Multiple sequence alignment - TraesCS2B01G245700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G245700 chr2B 100.000 2993 0 0 1 2993 249531175 249528183 0.000000e+00 5528.0
1 TraesCS2B01G245700 chr2B 90.283 813 57 12 1498 2298 17576671 17575869 0.000000e+00 1044.0
2 TraesCS2B01G245700 chr2B 87.799 795 61 20 1981 2746 184120625 184119838 0.000000e+00 898.0
3 TraesCS2B01G245700 chr2B 91.925 644 43 7 1293 1929 184121388 184120747 0.000000e+00 893.0
4 TraesCS2B01G245700 chr2B 83.205 649 66 24 2226 2840 403419894 403420533 3.370000e-154 555.0
5 TraesCS2B01G245700 chr2B 85.950 484 31 17 2294 2740 17575758 17575275 1.610000e-132 483.0
6 TraesCS2B01G245700 chr2B 90.226 266 18 4 1985 2244 403419276 403419539 1.030000e-89 340.0
7 TraesCS2B01G245700 chr2B 87.310 197 25 0 2746 2942 17574932 17574736 3.000000e-55 226.0
8 TraesCS2B01G245700 chrUn 92.877 1067 66 5 1 1067 89766467 89767523 0.000000e+00 1541.0
9 TraesCS2B01G245700 chr3B 88.338 1029 71 24 1498 2511 754764859 754765853 0.000000e+00 1190.0
10 TraesCS2B01G245700 chr3B 84.496 258 21 9 4 242 124772970 124772713 1.390000e-58 237.0
11 TraesCS2B01G245700 chr3B 86.294 197 27 0 2746 2942 737681593 737681397 6.500000e-52 215.0
12 TraesCS2B01G245700 chr7A 88.512 914 70 17 1293 2195 629143404 629142515 0.000000e+00 1074.0
13 TraesCS2B01G245700 chr7A 88.293 914 71 20 1293 2195 629244327 629243439 0.000000e+00 1062.0
14 TraesCS2B01G245700 chr7A 91.079 482 34 7 1293 1768 629190851 629190373 0.000000e+00 643.0
15 TraesCS2B01G245700 chr5B 86.533 750 56 20 2032 2740 119419859 119420604 0.000000e+00 784.0
16 TraesCS2B01G245700 chr5B 90.942 552 35 10 1498 2042 119418080 119418623 0.000000e+00 728.0
17 TraesCS2B01G245700 chr5B 94.757 267 13 1 1293 1559 239392254 239391989 5.970000e-112 414.0
18 TraesCS2B01G245700 chr5B 90.657 289 22 3 1931 2218 239391397 239391113 2.180000e-101 379.0
19 TraesCS2B01G245700 chr5B 87.054 224 21 4 2746 2965 239259204 239258985 2.300000e-61 246.0
20 TraesCS2B01G245700 chr6B 87.956 631 46 16 1295 1918 707967709 707968316 0.000000e+00 717.0
21 TraesCS2B01G245700 chr3A 88.298 564 37 14 2156 2694 20433436 20432877 0.000000e+00 649.0
22 TraesCS2B01G245700 chr3A 93.820 356 17 3 1342 1692 20433811 20433456 5.680000e-147 531.0
23 TraesCS2B01G245700 chr1D 85.273 550 36 17 2242 2749 468885864 468885318 2.640000e-145 525.0
24 TraesCS2B01G245700 chr1D 88.955 335 28 5 2242 2568 49518239 49517906 3.590000e-109 405.0
25 TraesCS2B01G245700 chr1D 84.375 416 45 7 871 1269 456275617 456276029 1.010000e-104 390.0
26 TraesCS2B01G245700 chr1B 84.351 524 37 18 2242 2746 46135043 46134546 3.490000e-129 472.0
27 TraesCS2B01G245700 chr1B 84.496 258 21 9 4 242 422555668 422555925 1.390000e-58 237.0
28 TraesCS2B01G245700 chr1B 80.556 252 32 10 1029 1266 567463966 567464214 8.530000e-41 178.0
29 TraesCS2B01G245700 chr6A 85.210 453 51 8 830 1269 109110965 109111414 4.550000e-123 451.0
30 TraesCS2B01G245700 chr5A 86.788 386 37 8 1780 2164 547791459 547791087 4.610000e-113 418.0
31 TraesCS2B01G245700 chr4D 88.955 335 28 5 2242 2568 500523250 500523583 3.590000e-109 405.0
32 TraesCS2B01G245700 chr4D 84.127 189 26 3 1083 1269 20911262 20911448 2.370000e-41 180.0
33 TraesCS2B01G245700 chr4D 89.167 120 11 2 1083 1201 61140723 61140841 6.680000e-32 148.0
34 TraesCS2B01G245700 chr2A 86.351 359 34 8 830 1187 64354462 64354118 7.830000e-101 377.0
35 TraesCS2B01G245700 chr2A 85.096 208 27 4 2739 2945 413438825 413439029 3.020000e-50 209.0
36 TraesCS2B01G245700 chr4B 81.212 495 56 19 358 822 13430274 13429787 6.100000e-97 364.0
37 TraesCS2B01G245700 chr6D 86.307 241 24 6 830 1070 395074303 395074534 1.380000e-63 254.0
38 TraesCS2B01G245700 chr6D 87.417 151 16 1 675 822 395074026 395074176 1.430000e-38 171.0
39 TraesCS2B01G245700 chr3D 84.109 258 22 9 4 242 460525119 460525376 6.450000e-57 231.0
40 TraesCS2B01G245700 chr3D 82.741 197 20 8 2746 2942 598880455 598880637 2.390000e-36 163.0
41 TraesCS2B01G245700 chr3D 87.037 54 5 2 1152 1204 400786218 400786166 3.220000e-05 60.2
42 TraesCS2B01G245700 chr1A 89.167 120 11 2 1083 1201 580638561 580638443 6.680000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G245700 chr2B 249528183 249531175 2992 True 5528.000000 5528 100.000000 1 2993 1 chr2B.!!$R1 2992
1 TraesCS2B01G245700 chr2B 184119838 184121388 1550 True 895.500000 898 89.862000 1293 2746 2 chr2B.!!$R3 1453
2 TraesCS2B01G245700 chr2B 17574736 17576671 1935 True 584.333333 1044 87.847667 1498 2942 3 chr2B.!!$R2 1444
3 TraesCS2B01G245700 chr2B 403419276 403420533 1257 False 447.500000 555 86.715500 1985 2840 2 chr2B.!!$F1 855
4 TraesCS2B01G245700 chrUn 89766467 89767523 1056 False 1541.000000 1541 92.877000 1 1067 1 chrUn.!!$F1 1066
5 TraesCS2B01G245700 chr3B 754764859 754765853 994 False 1190.000000 1190 88.338000 1498 2511 1 chr3B.!!$F1 1013
6 TraesCS2B01G245700 chr7A 629142515 629143404 889 True 1074.000000 1074 88.512000 1293 2195 1 chr7A.!!$R1 902
7 TraesCS2B01G245700 chr7A 629243439 629244327 888 True 1062.000000 1062 88.293000 1293 2195 1 chr7A.!!$R3 902
8 TraesCS2B01G245700 chr5B 119418080 119420604 2524 False 756.000000 784 88.737500 1498 2740 2 chr5B.!!$F1 1242
9 TraesCS2B01G245700 chr5B 239391113 239392254 1141 True 396.500000 414 92.707000 1293 2218 2 chr5B.!!$R2 925
10 TraesCS2B01G245700 chr6B 707967709 707968316 607 False 717.000000 717 87.956000 1295 1918 1 chr6B.!!$F1 623
11 TraesCS2B01G245700 chr3A 20432877 20433811 934 True 590.000000 649 91.059000 1342 2694 2 chr3A.!!$R1 1352
12 TraesCS2B01G245700 chr1D 468885318 468885864 546 True 525.000000 525 85.273000 2242 2749 1 chr1D.!!$R2 507
13 TraesCS2B01G245700 chr6D 395074026 395074534 508 False 212.500000 254 86.862000 675 1070 2 chr6D.!!$F1 395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1107 0.038166 GGTTGCTGGTGAAGGATGGA 59.962 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2970 5518 0.033405 CTCCCCGAGTAACTCCAGGA 60.033 60.0 0.0 0.0 30.66 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.841246 ACCCATCATAGGAATCAGTAGGAC 59.159 45.833 0.00 0.00 0.00 3.85
