Multiple sequence alignment - TraesCS2B01G243600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G243600 chr2B 100.000 8973 0 0 1 8973 247926256 247917284 0.000000e+00 16571.0
1 TraesCS2B01G243600 chr2B 98.106 264 5 0 6418 6681 367585410 367585673 2.280000e-125 460.0
2 TraesCS2B01G243600 chr2B 95.370 216 7 3 3035 3247 363923316 363923101 3.100000e-89 340.0
3 TraesCS2B01G243600 chr2B 92.814 167 12 0 6667 6833 594837194 594837028 9.000000e-60 243.0
4 TraesCS2B01G243600 chr2D 95.637 3255 66 17 3222 6435 192749166 192752385 0.000000e+00 5155.0
5 TraesCS2B01G243600 chr2D 95.456 3059 82 21 1 3037 192746151 192749174 0.000000e+00 4826.0
6 TraesCS2B01G243600 chr2D 94.863 1674 58 9 6674 8345 192752726 192754373 0.000000e+00 2590.0
7 TraesCS2B01G243600 chr2D 91.167 317 20 4 8655 8965 192756730 192757044 2.990000e-114 424.0
8 TraesCS2B01G243600 chr2D 81.620 321 14 21 8339 8622 192756418 192756730 3.260000e-54 224.0
9 TraesCS2B01G243600 chr2D 80.476 210 20 10 2293 2492 648384189 648384387 3.380000e-29 141.0
10 TraesCS2B01G243600 chr2A 94.584 3065 93 25 1 3037 205209930 205206911 0.000000e+00 4673.0
11 TraesCS2B01G243600 chr2A 93.186 1952 63 17 3864 5780 205205183 205203267 0.000000e+00 2804.0
12 TraesCS2B01G243600 chr2A 93.860 1596 54 15 6824 8411 205202103 205200544 0.000000e+00 2364.0
13 TraesCS2B01G243600 chr2A 98.014 554 10 1 5773 6326 205202794 205202242 0.000000e+00 961.0
14 TraesCS2B01G243600 chr2A 92.571 673 29 4 3222 3873 205206919 205206247 0.000000e+00 946.0
15 TraesCS2B01G243600 chr2A 85.009 587 48 13 8410 8973 205191471 205190902 2.190000e-155 560.0
16 TraesCS2B01G243600 chr2A 100.000 185 0 0 3038 3222 615351970 615351786 8.630000e-90 342.0
17 TraesCS2B01G243600 chr2A 95.541 157 7 0 6669 6825 688640989 688640833 1.500000e-62 252.0
18 TraesCS2B01G243600 chr2A 95.789 95 2 2 6328 6422 205202194 205202102 1.560000e-32 152.0
19 TraesCS2B01G243600 chr5B 80.431 1114 135 38 6891 7978 54196742 54197798 0.000000e+00 773.0
20 TraesCS2B01G243600 chr5B 79.713 1114 162 33 6889 7981 54392613 54393683 0.000000e+00 747.0
21 TraesCS2B01G243600 chr5B 78.648 932 150 35 5416 6321 54195468 54196376 2.810000e-159 573.0
22 TraesCS2B01G243600 chr5B 77.496 711 117 30 1794 2490 54194017 54194698 3.930000e-103 387.0
23 TraesCS2B01G243600 chr5B 100.000 187 0 0 3036 3222 282048284 282048098 6.670000e-91 346.0
24 TraesCS2B01G243600 chr5B 85.256 156 19 4 8810 8962 436746990 436746836 3.350000e-34 158.0
25 TraesCS2B01G243600 chr5B 79.894 189 24 9 4879 5057 54195034 54195218 9.460000e-25 126.0
26 TraesCS2B01G243600 chr5D 79.103 1115 167 34 6889 7981 51245788 51246858 0.000000e+00 708.0
27 TraesCS2B01G243600 chr5D 78.706 1113 173 32 6890 7981 51322399 51323468 0.000000e+00 684.0
28 TraesCS2B01G243600 chr5D 83.671 741 83 14 6891 7621 50978644 50979356 0.000000e+00 664.0
29 TraesCS2B01G243600 chr5D 82.163 527 60 22 2052 2562 50974930 50975438 1.080000e-113 422.0
30 TraesCS2B01G243600 chr5D 83.395 271 39 4 5132 5399 50975811 50976078 6.960000e-61 246.0
31 TraesCS2B01G243600 chr5D 87.578 161 20 0 8810 8970 240854812 240854972 4.280000e-43 187.0
32 TraesCS2B01G243600 chr5D 87.662 154 18 1 8810 8962 98807573 98807420 2.570000e-40 178.0
33 TraesCS2B01G243600 chr6D 78.750 880 119 32 6934 7805 41603686 41604505 2.220000e-145 527.0
34 TraesCS2B01G243600 chr6D 82.011 567 76 18 5456 6009 56126314 56125761 8.210000e-125 459.0
35 TraesCS2B01G243600 chr6D 79.798 594 94 18 5422 6006 41602049 41602625 8.390000e-110 409.0
36 TraesCS2B01G243600 chr6D 98.000 150 3 0 6680 6829 243033035 243032886 2.480000e-65 261.0
37 TraesCS2B01G243600 chr6D 86.700 203 21 5 2289 2490 41600733 41600930 4.220000e-53 220.0
38 TraesCS2B01G243600 chr6D 92.248 129 8 2 8835 8962 143975293 143975420 1.990000e-41 182.0
