Multiple sequence alignment - TraesCS2B01G245400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G245400 chr2B 100.000 2612 0 0 1 2612 249457038 249459649 0.000000e+00 4824.0
1 TraesCS2B01G245400 chr2B 96.154 52 1 1 1550 1601 249458548 249458598 1.670000e-12 84.2
2 TraesCS2B01G245400 chr2B 96.154 52 1 1 1511 1561 249458587 249458638 1.670000e-12 84.2
3 TraesCS2B01G245400 chr2D 89.730 2444 160 43 1 2396 193337496 193339896 0.000000e+00 3038.0
4 TraesCS2B01G245400 chr2D 80.357 560 78 21 132 664 68920106 68920660 1.880000e-106 396.0
5 TraesCS2B01G245400 chr2D 78.431 153 28 4 2225 2375 47441219 47441070 7.700000e-16 95.3
6 TraesCS2B01G245400 chr2A 84.357 1937 166 71 679 2512 207487487 207489389 0.000000e+00 1772.0
7 TraesCS2B01G245400 chr2A 82.484 628 85 8 62 664 765574507 765573880 6.400000e-146 527.0
8 TraesCS2B01G245400 chr2A 73.673 490 95 24 2038 2503 663645339 663645818 2.690000e-35 159.0
9 TraesCS2B01G245400 chr2A 75.831 331 69 8 2021 2344 50968930 50968604 9.680000e-35 158.0
10 TraesCS2B01G245400 chr3D 81.111 630 93 9 60 664 601003827 601004455 5.060000e-132 481.0
11 TraesCS2B01G245400 chr3D 80.616 552 85 8 135 664 581096202 581095651 8.700000e-110 407.0
12 TraesCS2B01G245400 chr3D 79.431 598 93 19 93 664 553333648 553334241 1.880000e-106 396.0
13 TraesCS2B01G245400 chr1A 80.922 629 93 13 62 664 447640115 447639488 3.040000e-129 472.0
14 TraesCS2B01G245400 chr4B 80.968 620 89 15 62 655 64076372 64076988 5.090000e-127 464.0
15 TraesCS2B01G245400 chr3A 80.383 627 99 9 62 664 111881168 111880542 3.060000e-124 455.0
16 TraesCS2B01G245400 chr4A 79.439 642 104 14 49 664 601315861 601315222 1.860000e-116 429.0
17 TraesCS2B01G245400 chr1B 79.495 634 98 14 59 664 46831642 46832271 3.110000e-114 422.0
18 TraesCS2B01G245400 chr1B 78.560 611 104 16 76 664 137641733 137642338 6.820000e-101 377.0
19 TraesCS2B01G245400 chr1B 77.882 642 108 16 76 687 507384672 507385309 4.110000e-98 368.0
20 TraesCS2B01G245400 chr7A 79.167 648 102 15 45 664 287892204 287892846 4.020000e-113 418.0
21 TraesCS2B01G245400 chr7A 86.111 72 6 3 2276 2345 657709355 657709424 1.000000e-09 75.0
22 TraesCS2B01G245400 chr7D 80.037 541 84 11 147 664 16419547 16420086 1.900000e-101 379.0
23 TraesCS2B01G245400 chr5B 82.493 337 37 9 350 664 646377605 646377941 2.560000e-70 276.0
24 TraesCS2B01G245400 chr3B 78.320 369 71 9 300 664 389338761 389339124 2.020000e-56 230.0
25 TraesCS2B01G245400 chr5A 90.244 41 2 2 2533 2573 275002705 275002743 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G245400 chr2B 249457038 249459649 2611 False 1664.133333 4824 97.436 1 2612 3 chr2B.!!$F1 2611
1 TraesCS2B01G245400 chr2D 193337496 193339896 2400 False 3038.000000 3038 89.730 1 2396 1 chr2D.!!$F2 2395
2 TraesCS2B01G245400 chr2D 68920106 68920660 554 False 396.000000 396 80.357 132 664 1 chr2D.!!$F1 532
3 TraesCS2B01G245400 chr2A 207487487 207489389 1902 False 1772.000000 1772 84.357 679 2512 1 chr2A.!!$F1 1833
4 TraesCS2B01G245400 chr2A 765573880 765574507 627 True 527.000000 527 82.484 62 664 1 chr2A.!!$R2 602
5 TraesCS2B01G245400 chr3D 601003827 601004455 628 False 481.000000 481 81.111 60 664 1 chr3D.!!$F2 604
6 TraesCS2B01G245400 chr3D 581095651 581096202 551 True 407.000000 407 80.616 135 664 1 chr3D.!!$R1 529
7 TraesCS2B01G245400 chr3D 553333648 553334241 593 False 396.000000 396 79.431 93 664 1 chr3D.!!$F1 571
8 TraesCS2B01G245400 chr1A 447639488 447640115 627 True 472.000000 472 80.922 62 664 1 chr1A.!!$R1 602
9 TraesCS2B01G245400 chr4B 64076372 64076988 616 False 464.000000 464 80.968 62 655 1 chr4B.!!$F1 593
10 TraesCS2B01G245400 chr3A 111880542 111881168 626 True 455.000000 455 80.383 62 664 1 chr3A.!!$R1 602
11 TraesCS2B01G245400 chr4A 601315222 601315861 639 True 429.000000 429 79.439 49 664 1 chr4A.!!$R1 615
12 TraesCS2B01G245400 chr1B 46831642 46832271 629 False 422.000000 422 79.495 59 664 1 chr1B.!!$F1 605