68 69 1.369625 GATGTAAGGACCGCAACAGG 58.630 55.000 3.53 0.00 37.30 4.00
118 119 6.560253 AATTATAGCTTGAATTACGCCCTG 57.440 37.500 0.00 0.00 0.00 4.45
125 126 1.001393 AATTACGCCCTGGGTGTGG 60.001 57.895 36.05 16.16 46.65 4.17
136 137 2.517402 GGTGTGGCCGTGACCAAA 60.517 61.111 11.78 0.00 42.70 3.28
153 154 6.061022 GACCAAAAATAAATGGGGGTCAAT 57.939 37.500 0.00 0.00 42.17 2.57
172 173 7.824779 GGGTCAATAATTGTAGAGGATGGATAC 59.175 40.741 0.00 0.00 0.00 2.24
260 261 6.884280 AAAATTTCTCTCGACCATCTTTGT 57.116 33.333 0.00 0.00 0.00 2.83
339 340 0.509929 GGCGAACGTGACCTAAACAC 59.490 55.000 0.00 0.00 35.26 3.32
368 369 2.739913 CCACATCCGAACAACGTTATGT 59.260 45.455 0.00 3.14 42.83 2.29
384 385 7.435068 ACGTTATGTTTCTTATCTTTGCACT 57.565 32.000 0.00 0.00 0.00 4.40
385 386 7.519002 ACGTTATGTTTCTTATCTTTGCACTC 58.481 34.615 0.00 0.00 0.00 3.51
400 401 0.796312 CACTCGCCGTTTGCTATTGT 59.204 50.000 0.00 0.00 38.05 2.71
442 443 4.809673 CTTTTGGTTGGGCTGACTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
443 444 2.507407 TGGTTGGGCTGACTTTATCC 57.493 50.000 0.00 0.00 0.00 2.59
445 446 1.065709 GGTTGGGCTGACTTTATCCGA 60.066 52.381 0.00 0.00 0.00 4.55
614 615 8.242053 ACATTCTTCTATCTCAAATGCAGTTTG 58.758 33.333 0.00 6.00 46.86 2.93
623 624 5.295787 TCTCAAATGCAGTTTGTTTCGTACT 59.704 36.000 16.17 0.00 45.87 2.73
723 724 4.155826 TCAGTTAATGGATTTGACCTTGCG 59.844 41.667 0.00 0.00 0.00 4.85
731 732 3.125316 GGATTTGACCTTGCGACAAGTAG 59.875 47.826 15.28 6.58 0.00 2.57
755 756 1.634973 TGCCAGATTCTCATGTTCCCA 59.365 47.619 0.00 0.00 0.00 4.37
757 758 2.283298 CCAGATTCTCATGTTCCCACG 58.717 52.381 0.00 0.00 0.00 4.94
768 769 1.072489 TGTTCCCACGCAATACTCCAA 59.928 47.619 0.00 0.00 0.00 3.53
780 784 6.016610 ACGCAATACTCCAACAACTTAATGTT 60.017 34.615 0.00 0.00 44.08 2.71
823 827 2.921221 TCCTTCTCCATCTCAGGGTTT 58.079 47.619 0.00 0.00 0.00 3.27
835 958 1.929494 TCAGGGTTTATTCAGGGGCAT 59.071 47.619 0.00 0.00 0.00 4.40
848 971 0.912486 GGGGCATGTACAAGACTCCT 59.088 55.000 3.59 0.00 0.00 3.69
849 972 2.116238 GGGGCATGTACAAGACTCCTA 58.884 52.381 3.59 0.00 0.00 2.94
858 981 6.791867 TGTACAAGACTCCTATATGCTGTT 57.208 37.500 0.00 0.00 0.00 3.16
866 989 4.770010 ACTCCTATATGCTGTTAGCTCCTC 59.230 45.833 0.00 0.00 42.97 3.71
879 1002 5.486063 TGTTAGCTCCTCCCAAACATAGTAA 59.514 40.000 0.00 0.00 0.00 2.24
880 1003 4.762289 AGCTCCTCCCAAACATAGTAAG 57.238 45.455 0.00 0.00 0.00 2.34
881 1004 3.456277 AGCTCCTCCCAAACATAGTAAGG 59.544 47.826 0.00 0.00 0.00 2.69
975 1098 1.619654 TTGAATGAGGGTTGCTGGTG 58.380 50.000 0.00 0.00 0.00 4.17
984 1107 0.038166 GGTTGCTGGTGAAGGATGGA 59.962 55.000 0.00 0.00 0.00 3.41
1017 1140 4.696479 ATAGATGAGGAAGCCGATTTGT 57.304 40.909 0.00 0.00 0.00 2.83
1049 1172 1.338105 CGCAGAAGGAACATCAGGTGA 60.338 52.381 0.00 0.00 0.00 4.02
1070 1193 6.314784 GTGAACTATATGCTTGAAACACCAC 58.685 40.000 0.00 0.00 0.00 4.16
1071 1194 5.414454 TGAACTATATGCTTGAAACACCACC 59.586 40.000 0.00 0.00 0.00 4.61
1072 1195 3.938963 ACTATATGCTTGAAACACCACCG 59.061 43.478 0.00 0.00 0.00 4.94
1073 1196 2.264005 TATGCTTGAAACACCACCGT 57.736 45.000 0.00 0.00 0.00 4.83
1074 1197 2.264005 ATGCTTGAAACACCACCGTA 57.736 45.000 0.00 0.00 0.00 4.02
1075 1198 1.588674 TGCTTGAAACACCACCGTAG 58.411 50.000 0.00 0.00 0.00 3.51
1076 1199 1.139256 TGCTTGAAACACCACCGTAGA 59.861 47.619 0.00 0.00 0.00 2.59
1077 1200 2.224426 TGCTTGAAACACCACCGTAGAT 60.224 45.455 0.00 0.00 0.00 1.98
1078 1201 3.007074 TGCTTGAAACACCACCGTAGATA 59.993 43.478 0.00 0.00 0.00 1.98
1079 1202 3.617263 GCTTGAAACACCACCGTAGATAG 59.383 47.826 0.00 0.00 0.00 2.08
1080 1203 3.880047 TGAAACACCACCGTAGATAGG 57.120 47.619 0.00 0.00 0.00 2.57
1081 1204 3.433343 TGAAACACCACCGTAGATAGGA 58.567 45.455 0.00 0.00 0.00 2.94
1082 1205 3.194116 TGAAACACCACCGTAGATAGGAC 59.806 47.826 0.00 0.00 0.00 3.85
1083 1206 2.519771 ACACCACCGTAGATAGGACA 57.480 50.000 0.00 0.00 0.00 4.02
1084 1207 3.028094 ACACCACCGTAGATAGGACAT 57.972 47.619 0.00 0.00 0.00 3.06
1085 1208 3.371965 ACACCACCGTAGATAGGACATT 58.628 45.455 0.00 0.00 0.00 2.71
1086 1209 3.132289 ACACCACCGTAGATAGGACATTG 59.868 47.826 0.00 0.00 0.00 2.82
1087 1210 3.132289 CACCACCGTAGATAGGACATTGT 59.868 47.826 0.00 0.00 0.00 2.71
1088 1211 3.383825 ACCACCGTAGATAGGACATTGTC 59.616 47.826 8.34 8.34 0.00 3.18
1089 1212 3.637229 CCACCGTAGATAGGACATTGTCT 59.363 47.826 16.02 5.56 32.47 3.41
1090 1213 4.825634 CCACCGTAGATAGGACATTGTCTA 59.174 45.833 16.02 7.42 32.47 2.59
1091 1214 5.301045 CCACCGTAGATAGGACATTGTCTAA 59.699 44.000 16.02 5.56 32.47 2.10
1092 1215 6.183360 CCACCGTAGATAGGACATTGTCTAAA 60.183 42.308 16.02 3.22 32.47 1.85
1093 1216 6.696148 CACCGTAGATAGGACATTGTCTAAAC 59.304 42.308 16.02 6.62 32.47 2.01
1094 1217 6.183360 ACCGTAGATAGGACATTGTCTAAACC 60.183 42.308 16.02 0.19 32.47 3.27
1095 1218 6.214399 CGTAGATAGGACATTGTCTAAACCC 58.786 44.000 16.02 0.00 32.47 4.11
1096 1219 5.277857 AGATAGGACATTGTCTAAACCCG 57.722 43.478 16.02 0.00 32.47 5.28
1097 1220 4.960469 AGATAGGACATTGTCTAAACCCGA 59.040 41.667 16.02 0.00 32.47 5.14
1098 1221 3.611766 AGGACATTGTCTAAACCCGAG 57.388 47.619 16.02 0.00 32.47 4.63
1099 1222 2.904434 AGGACATTGTCTAAACCCGAGT 59.096 45.455 16.02 0.00 32.47 4.18
1100 1223 3.000727 GGACATTGTCTAAACCCGAGTG 58.999 50.000 16.02 0.00 32.47 3.51
1101 1224 2.415512 GACATTGTCTAAACCCGAGTGC 59.584 50.000 9.59 0.00 0.00 4.40
1102 1225 2.038557 ACATTGTCTAAACCCGAGTGCT 59.961 45.455 0.00 0.00 0.00 4.40
1103 1226 2.450609 TTGTCTAAACCCGAGTGCTC 57.549 50.000 0.00 0.00 0.00 4.26
1104 1227 0.606604 TGTCTAAACCCGAGTGCTCC 59.393 55.000 0.00 0.00 0.00 4.70
1105 1228 0.896226 GTCTAAACCCGAGTGCTCCT 59.104 55.000 0.00 0.00 0.00 3.69
1106 1229 0.895530 TCTAAACCCGAGTGCTCCTG 59.104 55.000 0.00 0.00 0.00 3.86
1107 1230 0.608640 CTAAACCCGAGTGCTCCTGT 59.391 55.000 0.00 0.00 0.00 4.00
1108 1231 1.822990 CTAAACCCGAGTGCTCCTGTA 59.177 52.381 0.00 0.00 0.00 2.74