39 TraesCS2B01G243600 chr6B 82.199 573 76 18 5450 6009 126312854 126312295 3.790000e-128 470.0
40 TraesCS2B01G243600 chr6B 97.719 263 6 0 6420 6682 4357364 4357626 3.820000e-123 453.0
41 TraesCS2B01G243600 chr6B 79.362 533 79 23 5422 5939 95563349 95562833 6.670000e-91 346.0
42 TraesCS2B01G243600 chr6B 81.492 362 52 7 1265 1617 95566760 95566405 5.300000e-72 283.0
43 TraesCS2B01G243600 chr6B 91.304 184 14 2 6648 6830 290666322 290666140 5.380000e-62 250.0
44 TraesCS2B01G243600 chr6B 90.761 184 15 2 6648 6830 290606089 290605907 2.500000e-60 244.0
45 TraesCS2B01G243600 chr6B 89.674 184 17 2 6648 6830 290638483 290638301 5.420000e-57 233.0
46 TraesCS2B01G243600 chr6B 86.364 154 20 1 8810 8962 51309272 51309119 5.570000e-37 167.0
47 TraesCS2B01G243600 chr6B 100.000 28 0 0 4539 4566 142231058 142231085 1.600000e-02 52.8
48 TraesCS2B01G243600 chrUn 97.719 263 6 0 6420 6682 199053237 199052975 3.820000e-123 453.0
49 TraesCS2B01G243600 chrUn 97.719 263 6 0 6420 6682 381236043 381236305 3.820000e-123 453.0
50 TraesCS2B01G243600 chrUn 97.719 263 6 0 6420 6682 383354862 383355124 3.820000e-123 453.0
51 TraesCS2B01G243600 chrUn 99.474 190 1 0 3033 3222 5429821 5429632 6.670000e-91 346.0
52 TraesCS2B01G243600 chrUn 82.547 212 17 11 2291 2492 30967879 30967678 1.550000e-37 169.0
53 TraesCS2B01G243600 chr1B 97.318 261 7 0 6421 6681 4324479 4324739 2.300000e-120 444.0
54 TraesCS2B01G243600 chr4B 96.970 264 7 1 6420 6683 270499988 270500250 8.270000e-120 442.0
55 TraesCS2B01G243600 chr4B 95.000 280 14 0 6411 6690 650762432 650762711 2.970000e-119 440.0
56 TraesCS2B01G243600 chr4B 100.000 186 0 0 3038 3223 54028600 54028415 2.400000e-90 344.0
57 TraesCS2B01G243600 chr7A 94.056 286 14 3 6420 6704 250515470 250515753 1.790000e-116 431.0
58 TraesCS2B01G243600 chr7A 99.474 190 0 1 3034 3222 173706956 173707145 2.400000e-90 344.0
59 TraesCS2B01G243600 chr7A 85.057 261 36 2 6569 6826 431992994 431992734 6.910000e-66 263.0
60 TraesCS2B01G243600 chr6A 80.855 538 70 19 6939 7470 52155672 52156182 8.450000e-105 392.0
61 TraesCS2B01G243600 chr6A 84.290 331 46 4 5678 6006 52154351 52154677 1.450000e-82 318.0
62 TraesCS2B01G243600 chr6A 87.059 255 24 4 1264 1509 52151245 52151499 6.860000e-71 279.0
63 TraesCS2B01G243600 chr6A 84.653 202 24 6 2290 2490 52152155 52152350 2.560000e-45 195.0
64 TraesCS2B01G243600 chr6A 86.928 153 18 2 8811 8962 479228478 479228629 4.310000e-38 171.0
65 TraesCS2B01G243600 chr6A 88.971 136 12 3 8832 8965 466480870 466480736 2.000000e-36 165.0
66 TraesCS2B01G243600 chr6A 85.256 156 21 2 7466 7620 52169691 52169845 9.320000e-35 159.0
67 TraesCS2B01G243600 chr3B 99.471 189 1 0 3038 3226 43716382 43716570 2.400000e-90 344.0
68 TraesCS2B01G243600 chr3B 100.000 186 0 0 3037 3222 756675184 756675369 2.400000e-90 344.0
69 TraesCS2B01G243600 chr3A 99.471 189 0 1 3034 3222 625241734 625241547 8.630000e-90 342.0
70 TraesCS2B01G243600 chr5A 80.000 465 64 17 5642 6083 40471805 40472263 5.230000e-82 316.0
71 TraesCS2B01G243600 chr5A 89.071 183 16 4 5112 5292 40469668 40469848 3.260000e-54 224.0
72 TraesCS2B01G243600 chr5A 82.963 135 15 5 4878 5007 40469461 40469592 2.050000e-21 115.0
73 TraesCS2B01G243600 chr5A 76.617 201 38 5 5398 5597 40469885 40470077 1.590000e-17 102.0
74 TraesCS2B01G243600 chr4D 94.186 172 10 0 6657 6828 77835638 77835467 6.910000e-66 263.0
75 TraesCS2B01G243600 chr1D 87.013 154 19 1 8810 8962 299278829 299278982 1.200000e-38 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G243600 chr2B 247917284 247926256 8972 True 16571.000000 16571 100.000000 1 8973 1 chr2B.!!$R1 8972
1 TraesCS2B01G243600 chr2D 192746151 192757044 10893 False 2643.800000 5155 91.748600 1 8965 5 chr2D.!!$F2 8964
2 TraesCS2B01G243600 chr2A 205200544 205209930 9386 True 1983.333333 4673 94.667333 1 8411 6 chr2A.!!$R4 8410