13 TraesCS2B01G245400 chr1B 137641733 137642338 605 False 377.000000 377 78.560 76 664 1 chr1B.!!$F2 588
14 TraesCS2B01G245400 chr1B 507384672 507385309 637 False 368.000000 368 77.882 76 687 1 chr1B.!!$F3 611
15 TraesCS2B01G245400 chr7A 287892204 287892846 642 False 418.000000 418 79.167 45 664 1 chr7A.!!$F1 619
16 TraesCS2B01G245400 chr7D 16419547 16420086 539 False 379.000000 379 80.037 147 664 1 chr7D.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 896 0.251165 CCGGACTGAAAACCCATGGT 60.251 55.0 11.73 0.0 37.65 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2492 2680 0.036388 ATACGACAAGTGCCTGGTGG 60.036 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.122711 GCATTTCCATGGTCAAATCAAAAGG 59.877 40.000 12.58 5.17 0.00 3.11
28 29 6.684897 TTCCATGGTCAAATCAAAAGGAAT 57.315 33.333 12.58 0.00 0.00 3.01
133 135 4.754322 TCGTTGATCCATCTCATTTTCGA 58.246 39.130 0.00 0.00 0.00 3.71
185 187 4.087892 GCCCTTGCCTGCGAGAGA 62.088 66.667 7.98 0.00 0.00 3.10
205 207 7.322222 CGAGAGAGCTCTGTTTTTAATTGTTTG 59.678 37.037 23.91 0.00 40.61 2.93
237 243 3.127203 TGTTAGGGTTTGTGTGTTGTTCG 59.873 43.478 0.00 0.00 0.00 3.95
376 385 1.293179 GCCATGGTGGTTTTGCTCC 59.707 57.895 14.67 0.00 40.46 4.70
476 509 2.202756 GGGCCTTAGCACGACGAG 60.203 66.667 0.84 0.00 42.56 4.18
482 515 0.458025 CTTAGCACGACGAGTTCCCC 60.458 60.000 0.00 0.00 0.00 4.81
526 559 2.440599 GGCTTTGGCAAGGGAGGA 59.559 61.111 11.55 0.00 40.87 3.71
593 626 2.029828 GTCGCTAGGTGGTCTATGGATG 60.030 54.545 0.00 0.00 0.00 3.51
644 677 3.563390 TCGTTGTGCTGTCATGATTGAAA 59.437 39.130 0.00 0.00 32.48 2.69
846 896 0.251165 CCGGACTGAAAACCCATGGT 60.251 55.000 11.73 0.00 37.65 3.55
863 913 4.324099 CCATGGTCAAGAAATCTCAGACCT 60.324 45.833 23.91 13.70 44.58 3.85
864 914 5.104776 CCATGGTCAAGAAATCTCAGACCTA 60.105 44.000 23.91 15.94 44.58 3.08
868 918 2.863137 CAAGAAATCTCAGACCTAGCGC 59.137 50.000 0.00 0.00 0.00 5.92
869 919 1.410882 AGAAATCTCAGACCTAGCGCC 59.589 52.381 2.29 0.00 0.00 6.53
870 920 1.137086 GAAATCTCAGACCTAGCGCCA 59.863 52.381 2.29 0.00 0.00 5.69
871 921 1.195115 AATCTCAGACCTAGCGCCAA 58.805 50.000 2.29 0.00 0.00 4.52
922 972 1.996798 TAACGGGAGCCAGATCCTAG 58.003 55.000 1.39 0.00 39.50 3.02
957 1009 1.406887 CCAGGTACACATACAGGCCAC 60.407 57.143 5.01 0.00 32.40 5.01
1523 1575 3.155167 CTACGTCCTCCAGGGGGC 61.155 72.222 0.00 0.00 35.41 5.80
1537 1589 4.357279 GGGCCAGCAGCTCCAACT 62.357 66.667 4.39 0.00 43.05 3.16
1538 1590 3.060615 GGCCAGCAGCTCCAACTG 61.061 66.667 0.00 0.00 43.05 3.16
1544 1596 3.867771 CAGCTCCAACTGCGTCTC 58.132 61.111 0.00 0.00 35.28 3.36
1545 1597 2.091112 CAGCTCCAACTGCGTCTCG 61.091 63.158 0.00 0.00 35.28 4.04
1546 1598 2.258591 GCTCCAACTGCGTCTCGA 59.741 61.111 0.00 0.00 0.00 4.04
1547 1599 1.803519 GCTCCAACTGCGTCTCGAG 60.804 63.158 5.93 5.93 0.00 4.04
1548 1600 1.153939 CTCCAACTGCGTCTCGAGG 60.154 63.158 13.56 0.00 0.00 4.63
1549 1601 2.125912 CCAACTGCGTCTCGAGGG 60.126 66.667 13.56 6.31 0.00 4.30
1550 1602 2.651361 CAACTGCGTCTCGAGGGT 59.349 61.111 13.56 1.64 0.00 4.34
1551 1603 1.444553 CAACTGCGTCTCGAGGGTC 60.445 63.158 13.56 2.98 0.00 4.46
1552 1604 2.637383 AACTGCGTCTCGAGGGTCC 61.637 63.158 13.56 0.00 0.00 4.46
1553 1605 4.180946 CTGCGTCTCGAGGGTCCG 62.181 72.222 13.56 10.97 0.00 4.79
1556 1608 4.477975 CGTCTCGAGGGTCCGCAC 62.478 72.222 13.56 0.00 0.00 5.34
1557 1609 3.371063 GTCTCGAGGGTCCGCACA 61.371 66.667 13.56 0.00 0.00 4.57
1558 1610 3.062466 TCTCGAGGGTCCGCACAG 61.062 66.667 13.56 0.00 0.00 3.66
1559 1611 4.135153 CTCGAGGGTCCGCACAGG 62.135 72.222 3.91 0.00 42.97 4.00
1630 1702 4.261489 CGTAATTACTAGGCGTGTCCATCT 60.261 45.833 13.56 0.00 37.29 2.90
1637 1709 1.072331 AGGCGTGTCCATCTTCTTGTT 59.928 47.619 0.00 0.00 37.29 2.83
1695 1775 1.205417 TCGGAAACTATGGACGTTCCC 59.795 52.381 0.00 0.00 35.03 3.97
1727 1821 6.373774 AGTTACATTCTGAAGCTGATTCCAAG 59.626 38.462 2.88 0.00 37.08 3.61
1745 1839 3.306364 CCAAGTGACTCTACCAGTTCCAG 60.306 52.174 0.00 0.00 34.41 3.86