1109 1232 1.276622 AAACCCGAGTGCTCCTGTAT 58.723 50.000 0.00 0.00 0.00 2.29
1110 1233 2.154567 AACCCGAGTGCTCCTGTATA 57.845 50.000 0.00 0.00 0.00 1.47
1111 1234 2.383442 ACCCGAGTGCTCCTGTATAT 57.617 50.000 0.00 0.00 0.00 0.86
1112 1235 3.520691 ACCCGAGTGCTCCTGTATATA 57.479 47.619 0.00 0.00 0.00 0.86
1113 1236 3.840991 ACCCGAGTGCTCCTGTATATAA 58.159 45.455 0.00 0.00 0.00 0.98
1114 1237 4.417437 ACCCGAGTGCTCCTGTATATAAT 58.583 43.478 0.00 0.00 0.00 1.28
1115 1238 4.220821 ACCCGAGTGCTCCTGTATATAATG 59.779 45.833 0.00 0.00 0.00 1.90
1116 1239 4.220821 CCCGAGTGCTCCTGTATATAATGT 59.779 45.833 0.00 0.00 0.00 2.71
1117 1240 5.417894 CCCGAGTGCTCCTGTATATAATGTA 59.582 44.000 0.00 0.00 0.00 2.29
1118 1241 6.323266 CCGAGTGCTCCTGTATATAATGTAC 58.677 44.000 0.00 0.00 0.00 2.90
1119 1242 6.072119 CCGAGTGCTCCTGTATATAATGTACA 60.072 42.308 0.00 0.00 0.00 2.90
1120 1243 6.802348 CGAGTGCTCCTGTATATAATGTACAC 59.198 42.308 0.00 0.00 0.00 2.90
1121 1244 6.994221 AGTGCTCCTGTATATAATGTACACC 58.006 40.000 0.00 0.00 0.00 4.16
1122 1245 6.014499 AGTGCTCCTGTATATAATGTACACCC 60.014 42.308 0.00 0.00 0.00 4.61
1123 1246 6.014499 GTGCTCCTGTATATAATGTACACCCT 60.014 42.308 0.00 0.00 0.00 4.34
1124 1247 6.557253 TGCTCCTGTATATAATGTACACCCTT 59.443 38.462 0.00 0.00 0.00 3.95
1125 1248 7.071950 TGCTCCTGTATATAATGTACACCCTTT 59.928 37.037 0.00 0.00 0.00 3.11
1126 1249 7.387948 GCTCCTGTATATAATGTACACCCTTTG 59.612 40.741 0.00 0.00 0.00 2.77
1127 1250 8.326765 TCCTGTATATAATGTACACCCTTTGT 57.673 34.615 0.00 0.00 42.84 2.83
1128 1251 8.774183 TCCTGTATATAATGTACACCCTTTGTT 58.226 33.333 0.00 0.00 39.91 2.83
1129 1252 9.052759 CCTGTATATAATGTACACCCTTTGTTC 57.947 37.037 0.00 0.00 39.91 3.18
1130 1253 8.967664 TGTATATAATGTACACCCTTTGTTCC 57.032 34.615 0.00 0.00 39.91 3.62
1131 1254 8.774183 TGTATATAATGTACACCCTTTGTTCCT 58.226 33.333 0.00 0.00 39.91 3.36
1140 1263 9.675464 TGTACACCCTTTGTTCCTAAATATAAG 57.325 33.333 0.00 0.00 39.91 1.73
1141 1264 9.676861 GTACACCCTTTGTTCCTAAATATAAGT 57.323 33.333 0.00 0.00 39.91 2.24
1142 1265 8.803397 ACACCCTTTGTTCCTAAATATAAGTC 57.197 34.615 0.00 0.00 33.09 3.01
1143 1266 8.387813 ACACCCTTTGTTCCTAAATATAAGTCA 58.612 33.333 0.00 0.00 33.09 3.41
1144 1267 8.674607 CACCCTTTGTTCCTAAATATAAGTCAC 58.325 37.037 0.00 0.00 0.00 3.67
1145 1268 8.612145 ACCCTTTGTTCCTAAATATAAGTCACT 58.388 33.333 0.00 0.00 0.00 3.41
1146 1269 9.462606 CCCTTTGTTCCTAAATATAAGTCACTT 57.537 33.333 0.00 0.00 0.00 3.16
1150 1273 9.715121 TTGTTCCTAAATATAAGTCACTTTCGT 57.285 29.630 0.00 0.00 0.00 3.85
1164 1287 8.658499 AGTCACTTTCGTAGTTTAATTGAACT 57.342 30.769 18.39 18.39 42.27 3.01
1165 1288 9.106070 AGTCACTTTCGTAGTTTAATTGAACTT 57.894 29.630 19.38 5.79 40.24 2.66
1206 1329 8.786826 TTTAGAAACATAGGTGGTATGAACTG 57.213 34.615 0.00 0.00 41.17 3.16
1207 1330 5.745227 AGAAACATAGGTGGTATGAACTGG 58.255 41.667 0.00 0.00 41.17 4.00
1208 1331 5.250774 AGAAACATAGGTGGTATGAACTGGT 59.749 40.000 0.00 0.00 41.17 4.00
1209 1332 4.487714 ACATAGGTGGTATGAACTGGTG 57.512 45.455 0.00 0.00 41.17 4.17
1210 1333 3.206150 CATAGGTGGTATGAACTGGTGC 58.794 50.000 0.00 0.00 41.17 5.01
1211 1334 0.328258 AGGTGGTATGAACTGGTGCC 59.672 55.000 0.00 0.00 0.00 5.01
1212 1335 0.328258 GGTGGTATGAACTGGTGCCT 59.672 55.000 0.00 0.00 0.00 4.75
1213 1336 1.271926 GGTGGTATGAACTGGTGCCTT 60.272 52.381 0.00 0.00 0.00 4.35
1214 1337 1.812571 GTGGTATGAACTGGTGCCTTG 59.187 52.381 0.00 0.00 0.00 3.61
1215 1338 1.702401 TGGTATGAACTGGTGCCTTGA 59.298 47.619 0.00 0.00 0.00 3.02
1216 1339 2.290260 TGGTATGAACTGGTGCCTTGAG 60.290 50.000 0.00 0.00 0.00 3.02
1217 1340 2.290323 GGTATGAACTGGTGCCTTGAGT 60.290 50.000 0.00 0.00 0.00 3.41
1218 1341 2.664402 ATGAACTGGTGCCTTGAGTT 57.336 45.000 0.00 0.00 32.57 3.01
1219 1342 3.788227 ATGAACTGGTGCCTTGAGTTA 57.212 42.857 0.00 0.00 30.01 2.24
1220 1343 2.846193 TGAACTGGTGCCTTGAGTTAC 58.154 47.619 0.00 0.00 30.01 2.50
1221 1344 2.152016 GAACTGGTGCCTTGAGTTACC 58.848 52.381 0.00 0.00 30.01 2.85
1222 1345 1.136828 ACTGGTGCCTTGAGTTACCA 58.863 50.000 0.00 0.00 40.67 3.25
1223 1346 1.705186 ACTGGTGCCTTGAGTTACCAT 59.295 47.619 0.00 0.00 41.92 3.55
1224 1347 2.910319 ACTGGTGCCTTGAGTTACCATA 59.090 45.455 0.00 0.00 41.92 2.74
1225 1348 3.329520 ACTGGTGCCTTGAGTTACCATAA 59.670 43.478 0.00 0.00 41.92 1.90
1226 1349 4.202524 ACTGGTGCCTTGAGTTACCATAAA 60.203 41.667 0.00 0.00 41.92 1.40
1227 1350 4.076394 TGGTGCCTTGAGTTACCATAAAC 58.924 43.478 0.00 0.00 38.23 2.01
1228 1351 4.202524 TGGTGCCTTGAGTTACCATAAACT 60.203 41.667 0.00 0.00 42.36 2.66
1229 1352 5.013287 TGGTGCCTTGAGTTACCATAAACTA 59.987 40.000 0.00 0.00 39.78 2.24
1230 1353 5.585047 GGTGCCTTGAGTTACCATAAACTAG 59.415 44.000 0.00 0.00 39.78 2.57
1231 1354 5.585047 GTGCCTTGAGTTACCATAAACTAGG 59.415 44.000 0.00 0.00 39.78 3.02
1232 1355 5.249852 TGCCTTGAGTTACCATAAACTAGGT 59.750 40.000 0.00 0.00 39.78 3.08
1233 1356 5.585047 GCCTTGAGTTACCATAAACTAGGTG 59.415 44.000 0.00 0.00 39.78 4.00
1234 1357 6.575649 GCCTTGAGTTACCATAAACTAGGTGA 60.576 42.308 0.00 0.00 39.78 4.02
1235 1358 6.817140 CCTTGAGTTACCATAAACTAGGTGAC 59.183 42.308 0.00 0.00 42.76 3.67
1236 1359 6.290294 TGAGTTACCATAAACTAGGTGACC 57.710 41.667 0.00 0.00 43.27 4.02
1237 1360 5.781306 TGAGTTACCATAAACTAGGTGACCA 59.219 40.000 3.63 0.00 43.27 4.02
1238 1361 6.270463 TGAGTTACCATAAACTAGGTGACCAA 59.730 38.462 3.63 0.00 43.27 3.67
1239 1362 6.708285 AGTTACCATAAACTAGGTGACCAAG 58.292 40.000 3.63 0.00 43.27 3.61
1240 1363 4.569719 ACCATAAACTAGGTGACCAAGG 57.430 45.455 3.63 0.00 36.60 3.61
1241 1364 3.279434 CCATAAACTAGGTGACCAAGGC 58.721 50.000 3.63 0.00 0.00 4.35
1242 1365 3.054361 CCATAAACTAGGTGACCAAGGCT 60.054 47.826 3.63 0.00 0.00 4.58
1243 1366 4.163458 CCATAAACTAGGTGACCAAGGCTA 59.837 45.833 3.63 0.00 0.00 3.93
1244 1367 5.163195 CCATAAACTAGGTGACCAAGGCTAT 60.163 44.000 3.63 0.00 0.00 2.97
1245 1368 6.042781 CCATAAACTAGGTGACCAAGGCTATA 59.957 42.308 3.63 0.00 0.00 1.31
1246 1369 7.256691 CCATAAACTAGGTGACCAAGGCTATAT 60.257 40.741 3.63 0.00 0.00 0.86
1247 1370 8.812972 CATAAACTAGGTGACCAAGGCTATATA 58.187 37.037 3.63 0.00 0.00 0.86