3 TraesCS2B01G243600 chr2A 205190902 205191471 569 True 560.000000 560 85.009000 8410 8973 1 chr2A.!!$R1 563
4 TraesCS2B01G243600 chr5B 54392613 54393683 1070 False 747.000000 747 79.713000 6889 7981 1 chr5B.!!$F1 1092
5 TraesCS2B01G243600 chr5B 54194017 54197798 3781 False 464.750000 773 79.117250 1794 7978 4 chr5B.!!$F2 6184
6 TraesCS2B01G243600 chr5D 51245788 51246858 1070 False 708.000000 708 79.103000 6889 7981 1 chr5D.!!$F1 1092
7 TraesCS2B01G243600 chr5D 51322399 51323468 1069 False 684.000000 684 78.706000 6890 7981 1 chr5D.!!$F2 1091
8 TraesCS2B01G243600 chr5D 50974930 50979356 4426 False 444.000000 664 83.076333 2052 7621 3 chr5D.!!$F4 5569
9 TraesCS2B01G243600 chr6D 56125761 56126314 553 True 459.000000 459 82.011000 5456 6009 1 chr6D.!!$R1 553
10 TraesCS2B01G243600 chr6D 41600733 41604505 3772 False 385.333333 527 81.749333 2289 7805 3 chr6D.!!$F2 5516
11 TraesCS2B01G243600 chr6B 126312295 126312854 559 True 470.000000 470 82.199000 5450 6009 1 chr6B.!!$R2 559
12 TraesCS2B01G243600 chr6B 95562833 95566760 3927 True 314.500000 346 80.427000 1265 5939 2 chr6B.!!$R6 4674
13 TraesCS2B01G243600 chr6A 52151245 52156182 4937 False 296.000000 392 84.214250 1264 7470 4 chr6A.!!$F3 6206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 443 0.036765 AGATCGCGCCTGTAAAACCA 60.037 50.000 0.00 0.00 0.00 3.67 F
951 960 1.004277 TCCATACCCTTCCTTGCACAC 59.996 52.381 0.00 0.00 0.00 3.82 F
2429 4240 0.590682 CACATTAAGGTGTGCGCACA 59.409 50.000 37.86 37.86 46.95 4.57 F
3155 5052 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52 F
4060 7070 0.108233 CTCTGACAAGCTGCTCCTCC 60.108 60.000 1.00 0.00 0.00 4.30 F
4062 7072 0.673022 CTGACAAGCTGCTCCTCCAC 60.673 60.000 1.00 0.00 0.00 4.02 F
4065 7075 1.078567 CAAGCTGCTCCTCCACCTC 60.079 63.158 1.00 0.00 0.00 3.85 F
4066 7076 2.297129 AAGCTGCTCCTCCACCTCC 61.297 63.158 1.00 0.00 0.00 4.30 F
4637 7684 2.432563 CCCCCTTACGTGTGGCAA 59.567 61.111 0.00 0.00 0.00 4.52 F
6230 11161 0.657840 AGACTCGTGCTTTGCAACAC 59.342 50.000 0.00 4.17 41.47 3.32 F
6471 13035 0.030235 GGTTTCCGTGCAAGTCAACC 59.970 55.000 12.37 12.37 0.00 3.77 F
6472 13036 0.736053 GTTTCCGTGCAAGTCAACCA 59.264 50.000 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 2207 2.287248 GCATAGGCGAAAATGGAGAAGC 60.287 50.000 0.00 0.00 0.00 3.86 R
2587 4468 0.255890 GCCATCCACAGAGCCCTTAA 59.744 55.000 0.00 0.00 0.00 1.85 R
3970 6980 0.037232 GTAGTGCAGAAAGAGGCGGT 60.037 55.000 0.00 0.00 0.00 5.68 R
4374 7414 0.584876 CGTCTCGGTGTTTGGTTTCC 59.415 55.000 0.00 0.00 0.00 3.13 R
4861 7911 4.140686 GGGGATTAGGGATTTCTTTGGGAT 60.141 45.833 0.00 0.00 0.00 3.85 R
5826 10369 5.419542 CATAGTAGTACCTGCAGCAAGAAA 58.580 41.667 8.66 0.00 0.00 2.52 R
6079 10639 6.115446 TCATAACTTATTCAGCCACTTCTGG 58.885 40.000 0.00 0.00 41.13 3.86 R
6230 11161 3.366679 CCCATGTGAGCTTAACTTTGCTG 60.367 47.826 0.00 0.00 39.91 4.41 R
6452 13016 0.030235 GGTTGACTTGCACGGAAACC 59.970 55.000 11.74 11.74 0.00 3.27 R
7325 14015 1.202940 ACCTTTGGCCTTCACCTTCTC 60.203 52.381 3.32 0.00 0.00 2.87 R
7811 14540 1.523938 GCAATGTACTCCCCGGAGC 60.524 63.158 10.79 0.00 45.54 4.70 R
8385 17171 1.820090 CGGCAGGAAGGTGGGTTTAAA 60.820 52.381 0.00 0.00 0.00 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.126796 TGGAGATGTGTTGAATAGAATAGCCA 60.127 38.462 0.00 0.00 0.00 4.75
49 50 6.939163 GGAGATGTGTTGAATAGAATAGCCAT 59.061 38.462 0.00 0.00 0.00 4.40
180 184 4.124238 TCCTACACGAACTGAACCAAAAG 58.876 43.478 0.00 0.00 0.00 2.27
242 246 4.447138 ACACACCTTTCCACCAAATAGA 57.553 40.909 0.00 0.00 0.00 1.98
247 251 5.221441 ACACCTTTCCACCAAATAGAAAAGC 60.221 40.000 0.00 0.00 0.00 3.51
287 291 4.200092 CCCTTATCCTAAACCTTGCAGAC 58.800 47.826 0.00 0.00 0.00 3.51
362 368 6.853490 AGAAGGTAAAAGGATCAGAAAAGGT 58.147 36.000 0.00 0.00 0.00 3.50