1748 1842 3.574826 AGTGACTCTACCAGTTCCAGTTC 59.425 47.826 0.00 0.00 34.41 3.01
1874 1989 8.903820 AGCTTGGTCTAAATTACCATTATTGTC 58.096 33.333 0.00 0.00 46.16 3.18
1913 2028 8.994170 CCTAAAATAGCATTAAGAGGTTAGAGC 58.006 37.037 0.00 0.00 0.00 4.09
1916 2031 8.986929 AAATAGCATTAAGAGGTTAGAGCATT 57.013 30.769 0.00 0.00 0.00 3.56
1918 2033 8.986929 ATAGCATTAAGAGGTTAGAGCATTTT 57.013 30.769 0.00 0.00 0.00 1.82
1921 2036 7.066766 AGCATTAAGAGGTTAGAGCATTTTCAG 59.933 37.037 0.00 0.00 0.00 3.02
1926 2041 0.726827 TTAGAGCATTTTCAGCGCGG 59.273 50.000 8.83 0.00 36.87 6.46
1932 2047 1.303317 ATTTTCAGCGCGGACCCTT 60.303 52.632 10.55 0.00 0.00 3.95
1939 2054 2.047939 CGCGGACCCTTAAACCGT 60.048 61.111 0.00 0.00 46.95 4.83
1945 2062 2.807837 CGGACCCTTAAACCGTTCAACT 60.808 50.000 0.00 0.00 41.47 3.16
1946 2063 2.551032 GGACCCTTAAACCGTTCAACTG 59.449 50.000 0.00 0.00 0.00 3.16
1955 2072 2.019951 CGTTCAACTGTCCGGACCG 61.020 63.158 31.19 26.90 0.00 4.79
1961 2078 2.432628 CTGTCCGGACCGAGTTGC 60.433 66.667 31.19 4.69 0.00 4.17
1986 2107 2.562298 ACGCAAACCATCCAATGATGTT 59.438 40.909 2.24 0.00 45.78 2.71
2000 2121 5.067674 CCAATGATGTTCCGTATTTGTCCAT 59.932 40.000 0.00 0.00 0.00 3.41
2012 2133 2.818274 GTCCATGGACCGGTTCGC 60.818 66.667 31.37 6.29 39.08 4.70
2026 2147 0.872388 GTTCGCGTGTCCATTTTCCT 59.128 50.000 5.77 0.00 0.00 3.36
2032 2153 2.610232 GCGTGTCCATTTTCCTGCAAAT 60.610 45.455 0.00 0.00 0.00 2.32
2033 2154 3.244976 CGTGTCCATTTTCCTGCAAATC 58.755 45.455 0.00 0.00 0.00 2.17
2034 2155 3.305267 CGTGTCCATTTTCCTGCAAATCA 60.305 43.478 0.00 0.00 0.00 2.57
2044 2177 0.323178 CTGCAAATCAGGGGCTCTGT 60.323 55.000 15.27 0.00 43.76 3.41
2103 2237 0.835971 GGCCCACCCAAAATCAAGGT 60.836 55.000 0.00 0.00 0.00 3.50
2123 2257 3.645268 GAGCCCGCCCATTTGGAGT 62.645 63.158 0.00 0.00 37.39 3.85
2125 2259 2.755469 CCCGCCCATTTGGAGTGG 60.755 66.667 0.00 4.65 37.39 4.00
2126 2260 2.035626 CCGCCCATTTGGAGTGGT 59.964 61.111 0.00 0.00 37.39 4.16
2127 2261 2.046285 CCGCCCATTTGGAGTGGTC 61.046 63.158 0.00 0.00 37.39 4.02
2130 2264 1.598701 GCCCATTTGGAGTGGTCTGC 61.599 60.000 0.00 0.00 37.39 4.26
2183 2327 1.133730 ACCCTCTCGACTACCATCCTC 60.134 57.143 0.00 0.00 0.00 3.71
2196 2340 0.979665 CATCCTCCCGCTATCCACAT 59.020 55.000 0.00 0.00 0.00 3.21
2213 2357 3.443681 CCACATCAATACTCGCCCTTTTT 59.556 43.478 0.00 0.00 0.00 1.94
2219 2363 2.741486 TACTCGCCCTTTTTGCCGCT 62.741 55.000 0.00 0.00 0.00 5.52
2220 2364 2.032834 TCGCCCTTTTTGCCGCTA 59.967 55.556 0.00 0.00 0.00 4.26
2223 2367 2.272447 GCCCTTTTTGCCGCTACCA 61.272 57.895 0.00 0.00 0.00 3.25
2301 2445 1.003233 GGTCACCCGGAAGATCAACTT 59.997 52.381 0.73 0.00 42.03 2.66
2351 2496 0.889186 GAAGGCAAAGGACAAGGCGA 60.889 55.000 0.00 0.00 0.00 5.54
2370 2515 0.389948 AGCGACGTAAAGAAGGGCAG 60.390 55.000 0.00 0.00 0.00 4.85
2373 2518 1.359459 GACGTAAAGAAGGGCAGCGG 61.359 60.000 0.00 0.00 0.00 5.52
2376 2521 3.969250 TAAAGAAGGGCAGCGGGCG 62.969 63.158 3.99 0.00 46.16 6.13
2434 2622 4.697756 CGTCCTGGCCGGAGCAAA 62.698 66.667 15.09 0.00 44.20 3.68
2447 2635 0.540597 GAGCAAAACCAGCCTCCCTT 60.541 55.000 0.00 0.00 0.00 3.95
2455 2643 0.461961 CCAGCCTCCCTTCTTCTACG 59.538 60.000 0.00 0.00 0.00 3.51
2472 2660 4.452733 GCCGCCAAGTAGCTCGGT 62.453 66.667 10.55 0.00 43.45 4.69
2473 2661 2.202756 CCGCCAAGTAGCTCGGTC 60.203 66.667 0.00 0.00 37.33 4.79
2474 2662 2.579787 CGCCAAGTAGCTCGGTCG 60.580 66.667 0.00 0.00 0.00 4.79
2512 2700 1.359848 CACCAGGCACTTGTCGTATC 58.640 55.000 0.00 0.00 34.60 2.24
2513 2701 0.249398 ACCAGGCACTTGTCGTATCC 59.751 55.000 0.00 0.00 34.60 2.59
2514 2702 0.249120 CCAGGCACTTGTCGTATCCA 59.751 55.000 0.00 0.00 34.60 3.41
2515 2703 1.338674 CCAGGCACTTGTCGTATCCAA 60.339 52.381 0.00 0.00 34.60 3.53
2516 2704 2.422597 CAGGCACTTGTCGTATCCAAA 58.577 47.619 0.00 0.00 34.60 3.28
2517 2705 2.159627 CAGGCACTTGTCGTATCCAAAC 59.840 50.000 0.00 0.00 34.60 2.93