1248 1371 7.873699 AAACTAGGTGACCAAGGCTATATAT 57.126 36.000 3.63 0.00 0.00 0.86
1249 1372 6.859112 ACTAGGTGACCAAGGCTATATATG 57.141 41.667 3.63 0.00 0.00 1.78
1250 1373 6.323737 ACTAGGTGACCAAGGCTATATATGT 58.676 40.000 3.63 0.00 0.00 2.29
1251 1374 5.489792 AGGTGACCAAGGCTATATATGTG 57.510 43.478 3.63 0.00 0.00 3.21
1252 1375 5.155161 AGGTGACCAAGGCTATATATGTGA 58.845 41.667 3.63 0.00 0.00 3.58
1253 1376 5.787494 AGGTGACCAAGGCTATATATGTGAT 59.213 40.000 3.63 0.00 0.00 3.06
1254 1377 5.877012 GGTGACCAAGGCTATATATGTGATG 59.123 44.000 0.00 0.00 0.00 3.07
1255 1378 5.352569 GTGACCAAGGCTATATATGTGATGC 59.647 44.000 0.00 0.00 0.00 3.91
1256 1379 5.012975 TGACCAAGGCTATATATGTGATGCA 59.987 40.000 0.00 0.00 0.00 3.96
1257 1380 6.070951 ACCAAGGCTATATATGTGATGCAT 57.929 37.500 0.00 0.00 41.42 3.96
1258 1381 6.118170 ACCAAGGCTATATATGTGATGCATC 58.882 40.000 20.14 20.14 38.94 3.91
1259 1382 6.069789 ACCAAGGCTATATATGTGATGCATCT 60.070 38.462 26.32 10.05 38.94 2.90
1260 1383 6.482641 CCAAGGCTATATATGTGATGCATCTC 59.517 42.308 26.32 22.77 38.94 2.75
1261 1384 7.273712 CAAGGCTATATATGTGATGCATCTCT 58.726 38.462 26.32 14.79 38.94 3.10
1262 1385 6.818233 AGGCTATATATGTGATGCATCTCTG 58.182 40.000 26.32 9.99 38.94 3.35
1273 1396 2.547299 GCATCTCTGCCTATGCTTCT 57.453 50.000 0.00 0.00 44.08 2.85
1274 1397 2.848691 GCATCTCTGCCTATGCTTCTT 58.151 47.619 0.00 0.00 44.08 2.52
1275 1398 3.212685 GCATCTCTGCCTATGCTTCTTT 58.787 45.455 0.00 0.00 44.08 2.52
1276 1399 3.003482 GCATCTCTGCCTATGCTTCTTTG 59.997 47.826 0.00 0.00 44.08 2.77
1277 1400 2.636830 TCTCTGCCTATGCTTCTTTGC 58.363 47.619 0.00 0.00 38.71 3.68
1278 1401 1.329906 CTCTGCCTATGCTTCTTTGCG 59.670 52.381 0.00 0.00 38.71 4.85
1279 1402 0.379669 CTGCCTATGCTTCTTTGCGG 59.620 55.000 0.00 0.00 38.71 5.69
1280 1403 0.035534 TGCCTATGCTTCTTTGCGGA 60.036 50.000 0.00 0.00 38.71 5.54
1281 1404 1.094785 GCCTATGCTTCTTTGCGGAA 58.905 50.000 0.00 0.00 35.36 4.30
1282 1405 1.202188 GCCTATGCTTCTTTGCGGAAC 60.202 52.381 0.00 0.00 35.36 3.62
1283 1406 2.359900 CCTATGCTTCTTTGCGGAACT 58.640 47.619 0.00 0.00 35.36 3.01
1284 1407 2.096496 CCTATGCTTCTTTGCGGAACTG 59.904 50.000 0.00 0.00 35.36 3.16
1285 1408 0.883833 ATGCTTCTTTGCGGAACTGG 59.116 50.000 0.00 0.00 35.36 4.00
1286 1409 0.465460 TGCTTCTTTGCGGAACTGGT 60.465 50.000 0.00 0.00 35.36 4.00
1287 1410 0.238553 GCTTCTTTGCGGAACTGGTC 59.761 55.000 0.00 0.00 0.00 4.02
1288 1411 1.884235 CTTCTTTGCGGAACTGGTCT 58.116 50.000 0.00 0.00 0.00 3.85
1289 1412 2.222027 CTTCTTTGCGGAACTGGTCTT 58.778 47.619 0.00 0.00 0.00 3.01
1290 1413 3.399330 CTTCTTTGCGGAACTGGTCTTA 58.601 45.455 0.00 0.00 0.00 2.10
1291 1414 3.695830 TCTTTGCGGAACTGGTCTTAT 57.304 42.857 0.00 0.00 0.00 1.73
1386 1509 4.039703 CAGTGCAAATGCTACATGTATGC 58.960 43.478 17.58 17.58 42.66 3.14
1398 1521 5.107607 GCTACATGTATGCGCTTATTACGTT 60.108 40.000 9.73 2.03 0.00 3.99
1447 1570 8.926710 CCCGTATAGAGATGCTACTTTATTTTG 58.073 37.037 0.00 0.00 0.00 2.44
1537 1660 5.045213 TGTCATATGGTGGTAGGAAATGTGT 60.045 40.000 2.13 0.00 0.00 3.72
1729 2050 4.115279 CGGCTGTAGCTGGTGATG 57.885 61.111 4.77 0.00 43.47 3.07
1779 2116 6.127786 ACCAGAAGTACAGATCGGTAAAGTAC 60.128 42.308 7.32 5.63 36.26 2.73
1786 2123 6.585695 ACAGATCGGTAAAGTACAGAGAAA 57.414 37.500 0.00 0.00 36.38 2.52
1843 2180 4.201657 TCCACGACGGACTGATAATCTAA 58.798 43.478 0.00 0.00 39.64 2.10
1913 2250 7.752686 GCTGAAGCTTCTATTTTCTACCAAAAG 59.247 37.037 26.09 10.78 38.21 2.27
1986 2359 3.418684 TTAAACTCACAAGAGGGAGCC 57.581 47.619 0.00 0.00 46.44 4.70
2000 2409 7.039714 ACAAGAGGGAGCCTTTTAATAACAAAG 60.040 37.037 0.00 0.00 31.76 2.77
2105 3760 6.964807 ATATTGAATTGGCTATGTCTGCAA 57.035 33.333 0.00 0.00 0.00 4.08
2106 3761 5.664294 ATTGAATTGGCTATGTCTGCAAA 57.336 34.783 0.00 0.00 0.00 3.68
2107 3762 5.465532 TTGAATTGGCTATGTCTGCAAAA 57.534 34.783 0.00 0.00 0.00 2.44
2180 3839 8.567948 CAAAACTAAGTTGGATGAGCTTAAAGA 58.432 33.333 0.00 0.00 0.00 2.52
2198 3857 8.443937 GCTTAAAGAACTTATTCACCAGTACAG 58.556 37.037 0.00 0.00 37.29 2.74
2213 3872 8.322828 TCACCAGTACAGGTTAAATATGCTTTA 58.677 33.333 7.31 0.00 40.77 1.85
2278 4317 8.034313 TGTCTAAAGGAATACTGGATATGCTT 57.966 34.615 0.00 0.00 0.00 3.91
2493 4661 5.530915 TGTTGGTTTCTGAACTTGGTAGATG 59.469 40.000 0.00 0.00 36.03 2.90
2741 5245 2.487274 TAACCATGTTGGCCCGGACC 62.487 60.000 0.73 0.00 42.67 4.46
2756 5304 4.306600 CCCGGACCAAAAATGAGAAAAAG 58.693 43.478 0.73 0.00 0.00 2.27
2808 5356 2.925170 AGTGGCGGCTTCTCACCT 60.925 61.111 11.43 0.00 32.29 4.00
2826 5374 1.568612 CTTGCTGTTCGTGGCGATGT 61.569 55.000 0.00 0.00 35.23 3.06
2828 5376 2.027073 GCTGTTCGTGGCGATGTCA 61.027 57.895 0.00 0.00 35.23 3.58
2876 5424 4.349503 AGGACGGCAGCAATGGCA 62.350 61.111 0.00 0.00 44.61 4.92
2879 5427 3.044059 GACGGCAGCAATGGCAGTC 62.044 63.158 0.00 2.24 46.09 3.51
2886 5434 0.952497 AGCAATGGCAGTCAGTGTCG 60.952 55.000 4.09 0.00 42.79 4.35
2898 5446 4.023107 CAGTCAGTGTCGAGGAAGAAGTAA 60.023 45.833 0.00 0.00 0.00 2.24
2908 5456 3.358118 AGGAAGAAGTAAGAGAGACCCG 58.642 50.000 0.00 0.00 0.00 5.28
2910 5458 2.217510 AGAAGTAAGAGAGACCCGCA 57.782 50.000 0.00 0.00 0.00 5.69
2916 5464 2.202676 GAGAGACCCGCAGCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
2919 5467 2.048127 AGACCCGCAGCTTCGAAC 60.048 61.111 7.52 0.00 0.00 3.95
2921 5469 3.591254 GACCCGCAGCTTCGAACCT 62.591 63.158 7.52 0.00 0.00 3.50
2926 5474 1.581447 GCAGCTTCGAACCTTTGGG 59.419 57.895 0.00 0.00 38.88 4.12
2930 5478 1.866853 GCTTCGAACCTTTGGGCCAG 61.867 60.000 6.23 0.00 35.63 4.85
2933 5481 1.073199 CGAACCTTTGGGCCAGAGT 59.927 57.895 21.39 10.90 35.63 3.24
2938 5486 0.108138 CCTTTGGGCCAGAGTAGACG 60.108 60.000 21.39 3.33 0.00 4.18
2942 5490 3.138798 GGCCAGAGTAGACGCGGA 61.139 66.667 12.47 0.00 0.00 5.54
2943 5491 2.409651 GCCAGAGTAGACGCGGAG 59.590 66.667 12.47 0.00 0.00 4.63
2956 5504 4.760047 CGGAGCCACGGTTCCTGG 62.760 72.222 15.98 0.00 42.33 4.45
2957 5505 3.319198 GGAGCCACGGTTCCTGGA 61.319 66.667 11.47 0.00 41.46 3.86
2958 5506 2.266055 GAGCCACGGTTCCTGGAG 59.734 66.667 0.00 0.00 0.00 3.86