437 443 0.036765 AGATCGCGCCTGTAAAACCA 60.037 50.000 0.00 0.00 0.00 3.67
478 484 7.601886 ACAATCTAGCTGGAATCGATAATCAAG 59.398 37.037 3.02 0.00 0.00 3.02
504 510 2.733542 CGAGATCGAGAAGCAAGCAAGA 60.734 50.000 0.00 0.00 43.02 3.02
527 534 3.026431 GCGGCAGGTGTTAGGGCTA 62.026 63.158 0.00 0.00 0.00 3.93
546 553 3.319689 GCTATTACAGGGTGAGACTCCTC 59.680 52.174 0.00 0.00 39.86 3.71
853 862 1.135402 GCCAAAGTGCCGGTCATTTAG 60.135 52.381 1.90 2.13 0.00 1.85
942 951 1.057471 GGCTACCCTCCATACCCTTC 58.943 60.000 0.00 0.00 0.00 3.46
943 952 1.057471 GCTACCCTCCATACCCTTCC 58.943 60.000 0.00 0.00 0.00 3.46
944 953 1.414685 GCTACCCTCCATACCCTTCCT 60.415 57.143 0.00 0.00 0.00 3.36
945 954 2.964803 GCTACCCTCCATACCCTTCCTT 60.965 54.545 0.00 0.00 0.00 3.36
951 960 1.004277 TCCATACCCTTCCTTGCACAC 59.996 52.381 0.00 0.00 0.00 3.82
1179 1188 2.732619 GGAGGGTAAGGAGCACGGG 61.733 68.421 0.00 0.00 0.00 5.28
1515 1533 3.268072 AGGGGGATGAAAAGGAGAAAGAG 59.732 47.826 0.00 0.00 0.00 2.85
1540 1567 3.214328 GAGAAAGTGAAGCTGGTCCAAA 58.786 45.455 0.00 0.00 0.00 3.28
1590 2076 4.978099 AGGATGAGCAAGTTGAAGAAGAA 58.022 39.130 7.16 0.00 0.00 2.52
1668 2169 5.764686 TCCCATCCAATTCTATGATGTTTCG 59.235 40.000 0.00 0.00 35.26 3.46
1705 2207 5.355071 TCTCTGCTATTGTAAAGGTTGCATG 59.645 40.000 0.00 0.00 0.00 4.06
1791 2297 5.107989 CGTCCTTATGTTGATACGTATGTGC 60.108 44.000 13.97 0.00 0.00 4.57
1815 2321 5.163488 CGATGTATGGTCTGGTTGGTAGTTA 60.163 44.000 0.00 0.00 0.00 2.24
1851 2361 4.970662 TGTGCTGCTTAATTCCATCTTC 57.029 40.909 0.00 0.00 0.00 2.87
2002 3805 5.605534 GTGGAGCTTATTGAGAGATGCTTA 58.394 41.667 0.00 0.00 28.88 3.09
2004 3807 6.368516 GTGGAGCTTATTGAGAGATGCTTATC 59.631 42.308 0.00 0.00 28.88 1.75
2008 3811 7.733969 AGCTTATTGAGAGATGCTTATCAGAA 58.266 34.615 0.00 0.00 0.00 3.02
2014 3817 6.939622 TGAGAGATGCTTATCAGAAACAGAA 58.060 36.000 0.00 0.00 0.00 3.02
2078 3881 2.422276 AGAACCATTTCAAACTGCGC 57.578 45.000 0.00 0.00 33.72 6.09
2429 4240 0.590682 CACATTAAGGTGTGCGCACA 59.409 50.000 37.86 37.86 46.95 4.57
2469 4285 7.855784 TTATCCTGATAAGTAATCCTCTGCA 57.144 36.000 0.00 0.00 33.22 4.41
2476 4292 8.034313 TGATAAGTAATCCTCTGCACCTAAAT 57.966 34.615 0.00 0.00 33.22 1.40
2530 4359 3.866449 GCTTGAGAATCCACCTCGAAAGT 60.866 47.826 0.00 0.00 33.51 2.66
2577 4440 9.593134 TTTCTTTTCAGCTTTTGTATTTGCTTA 57.407 25.926 0.00 0.00 33.03 3.09
2587 4468 9.639601 GCTTTTGTATTTGCTTAATAAACCTCT 57.360 29.630 0.00 0.00 30.70 3.69
2613 4494 2.760092 GGCTCTGTGGATGGCAATTTTA 59.240 45.455 0.00 0.00 0.00 1.52
2614 4495 3.195396 GGCTCTGTGGATGGCAATTTTAA 59.805 43.478 0.00 0.00 0.00 1.52
2778 4674 0.107116 ACACCCCAAAGTACAACGCA 60.107 50.000 0.00 0.00 0.00 5.24
3035 4932 5.116084 AGCCATTCAAGACTTGCCTAATA 57.884 39.130 10.50 0.00 0.00 0.98
3036 4933 4.884164 AGCCATTCAAGACTTGCCTAATAC 59.116 41.667 10.50 2.31 0.00 1.89
3037 4934 4.036852 GCCATTCAAGACTTGCCTAATACC 59.963 45.833 10.50 0.00 0.00 2.73
3038 4935 5.440610 CCATTCAAGACTTGCCTAATACCT 58.559 41.667 10.50 0.00 0.00 3.08
3039 4936 6.591935 CCATTCAAGACTTGCCTAATACCTA 58.408 40.000 10.50 0.00 0.00 3.08
3040 4937 7.227156 CCATTCAAGACTTGCCTAATACCTAT 58.773 38.462 10.50 0.00 0.00 2.57
3041 4938 7.173907 CCATTCAAGACTTGCCTAATACCTATG 59.826 40.741 10.50 2.06 0.00 2.23
3042 4939 6.808321 TCAAGACTTGCCTAATACCTATGT 57.192 37.500 10.50 0.00 0.00 2.29
3043 4940 7.195374 TCAAGACTTGCCTAATACCTATGTT 57.805 36.000 10.50 0.00 0.00 2.71
3044 4941 7.630082 TCAAGACTTGCCTAATACCTATGTTT 58.370 34.615 10.50 0.00 0.00 2.83
3045 4942 8.107095 TCAAGACTTGCCTAATACCTATGTTTT 58.893 33.333 10.50 0.00 0.00 2.43
3046 4943 8.739972 CAAGACTTGCCTAATACCTATGTTTTT 58.260 33.333 1.43 0.00 0.00 1.94
3047 4944 9.969001 AAGACTTGCCTAATACCTATGTTTTTA 57.031 29.630 0.00 0.00 0.00 1.52
3048 4945 9.969001 AGACTTGCCTAATACCTATGTTTTTAA 57.031 29.630 0.00 0.00 0.00 1.52
3050 4947 9.185680 ACTTGCCTAATACCTATGTTTTTAAGG 57.814 33.333 0.00 0.00 36.42 2.69