2518 2706 2.147958 GGCACTTGTCGTATCCAAACA 58.852 47.619 0.00 0.00 0.00 2.83
2519 2707 2.159627 GGCACTTGTCGTATCCAAACAG 59.840 50.000 0.00 0.00 0.00 3.16
2520 2708 2.159627 GCACTTGTCGTATCCAAACAGG 59.840 50.000 0.00 0.00 39.47 4.00
2521 2709 3.399330 CACTTGTCGTATCCAAACAGGT 58.601 45.455 0.00 0.00 39.02 4.00
2522 2710 3.432252 CACTTGTCGTATCCAAACAGGTC 59.568 47.826 0.00 0.00 39.02 3.85
2523 2711 2.754946 TGTCGTATCCAAACAGGTCC 57.245 50.000 0.00 0.00 39.02 4.46
2524 2712 1.276989 TGTCGTATCCAAACAGGTCCC 59.723 52.381 0.00 0.00 39.02 4.46
2525 2713 1.553704 GTCGTATCCAAACAGGTCCCT 59.446 52.381 0.00 0.00 39.02 4.20
2526 2714 1.829222 TCGTATCCAAACAGGTCCCTC 59.171 52.381 0.00 0.00 39.02 4.30
2527 2715 1.553248 CGTATCCAAACAGGTCCCTCA 59.447 52.381 0.00 0.00 39.02 3.86
2528 2716 2.027561 CGTATCCAAACAGGTCCCTCAA 60.028 50.000 0.00 0.00 39.02 3.02
2529 2717 3.558321 CGTATCCAAACAGGTCCCTCAAA 60.558 47.826 0.00 0.00 39.02 2.69
2530 2718 3.611025 ATCCAAACAGGTCCCTCAAAA 57.389 42.857 0.00 0.00 39.02 2.44
2531 2719 3.390175 TCCAAACAGGTCCCTCAAAAA 57.610 42.857 0.00 0.00 39.02 1.94
2532 2720 3.922375 TCCAAACAGGTCCCTCAAAAAT 58.078 40.909 0.00 0.00 39.02 1.82
2533 2721 5.068215 TCCAAACAGGTCCCTCAAAAATA 57.932 39.130 0.00 0.00 39.02 1.40
2534 2722 5.650283 TCCAAACAGGTCCCTCAAAAATAT 58.350 37.500 0.00 0.00 39.02 1.28
2535 2723 6.795590 TCCAAACAGGTCCCTCAAAAATATA 58.204 36.000 0.00 0.00 39.02 0.86
2536 2724 6.661805 TCCAAACAGGTCCCTCAAAAATATAC 59.338 38.462 0.00 0.00 39.02 1.47
2537 2725 6.435904 CCAAACAGGTCCCTCAAAAATATACA 59.564 38.462 0.00 0.00 0.00 2.29
2538 2726 7.124147 CCAAACAGGTCCCTCAAAAATATACAT 59.876 37.037 0.00 0.00 0.00 2.29
2539 2727 9.184523 CAAACAGGTCCCTCAAAAATATACATA 57.815 33.333 0.00 0.00 0.00 2.29
2540 2728 9.936329 AAACAGGTCCCTCAAAAATATACATAT 57.064 29.630 0.00 0.00 0.00 1.78
2541 2729 9.574516 AACAGGTCCCTCAAAAATATACATATC 57.425 33.333 0.00 0.00 0.00 1.63
2542 2730 8.949421 ACAGGTCCCTCAAAAATATACATATCT 58.051 33.333 0.00 0.00 0.00 1.98
2543 2731 9.224267 CAGGTCCCTCAAAAATATACATATCTG 57.776 37.037 0.00 0.00 0.00 2.90
2544 2732 7.885399 AGGTCCCTCAAAAATATACATATCTGC 59.115 37.037 0.00 0.00 0.00 4.26
2545 2733 7.885399 GGTCCCTCAAAAATATACATATCTGCT 59.115 37.037 0.00 0.00 0.00 4.24
2546 2734 9.289782 GTCCCTCAAAAATATACATATCTGCTT 57.710 33.333 0.00 0.00 0.00 3.91
2547 2735 9.866655 TCCCTCAAAAATATACATATCTGCTTT 57.133 29.630 0.00 0.00 0.00 3.51
2548 2736 9.903682 CCCTCAAAAATATACATATCTGCTTTG 57.096 33.333 0.00 0.00 0.00 2.77
2549 2737 9.903682 CCTCAAAAATATACATATCTGCTTTGG 57.096 33.333 0.00 0.00 0.00 3.28
2550 2738 9.903682 CTCAAAAATATACATATCTGCTTTGGG 57.096 33.333 0.00 0.00 0.00 4.12
2551 2739 8.859090 TCAAAAATATACATATCTGCTTTGGGG 58.141 33.333 0.00 0.00 0.00 4.96
2552 2740 8.641541 CAAAAATATACATATCTGCTTTGGGGT 58.358 33.333 0.00 0.00 0.00 4.95
2553 2741 8.409358 AAAATATACATATCTGCTTTGGGGTC 57.591 34.615 0.00 0.00 0.00 4.46
2554 2742 6.702449 ATATACATATCTGCTTTGGGGTCA 57.298 37.500 0.00 0.00 0.00 4.02
2555 2743 3.287867 ACATATCTGCTTTGGGGTCAG 57.712 47.619 0.00 0.00 0.00 3.51
2556 2744 1.952296 CATATCTGCTTTGGGGTCAGC 59.048 52.381 0.00 0.00 36.49 4.26
2557 2745 0.107703 TATCTGCTTTGGGGTCAGCG 60.108 55.000 0.00 0.00 39.04 5.18
2558 2746 2.129555 ATCTGCTTTGGGGTCAGCGT 62.130 55.000 0.00 0.00 39.04 5.07
2559 2747 1.898574 CTGCTTTGGGGTCAGCGTT 60.899 57.895 0.00 0.00 39.04 4.84
2560 2748 2.133742 CTGCTTTGGGGTCAGCGTTG 62.134 60.000 0.00 0.00 39.04 4.10
2561 2749 1.896660 GCTTTGGGGTCAGCGTTGA 60.897 57.895 0.00 0.00 0.00 3.18
2562 2750 1.452145 GCTTTGGGGTCAGCGTTGAA 61.452 55.000 2.60 0.00 34.49 2.69
2563 2751 0.593128 CTTTGGGGTCAGCGTTGAAG 59.407 55.000 2.60 0.00 34.49 3.02
2564 2752 0.181587 TTTGGGGTCAGCGTTGAAGA 59.818 50.000 2.60 0.00 34.49 2.87
2565 2753 0.400213 TTGGGGTCAGCGTTGAAGAT 59.600 50.000 2.60 0.00 34.49 2.40
2566 2754 0.321564 TGGGGTCAGCGTTGAAGATG 60.322 55.000 2.60 0.00 34.49 2.90
2567 2755 1.648467 GGGGTCAGCGTTGAAGATGC 61.648 60.000 2.60 0.00 40.73 3.91
