 46.93 3.69
1618 1681 9.130312 GAATACAAGCTATAGTCCATCTAAACG 57.870 37.037 0.84 0.00 31.94 3.60
1695 1758 4.513318 TCATGTAATGTGAAGTTGCGTGAA 59.487 37.500 0.00 0.00 46.80 3.18
1699 1762 6.349973 AGTATCATGTAATGTGAAGTTGCG 57.650 37.500 0.00 0.00 46.80 4.85
1713 1776 7.423844 TGATCAGGTTTCAGTAGTATCATGT 57.576 36.000 0.00 0.00 0.00 3.21
1751 1814 1.869767 GGTTATCAGCTGAGGAATGCG 59.130 52.381 22.96 0.00 0.00 4.73
1777 1841 9.479549 AGGTGAAACATTAGATGGAATTAATGT 57.520 29.630 4.52 4.52 46.79 2.71
1896 1966 5.133221 CCATAGTAGGACCCCAAAATTCAG 58.867 45.833 0.00 0.00 0.00 3.02
2021 2092 7.307989 GCTCTAGAAACAAGTGCAGAATGTTAA 60.308 37.037 10.95 2.20 39.31 2.01
2022 2093 6.147821 GCTCTAGAAACAAGTGCAGAATGTTA 59.852 38.462 10.95 0.00 39.31 2.41
2024 2095 4.453819 GCTCTAGAAACAAGTGCAGAATGT 59.546 41.667 0.00 0.00 39.31 2.71
2025 2096 4.694509 AGCTCTAGAAACAAGTGCAGAATG 59.305 41.667 0.00 0.00 36.24 2.67
2026 2097 4.904241 AGCTCTAGAAACAAGTGCAGAAT 58.096 39.130 0.00 0.00 36.24 2.40
2088 2163 6.656693 AGTGTTCAGATAGGTTTGGATGAAAG 59.343 38.462 0.00 0.00 0.00 2.62
2091 2166 5.762179 AGTGTTCAGATAGGTTTGGATGA 57.238 39.130 0.00 0.00 0.00 2.92
2092 2167 6.644347 ACTAGTGTTCAGATAGGTTTGGATG 58.356 40.000 0.00 0.00 0.00 3.51
2093 2168 6.875972 ACTAGTGTTCAGATAGGTTTGGAT 57.124 37.500 0.00 0.00 0.00 3.41
2094 2169 6.681729 AACTAGTGTTCAGATAGGTTTGGA 57.318 37.500 0.00 0.00 0.00 3.53
2099 2174 6.204882 GCAACAAAACTAGTGTTCAGATAGGT 59.795 38.462 0.00 0.00 37.09 3.08
2105 2180 6.508404 GCATTTGCAACAAAACTAGTGTTCAG 60.508 38.462 0.00 0.00 37.09 3.02
2239 2314 2.273449 CGCTTTCCCTGGGCAGAT 59.727 61.111 8.22 0.00 0.00 2.90
2383 2458 8.956426 TGAATTGGTAGACAAATCAGATAAACC 58.044 33.333 0.00 0.00 42.48 3.27
2420 2495 2.009774 CTACACAGGCACACCATAAGC 58.990 52.381 0.00 0.00 39.06 3.09
2450 2525 6.292811 GCTCAGCTGCTTCTAATCTTTATCAC 60.293 42.308 9.47 0.00 0.00 3.06
2473 2552 2.813754 ACGTCACAACATTAGCATTGCT 59.186 40.909 16.63 16.63 43.41 3.91
2687 2775 0.674895 CCTTGCCCTTCTTGTCTCCG 60.675 60.000 0.00 0.00 0.00 4.63
2757 2845 8.031277 ACCCTTAACACAAGTAGTAATACTTCG 58.969 37.037 12.46 9.47 38.14 3.79
2840 2931 1.739466 CTCGCCTCTTGCTTAAATGCA 59.261 47.619 0.00 0.00 41.65 3.96
2860 2951 6.198403 GCTACAAAACTTCACTTAGCCAAAAC 59.802 38.462 0.00 0.00 0.00 2.43
2915 3006 7.301868 ACATTTTAACACCATGGAGTTGATT 57.698 32.000 30.73 14.71 31.81 2.57