2959 5507 2.526873 AGCCACGGTTCCTGGAGT 60.527 61.111 0.00 0.00 0.00 3.85
2960 5508 2.113243 GAGCCACGGTTCCTGGAGTT 62.113 60.000 0.00 0.00 0.00 3.01
2961 5509 0.834687 AGCCACGGTTCCTGGAGTTA 60.835 55.000 0.00 0.00 0.00 2.24
2962 5510 0.672711 GCCACGGTTCCTGGAGTTAC 60.673 60.000 0.00 0.00 0.00 2.50
2963 5511 0.974383 CCACGGTTCCTGGAGTTACT 59.026 55.000 0.00 0.00 0.00 2.24
2964 5512 1.067071 CCACGGTTCCTGGAGTTACTC 60.067 57.143 3.36 3.36 0.00 2.59
2965 5513 1.616865 CACGGTTCCTGGAGTTACTCA 59.383 52.381 14.72 0.00 31.08 3.41
2966 5514 1.617357 ACGGTTCCTGGAGTTACTCAC 59.383 52.381 14.72 3.13 31.08 3.51
2967 5515 1.402456 CGGTTCCTGGAGTTACTCACG 60.402 57.143 14.72 4.11 31.08 4.35
2968 5516 1.067071 GGTTCCTGGAGTTACTCACGG 60.067 57.143 14.72 12.82 31.08 4.94
2969 5517 1.617357 GTTCCTGGAGTTACTCACGGT 59.383 52.381 14.72 0.00 31.08 4.83
2970 5518 2.005370 TCCTGGAGTTACTCACGGTT 57.995 50.000 14.72 0.00 31.08 4.44
2971 5519 1.891150 TCCTGGAGTTACTCACGGTTC 59.109 52.381 14.72 0.00 31.08 3.62
2972 5520 1.067071 CCTGGAGTTACTCACGGTTCC 60.067 57.143 14.72 0.00 31.08 3.62
2973 5521 1.893801 CTGGAGTTACTCACGGTTCCT 59.106 52.381 14.72 0.00 31.08 3.36
2974 5522 1.616865 TGGAGTTACTCACGGTTCCTG 59.383 52.381 14.72 0.00 31.08 3.86
2975 5523 1.067071 GGAGTTACTCACGGTTCCTGG 60.067 57.143 14.72 0.00 31.08 4.45
2976 5524 1.891150 GAGTTACTCACGGTTCCTGGA 59.109 52.381 7.59 0.00 0.00 3.86
2977 5525 1.893801 AGTTACTCACGGTTCCTGGAG 59.106 52.381 0.00 0.00 0.00 3.86
2978 5526 1.617357 GTTACTCACGGTTCCTGGAGT 59.383 52.381 13.68 13.68 42.76 3.85
2979 5527 2.005370 TACTCACGGTTCCTGGAGTT 57.995 50.000 14.16 3.81 40.76 3.01
2980 5528 2.005370 ACTCACGGTTCCTGGAGTTA 57.995 50.000 0.00 0.00 37.31 2.24
2981 5529 1.617357 ACTCACGGTTCCTGGAGTTAC 59.383 52.381 0.00 0.00 37.31 2.50
2982 5530 1.893801 CTCACGGTTCCTGGAGTTACT 59.106 52.381 0.00 0.00 0.00 2.24
2983 5531 1.891150 TCACGGTTCCTGGAGTTACTC 59.109 52.381 3.36 3.36 0.00 2.59
2984 5532 0.886563 ACGGTTCCTGGAGTTACTCG 59.113 55.000 6.27 2.00 0.00 4.18
2985 5533 0.172803 CGGTTCCTGGAGTTACTCGG 59.827 60.000 6.27 3.23 0.00 4.63
2986 5534 0.535797 GGTTCCTGGAGTTACTCGGG 59.464 60.000 13.94 13.94 0.00 5.14
2987 5535 0.535797 GTTCCTGGAGTTACTCGGGG 59.464 60.000 17.89 15.71 0.00 5.73
2988 5536 0.410663 TTCCTGGAGTTACTCGGGGA 59.589 55.000 16.65 16.65 32.94 4.81
2989 5537 0.033405 TCCTGGAGTTACTCGGGGAG 60.033 60.000 16.65 6.60 31.84 4.30
2990 5538 1.043673 CCTGGAGTTACTCGGGGAGG 61.044 65.000 14.05 9.28 33.35 4.30
2991 5539 0.033405 CTGGAGTTACTCGGGGAGGA 60.033 60.000 6.27 0.00 33.35 3.71
2992 5540 0.635009 TGGAGTTACTCGGGGAGGAT 59.365 55.000 6.27 0.00 33.35 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.515020 TCAAATGTGAAAACAGAAGTCATTTAC 57.485 29.630 0.00 0.00 34.00 2.01
118 119 4.572571 TTGGTCACGGCCACACCC 62.573 66.667 2.24 0.00 38.42 4.61
125 126 3.258228 CCCATTTATTTTTGGTCACGGC 58.742 45.455 0.00 0.00 0.00 5.68
128 129 4.284746 TGACCCCCATTTATTTTTGGTCAC 59.715 41.667 4.45 0.00 44.17 3.67
131 132 7.575499 TTATTGACCCCCATTTATTTTTGGT 57.425 32.000 0.00 0.00 0.00 3.67
132 133 8.901793 CAATTATTGACCCCCATTTATTTTTGG 58.098 33.333 0.00 0.00 0.00 3.28
136 137 9.722317 TCTACAATTATTGACCCCCATTTATTT 57.278 29.630 12.28 0.00 0.00 1.40
153 154 8.588472 CATGTCTGTATCCATCCTCTACAATTA 58.412 37.037 0.00 0.00 0.00 1.40
172 173 5.960113 AGCAGTAAGTCTTAGTCATGTCTG 58.040 41.667 2.47 0.00 0.00 3.51
177 178 6.425114 CACAACAAGCAGTAAGTCTTAGTCAT 59.575 38.462 0.00 0.00 0.00 3.06
182 183 7.667557 AGTATCACAACAAGCAGTAAGTCTTA 58.332 34.615 0.00 0.00 0.00 2.10
250 251 9.661563 TTTCTAATTACATACGACAAAGATGGT 57.338 29.630 0.00 0.00 0.00 3.55
288 289 9.807921 TTAGTTCAGAAGGAAATTAAATGGAGT 57.192 29.630 0.00 0.00 37.23 3.85
313 314 0.379316 GGTCACGTTCGCCTGTTTTT 59.621 50.000 0.00 0.00 0.00 1.94
318 319 0.788391 GTTTAGGTCACGTTCGCCTG 59.212 55.000 11.35 0.00 34.07 4.85
340 341 3.053291 TTCGGATGTGGCGTTGGC 61.053 61.111 0.00 0.00 38.90 4.52
341 342 1.511318 TTGTTCGGATGTGGCGTTGG 61.511 55.000 0.00 0.00 0.00 3.77
342 343 0.385473 GTTGTTCGGATGTGGCGTTG 60.385 55.000 0.00 0.00 0.00 4.10
343 344 1.837538 CGTTGTTCGGATGTGGCGTT 61.838 55.000 0.00 0.00 35.71 4.84
344 345 2.314647 CGTTGTTCGGATGTGGCGT 61.315 57.895 0.00 0.00 35.71 5.68
345 346 1.837538 AACGTTGTTCGGATGTGGCG 61.838 55.000 0.00 0.00 44.69 5.69
355 356 8.627428 GCAAAGATAAGAAACATAACGTTGTTC 58.373 33.333 11.99 9.09 38.85 3.18
356 357 8.132362 TGCAAAGATAAGAAACATAACGTTGTT 58.868 29.630 11.99 5.31 41.49 2.83
368 369 2.415168 CGGCGAGTGCAAAGATAAGAAA 59.585 45.455 0.00 0.00 45.35 2.52
385 386 8.304424 ACATAAGTGTACAATAGCAAACGGCG 62.304 42.308 4.80 4.80 42.00 6.46
400 401 8.839343 CCAAAAGCATATGATCACATAAGTGTA 58.161 33.333 6.97 0.00 46.01 2.90
456 457 7.650890 CAAGTGCAATGATAACTAATATGCCA 58.349 34.615 0.00 0.00 0.00 4.92
486 487 6.830324 TGAAGAGATAAACTTATGCATGCCTT 59.170 34.615 16.68 5.96 0.00 4.35
614 615 1.951602 AGGGTTTTGGCAGTACGAAAC 59.048 47.619 3.67 3.67 41.76 2.78
623 624 5.186256 TCTATTATGACAGGGTTTTGGCA 57.814 39.130 0.00 0.00 41.12 4.92
723 724 1.726853 ATCTGGCAACGCTACTTGTC 58.273 50.000 0.00 0.00 42.51 3.18
731 732 1.089920 ACATGAGAATCTGGCAACGC 58.910 50.000 0.00 0.00 42.51 4.84
755 756 5.472137 ACATTAAGTTGTTGGAGTATTGCGT 59.528 36.000 0.00 0.00 0.00 5.24
757 758 9.289303 CATAACATTAAGTTGTTGGAGTATTGC 57.711 33.333 4.97 0.00 41.50 3.56
768 769 9.295825 TGTGAGAAATCCATAACATTAAGTTGT 57.704 29.630 0.00 0.00 41.50 3.32
780 784 6.998074 GGAATGTATGGTGTGAGAAATCCATA 59.002 38.462 0.00 0.00 40.54 2.74
823 827 3.780294 AGTCTTGTACATGCCCCTGAATA 59.220 43.478 0.00 0.00 0.00 1.75
835 958 6.791867 AACAGCATATAGGAGTCTTGTACA 57.208 37.500 0.00 0.00 0.00 2.90
848 971 3.856900 TGGGAGGAGCTAACAGCATATA 58.143 45.455 0.38 0.00 45.56 0.86
849 972 2.694397 TGGGAGGAGCTAACAGCATAT 58.306 47.619 0.38 0.00 45.56 1.78
858 981 4.654262 CCTTACTATGTTTGGGAGGAGCTA 59.346 45.833 0.00 0.00 0.00 3.32
866 989 5.722021 AACAAAGCCTTACTATGTTTGGG 57.278 39.130 0.00 0.00 33.33 4.12