2568 2756 1.648467 GGGTCAGCGTTGAAGATGCC 61.648 60.000 2.60 0.00 41.38 4.40
2569 2757 1.648467 GGTCAGCGTTGAAGATGCCC 61.648 60.000 2.60 0.00 41.38 5.36
2570 2758 0.674895 GTCAGCGTTGAAGATGCCCT 60.675 55.000 2.60 0.00 41.38 5.19
2571 2759 0.036732 TCAGCGTTGAAGATGCCCTT 59.963 50.000 0.00 0.00 41.38 3.95
2572 2760 1.277842 TCAGCGTTGAAGATGCCCTTA 59.722 47.619 0.00 0.00 41.38 2.69
2573 2761 1.667724 CAGCGTTGAAGATGCCCTTAG 59.332 52.381 0.00 0.00 41.38 2.18
2574 2762 1.555075 AGCGTTGAAGATGCCCTTAGA 59.445 47.619 0.00 0.00 41.38 2.10
2575 2763 1.666189 GCGTTGAAGATGCCCTTAGAC 59.334 52.381 0.00 0.00 34.68 2.59
2576 2764 2.935238 GCGTTGAAGATGCCCTTAGACA 60.935 50.000 0.00 0.00 34.68 3.41
2577 2765 3.334691 CGTTGAAGATGCCCTTAGACAA 58.665 45.455 0.00 0.00 34.68 3.18
2578 2766 3.941483 CGTTGAAGATGCCCTTAGACAAT 59.059 43.478 0.00 0.00 34.68 2.71
2579 2767 4.396166 CGTTGAAGATGCCCTTAGACAATT 59.604 41.667 0.00 0.00 34.68 2.32
2580 2768 5.584649 CGTTGAAGATGCCCTTAGACAATTA 59.415 40.000 0.00 0.00 34.68 1.40
2581 2769 6.238211 CGTTGAAGATGCCCTTAGACAATTAG 60.238 42.308 0.00 0.00 34.68 1.73
2582 2770 5.126067 TGAAGATGCCCTTAGACAATTAGC 58.874 41.667 0.00 0.00 34.68 3.09
2583 2771 4.092116 AGATGCCCTTAGACAATTAGCC 57.908 45.455 0.00 0.00 0.00 3.93
2584 2772 3.718956 AGATGCCCTTAGACAATTAGCCT 59.281 43.478 0.00 0.00 0.00 4.58
2585 2773 4.166919 AGATGCCCTTAGACAATTAGCCTT 59.833 41.667 0.00 0.00 0.00 4.35
2586 2774 5.369699 AGATGCCCTTAGACAATTAGCCTTA 59.630 40.000 0.00 0.00 0.00 2.69
2587 2775 5.036117 TGCCCTTAGACAATTAGCCTTAG 57.964 43.478 0.00 0.00 0.00 2.18
2588 2776 4.719773 TGCCCTTAGACAATTAGCCTTAGA 59.280 41.667 0.00 0.00 0.00 2.10
2589 2777 5.369699 TGCCCTTAGACAATTAGCCTTAGAT 59.630 40.000 0.00 0.00 0.00 1.98
2590 2778 5.703130 GCCCTTAGACAATTAGCCTTAGATG 59.297 44.000 0.00 0.00 0.00 2.90
2591 2779 5.703130 CCCTTAGACAATTAGCCTTAGATGC 59.297 44.000 0.00 0.00 0.00 3.91
2592 2780 6.291377 CCTTAGACAATTAGCCTTAGATGCA 58.709 40.000 0.00 0.00 0.00 3.96
2593 2781 6.203723 CCTTAGACAATTAGCCTTAGATGCAC 59.796 42.308 0.00 0.00 0.00 4.57
2594 2782 5.102953 AGACAATTAGCCTTAGATGCACA 57.897 39.130 0.00 0.00 0.00 4.57
2595 2783 5.121811 AGACAATTAGCCTTAGATGCACAG 58.878 41.667 0.00 0.00 0.00 3.66
2596 2784 4.848357 ACAATTAGCCTTAGATGCACAGT 58.152 39.130 0.00 0.00 0.00 3.55
2597 2785 4.637534 ACAATTAGCCTTAGATGCACAGTG 59.362 41.667 0.00 0.00 0.00 3.66
2598 2786 3.981071 TTAGCCTTAGATGCACAGTGT 57.019 42.857 1.61 0.00 0.00 3.55
2599 2787 5.614324 ATTAGCCTTAGATGCACAGTGTA 57.386 39.130 1.61 0.00 0.00 2.90
2600 2788 3.981071 AGCCTTAGATGCACAGTGTAA 57.019 42.857 1.61 0.00 0.00 2.41
2601 2789 4.286297 AGCCTTAGATGCACAGTGTAAA 57.714 40.909 1.61 0.00 0.00 2.01
2602 2790 4.848357 AGCCTTAGATGCACAGTGTAAAT 58.152 39.130 1.61 0.00 0.00 1.40
2603 2791 5.256474 AGCCTTAGATGCACAGTGTAAATT 58.744 37.500 1.61 0.00 0.00 1.82
2604 2792 6.414732 AGCCTTAGATGCACAGTGTAAATTA 58.585 36.000 1.61 0.00 0.00 1.40
2605 2793 7.056635 AGCCTTAGATGCACAGTGTAAATTAT 58.943 34.615 1.61 0.00 0.00 1.28
2606 2794 7.557719 AGCCTTAGATGCACAGTGTAAATTATT 59.442 33.333 1.61 0.00 0.00 1.40
2607 2795 8.190784 GCCTTAGATGCACAGTGTAAATTATTT 58.809 33.333 1.61 0.00 0.00 1.40
2608 2796 9.507280 CCTTAGATGCACAGTGTAAATTATTTG 57.493 33.333 1.61 0.00 0.00 2.32
2609 2797 8.909708 TTAGATGCACAGTGTAAATTATTTGC 57.090 30.769 1.61 0.00 0.00 3.68
2610 2798 6.029607 AGATGCACAGTGTAAATTATTTGCG 58.970 36.000 1.61 0.00 0.00 4.85
2611 2799 3.917380 TGCACAGTGTAAATTATTTGCGC 59.083 39.130 10.52 10.52 36.24 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.447833 CAATTGATTCCTTTTGATTTGACCATG 58.552 33.333 0.00 0.00 0.00 3.66
9 10 8.158789 ACAATTGATTCCTTTTGATTTGACCAT 58.841 29.630 13.59 0.00 0.00 3.55
12 13 8.706035 CAGACAATTGATTCCTTTTGATTTGAC 58.294 33.333 13.59 0.00 0.00 3.18
25 26 8.087750 TGGTTATTTTGGTCAGACAATTGATTC 58.912 33.333 13.59 0.00 0.00 2.52
28 29 6.968263 TGGTTATTTTGGTCAGACAATTGA 57.032 33.333 13.59 0.00 0.00 2.57