2916 3007 6.916360 ACATTTTAACACCATGGAGTTGAT 57.084 33.333 30.73 20.31 31.81 2.57
2918 3009 7.209475 AGAAACATTTTAACACCATGGAGTTG 58.791 34.615 30.73 19.82 31.81 3.16
2919 3010 7.360113 AGAAACATTTTAACACCATGGAGTT 57.640 32.000 27.34 27.34 33.77 3.01
2920 3011 6.976934 AGAAACATTTTAACACCATGGAGT 57.023 33.333 21.47 15.07 0.00 3.85
2921 3012 8.335532 TCTAGAAACATTTTAACACCATGGAG 57.664 34.615 21.47 14.24 0.00 3.86
2923 3014 7.029563 GCTCTAGAAACATTTTAACACCATGG 58.970 38.462 11.19 11.19 0.00 3.66
2924 3015 7.592938 TGCTCTAGAAACATTTTAACACCATG 58.407 34.615 0.00 0.00 0.00 3.66
2925 3016 7.759489 TGCTCTAGAAACATTTTAACACCAT 57.241 32.000 0.00 0.00 0.00 3.55
2926 3017 7.309133 CCATGCTCTAGAAACATTTTAACACCA 60.309 37.037 5.39 0.00 0.00 4.17
2928 3019 7.593825 ACCATGCTCTAGAAACATTTTAACAC 58.406 34.615 5.39 0.00 0.00 3.32
2929 3020 7.759489 ACCATGCTCTAGAAACATTTTAACA 57.241 32.000 5.39 0.00 0.00 2.41
2934 3025 9.023962 TCAAATTACCATGCTCTAGAAACATTT 57.976 29.630 5.39 0.33 0.00 2.32
2935 3026 8.579850 TCAAATTACCATGCTCTAGAAACATT 57.420 30.769 5.39 0.00 0.00 2.71
2936 3027 7.201767 GCTCAAATTACCATGCTCTAGAAACAT 60.202 37.037 0.00 0.00 0.00 2.71
2937 3028 6.094048 GCTCAAATTACCATGCTCTAGAAACA 59.906 38.462 0.00 0.00 0.00 2.83
2938 3029 6.317391 AGCTCAAATTACCATGCTCTAGAAAC 59.683 38.462 0.00 0.00 0.00 2.78
2941 3032 5.620738 AGCTCAAATTACCATGCTCTAGA 57.379 39.130 0.00 0.00 0.00 2.43
2942 3033 6.493116 CAAAGCTCAAATTACCATGCTCTAG 58.507 40.000 0.00 0.00 0.00 2.43
2943 3034 5.163622 GCAAAGCTCAAATTACCATGCTCTA 60.164 40.000 0.00 0.00 0.00 2.43
2944 3035 4.381292 GCAAAGCTCAAATTACCATGCTCT 60.381 41.667 0.00 0.00 0.00 4.09
2945 3036 3.861689 GCAAAGCTCAAATTACCATGCTC 59.138 43.478 0.00 0.00 0.00 4.26
2946 3037 3.512724 AGCAAAGCTCAAATTACCATGCT 59.487 39.130 0.00 0.00 30.62 3.79
2947 3038 3.615496 CAGCAAAGCTCAAATTACCATGC 59.385 43.478 0.00 0.00 36.40 4.06
3096 3199 9.927081 AAGTTATGATAGAATTTCAAGATGGGT 57.073 29.630 0.00 0.00 0.00 4.51
3131 3242 9.565090 TGATTCATGGGAATGACTAAATAAGAG 57.435 33.333 0.00 0.00 43.69 2.85
3169 3280 7.933577 GGAATCATGTGTGAGGATATGTAGAAA 59.066 37.037 0.00 0.00 37.87 2.52
3184 3295 8.055181 AGTTGTATTAAGATGGGAATCATGTGT 58.945 33.333 0.00 0.00 35.97 3.72
3190 3301 7.255277 GCAGGAAGTTGTATTAAGATGGGAATC 60.255 40.741 0.00 0.00 0.00 2.52
3209 3320 0.991920 TGGGGGTCTAAAGCAGGAAG 59.008 55.000 0.00 0.00 0.00 3.46