919 1042 3.068024 GGAAAATGTCCTTGTTGTGCTGA 59.932 43.478 0.00 0.00 43.98 4.26
975 1098 0.533755 CATCACCCGCTCCATCCTTC 60.534 60.000 0.00 0.00 0.00 3.46
984 1107 2.301296 CCTCATCTATTCATCACCCGCT 59.699 50.000 0.00 0.00 0.00 5.52
1017 1140 2.233676 TCCTTCTGCGTTCTGAGCATTA 59.766 45.455 0.00 0.00 44.26 1.90
1049 1172 4.394920 CGGTGGTGTTTCAAGCATATAGTT 59.605 41.667 0.00 0.00 0.00 2.24
1070 1193 6.214399 GGTTTAGACAATGTCCTATCTACGG 58.786 44.000 10.12 0.00 32.18 4.02
1071 1194 6.214399 GGGTTTAGACAATGTCCTATCTACG 58.786 44.000 10.12 0.00 32.18 3.51
1072 1195 6.040166 TCGGGTTTAGACAATGTCCTATCTAC 59.960 42.308 10.12 0.64 32.18 2.59
1073 1196 6.131264 TCGGGTTTAGACAATGTCCTATCTA 58.869 40.000 10.12 0.00 32.18 1.98
1074 1197 4.960469 TCGGGTTTAGACAATGTCCTATCT 59.040 41.667 10.12 0.00 32.18 1.98
1075 1198 5.163437 ACTCGGGTTTAGACAATGTCCTATC 60.163 44.000 10.12 0.00 32.18 2.08
1076 1199 4.715297 ACTCGGGTTTAGACAATGTCCTAT 59.285 41.667 10.12 0.00 32.18 2.57
1077 1200 4.081862 CACTCGGGTTTAGACAATGTCCTA 60.082 45.833 10.12 0.00 32.18 2.94
1078 1201 2.904434 ACTCGGGTTTAGACAATGTCCT 59.096 45.455 10.12 0.35 32.18 3.85
1079 1202 3.000727 CACTCGGGTTTAGACAATGTCC 58.999 50.000 10.12 0.00 32.18 4.02
1080 1203 2.415512 GCACTCGGGTTTAGACAATGTC 59.584 50.000 5.02 5.02 0.00 3.06
1081 1204 2.038557 AGCACTCGGGTTTAGACAATGT 59.961 45.455 0.00 0.00 0.00 2.71
1082 1205 2.673368 GAGCACTCGGGTTTAGACAATG 59.327 50.000 0.00 0.00 0.00 2.82
1083 1206 2.354805 GGAGCACTCGGGTTTAGACAAT 60.355 50.000 0.00 0.00 0.00 2.71
1084 1207 1.001633 GGAGCACTCGGGTTTAGACAA 59.998 52.381 0.00 0.00 0.00 3.18
1085 1208 0.606604 GGAGCACTCGGGTTTAGACA 59.393 55.000 0.00 0.00 0.00 3.41
1086 1209 0.896226 AGGAGCACTCGGGTTTAGAC 59.104 55.000 0.00 0.00 0.00 2.59
1087 1210 0.895530 CAGGAGCACTCGGGTTTAGA 59.104 55.000 0.00 0.00 0.00 2.10
1088 1211 0.608640 ACAGGAGCACTCGGGTTTAG 59.391 55.000 0.00 0.00 0.00 1.85
1089 1212 1.927487 TACAGGAGCACTCGGGTTTA 58.073 50.000 0.00 0.00 0.00 2.01
1090 1213 1.276622 ATACAGGAGCACTCGGGTTT 58.723 50.000 0.00 0.00 0.00 3.27
1091 1214 2.154567 TATACAGGAGCACTCGGGTT 57.845 50.000 0.00 0.00 0.00 4.11
1092 1215 2.383442 ATATACAGGAGCACTCGGGT 57.617 50.000 0.00 0.00 0.00 5.28
1093 1216 4.220821 ACATTATATACAGGAGCACTCGGG 59.779 45.833 0.00 0.00 0.00 5.14
1094 1217 5.392767 ACATTATATACAGGAGCACTCGG 57.607 43.478 0.00 0.00 0.00 4.63
1095 1218 6.802348 GTGTACATTATATACAGGAGCACTCG 59.198 42.308 0.00 0.00 33.26 4.18
1096 1219 7.091443 GGTGTACATTATATACAGGAGCACTC 58.909 42.308 0.00 0.00 33.26 3.51
1097 1220 6.014499 GGGTGTACATTATATACAGGAGCACT 60.014 42.308 0.00 0.00 33.26 4.40
1098 1221 6.014499 AGGGTGTACATTATATACAGGAGCAC 60.014 42.308 0.00 0.00 33.26 4.40
1099 1222 6.082031 AGGGTGTACATTATATACAGGAGCA 58.918 40.000 0.00 0.00 33.26 4.26
1100 1223 6.607004 AGGGTGTACATTATATACAGGAGC 57.393 41.667 0.00 0.00 33.26 4.70
1101 1224 8.429641 ACAAAGGGTGTACATTATATACAGGAG 58.570 37.037 0.00 0.00 39.29 3.69
1102 1225 8.326765 ACAAAGGGTGTACATTATATACAGGA 57.673 34.615 0.00 0.00 39.29 3.86
1103 1226 8.974060 AACAAAGGGTGTACATTATATACAGG 57.026 34.615 0.00 0.00 40.60 4.00
1104 1227 9.052759 GGAACAAAGGGTGTACATTATATACAG 57.947 37.037 0.00 0.00 40.60 2.74
1105 1228 8.774183 AGGAACAAAGGGTGTACATTATATACA 58.226 33.333 0.00 0.00 40.60 2.29
1114 1237 9.675464 CTTATATTTAGGAACAAAGGGTGTACA 57.325 33.333 0.00 0.00 40.60 2.90
1115 1238 9.676861 ACTTATATTTAGGAACAAAGGGTGTAC 57.323 33.333 0.00 0.00 40.60 2.90
1116 1239 9.895138 GACTTATATTTAGGAACAAAGGGTGTA 57.105 33.333 0.00 0.00 40.60 2.90
1117 1240 8.387813 TGACTTATATTTAGGAACAAAGGGTGT 58.612 33.333 0.00 0.00 44.64 4.16
1118 1241 8.674607 GTGACTTATATTTAGGAACAAAGGGTG 58.325 37.037 0.00 0.00 0.00 4.61
1119 1242 8.612145 AGTGACTTATATTTAGGAACAAAGGGT 58.388 33.333 0.00 0.00 0.00 4.34
1120 1243 9.462606 AAGTGACTTATATTTAGGAACAAAGGG 57.537 33.333 0.00 0.00 0.00 3.95
1124 1247 9.715121 ACGAAAGTGACTTATATTTAGGAACAA 57.285 29.630 0.00 0.00 46.97 2.83
1180 1303 9.396022 CAGTTCATACCACCTATGTTTCTAAAT 57.604 33.333 0.00 0.00 34.74 1.40
1181 1304 7.827236 CCAGTTCATACCACCTATGTTTCTAAA 59.173 37.037 0.00 0.00 34.74 1.85
1182 1305 7.037873 ACCAGTTCATACCACCTATGTTTCTAA 60.038 37.037 0.00 0.00 34.74 2.10
1183 1306 6.442564 ACCAGTTCATACCACCTATGTTTCTA 59.557 38.462 0.00 0.00 34.74 2.10
1184 1307 5.250774 ACCAGTTCATACCACCTATGTTTCT 59.749 40.000 0.00 0.00 34.74 2.52
1185 1308 5.354234 CACCAGTTCATACCACCTATGTTTC 59.646 44.000 0.00 0.00 34.74 2.78
1186 1309 5.253330 CACCAGTTCATACCACCTATGTTT 58.747 41.667 0.00 0.00 34.74 2.83
1187 1310 4.843728 CACCAGTTCATACCACCTATGTT 58.156 43.478 0.00 0.00 34.74 2.71
1188 1311 3.370527 GCACCAGTTCATACCACCTATGT 60.371 47.826 0.00 0.00 34.74 2.29
1189 1312 3.206150 GCACCAGTTCATACCACCTATG 58.794 50.000 0.00 0.00 34.47 2.23
1190 1313 2.172717 GGCACCAGTTCATACCACCTAT 59.827 50.000 0.00 0.00 0.00 2.57
1191 1314 1.557832 GGCACCAGTTCATACCACCTA 59.442 52.381 0.00 0.00 0.00 3.08
1192 1315 0.328258 GGCACCAGTTCATACCACCT 59.672 55.000 0.00 0.00 0.00 4.00
1193 1316 0.328258 AGGCACCAGTTCATACCACC 59.672 55.000 0.00 0.00 0.00 4.61
1194 1317 1.812571 CAAGGCACCAGTTCATACCAC 59.187 52.381 0.00 0.00 0.00 4.16
1195 1318 1.702401 TCAAGGCACCAGTTCATACCA 59.298 47.619 0.00 0.00 0.00 3.25
1196 1319 2.290323 ACTCAAGGCACCAGTTCATACC 60.290 50.000 0.00 0.00 0.00 2.73
1197 1320 3.059352 ACTCAAGGCACCAGTTCATAC 57.941 47.619 0.00 0.00 0.00 2.39
1198 1321 3.788227 AACTCAAGGCACCAGTTCATA 57.212 42.857 0.00 0.00 0.00 2.15
1199 1322 2.664402 AACTCAAGGCACCAGTTCAT 57.336 45.000 0.00 0.00 0.00 2.57
1200 1323 2.486548 GGTAACTCAAGGCACCAGTTCA 60.487 50.000 0.00 0.00 32.56 3.18
1201 1324 2.152016 GGTAACTCAAGGCACCAGTTC 58.848 52.381 0.00 0.00 32.56 3.01
1202 1325 1.493022 TGGTAACTCAAGGCACCAGTT 59.507 47.619 1.97 0.00 36.15 3.16
1203 1326 1.136828 TGGTAACTCAAGGCACCAGT 58.863 50.000 1.97 0.00 36.15 4.00
1204 1327 2.496899 ATGGTAACTCAAGGCACCAG 57.503 50.000 9.83 0.00 43.94 4.00
1205 1328 4.076394 GTTTATGGTAACTCAAGGCACCA 58.924 43.478 7.26 7.26 44.76 4.17