185 187 7.009174 CGTGAACAAACAATTAAAAACAGAGCT 59.991 33.333 0.00 0.00 0.00 4.09
205 207 4.559643 CACAAACCCTAACAAAACGTGAAC 59.440 41.667 0.00 0.00 0.00 3.18
237 243 1.737008 GTCGCCGTCTTGTCTTCCC 60.737 63.158 0.00 0.00 0.00 3.97
286 292 1.706866 CATCAGGATGGGGGATAAGCA 59.293 52.381 1.25 0.00 36.16 3.91
476 509 3.322828 TGTTGTAGTAGACAGTGGGGAAC 59.677 47.826 0.00 0.00 39.88 3.62
482 515 5.116680 GCTAAACGTGTTGTAGTAGACAGTG 59.883 44.000 0.00 0.00 39.88 3.66
518 551 0.034670 GCTGTCATTGCTCCTCCCTT 60.035 55.000 0.00 0.00 0.00 3.95
682 723 1.954382 GAGCTCGTTTGGGTCCTTTTT 59.046 47.619 0.00 0.00 0.00 1.94
846 896 3.429547 GCGCTAGGTCTGAGATTTCTTGA 60.430 47.826 0.00 0.00 0.00 3.02
863 913 2.186532 TGTATGTTTGGTTGGCGCTA 57.813 45.000 7.64 0.00 0.00 4.26
864 914 1.323412 TTGTATGTTTGGTTGGCGCT 58.677 45.000 7.64 0.00 0.00 5.92
868 918 6.237701 CGTTTCTTGTTTGTATGTTTGGTTGG 60.238 38.462 0.00 0.00 0.00 3.77
869 919 6.309251 ACGTTTCTTGTTTGTATGTTTGGTTG 59.691 34.615 0.00 0.00 0.00 3.77
870 920 6.391537 ACGTTTCTTGTTTGTATGTTTGGTT 58.608 32.000 0.00 0.00 0.00 3.67
871 921 5.956642 ACGTTTCTTGTTTGTATGTTTGGT 58.043 33.333 0.00 0.00 0.00 3.67
922 972 2.943345 CTGGTTGTGCTGCGTCGAC 61.943 63.158 5.18 5.18 0.00 4.20
957 1009 0.099968 TCGATCGCCTACTTTCGGTG 59.900 55.000 11.09 0.00 32.67 4.94
1536 1588 4.180946 CGGACCCTCGAGACGCAG 62.181 72.222 15.71 0.00 0.00 5.18
1539 1591 4.477975 GTGCGGACCCTCGAGACG 62.478 72.222 15.71 13.54 0.00 4.18
1540 1592 3.343788 CTGTGCGGACCCTCGAGAC 62.344 68.421 15.71 2.28 0.00 3.36
1541 1593 3.062466 CTGTGCGGACCCTCGAGA 61.062 66.667 15.71 0.00 0.00 4.04
1542 1594 4.135153 CCTGTGCGGACCCTCGAG 62.135 72.222 5.13 5.13 33.16 4.04
1560 1612 4.357279 AGTTGGAGCTGCTGGCCC 62.357 66.667 7.01 2.32 43.05 5.80
1561 1613 3.060615 CAGTTGGAGCTGCTGGCC 61.061 66.667 7.01 3.19 43.05 5.36
1695 1775 4.449068 AGCTTCAGAATGTAACTCACAACG 59.551 41.667 0.00 0.00 41.55 4.10
1727 1821 3.306156 GGAACTGGAACTGGTAGAGTCAC 60.306 52.174 0.00 0.00 31.73 3.67
1911 2026 2.690778 GGTCCGCGCTGAAAATGCT 61.691 57.895 5.56 0.00 0.00 3.79
1913 2028 1.586154 AAGGGTCCGCGCTGAAAATG 61.586 55.000 5.56 0.00 37.97 2.32
1916 2031 0.250381 TTTAAGGGTCCGCGCTGAAA 60.250 50.000 5.56 0.00 36.15 2.69
1918 2033 1.375013 GTTTAAGGGTCCGCGCTGA 60.375 57.895 5.56 0.00 37.97 4.26
1921 2036 3.493440 CGGTTTAAGGGTCCGCGC 61.493 66.667 0.00 0.00 37.90 6.86
1926 2041 3.208594 ACAGTTGAACGGTTTAAGGGTC 58.791 45.455 0.00 0.00 0.00 4.46
1932 2047 1.411977 TCCGGACAGTTGAACGGTTTA 59.588 47.619 0.00 0.00 46.06 2.01
1939 2054 1.111116 ACTCGGTCCGGACAGTTGAA 61.111 55.000 34.40 14.61 0.00 2.69
1945 2062 3.998672 GGCAACTCGGTCCGGACA 61.999 66.667 34.40 15.56 0.00 4.02
1946 2063 4.754667 GGGCAACTCGGTCCGGAC 62.755 72.222 27.04 27.04 0.00 4.79
1961 2078 1.312371 ATTGGATGGTTTGCGTCGGG 61.312 55.000 0.00 0.00 0.00 5.14
1986 2107 1.134640 CGGTCCATGGACAAATACGGA 60.135 52.381 38.83 2.59 46.20 4.69
2000 2121 4.651008 GACACGCGAACCGGTCCA 62.651 66.667 15.93 0.00 42.52 4.02
2012 2133 2.791383 TTTGCAGGAAAATGGACACG 57.209 45.000 0.00 0.00 0.00 4.49
2026 2147 0.609957 CACAGAGCCCCTGATTTGCA 60.610 55.000 10.30 0.00 45.78 4.08
2032 2153 0.613292 GACTCTCACAGAGCCCCTGA 60.613 60.000 10.30 0.00 46.12 3.86
2033 2154 1.612395 GGACTCTCACAGAGCCCCTG 61.612 65.000 0.18 2.49 46.12 4.45
2034 2155 1.305718 GGACTCTCACAGAGCCCCT 60.306 63.158 0.18 0.00 46.12 4.79
2041 2174 1.587054 GGTGTCCGGACTCTCACAG 59.413 63.158 33.39 0.00 33.17 3.66
2060 2193 1.134670 GGTGTCAGAGTCCTATGTGCC 60.135 57.143 0.00 0.00 0.00 5.01
2097 2231 3.081409 GGGCGGGCTCTACCTTGA 61.081 66.667 0.26 0.00 39.10 3.02
2099 2233 1.571773 AAATGGGCGGGCTCTACCTT 61.572 55.000 0.26 0.00 39.10 3.50
2103 2237 1.983119 CTCCAAATGGGCGGGCTCTA 61.983 60.000 0.26 0.00 36.21 2.43
2123 2257 3.254411 TGTCGCAAAAATAATGCAGACCA 59.746 39.130 15.38 6.41 44.01 4.02
2125 2259 4.089923 GGTTGTCGCAAAAATAATGCAGAC 59.910 41.667 12.89 12.89 44.01 3.51