3221 3332 0.999712 TCAAAAGAGGGATGGGGGTC 59.000 55.000 0.00 0.00 0.00 4.46
3227 3338 5.979517 GGCGATATTTTTCAAAAGAGGGATG 59.020 40.000 0.00 0.00 0.00 3.51
3230 3341 5.323371 TGGCGATATTTTTCAAAAGAGGG 57.677 39.130 0.00 0.00 0.00 4.30
3238 3349 2.414824 GCACGGTTGGCGATATTTTTCA 60.415 45.455 0.00 0.00 0.00 2.69
3240 3351 1.816224 AGCACGGTTGGCGATATTTTT 59.184 42.857 0.00 0.00 36.08 1.94
3241 3352 1.132262 CAGCACGGTTGGCGATATTTT 59.868 47.619 0.00 0.00 36.08 1.82
3362 3473 8.700051 CCTCATATCGATGAAACCTCCTTATAT 58.300 37.037 8.54 0.00 41.62 0.86
3365 3476 5.839063 ACCTCATATCGATGAAACCTCCTTA 59.161 40.000 8.54 0.00 41.62 2.69
3368 3479 4.608948 ACCTCATATCGATGAAACCTCC 57.391 45.455 8.54 0.00 41.62 4.30
3370 3481 5.131142 AGGAAACCTCATATCGATGAAACCT 59.869 40.000 8.54 2.04 41.62 3.50
3371 3482 5.368989 AGGAAACCTCATATCGATGAAACC 58.631 41.667 8.54 0.00 41.62 3.27
3375 3486 6.307776 AGAGTAGGAAACCTCATATCGATGA 58.692 40.000 8.54 0.00 39.88 2.92
3384 3495 2.244695 TGCGAAGAGTAGGAAACCTCA 58.755 47.619 0.00 0.00 34.61 3.86
3389 3500 5.654603 TCTACAATGCGAAGAGTAGGAAA 57.345 39.130 5.48 0.00 35.75 3.13
3391 3502 5.854010 AATCTACAATGCGAAGAGTAGGA 57.146 39.130 5.48 0.00 35.75 2.94
3392 3503 5.625721 CGTAATCTACAATGCGAAGAGTAGG 59.374 44.000 5.48 0.00 35.75 3.18
3393 3504 5.115773 GCGTAATCTACAATGCGAAGAGTAG 59.884 44.000 0.00 0.00 36.24 2.57
3394 3505 4.974275 GCGTAATCTACAATGCGAAGAGTA 59.026 41.667 0.00 0.00 0.00 2.59
3396 3507 3.182572 GGCGTAATCTACAATGCGAAGAG 59.817 47.826 0.00 0.00 0.00 2.85
3397 3508 3.120792 GGCGTAATCTACAATGCGAAGA 58.879 45.455 0.00 0.00 0.00 2.87
3398 3509 2.863740 TGGCGTAATCTACAATGCGAAG 59.136 45.455 0.00 0.00 0.00 3.79
3400 3511 2.588027 TGGCGTAATCTACAATGCGA 57.412 45.000 0.00 0.00 0.00 5.10
3401 3512 6.237835 CCTTATATGGCGTAATCTACAATGCG 60.238 42.308 0.00 0.00 0.00 4.73
3402 3513 6.816640 TCCTTATATGGCGTAATCTACAATGC 59.183 38.462 0.00 0.00 0.00 3.56
3403 3514 7.492669 CCTCCTTATATGGCGTAATCTACAATG 59.507 40.741 0.00 0.00 0.00 2.82
3404 3515 7.180408 ACCTCCTTATATGGCGTAATCTACAAT 59.820 37.037 0.00 0.00 0.00 2.71
3407 3518 6.527057 ACCTCCTTATATGGCGTAATCTAC 57.473 41.667 0.00 0.00 0.00 2.59
3408 3519 7.310237 GGAAACCTCCTTATATGGCGTAATCTA 60.310 40.741 0.00 0.00 38.88 1.98
3409 3520 6.435292 AAACCTCCTTATATGGCGTAATCT 57.565 37.500 0.00 0.00 0.00 2.40
3410 3521 5.642491 GGAAACCTCCTTATATGGCGTAATC 59.358 44.000 0.00 2.47 38.88 1.75