1206 1329 4.332828 AGTTTATGGTAACTCAAGGCACC 58.667 43.478 0.00 0.00 33.12 5.01
1207 1330 5.585047 CCTAGTTTATGGTAACTCAAGGCAC 59.415 44.000 0.00 0.00 39.08 5.01
1208 1331 5.249852 ACCTAGTTTATGGTAACTCAAGGCA 59.750 40.000 0.00 0.00 37.37 4.75
1209 1332 5.585047 CACCTAGTTTATGGTAACTCAAGGC 59.415 44.000 0.00 0.00 37.37 4.35
1210 1333 6.817140 GTCACCTAGTTTATGGTAACTCAAGG 59.183 42.308 0.00 0.00 38.77 3.61
1211 1334 6.817140 GGTCACCTAGTTTATGGTAACTCAAG 59.183 42.308 0.00 0.00 39.08 3.02
1212 1335 6.270463 TGGTCACCTAGTTTATGGTAACTCAA 59.730 38.462 0.00 0.00 39.08 3.02
1213 1336 5.781306 TGGTCACCTAGTTTATGGTAACTCA 59.219 40.000 0.00 0.00 39.08 3.41
1214 1337 6.290294 TGGTCACCTAGTTTATGGTAACTC 57.710 41.667 0.00 0.00 39.08 3.01
1215 1338 6.296259 CCTTGGTCACCTAGTTTATGGTAACT 60.296 42.308 4.47 0.00 41.13 2.24
1216 1339 5.878669 CCTTGGTCACCTAGTTTATGGTAAC 59.121 44.000 4.47 0.00 34.79 2.50
1217 1340 5.572066 GCCTTGGTCACCTAGTTTATGGTAA 60.572 44.000 4.47 0.00 34.79 2.85
1218 1341 4.080751 GCCTTGGTCACCTAGTTTATGGTA 60.081 45.833 4.47 0.00 34.79 3.25
1219 1342 3.308188 GCCTTGGTCACCTAGTTTATGGT 60.308 47.826 4.47 0.00 36.96 3.55
1220 1343 3.054361 AGCCTTGGTCACCTAGTTTATGG 60.054 47.826 4.47 0.00 0.00 2.74
1221 1344 4.222124 AGCCTTGGTCACCTAGTTTATG 57.778 45.455 4.47 0.00 0.00 1.90
1222 1345 7.873699 ATATAGCCTTGGTCACCTAGTTTAT 57.126 36.000 4.47 4.70 0.00 1.40
1223 1346 8.812972 CATATATAGCCTTGGTCACCTAGTTTA 58.187 37.037 4.47 0.00 0.00 2.01
1224 1347 7.292591 ACATATATAGCCTTGGTCACCTAGTTT 59.707 37.037 4.47 0.00 0.00 2.66
1225 1348 6.787957 ACATATATAGCCTTGGTCACCTAGTT 59.212 38.462 4.47 0.00 0.00 2.24
1226 1349 6.211584 CACATATATAGCCTTGGTCACCTAGT 59.788 42.308 4.47 0.00 0.00 2.57
1227 1350 6.437477 TCACATATATAGCCTTGGTCACCTAG 59.563 42.308 0.00 0.00 0.00 3.02
1228 1351 6.319715 TCACATATATAGCCTTGGTCACCTA 58.680 40.000 0.00 0.00 0.00 3.08
1229 1352 5.155161 TCACATATATAGCCTTGGTCACCT 58.845 41.667 0.00 0.00 0.00 4.00
1230 1353 5.483685 TCACATATATAGCCTTGGTCACC 57.516 43.478 0.00 0.00 0.00 4.02
1231 1354 5.352569 GCATCACATATATAGCCTTGGTCAC 59.647 44.000 0.00 0.00 0.00 3.67
1232 1355 5.012975 TGCATCACATATATAGCCTTGGTCA 59.987 40.000 0.00 0.00 0.00 4.02
1233 1356 5.491070 TGCATCACATATATAGCCTTGGTC 58.509 41.667 0.00 0.00 0.00 4.02
1234 1357 5.503634 TGCATCACATATATAGCCTTGGT 57.496 39.130 0.00 0.00 0.00 3.67
1235 1358 6.354938 AGATGCATCACATATATAGCCTTGG 58.645 40.000 27.81 0.00 39.84 3.61
1236 1359 7.224949 CAGAGATGCATCACATATATAGCCTTG 59.775 40.741 27.81 8.09 39.84 3.61
1237 1360 7.273712 CAGAGATGCATCACATATATAGCCTT 58.726 38.462 27.81 2.16 39.84 4.35
1238 1361 6.685873 GCAGAGATGCATCACATATATAGCCT 60.686 42.308 27.81 2.62 39.84 4.58
1239 1362 5.466058 GCAGAGATGCATCACATATATAGCC 59.534 44.000 27.81 0.00 39.84 3.93
1240 1363 5.466058 GGCAGAGATGCATCACATATATAGC 59.534 44.000 27.81 16.21 39.84 2.97
1241 1364 6.818233 AGGCAGAGATGCATCACATATATAG 58.182 40.000 27.81 8.38 39.84 1.31
1242 1365 6.803366 AGGCAGAGATGCATCACATATATA 57.197 37.500 27.81 0.00 39.84 0.86
1243 1366 5.695424 AGGCAGAGATGCATCACATATAT 57.305 39.130 27.81 5.74 39.84 0.86
1244 1367 6.579865 CATAGGCAGAGATGCATCACATATA 58.420 40.000 27.81 13.34 39.84 0.86
1245 1368 5.429130 CATAGGCAGAGATGCATCACATAT 58.571 41.667 27.81 16.96 39.84 1.78
1246 1369 4.828829 CATAGGCAGAGATGCATCACATA 58.171 43.478 27.81 15.61 39.84 2.29
1247 1370 3.676093 CATAGGCAGAGATGCATCACAT 58.324 45.455 27.81 14.05 43.54 3.21
1248 1371 2.809299 GCATAGGCAGAGATGCATCACA 60.809 50.000 27.81 6.52 46.29 3.58
1249 1372 1.805345 GCATAGGCAGAGATGCATCAC 59.195 52.381 27.81 21.68 46.29 3.06
1250 1373 2.180432 GCATAGGCAGAGATGCATCA 57.820 50.000 27.81 6.28 46.29 3.07
1255 1378 3.003482 GCAAAGAAGCATAGGCAGAGATG 59.997 47.826 0.67 0.00 44.61 2.90
1256 1379 3.212685 GCAAAGAAGCATAGGCAGAGAT 58.787 45.455 0.67 0.00 44.61 2.75
1257 1380 2.636830 GCAAAGAAGCATAGGCAGAGA 58.363 47.619 0.67 0.00 44.61 3.10
1258 1381 1.329906 CGCAAAGAAGCATAGGCAGAG 59.670 52.381 0.67 0.00 44.61 3.35
1259 1382 1.372582 CGCAAAGAAGCATAGGCAGA 58.627 50.000 0.67 0.00 44.61 4.26
1260 1383 0.379669 CCGCAAAGAAGCATAGGCAG 59.620 55.000 0.67 0.00 44.61 4.85
1261 1384 0.035534 TCCGCAAAGAAGCATAGGCA 60.036 50.000 0.67 0.00 44.61 4.75
1262 1385 1.094785 TTCCGCAAAGAAGCATAGGC 58.905 50.000 0.00 0.00 41.61 3.93
1263 1386 2.096496 CAGTTCCGCAAAGAAGCATAGG 59.904 50.000 0.00 0.00 0.00 2.57
1264 1387 2.096496 CCAGTTCCGCAAAGAAGCATAG 59.904 50.000 0.00 0.00 0.00 2.23
1265 1388 2.083774 CCAGTTCCGCAAAGAAGCATA 58.916 47.619 0.00 0.00 0.00 3.14
1266 1389 0.883833 CCAGTTCCGCAAAGAAGCAT 59.116 50.000 0.00 0.00 0.00 3.79
1267 1390 0.465460 ACCAGTTCCGCAAAGAAGCA 60.465 50.000 0.00 0.00 0.00 3.91
1268 1391 0.238553 GACCAGTTCCGCAAAGAAGC 59.761 55.000 0.00 0.00 0.00 3.86
1269 1392 1.884235 AGACCAGTTCCGCAAAGAAG 58.116 50.000 0.00 0.00 0.00 2.85
1270 1393 2.341846 AAGACCAGTTCCGCAAAGAA 57.658 45.000 0.00 0.00 0.00 2.52
1271 1394 3.695830 ATAAGACCAGTTCCGCAAAGA 57.304 42.857 0.00 0.00 0.00 2.52
1272 1395 6.436843 AAATATAAGACCAGTTCCGCAAAG 57.563 37.500 0.00 0.00 0.00 2.77
1273 1396 6.431543 TCAAAATATAAGACCAGTTCCGCAAA 59.568 34.615 0.00 0.00 0.00 3.68
1274 1397 5.941058 TCAAAATATAAGACCAGTTCCGCAA 59.059 36.000 0.00 0.00 0.00 4.85
1275 1398 5.492895 TCAAAATATAAGACCAGTTCCGCA 58.507 37.500 0.00 0.00 0.00 5.69
1276 1399 6.483640 AGATCAAAATATAAGACCAGTTCCGC 59.516 38.462 0.00 0.00 0.00 5.54
1277 1400 7.495934 ACAGATCAAAATATAAGACCAGTTCCG 59.504 37.037 0.00 0.00 0.00 4.30
1278 1401 8.738645 ACAGATCAAAATATAAGACCAGTTCC 57.261 34.615 0.00 0.00 0.00 3.62
1279 1402 8.831550 GGACAGATCAAAATATAAGACCAGTTC 58.168 37.037 0.00 0.00 0.00 3.01
1280 1403 8.328758 TGGACAGATCAAAATATAAGACCAGTT 58.671 33.333 0.00 0.00 0.00 3.16
1281 1404 7.861629 TGGACAGATCAAAATATAAGACCAGT 58.138 34.615 0.00 0.00 0.00 4.00
1282 1405 8.781196 CATGGACAGATCAAAATATAAGACCAG 58.219 37.037 0.00 0.00 0.00 4.00
1283 1406 8.493607 TCATGGACAGATCAAAATATAAGACCA 58.506 33.333 0.00 0.00 0.00 4.02
1284 1407 8.778358 GTCATGGACAGATCAAAATATAAGACC 58.222 37.037 0.00 0.00 32.09 3.85