2126 2260 4.022416 AGGTTGTCGCAAAAATAATGCAGA 60.022 37.500 0.00 0.00 44.01 4.26
2127 2261 4.236935 AGGTTGTCGCAAAAATAATGCAG 58.763 39.130 0.00 0.00 44.01 4.41
2130 2264 5.059404 AGGAGGTTGTCGCAAAAATAATG 57.941 39.130 0.00 0.00 0.00 1.90
2183 2327 3.589988 GAGTATTGATGTGGATAGCGGG 58.410 50.000 0.00 0.00 0.00 6.13
2196 2340 1.816224 GGCAAAAAGGGCGAGTATTGA 59.184 47.619 0.00 0.00 0.00 2.57
2213 2357 2.267642 GTCCATGTGGTAGCGGCA 59.732 61.111 1.45 0.00 36.34 5.69
2219 2363 2.162264 TCGTATGGGTCCATGTGGTA 57.838 50.000 12.42 0.00 37.82 3.25
2220 2364 1.281419 TTCGTATGGGTCCATGTGGT 58.719 50.000 12.42 0.00 37.82 4.16
2223 2367 2.026262 AGCTTTTCGTATGGGTCCATGT 60.026 45.455 12.42 0.00 37.82 3.21
2301 2445 2.436109 GGGCTTGCCTTGTCTCCA 59.564 61.111 11.71 0.00 0.00 3.86
2351 2496 0.389948 CTGCCCTTCTTTACGTCGCT 60.390 55.000 0.00 0.00 0.00 4.93
2418 2606 2.282180 TTTTGCTCCGGCCAGGAC 60.282 61.111 11.66 9.67 45.98 3.85
2434 2622 1.909986 GTAGAAGAAGGGAGGCTGGTT 59.090 52.381 0.00 0.00 0.00 3.67
2447 2635 0.454600 CTACTTGGCGGCGTAGAAGA 59.545 55.000 15.87 2.75 36.14 2.87
2492 2680 0.036388 ATACGACAAGTGCCTGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
2494 2682 0.249398 GGATACGACAAGTGCCTGGT 59.751 55.000 0.00 0.00 0.00 4.00
2495 2683 0.249120 TGGATACGACAAGTGCCTGG 59.751 55.000 0.00 0.00 42.51 4.45
2504 2692 1.276989 GGGACCTGTTTGGATACGACA 59.723 52.381 0.00 0.00 39.71 4.35
2506 2694 1.829222 GAGGGACCTGTTTGGATACGA 59.171 52.381 0.00 0.00 39.71 3.43
2512 2700 6.435904 TGTATATTTTTGAGGGACCTGTTTGG 59.564 38.462 0.00 0.00 42.93 3.28
2513 2701 7.461182 TGTATATTTTTGAGGGACCTGTTTG 57.539 36.000 0.00 0.00 0.00 2.93
2514 2702 9.936329 ATATGTATATTTTTGAGGGACCTGTTT 57.064 29.630 0.00 0.00 0.00 2.83
2515 2703 9.574516 GATATGTATATTTTTGAGGGACCTGTT 57.425 33.333 0.00 0.00 0.00 3.16
2516 2704 8.949421 AGATATGTATATTTTTGAGGGACCTGT 58.051 33.333 0.00 0.00 0.00 4.00
2517 2705 9.224267 CAGATATGTATATTTTTGAGGGACCTG 57.776 37.037 0.00 0.00 0.00 4.00
2518 2706 7.885399 GCAGATATGTATATTTTTGAGGGACCT 59.115 37.037 0.00 0.00 0.00 3.85
2519 2707 7.885399 AGCAGATATGTATATTTTTGAGGGACC 59.115 37.037 0.00 0.00 0.00 4.46
2520 2708 8.854614 AGCAGATATGTATATTTTTGAGGGAC 57.145 34.615 0.00 0.00 0.00 4.46
2521 2709 9.866655 AAAGCAGATATGTATATTTTTGAGGGA 57.133 29.630 0.00 0.00 0.00 4.20
2522 2710 9.903682 CAAAGCAGATATGTATATTTTTGAGGG 57.096 33.333 0.00 0.00 0.00 4.30
2523 2711 9.903682 CCAAAGCAGATATGTATATTTTTGAGG 57.096 33.333 0.00 0.00 0.00 3.86
2524 2712 9.903682 CCCAAAGCAGATATGTATATTTTTGAG 57.096 33.333 0.00 0.00 0.00 3.02
2525 2713 8.859090 CCCCAAAGCAGATATGTATATTTTTGA 58.141 33.333 0.00 0.00 0.00 2.69
2526 2714 8.641541 ACCCCAAAGCAGATATGTATATTTTTG 58.358 33.333 0.00 0.00 0.00 2.44
2527 2715 8.782137 ACCCCAAAGCAGATATGTATATTTTT 57.218 30.769 0.00 0.00 0.00 1.94
2528 2716 8.004215 TGACCCCAAAGCAGATATGTATATTTT 58.996 33.333 0.00 0.00 0.00 1.82
2529 2717 7.526041 TGACCCCAAAGCAGATATGTATATTT 58.474 34.615 0.00 0.00 0.00 1.40
2530 2718 7.090319 TGACCCCAAAGCAGATATGTATATT 57.910 36.000 0.00 0.00 0.00 1.28
2531 2719 6.702449 TGACCCCAAAGCAGATATGTATAT 57.298 37.500 0.00 0.00 0.00 0.86
2532 2720 5.513094 GCTGACCCCAAAGCAGATATGTATA 60.513 44.000 0.00 0.00 39.31 1.47
2533 2721 4.747931 GCTGACCCCAAAGCAGATATGTAT 60.748 45.833 0.00 0.00 39.31 2.29
2534 2722 3.433598 GCTGACCCCAAAGCAGATATGTA 60.434 47.826 0.00 0.00 39.31 2.29
2535 2723 2.684927 GCTGACCCCAAAGCAGATATGT 60.685 50.000 0.00 0.00 39.31 2.29
2536 2724 1.952296 GCTGACCCCAAAGCAGATATG 59.048 52.381 0.00 0.00 39.31 1.78
2537 2725 1.475751 CGCTGACCCCAAAGCAGATAT 60.476 52.381 0.00 0.00 39.47 1.63
2538 2726 0.107703 CGCTGACCCCAAAGCAGATA 60.108 55.000 0.00 0.00 39.47 1.98
2539 2727 1.377725 CGCTGACCCCAAAGCAGAT 60.378 57.895 0.00 0.00 39.47 2.90
2540 2728 2.032528 CGCTGACCCCAAAGCAGA 59.967 61.111 0.00 0.00 39.47 4.26
2541 2729 1.898574 AACGCTGACCCCAAAGCAG 60.899 57.895 0.00 0.00 39.47 4.24