3051 4948 7.576861 TGCCTAATACCTATGTTTTTAAGGC 57.423 36.000 0.00 0.00 33.42 4.35
3052 4949 6.261381 TGCCTAATACCTATGTTTTTAAGGCG 59.739 38.462 0.00 0.00 38.85 5.52
3053 4950 6.293790 GCCTAATACCTATGTTTTTAAGGCGG 60.294 42.308 0.00 0.00 33.42 6.13
3054 4951 6.769341 CCTAATACCTATGTTTTTAAGGCGGT 59.231 38.462 0.00 0.00 33.42 5.68
3055 4952 7.933033 CCTAATACCTATGTTTTTAAGGCGGTA 59.067 37.037 0.00 0.00 33.42 4.02
3056 4953 9.328845 CTAATACCTATGTTTTTAAGGCGGTAA 57.671 33.333 0.00 0.00 33.42 2.85
3057 4954 7.797038 ATACCTATGTTTTTAAGGCGGTAAG 57.203 36.000 0.00 0.00 33.42 2.34
3058 4955 4.945543 ACCTATGTTTTTAAGGCGGTAAGG 59.054 41.667 0.00 0.00 33.42 2.69
3067 4964 3.196613 GGCGGTAAGGCGATCTAAG 57.803 57.895 0.00 0.00 35.04 2.18
3068 4965 0.319641 GGCGGTAAGGCGATCTAAGG 60.320 60.000 0.00 0.00 35.04 2.69
3069 4966 0.944788 GCGGTAAGGCGATCTAAGGC 60.945 60.000 0.00 0.00 0.00 4.35
3070 4967 0.663568 CGGTAAGGCGATCTAAGGCG 60.664 60.000 0.00 0.00 39.33 5.52
3076 4973 2.029666 CGATCTAAGGCGCTGGGG 59.970 66.667 7.64 0.00 0.00 4.96
3077 4974 2.427753 GATCTAAGGCGCTGGGGG 59.572 66.667 7.64 0.00 0.00 5.40
3149 5046 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
3150 5047 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
3151 5048 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
3152 5049 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
3153 5050 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
3154 5051 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
3155 5052 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
3156 5053 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
3157 5054 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
3158 5055 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
3159 5056 1.001378 GGCATATTTGTAAGGCGCTGG 60.001 52.381 7.64 0.00 0.00 4.85
3160 5057 1.600413 GCATATTTGTAAGGCGCTGGC 60.600 52.381 7.64 0.00 38.90 4.85
3161 5058 0.944386 ATATTTGTAAGGCGCTGGCG 59.056 50.000 7.64 10.80 41.24 5.69
3162 5059 1.092921 TATTTGTAAGGCGCTGGCGG 61.093 55.000 16.61 0.00 41.24 6.13
3191 5088 4.014065 GCCTAAGCGTCGCCTAAG 57.986 61.111 14.86 8.78 0.00 2.18
3192 5089 2.238437 GCCTAAGCGTCGCCTAAGC 61.238 63.158 14.86 7.18 0.00 3.09
3202 5099 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
3203 5100 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
3204 5101 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
3205 5102 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
3222 5119 1.199327 GGGACGCCTTAAAAACAGAGC 59.801 52.381 0.00 0.00 0.00 4.09
3223 5120 1.199327 GGACGCCTTAAAAACAGAGCC 59.801 52.381 0.00 0.00 0.00 4.70
3224 5121 2.152016 GACGCCTTAAAAACAGAGCCT 58.848 47.619 0.00 0.00 0.00 4.58
3225 5122 3.332034 GACGCCTTAAAAACAGAGCCTA 58.668 45.455 0.00 0.00 0.00 3.93
3226 5123 3.746940 ACGCCTTAAAAACAGAGCCTAA 58.253 40.909 0.00 0.00 0.00 2.69
3227 5124 4.332828 ACGCCTTAAAAACAGAGCCTAAT 58.667 39.130 0.00 0.00 0.00 1.73
3587 5524 2.203538 CCCCAACAAGCAGCCACT 60.204 61.111 0.00 0.00 0.00 4.00
3793 5730 2.796651 CAGCAAAGCCGCCATCTC 59.203 61.111 0.00 0.00 0.00 2.75
3966 6976 2.443390 ATTGCCATGCCAGCCTCC 60.443 61.111 0.00 0.00 0.00 4.30
3993 7003 1.608283 GCCTCTTTCTGCACTACGGTT 60.608 52.381 0.00 0.00 0.00 4.44
4048 7058 2.997315 CCCACCCGAGCTCTGACA 60.997 66.667 12.85 0.00 0.00 3.58
4049 7059 2.583441 CCCACCCGAGCTCTGACAA 61.583 63.158 12.85 0.00 0.00 3.18
4050 7060 1.079543 CCACCCGAGCTCTGACAAG 60.080 63.158 12.85 0.00 0.00 3.16
4051 7061 1.739562 CACCCGAGCTCTGACAAGC 60.740 63.158 12.85 2.52 42.82 4.01
4057 7067 3.887783 GCTCTGACAAGCTGCTCC 58.112 61.111 1.00 0.00 39.27 4.70
4058 7068 1.296068 GCTCTGACAAGCTGCTCCT 59.704 57.895 1.00 0.00 39.27 3.69
4059 7069 0.740516 GCTCTGACAAGCTGCTCCTC 60.741 60.000 1.00 0.81 39.27 3.71