3412 3523 4.964593 GGAAACCTCCTTATATGGCGTAA 58.035 43.478 0.00 0.00 38.88 3.18
3421 3532 8.737363 CTCTTTGGGAGTAGGAAACCTCCTTAT 61.737 44.444 0.00 0.00 42.02 1.73
3422 3533 7.489659 CTCTTTGGGAGTAGGAAACCTCCTTA 61.490 46.154 0.00 0.00 42.02 2.69
3423 3534 6.756204 CTCTTTGGGAGTAGGAAACCTCCTT 61.756 48.000 0.00 0.00 42.02 3.36
3436 3768 0.472471 TTTCGGTGCTCTTTGGGAGT 59.528 50.000 0.00 0.00 43.62 3.85
3445 3777 0.161024 CGACGTTTCTTTCGGTGCTC 59.839 55.000 0.00 0.00 0.00 4.26
3500 3832 4.139859 TGGTTCAACGTCACCTTTTAGA 57.860 40.909 11.61 0.00 33.76 2.10
3501 3833 4.886247 TTGGTTCAACGTCACCTTTTAG 57.114 40.909 11.61 0.00 33.76 1.85
3502 3834 4.942483 TCTTTGGTTCAACGTCACCTTTTA 59.058 37.500 11.61 0.00 33.76 1.52
3573 3905 0.884704 TCTCGTTTGGGAGCTTGTGC 60.885 55.000 0.00 0.00 40.05 4.57
3574 3906 1.532868 CTTCTCGTTTGGGAGCTTGTG 59.467 52.381 0.00 0.00 33.98 3.33
3575 3907 1.543429 CCTTCTCGTTTGGGAGCTTGT 60.543 52.381 0.00 0.00 33.98 3.16
3576 3908 1.160137 CCTTCTCGTTTGGGAGCTTG 58.840 55.000 0.00 0.00 33.98 4.01
3577 3909 1.056660 TCCTTCTCGTTTGGGAGCTT 58.943 50.000 0.00 0.00 33.98 3.74
3578 3910 0.321996 GTCCTTCTCGTTTGGGAGCT 59.678 55.000 0.00 0.00 33.98 4.09
3579 3911 1.014564 CGTCCTTCTCGTTTGGGAGC 61.015 60.000 0.00 0.00 33.98 4.70
3580 3912 1.014564 GCGTCCTTCTCGTTTGGGAG 61.015 60.000 0.00 0.00 35.32 4.30
3581 3913 1.005394 GCGTCCTTCTCGTTTGGGA 60.005 57.895 0.00 0.00 0.00 4.37
3582 3914 1.291877 CTGCGTCCTTCTCGTTTGGG 61.292 60.000 0.00 0.00 0.00 4.12
3583 3915 1.901650 GCTGCGTCCTTCTCGTTTGG 61.902 60.000 0.00 0.00 0.00 3.28
3584 3916 0.946221 AGCTGCGTCCTTCTCGTTTG 60.946 55.000 0.00 0.00 0.00 2.93
3585 3917 0.249911 AAGCTGCGTCCTTCTCGTTT 60.250 50.000 0.00 0.00 0.00 3.60
3586 3918 0.667792 GAAGCTGCGTCCTTCTCGTT 60.668 55.000 4.11 0.00 36.60 3.85
3587 3919 1.080434 GAAGCTGCGTCCTTCTCGT 60.080 57.895 4.11 0.00 36.60 4.18
3588 3920 1.075425 CTGAAGCTGCGTCCTTCTCG 61.075 60.000 12.89 0.00 39.47 4.04
3589 3921 0.037790 ACTGAAGCTGCGTCCTTCTC 60.038 55.000 12.89 0.00 39.47 2.87
3590 3922 0.320247 CACTGAAGCTGCGTCCTTCT 60.320 55.000 12.89 0.00 39.47 2.85
3591 3923 0.319900 TCACTGAAGCTGCGTCCTTC 60.320 55.000 12.89 2.95 39.26 3.46
3592 3924 0.601311 GTCACTGAAGCTGCGTCCTT 60.601 55.000 12.89 0.00 0.00 3.36
3593 3925 1.005630 GTCACTGAAGCTGCGTCCT 60.006 57.895 12.89 0.00 0.00 3.85