2542 2730 2.192861 CAACGCTGACCCCAAAGCA 61.193 57.895 0.00 0.00 39.47 3.91
2543 2731 1.452145 TTCAACGCTGACCCCAAAGC 61.452 55.000 0.00 0.00 36.03 3.51
2544 2732 0.593128 CTTCAACGCTGACCCCAAAG 59.407 55.000 0.00 0.00 0.00 2.77
2545 2733 0.181587 TCTTCAACGCTGACCCCAAA 59.818 50.000 0.00 0.00 0.00 3.28
2546 2734 0.400213 ATCTTCAACGCTGACCCCAA 59.600 50.000 0.00 0.00 0.00 4.12
2547 2735 0.321564 CATCTTCAACGCTGACCCCA 60.322 55.000 0.00 0.00 0.00 4.96
2548 2736 1.648467 GCATCTTCAACGCTGACCCC 61.648 60.000 0.00 0.00 0.00 4.95
2549 2737 1.648467 GGCATCTTCAACGCTGACCC 61.648 60.000 0.00 0.00 0.00 4.46
2550 2738 1.648467 GGGCATCTTCAACGCTGACC 61.648 60.000 0.00 0.00 0.00 4.02
2551 2739 0.674895 AGGGCATCTTCAACGCTGAC 60.675 55.000 0.00 0.00 0.00 3.51
2552 2740 0.036732 AAGGGCATCTTCAACGCTGA 59.963 50.000 0.00 0.00 0.00 4.26
2553 2741 1.667724 CTAAGGGCATCTTCAACGCTG 59.332 52.381 0.00 0.00 36.93 5.18
2554 2742 1.555075 TCTAAGGGCATCTTCAACGCT 59.445 47.619 0.00 0.00 36.93 5.07
2555 2743 1.666189 GTCTAAGGGCATCTTCAACGC 59.334 52.381 0.00 0.00 36.93 4.84
2556 2744 2.972625 TGTCTAAGGGCATCTTCAACG 58.027 47.619 0.00 0.00 36.93 4.10
2557 2745 5.904362 AATTGTCTAAGGGCATCTTCAAC 57.096 39.130 0.00 0.00 36.93 3.18
2558 2746 5.590259 GCTAATTGTCTAAGGGCATCTTCAA 59.410 40.000 0.00 0.00 36.93 2.69
2559 2747 5.126067 GCTAATTGTCTAAGGGCATCTTCA 58.874 41.667 0.00 0.00 36.93 3.02
2560 2748 4.517075 GGCTAATTGTCTAAGGGCATCTTC 59.483 45.833 0.00 0.00 36.93 2.87
2561 2749 4.166919 AGGCTAATTGTCTAAGGGCATCTT 59.833 41.667 0.00 0.00 39.40 2.40
2562 2750 3.718956 AGGCTAATTGTCTAAGGGCATCT 59.281 43.478 0.00 0.00 0.00 2.90
2563 2751 4.092116 AGGCTAATTGTCTAAGGGCATC 57.908 45.455 0.00 0.00 0.00 3.91
2564 2752 4.526438 AAGGCTAATTGTCTAAGGGCAT 57.474 40.909 0.00 0.00 0.00 4.40
2565 2753 4.719773 TCTAAGGCTAATTGTCTAAGGGCA 59.280 41.667 0.00 0.00 0.00 5.36
2566 2754 5.291905 TCTAAGGCTAATTGTCTAAGGGC 57.708 43.478 0.00 0.00 0.00 5.19
2567 2755 5.703130 GCATCTAAGGCTAATTGTCTAAGGG 59.297 44.000 0.00 0.00 0.00 3.95
2568 2756 6.203723 GTGCATCTAAGGCTAATTGTCTAAGG 59.796 42.308 0.00 0.00 0.00 2.69
2569 2757 6.763135 TGTGCATCTAAGGCTAATTGTCTAAG 59.237 38.462 0.00 0.00 0.00 2.18
2570 2758 6.649155 TGTGCATCTAAGGCTAATTGTCTAA 58.351 36.000 0.00 0.00 0.00 2.10
2571 2759 6.127054 ACTGTGCATCTAAGGCTAATTGTCTA 60.127 38.462 0.00 0.00 0.00 2.59
2572 2760 5.102953 TGTGCATCTAAGGCTAATTGTCT 57.897 39.130 0.00 0.00 0.00 3.41
2573 2761 4.878397 ACTGTGCATCTAAGGCTAATTGTC 59.122 41.667 0.00 0.00 0.00 3.18
2574 2762 4.637534 CACTGTGCATCTAAGGCTAATTGT 59.362 41.667 0.00 0.00 0.00 2.71
2575 2763 4.637534 ACACTGTGCATCTAAGGCTAATTG 59.362 41.667 7.90 0.00 0.00 2.32
2576 2764 4.848357 ACACTGTGCATCTAAGGCTAATT 58.152 39.130 7.90 0.00 0.00 1.40
2577 2765 4.494091 ACACTGTGCATCTAAGGCTAAT 57.506 40.909 7.90 0.00 0.00 1.73
2578 2766 3.981071 ACACTGTGCATCTAAGGCTAA 57.019 42.857 7.90 0.00 0.00 3.09
2579 2767 5.414789 TTTACACTGTGCATCTAAGGCTA 57.585 39.130 7.90 0.00 0.00 3.93
2580 2768 3.981071 TTACACTGTGCATCTAAGGCT 57.019 42.857 7.90 0.00 0.00 4.58
2581 2769 5.567138 AATTTACACTGTGCATCTAAGGC 57.433 39.130 7.90 0.00 0.00 4.35
2582 2770 9.507280 CAAATAATTTACACTGTGCATCTAAGG 57.493 33.333 7.90 0.00 0.00 2.69
2583 2771 9.013490 GCAAATAATTTACACTGTGCATCTAAG 57.987 33.333 7.90 0.00 0.00 2.18
2584 2772 7.696035 CGCAAATAATTTACACTGTGCATCTAA 59.304 33.333 7.90 0.00 0.00 2.10
2585 2773 7.186128 CGCAAATAATTTACACTGTGCATCTA 58.814 34.615 7.90 0.00 0.00 1.98
2586 2774 6.029607 CGCAAATAATTTACACTGTGCATCT 58.970 36.000 7.90 0.00 0.00 2.90
2587 2775 5.275881 GCGCAAATAATTTACACTGTGCATC 60.276 40.000 7.90 0.00 39.47 3.91
2588 2776 4.562394 GCGCAAATAATTTACACTGTGCAT 59.438 37.500 7.90 0.00 39.47 3.96
2589 2777 3.917380 GCGCAAATAATTTACACTGTGCA 59.083 39.130 7.90 0.00 39.47 4.57
2590 2778 4.483977 GCGCAAATAATTTACACTGTGC 57.516 40.909 7.90 0.00 33.71 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.