4060 7070 0.108233 CTCTGACAAGCTGCTCCTCC 60.108 60.000 1.00 0.00 0.00 4.30
4061 7071 0.833409 TCTGACAAGCTGCTCCTCCA 60.833 55.000 1.00 0.00 0.00 3.86
4062 7072 0.673022 CTGACAAGCTGCTCCTCCAC 60.673 60.000 1.00 0.00 0.00 4.02
4063 7073 1.376553 GACAAGCTGCTCCTCCACC 60.377 63.158 1.00 0.00 0.00 4.61
4064 7074 1.835927 GACAAGCTGCTCCTCCACCT 61.836 60.000 1.00 0.00 0.00 4.00
4065 7075 1.078567 CAAGCTGCTCCTCCACCTC 60.079 63.158 1.00 0.00 0.00 3.85
4066 7076 2.297129 AAGCTGCTCCTCCACCTCC 61.297 63.158 1.00 0.00 0.00 4.30
4067 7077 3.005539 GCTGCTCCTCCACCTCCA 61.006 66.667 0.00 0.00 0.00 3.86
4068 7078 2.985456 CTGCTCCTCCACCTCCAC 59.015 66.667 0.00 0.00 0.00 4.02
4069 7079 2.607750 TGCTCCTCCACCTCCACC 60.608 66.667 0.00 0.00 0.00 4.61
4070 7080 2.607750 GCTCCTCCACCTCCACCA 60.608 66.667 0.00 0.00 0.00 4.17
4071 7081 2.960688 GCTCCTCCACCTCCACCAC 61.961 68.421 0.00 0.00 0.00 4.16
4072 7082 2.603473 TCCTCCACCTCCACCACG 60.603 66.667 0.00 0.00 0.00 4.94
4073 7083 4.394712 CCTCCACCTCCACCACGC 62.395 72.222 0.00 0.00 0.00 5.34
4074 7084 4.394712 CTCCACCTCCACCACGCC 62.395 72.222 0.00 0.00 0.00 5.68
4076 7086 4.033776 CCACCTCCACCACGCCAT 62.034 66.667 0.00 0.00 0.00 4.40
4311 7348 7.560262 TGATGCTTAGTACCAGTACTAGTTGAT 59.440 37.037 15.31 8.39 45.92 2.57
4372 7412 7.253422 ACTGTCAGCATTAGCATTGAATTTAC 58.747 34.615 0.00 0.00 45.49 2.01
4374 7414 7.252708 TGTCAGCATTAGCATTGAATTTACAG 58.747 34.615 0.00 0.00 45.49 2.74
4424 7464 7.393216 GTTCCATTCCATCTCATTAGCTCTAT 58.607 38.462 0.00 0.00 0.00 1.98
4498 7538 5.641789 AACACACCCTAGGTTTCTTTAGT 57.358 39.130 8.29 0.00 31.02 2.24
4609 7655 5.917541 AAGAACACGACGTAAACATGATT 57.082 34.783 0.00 0.00 0.00 2.57
4627 7674 2.930109 TTGCCAATTAAGCCCCCTTA 57.070 45.000 0.00 0.00 32.47 2.69
4637 7684 2.432563 CCCCCTTACGTGTGGCAA 59.567 61.111 0.00 0.00 0.00 4.52
4737 7786 2.683859 TAGAGGACGTCGTGCCACG 61.684 63.158 16.63 11.80 45.65 4.94
4783 7832 8.466617 AGGTTGAAGTACGATACATAGATTCT 57.533 34.615 0.00 0.00 0.00 2.40
4784 7833 8.353684 AGGTTGAAGTACGATACATAGATTCTG 58.646 37.037 0.00 0.00 0.00 3.02
4861 7911 8.100791 ACAGGTGAAATATCTAGCAGTAAAACA 58.899 33.333 0.00 0.00 0.00 2.83
5423 8823 4.206477 TGACAATGACGGTGATGAAGAT 57.794 40.909 0.00 0.00 0.00 2.40
5826 10369 9.725019 TCTTATTGTGTTCTCTTGTGATTATGT 57.275 29.630 0.00 0.00 0.00 2.29
6079 10639 4.159506 TGGCAGCATAAATGTTACCCTTTC 59.840 41.667 0.00 0.00 0.00 2.62
6230 11161 0.657840 AGACTCGTGCTTTGCAACAC 59.342 50.000 0.00 4.17 41.47 3.32
6435 12999 2.108168 CAATCTACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
6436 13000 2.074729 ATCTACTCCCTCCGTTCCAG 57.925 55.000 0.00 0.00 0.00 3.86
6441 13005 3.047695 ACTCCCTCCGTTCCAGAATAT 57.952 47.619 0.00 0.00 0.00 1.28
6442 13006 4.194678 ACTCCCTCCGTTCCAGAATATA 57.805 45.455 0.00 0.00 0.00 0.86
6443 13007 4.553678 ACTCCCTCCGTTCCAGAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
6444 13008 4.589374 ACTCCCTCCGTTCCAGAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
6445 13009 3.901844 TCCCTCCGTTCCAGAATATAAGG 59.098 47.826 0.00 0.00 0.00 2.69
6447 13011 4.503296 CCCTCCGTTCCAGAATATAAGGTG 60.503 50.000 0.00 0.00 0.00 4.00
6448 13012 4.101119 CCTCCGTTCCAGAATATAAGGTGT 59.899 45.833 0.00 0.00 0.00 4.16
6451 13015 7.177921 CCTCCGTTCCAGAATATAAGGTGTATA 59.822 40.741 0.00 0.00 0.00 1.47
6452 13016 8.118976 TCCGTTCCAGAATATAAGGTGTATAG 57.881 38.462 0.00 0.00 0.00 1.31
6453 13017 7.177921 TCCGTTCCAGAATATAAGGTGTATAGG 59.822 40.741 0.00 0.00 0.00 2.57
6454 13018 7.039223 CCGTTCCAGAATATAAGGTGTATAGGT 60.039 40.741 0.00 0.00 0.00 3.08
6455 13019 8.365647 CGTTCCAGAATATAAGGTGTATAGGTT 58.634 37.037 0.00 0.00 0.00 3.50
6459 13023 7.817962 CCAGAATATAAGGTGTATAGGTTTCCG 59.182 40.741 0.00 0.00 0.00 4.30
6461 13025 8.365647 AGAATATAAGGTGTATAGGTTTCCGTG 58.634 37.037 0.00 0.00 0.00 4.94