3594 3926 0.671781 ATGTCACTGAAGCTGCGTCC 60.672 55.000 12.89 0.00 0.00 4.79
3595 3927 1.996292 TATGTCACTGAAGCTGCGTC 58.004 50.000 8.69 8.69 0.00 5.19
3596 3928 2.069273 GTTATGTCACTGAAGCTGCGT 58.931 47.619 0.00 0.00 0.00 5.24
3597 3929 2.341257 AGTTATGTCACTGAAGCTGCG 58.659 47.619 0.00 0.00 0.00 5.18
3598 3930 3.669023 GCAAGTTATGTCACTGAAGCTGC 60.669 47.826 0.00 0.00 0.00 5.25
3599 3931 3.499537 TGCAAGTTATGTCACTGAAGCTG 59.500 43.478 0.00 0.00 0.00 4.24
3600 3932 3.743521 TGCAAGTTATGTCACTGAAGCT 58.256 40.909 0.00 0.00 0.00 3.74
3601 3933 3.120060 CCTGCAAGTTATGTCACTGAAGC 60.120 47.826 0.00 0.00 0.00 3.86
3602 3934 4.067896 ACCTGCAAGTTATGTCACTGAAG 58.932 43.478 0.00 0.00 0.00 3.02
3603 3935 3.814842 CACCTGCAAGTTATGTCACTGAA 59.185 43.478 0.00 0.00 0.00 3.02
3604 3936 3.402110 CACCTGCAAGTTATGTCACTGA 58.598 45.455 0.00 0.00 0.00 3.41
3605 3937 2.095567 GCACCTGCAAGTTATGTCACTG 60.096 50.000 0.00 0.00 41.59 3.66
3606 3938 2.154462 GCACCTGCAAGTTATGTCACT 58.846 47.619 0.00 0.00 41.59 3.41
3607 3939 2.619013 GCACCTGCAAGTTATGTCAC 57.381 50.000 0.00 0.00 41.59 3.67
3619 3951 2.203337 TGACCCAACTGCACCTGC 60.203 61.111 0.00 0.00 42.50 4.85
3620 3952 1.149174 AGTGACCCAACTGCACCTG 59.851 57.895 0.00 0.00 33.14 4.00
3621 3953 1.149174 CAGTGACCCAACTGCACCT 59.851 57.895 0.00 0.00 41.05 4.00
3622 3954 1.148273 TCAGTGACCCAACTGCACC 59.852 57.895 0.00 0.00 45.93 5.01
3623 3955 0.463654 TGTCAGTGACCCAACTGCAC 60.464 55.000 20.43 0.00 45.93 4.57
3624 3956 0.473755 ATGTCAGTGACCCAACTGCA 59.526 50.000 20.43 0.00 45.93 4.41
3625 3957 2.472695 TATGTCAGTGACCCAACTGC 57.527 50.000 20.43 0.00 45.93 4.40
3627 3959 2.305927 CCCTTATGTCAGTGACCCAACT 59.694 50.000 20.43 3.18 0.00 3.16
3628 3960 2.711542 CCCTTATGTCAGTGACCCAAC 58.288 52.381 20.43 0.00 0.00 3.77
3629 3961 1.004277 GCCCTTATGTCAGTGACCCAA 59.996 52.381 20.43 12.61 0.00 4.12
3630 3962 0.618458 GCCCTTATGTCAGTGACCCA 59.382 55.000 20.43 5.34 0.00 4.51
3631 3963 0.107165 GGCCCTTATGTCAGTGACCC 60.107 60.000 20.43 8.61 0.00 4.46
3632 3964 0.618458 TGGCCCTTATGTCAGTGACC 59.382 55.000 20.43 3.05 0.00 4.02
3633 3965 1.555075 TCTGGCCCTTATGTCAGTGAC 59.445 52.381 16.68 16.68 0.00 3.67
3634 3966 1.951209 TCTGGCCCTTATGTCAGTGA 58.049 50.000 0.00 0.00 0.00 3.41
3635 3967 2.569059 CATCTGGCCCTTATGTCAGTG 58.431 52.381 0.00 0.00 0.00 3.66
3636 3968 1.133976 GCATCTGGCCCTTATGTCAGT 60.134 52.381 0.00 0.00 36.11 3.41