1285 1408 9.330063 TGTCATGGACAGATCAAAATATAAGAC 57.670 33.333 0.00 0.00 37.67 3.01
1286 1409 9.330063 GTGTCATGGACAGATCAAAATATAAGA 57.670 33.333 0.00 0.00 43.57 2.10
1287 1410 8.562892 GGTGTCATGGACAGATCAAAATATAAG 58.437 37.037 0.00 0.00 43.57 1.73
1288 1411 7.502226 GGGTGTCATGGACAGATCAAAATATAA 59.498 37.037 0.00 0.00 43.57 0.98
1289 1412 6.998074 GGGTGTCATGGACAGATCAAAATATA 59.002 38.462 0.00 0.00 43.57 0.86
1290 1413 5.829924 GGGTGTCATGGACAGATCAAAATAT 59.170 40.000 0.00 0.00 43.57 1.28
1291 1414 5.044919 AGGGTGTCATGGACAGATCAAAATA 60.045 40.000 0.00 0.00 43.57 1.40
1386 1509 3.059868 CACCCATGCTAACGTAATAAGCG 60.060 47.826 0.00 0.00 39.14 4.68
1398 1521 4.520111 GCATCAAACATATCACCCATGCTA 59.480 41.667 0.00 0.00 33.98 3.49
1729 2050 1.831580 AATGCAAGTGCCTCTCTTCC 58.168 50.000 0.00 0.00 41.18 3.46
1779 2116 3.672808 ACCATGCTCTGAAGTTTCTCTG 58.327 45.455 0.00 0.00 0.00 3.35
1786 2123 3.276857 CAATGCTACCATGCTCTGAAGT 58.723 45.455 0.00 0.00 0.00 3.01
1843 2180 9.829507 CTGACAGTAGATAATTCCAAGAAGAAT 57.170 33.333 0.00 0.00 38.11 2.40
1913 2250 7.955864 CGGTAGAGTTCTTTTGTTTAATAGCAC 59.044 37.037 0.00 0.00 0.00 4.40
1960 2333 6.121776 TCCCTCTTGTGAGTTTAATAGCAA 57.878 37.500 0.00 0.00 38.61 3.91
2077 3732 7.040892 GCAGACATAGCCAATTCAATATTCTGA 60.041 37.037 0.00 0.00 0.00 3.27
2083 3738 6.772360 TTTGCAGACATAGCCAATTCAATA 57.228 33.333 0.00 0.00 0.00 1.90
2136 3791 9.898152 TTAGTTTTGAAAATGAACAAATCCCTT 57.102 25.926 0.00 0.00 36.21 3.95
2286 4325 6.929606 GGATGGGTTAACTTGTACTATAGCAG 59.070 42.308 5.42 0.00 0.00 4.24
2305 4459 0.846015 TGCTATGGAGTTGGGATGGG 59.154 55.000 0.00 0.00 0.00 4.00
2363 4526 7.330208 GCTCAACATGCTGAATTTGTAAAATCT 59.670 33.333 0.00 0.00 0.00 2.40
2493 4661 2.678336 CGTAGCTTTCCTGGGTGATTTC 59.322 50.000 0.00 0.00 0.00 2.17
2635 4824 0.808847 TGCTCGCTATTGCTCTGCTG 60.809 55.000 0.00 0.00 36.97 4.41
2661 4853 3.498397 GCTGCTACTTCTGTTTGCTGTTA 59.502 43.478 0.00 0.00 0.00 2.41
2694 4905 1.208614 CTTGTTGCTGCTCGCTTCC 59.791 57.895 0.00 0.00 40.11 3.46
2741 5245 3.730715 AGCGTCGCTTTTTCTCATTTTTG 59.269 39.130 15.47 0.00 33.89 2.44
2756 5304 1.260561 TCTTTTCTTTGTCAGCGTCGC 59.739 47.619 9.80 9.80 0.00 5.19
2808 5356 1.565156 GACATCGCCACGAACAGCAA 61.565 55.000 0.00 0.00 39.99 3.91
2826 5374 1.351076 TCAGTCCTTGTGCCATCTGA 58.649 50.000 0.00 0.00 0.00 3.27
2828 5376 1.911357 TCATCAGTCCTTGTGCCATCT 59.089 47.619 0.00 0.00 0.00 2.90
2843 5391 2.621338 GTCCTGAATTCGCTGTCATCA 58.379 47.619 0.04 0.00 0.00 3.07
2844 5392 1.590238 CGTCCTGAATTCGCTGTCATC 59.410 52.381 0.04 0.00 0.00 2.92
2876 5424 2.588620 ACTTCTTCCTCGACACTGACT 58.411 47.619 0.00 0.00 0.00 3.41
2879 5427 4.456222 TCTCTTACTTCTTCCTCGACACTG 59.544 45.833 0.00 0.00 0.00 3.66
2886 5434 3.379057 CGGGTCTCTCTTACTTCTTCCTC 59.621 52.174 0.00 0.00 0.00 3.71
2898 5446 2.705821 CGAAGCTGCGGGTCTCTCT 61.706 63.158 6.07 0.00 0.00 3.10
2908 5456 1.581447 CCCAAAGGTTCGAAGCTGC 59.419 57.895 28.91 2.56 36.76 5.25
2910 5458 1.603739 GGCCCAAAGGTTCGAAGCT 60.604 57.895 23.57 23.57 38.62 3.74
2916 5464 1.628846 TCTACTCTGGCCCAAAGGTTC 59.371 52.381 0.00 0.00 34.57 3.62
2919 5467 0.108138 CGTCTACTCTGGCCCAAAGG 60.108 60.000 0.00 0.00 0.00 3.11
2921 5469 1.295423 GCGTCTACTCTGGCCCAAA 59.705 57.895 0.00 0.00 0.00 3.28
2926 5474 2.409651 CTCCGCGTCTACTCTGGC 59.590 66.667 4.92 0.00 0.00 4.85
2930 5478 2.102553 GTGGCTCCGCGTCTACTC 59.897 66.667 4.92 0.00 0.00 2.59
2942 5490 0.834687 TAACTCCAGGAACCGTGGCT 60.835 55.000 0.00 0.00 34.77 4.75
2943 5491 0.672711 GTAACTCCAGGAACCGTGGC 60.673 60.000 0.00 0.00 34.77 5.01
2944 5492 0.974383 AGTAACTCCAGGAACCGTGG 59.026 55.000 0.00 0.00 36.28 4.94
2945 5493 1.616865 TGAGTAACTCCAGGAACCGTG 59.383 52.381 0.00 0.00 0.00 4.94
2946 5494 1.617357 GTGAGTAACTCCAGGAACCGT 59.383 52.381 0.00 0.00 0.00 4.83
2947 5495 1.402456 CGTGAGTAACTCCAGGAACCG 60.402 57.143 0.00 0.00 0.00 4.44
2948 5496 1.067071 CCGTGAGTAACTCCAGGAACC 60.067 57.143 0.00 0.00 31.05 3.62
2949 5497 1.617357 ACCGTGAGTAACTCCAGGAAC 59.383 52.381 0.00 0.00 32.85 3.62
2950 5498 2.005370 ACCGTGAGTAACTCCAGGAA 57.995 50.000 0.00 0.00 32.85 3.36
2951 5499 1.891150 GAACCGTGAGTAACTCCAGGA 59.109 52.381 0.00 0.00 32.85 3.86
2952 5500 1.067071 GGAACCGTGAGTAACTCCAGG 60.067 57.143 0.00 0.00 34.06 4.45
2953 5501 1.893801 AGGAACCGTGAGTAACTCCAG 59.106 52.381 0.00 0.00 0.00 3.86
2954 5502 1.616865 CAGGAACCGTGAGTAACTCCA 59.383 52.381 0.00 0.00 0.00 3.86
2955 5503 1.067071 CCAGGAACCGTGAGTAACTCC 60.067 57.143 0.00 0.00 0.00 3.85
2956 5504 1.891150 TCCAGGAACCGTGAGTAACTC 59.109 52.381 0.00 0.00 0.00 3.01
2957 5505 1.893801 CTCCAGGAACCGTGAGTAACT 59.106 52.381 0.00 0.00 0.00 2.24
2958 5506 1.617357 ACTCCAGGAACCGTGAGTAAC 59.383 52.381 13.60 0.00 36.36 2.50
2959 5507 2.005370 ACTCCAGGAACCGTGAGTAA 57.995 50.000 13.60 0.00 36.36 2.24
2960 5508 2.005370 AACTCCAGGAACCGTGAGTA 57.995 50.000 14.89 0.00 37.09 2.59
2961 5509 1.617357 GTAACTCCAGGAACCGTGAGT 59.383 52.381 10.78 10.78 39.66 3.41
2962 5510 1.893801 AGTAACTCCAGGAACCGTGAG 59.106 52.381 9.79 9.79 0.00 3.51
2963 5511 1.891150 GAGTAACTCCAGGAACCGTGA 59.109 52.381 0.00 0.00 0.00 4.35
2964 5512 1.402456 CGAGTAACTCCAGGAACCGTG 60.402 57.143 0.00 0.00 0.00 4.94
2965 5513 0.886563 CGAGTAACTCCAGGAACCGT 59.113 55.000 0.00 0.00 0.00 4.83
2966 5514 0.172803 CCGAGTAACTCCAGGAACCG 59.827 60.000 0.00 0.00 0.00 4.44
2967 5515 0.535797 CCCGAGTAACTCCAGGAACC 59.464 60.000 0.00 0.00 0.00 3.62
2968 5516 0.535797 CCCCGAGTAACTCCAGGAAC 59.464 60.000 0.00 0.00 0.00 3.62
2969 5517 0.410663 TCCCCGAGTAACTCCAGGAA 59.589 55.000 0.00 0.00 29.05 3.36
2970 5518 0.033405 CTCCCCGAGTAACTCCAGGA 60.033 60.000 0.00 0.00 30.66 3.86
2971 5519 1.043673 CCTCCCCGAGTAACTCCAGG 61.044 65.000 0.00 0.00 0.00 4.45
2972 5520 0.033405 TCCTCCCCGAGTAACTCCAG 60.033 60.000 0.00 0.00 0.00 3.86
2973 5521 0.635009 ATCCTCCCCGAGTAACTCCA 59.365 55.000 0.00 0.00 0.00 3.86
2974 5522 3.535574 ATCCTCCCCGAGTAACTCC 57.464 57.895 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.