6463 13027 1.903860 AGGTGTATAGGTTTCCGTGCA 59.096 47.619 0.00 0.00 0.00 4.57
6464 13028 2.303600 AGGTGTATAGGTTTCCGTGCAA 59.696 45.455 0.00 0.00 0.00 4.08
6465 13029 2.676342 GGTGTATAGGTTTCCGTGCAAG 59.324 50.000 0.00 0.00 0.00 4.01
6466 13030 3.332034 GTGTATAGGTTTCCGTGCAAGT 58.668 45.455 0.00 0.00 0.00 3.16
6468 13032 2.851263 ATAGGTTTCCGTGCAAGTCA 57.149 45.000 0.00 0.00 0.00 3.41
6470 13034 1.021968 AGGTTTCCGTGCAAGTCAAC 58.978 50.000 0.00 1.08 0.00 3.18
6471 13035 0.030235 GGTTTCCGTGCAAGTCAACC 59.970 55.000 12.37 12.37 0.00 3.77
6472 13036 0.736053 GTTTCCGTGCAAGTCAACCA 59.264 50.000 0.00 0.00 0.00 3.67
6473 13037 1.336755 GTTTCCGTGCAAGTCAACCAT 59.663 47.619 0.00 0.00 0.00 3.55
6476 13040 1.336440 TCCGTGCAAGTCAACCATTTG 59.664 47.619 0.00 0.00 0.00 2.32
6477 13041 1.336440 CCGTGCAAGTCAACCATTTGA 59.664 47.619 0.00 0.00 39.55 2.69
6478 13042 2.223688 CCGTGCAAGTCAACCATTTGAA 60.224 45.455 0.00 0.00 43.52 2.69
6479 13043 3.443037 CGTGCAAGTCAACCATTTGAAA 58.557 40.909 0.00 0.00 43.52 2.69
6480 13044 3.486841 CGTGCAAGTCAACCATTTGAAAG 59.513 43.478 0.00 0.00 43.52 2.62
6484 13048 5.350914 TGCAAGTCAACCATTTGAAAGTTTG 59.649 36.000 0.00 0.00 43.52 2.93
6486 13050 6.455513 GCAAGTCAACCATTTGAAAGTTTGAC 60.456 38.462 15.64 15.64 43.52 3.18
6487 13051 5.660460 AGTCAACCATTTGAAAGTTTGACC 58.340 37.500 18.01 7.40 43.52 4.02
6488 13052 5.186797 AGTCAACCATTTGAAAGTTTGACCA 59.813 36.000 18.01 0.00 43.52 4.02
6490 13054 6.035975 GTCAACCATTTGAAAGTTTGACCAAG 59.964 38.462 13.75 0.00 43.52 3.61
6491 13055 5.930837 ACCATTTGAAAGTTTGACCAAGA 57.069 34.783 0.00 0.00 0.00 3.02
6493 13057 6.888105 ACCATTTGAAAGTTTGACCAAGATT 58.112 32.000 0.00 0.00 0.00 2.40
6495 13059 8.650490 ACCATTTGAAAGTTTGACCAAGATTAT 58.350 29.630 0.00 0.00 0.00 1.28
6501 13065 9.567776 TGAAAGTTTGACCAAGATTATAGAACA 57.432 29.630 0.00 0.00 0.00 3.18
6522 13086 9.846248 AGAACAAAATAGAAACATCTGCAATAC 57.154 29.630 0.00 0.00 0.00 1.89
6523 13087 8.986477 AACAAAATAGAAACATCTGCAATACC 57.014 30.769 0.00 0.00 0.00 2.73
6524 13088 8.353423 ACAAAATAGAAACATCTGCAATACCT 57.647 30.769 0.00 0.00 0.00 3.08
6525 13089 9.461312 ACAAAATAGAAACATCTGCAATACCTA 57.539 29.630 0.00 0.00 0.00 3.08
6563 13127 7.102993 TGAAACTACCTTTCATGATCGATCAA 58.897 34.615 30.41 13.79 42.85 2.57
6564 13128 7.606073 TGAAACTACCTTTCATGATCGATCAAA 59.394 33.333 30.41 18.86 42.85 2.69
6566 13130 7.488187 ACTACCTTTCATGATCGATCAAATG 57.512 36.000 30.41 24.02 40.69 2.32
6567 13131 7.275183 ACTACCTTTCATGATCGATCAAATGA 58.725 34.615 30.41 25.74 40.69 2.57
6569 13133 9.428097 CTACCTTTCATGATCGATCAAATGATA 57.572 33.333 30.41 22.03 40.69 2.15
6570 13134 8.859236 ACCTTTCATGATCGATCAAATGATAT 57.141 30.769 30.41 10.76 40.69 1.63
6571 13135 9.948964 ACCTTTCATGATCGATCAAATGATATA 57.051 29.630 30.41 13.56 40.69 0.86
6624 13188 7.589574 TTTCTAAAAACTTGGTCAAACTTGC 57.410 32.000 0.00 0.00 0.00 4.01
6625 13189 6.274157 TCTAAAAACTTGGTCAAACTTGCA 57.726 33.333 0.00 0.00 0.00 4.08
6626 13190 6.096695 TCTAAAAACTTGGTCAAACTTGCAC 58.903 36.000 0.00 0.00 0.00 4.57
6627 13191 4.535526 AAAACTTGGTCAAACTTGCACT 57.464 36.364 0.00 0.00 0.00 4.40
6630 13194 1.670811 CTTGGTCAAACTTGCACTCGT 59.329 47.619 0.00 0.00 0.00 4.18
6631 13195 1.745232 TGGTCAAACTTGCACTCGTT 58.255 45.000 0.00 0.00 0.00 3.85
6632 13196 2.088423 TGGTCAAACTTGCACTCGTTT 58.912 42.857 0.00 0.00 33.92 3.60
6639 13203 4.434713 AACTTGCACTCGTTTGACTTTT 57.565 36.364 0.00 0.00 0.00 2.27
6640 13204 3.758300 ACTTGCACTCGTTTGACTTTTG 58.242 40.909 0.00 0.00 0.00 2.44
6641 13205 3.190535 ACTTGCACTCGTTTGACTTTTGT 59.809 39.130 0.00 0.00 0.00 2.83
6642 13206 4.393680 ACTTGCACTCGTTTGACTTTTGTA 59.606 37.500 0.00 0.00 0.00 2.41
6644 13208 5.298197 TGCACTCGTTTGACTTTTGTAAA 57.702 34.783 0.00 0.00 0.00 2.01
6646 13210 6.150318 TGCACTCGTTTGACTTTTGTAAAAA 58.850 32.000 0.00 0.00 34.75 1.94