3637 3969 1.142465 AGCATCTGGCCCTTATGTCAG 59.858 52.381 0.00 0.00 46.50 3.51
3638 3970 1.216064 AGCATCTGGCCCTTATGTCA 58.784 50.000 0.00 0.00 46.50 3.58
3639 3971 1.952296 CAAGCATCTGGCCCTTATGTC 59.048 52.381 0.00 0.00 46.50 3.06
3640 3972 1.285962 ACAAGCATCTGGCCCTTATGT 59.714 47.619 0.00 0.00 46.50 2.29
3641 3973 2.062971 ACAAGCATCTGGCCCTTATG 57.937 50.000 0.00 2.12 46.50 1.90
3642 3974 2.381911 CAACAAGCATCTGGCCCTTAT 58.618 47.619 0.00 0.00 46.50 1.73
3643 3975 1.616725 CCAACAAGCATCTGGCCCTTA 60.617 52.381 0.00 0.00 46.50 2.69
3644 3976 0.901580 CCAACAAGCATCTGGCCCTT 60.902 55.000 0.00 0.00 46.50 3.95
3645 3977 1.304713 CCAACAAGCATCTGGCCCT 60.305 57.895 0.00 0.00 46.50 5.19
3646 3978 2.353610 CCCAACAAGCATCTGGCCC 61.354 63.158 0.00 0.00 46.50 5.80
3647 3979 3.010413 GCCCAACAAGCATCTGGCC 62.010 63.158 0.00 0.00 46.50 5.36
3648 3980 2.575461 GCCCAACAAGCATCTGGC 59.425 61.111 0.00 0.00 45.30 4.85
3649 3981 2.353610 GGGCCCAACAAGCATCTGG 61.354 63.158 19.95 0.00 0.00 3.86
3650 3982 1.607178 TGGGCCCAACAAGCATCTG 60.607 57.895 26.33 0.00 0.00 2.90
3651 3983 1.607467 GTGGGCCCAACAAGCATCT 60.607 57.895 30.64 0.00 0.00 2.90
3652 3984 1.259840 ATGTGGGCCCAACAAGCATC 61.260 55.000 30.64 12.49 0.00 3.91
3653 3985 1.229272 ATGTGGGCCCAACAAGCAT 60.229 52.632 30.64 22.57 0.00 3.79
3654 3986 2.200930 ATGTGGGCCCAACAAGCA 59.799 55.556 30.64 21.14 0.00 3.91
3655 3987 1.757423 AACATGTGGGCCCAACAAGC 61.757 55.000 30.64 15.09 0.00 4.01
3656 3988 1.545582 CTAACATGTGGGCCCAACAAG 59.454 52.381 30.64 24.28 0.00 3.16
3657 3989 1.133325 ACTAACATGTGGGCCCAACAA 60.133 47.619 30.64 16.52 0.00 2.83
3658 3990 0.480690 ACTAACATGTGGGCCCAACA 59.519 50.000 30.64 26.33 0.00 3.33
3659 3991 0.887933 CACTAACATGTGGGCCCAAC 59.112 55.000 30.64 21.29 34.56 3.77
3660 3992 0.774276 TCACTAACATGTGGGCCCAA 59.226 50.000 30.64 17.87 38.40 4.12
3661 3993 0.037590 GTCACTAACATGTGGGCCCA 59.962 55.000 24.45 24.45 38.40 5.36
3662 3994 0.679960 GGTCACTAACATGTGGGCCC 60.680 60.000 17.59 17.59 38.40 5.80
3663 3995 0.679960 GGGTCACTAACATGTGGGCC 60.680 60.000 0.00 0.00 38.40 5.80
3664 3996 0.037590 TGGGTCACTAACATGTGGGC 59.962 55.000 0.00 0.00 38.40 5.36
3665 3997 2.159382 GTTGGGTCACTAACATGTGGG 58.841 52.381 0.00 0.00 37.92 4.61
3666 3998 2.813754 CAGTTGGGTCACTAACATGTGG 59.186 50.000 0.00 0.00 40.20 4.17
3667 3999 2.226437 GCAGTTGGGTCACTAACATGTG 59.774 50.000 0.00 0.00 40.20 3.21
3668 4000 2.158682 TGCAGTTGGGTCACTAACATGT 60.159 45.455 0.00 0.00 40.20 3.21
3669 4001 2.226437 GTGCAGTTGGGTCACTAACATG 59.774 50.000 0.00 0.00 40.20 3.21
3670 4002 2.504367 GTGCAGTTGGGTCACTAACAT 58.496 47.619 0.00 0.00 40.20 2.71
3671 4003 1.476110 GGTGCAGTTGGGTCACTAACA 60.476 52.381 0.00 0.00 40.20 2.41
3672 4004 1.202770 AGGTGCAGTTGGGTCACTAAC 60.203 52.381 0.00 0.00 38.25 2.34
3673 4005 1.136828 AGGTGCAGTTGGGTCACTAA 58.863 50.000 0.00 0.00 0.00 2.24
3674 4006 0.396435 CAGGTGCAGTTGGGTCACTA 59.604 55.000 0.00 0.00 0.00 2.74
3675 4007 1.149174 CAGGTGCAGTTGGGTCACT 59.851 57.895 0.00 0.00 0.00 3.41
3676 4008 2.555547 GCAGGTGCAGTTGGGTCAC 61.556 63.158 0.00 0.00 41.59 3.67
3677 4009 2.203337 GCAGGTGCAGTTGGGTCA 60.203 61.111 0.00 0.00 41.59 4.02
3687 4019 1.079266 CCTCTCTCACTGCAGGTGC 60.079 63.158 19.93 0.00 44.98 5.01
3688 4020 1.595882 CCCTCTCTCACTGCAGGTG 59.404 63.158 19.93 13.73 46.60 4.00
3689 4021 1.611851 CCCCTCTCTCACTGCAGGT 60.612 63.158 19.93 0.24 0.00 4.00
3690 4022 2.365586 CCCCCTCTCTCACTGCAGG 61.366 68.421 19.93 7.28 0.00 4.85
3691 4023 3.028921 GCCCCCTCTCTCACTGCAG 62.029 68.421 13.48 13.48 0.00 4.41
3692 4024 3.005539 GCCCCCTCTCTCACTGCA 61.006 66.667 0.00 0.00 0.00 4.41
3693 4025 3.791586 GGCCCCCTCTCTCACTGC 61.792 72.222 0.00 0.00 0.00 4.40
3694 4026 1.908340 CTTGGCCCCCTCTCTCACTG 61.908 65.000 0.00 0.00 0.00 3.66
3695 4027 1.614824 CTTGGCCCCCTCTCTCACT 60.615 63.158 0.00 0.00 0.00 3.41
3696 4028 2.674220 CCTTGGCCCCCTCTCTCAC 61.674 68.421 0.00 0.00 0.00 3.51
3697 4029 2.285668 CCTTGGCCCCCTCTCTCA 60.286 66.667 0.00 0.00 0.00 3.27
3698 4030 3.803162 GCCTTGGCCCCCTCTCTC 61.803 72.222 0.00 0.00 0.00 3.20
3699 4031 4.682714 TGCCTTGGCCCCCTCTCT 62.683 66.667 9.35 0.00 0.00 3.10
3700 4032 3.661648 TTGCCTTGGCCCCCTCTC 61.662 66.667 9.35 0.00 0.00 3.20
3701 4033 3.984732 GTTGCCTTGGCCCCCTCT 61.985 66.667 9.35 0.00 0.00 3.69
3702 4034 3.826265 TTGTTGCCTTGGCCCCCTC 62.826 63.158 9.35 0.00 0.00 4.30
3703 4035 3.833553 CTTGTTGCCTTGGCCCCCT 62.834 63.158 9.35 0.00 0.00 4.79
3704 4036 3.313524 CTTGTTGCCTTGGCCCCC 61.314 66.667 9.35 0.00 0.00 5.40
3705 4037 4.007644 GCTTGTTGCCTTGGCCCC 62.008 66.667 9.35 0.11 35.15 5.80
3706 4038 3.233231 TGCTTGTTGCCTTGGCCC 61.233 61.111 9.35 0.48 42.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.