6648 13212 6.088350 GCACTCGTTTGACTTTTGTAAAAACA 59.912 34.615 0.00 0.00 38.20 2.83
6651 13215 9.198837 ACTCGTTTGACTTTTGTAAAAACAAAT 57.801 25.926 16.86 0.00 39.07 2.32
6657 13221 9.930693 TTGACTTTTGTAAAAACAAATACACCT 57.069 25.926 4.67 0.00 39.07 4.00
6658 13222 9.930693 TGACTTTTGTAAAAACAAATACACCTT 57.069 25.926 4.67 0.00 39.07 3.50
6693 13359 9.589111 GAACAGAGGGAGTATAAGTCTTTTTAG 57.411 37.037 0.00 0.00 0.00 1.85
6766 13432 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
6881 13553 7.972832 TCTTTGGTTTGACATCTTATAACGT 57.027 32.000 0.00 0.00 0.00 3.99
6882 13554 8.025243 TCTTTGGTTTGACATCTTATAACGTC 57.975 34.615 0.00 0.00 0.00 4.34
6883 13555 7.876068 TCTTTGGTTTGACATCTTATAACGTCT 59.124 33.333 0.00 0.00 0.00 4.18
6884 13556 7.972832 TTGGTTTGACATCTTATAACGTCTT 57.027 32.000 0.00 0.00 0.00 3.01
6885 13557 7.591006 TGGTTTGACATCTTATAACGTCTTC 57.409 36.000 0.00 0.00 0.00 2.87
6997 13678 1.207089 CCTCGACCAAATGGAGTAGCA 59.793 52.381 6.42 0.00 38.94 3.49
7075 13762 4.080919 TCGGATGAGGAACAAAGTGATGAT 60.081 41.667 0.00 0.00 0.00 2.45
7325 14015 4.003648 AGACGTTAAGCCAATGAAGAAGG 58.996 43.478 0.00 0.00 0.00 3.46
7492 14202 6.263617 ACATAAAACGCAAGAGTAAAAAGGGA 59.736 34.615 0.00 0.00 43.62 4.20
7635 14348 4.862641 AAAGGTACTACCAGCATCCATT 57.137 40.909 8.01 0.00 41.95 3.16
7641 14354 4.156455 ACTACCAGCATCCATTACCTTG 57.844 45.455 0.00 0.00 0.00 3.61
7657 14373 7.998964 CCATTACCTTGATTTACCCATCTTACT 59.001 37.037 0.00 0.00 0.00 2.24
7661 14377 8.980481 ACCTTGATTTACCCATCTTACTAATG 57.020 34.615 0.00 0.00 0.00 1.90
7706 14423 7.386059 TCTGAACTAGTGTAATTCATGCTGAA 58.614 34.615 0.00 1.85 41.09 3.02
7762 14479 1.608590 CGAAAGCAAGCTGGGAAGAAA 59.391 47.619 0.00 0.00 0.00 2.52
7795 14524 2.578021 AGGCACATTGGATAGTGAACCT 59.422 45.455 0.00 0.00 37.97 3.50
8000 14732 5.660417 AGATGATCGTCTTGGCCTGATATAT 59.340 40.000 11.86 0.00 0.00 0.86
8007 14739 7.123383 TCGTCTTGGCCTGATATATTCCTATA 58.877 38.462 3.32 0.00 0.00 1.31
8008 14740 7.285629 TCGTCTTGGCCTGATATATTCCTATAG 59.714 40.741 3.32 0.00 0.00 1.31
8032 14764 1.280133 TCCTGATGAAAGTGCCTCTGG 59.720 52.381 0.00 0.00 0.00 3.86
8158 14892 3.999663 CTGAAGATTTTCTCAGCCGTTCT 59.000 43.478 0.00 0.00 34.31 3.01
8196 14930 1.139256 TGCAAGGGTCGTGTTTACTGA 59.861 47.619 0.00 0.00 0.00 3.41
8208 14942 4.379793 CGTGTTTACTGACTGTTACGGTAC 59.620 45.833 0.00 0.00 0.00 3.34
8280 15015 2.716828 CTCGCACGTGTTACAGCCG 61.717 63.158 18.38 10.20 0.00 5.52
8355 17141 4.648651 AGCGTCTGTAAGGGTTAAATTGT 58.351 39.130 0.00 0.00 0.00 2.71
8385 17171 3.732892 CCGCAACCGCAATCCGTT 61.733 61.111 0.00 0.00 38.40 4.44
8454 17243 4.580551 GCATCTTGCCATGCCCGC 62.581 66.667 1.76 0.00 43.03 6.13
8472 17261 2.711924 GGCTGCTGACGCTATTGC 59.288 61.111 0.00 0.00 36.97 3.56
8765 17613 0.469494 TGACGTGATGCATAGCCCAT 59.531 50.000 0.00 0.00 0.00 4.00
8805 17653 9.696917 TTAAGCTTTTGGATGAATTTTTCTCTC 57.303 29.630 3.20 0.00 0.00 3.20
8829 17677 8.236585 TCTAAGAGAGTATGACTAGACGTACT 57.763 38.462 21.90 21.90 42.81 2.73
8854 17702 7.172361 CTCTAGGTTTATAGAAGGCAGAATTGC 59.828 40.741 0.00 0.00 39.16 3.56
8877 17725 6.146510 TGCAAGTACAAAAATACTACCACTCG 59.853 38.462 0.00 0.00 34.18 4.18
8880 17728 9.195411 CAAGTACAAAAATACTACCACTCGTTA 57.805 33.333 0.00 0.00 34.18 3.18
8892 17740 4.253685 ACCACTCGTTATGAACAATGAGG 58.746 43.478 9.26 0.00 43.12 3.86
8965 17813 4.464069 ACAAAACTACAAAGCAAAGGCA 57.536 36.364 0.00 0.00 44.61 4.75
8969 17817 1.956477 ACTACAAAGCAAAGGCACCTG 59.044 47.619 0.00 0.00 44.61 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.287720 GTTAGCTTGTTGTTTACTGCCAC 58.712 43.478 0.00 0.00 0.00 5.01
73 74 4.918810 ACTTTTGAGGGTTAGCTTGTTG 57.081 40.909 0.00 0.00 0.00 3.33
74 75 4.953579 TGAACTTTTGAGGGTTAGCTTGTT 59.046 37.500 0.00 0.00 0.00 2.83
75 76 4.532834 TGAACTTTTGAGGGTTAGCTTGT 58.467 39.130 0.00 0.00 0.00 3.16
211 215 7.007723 TGGTGGAAAGGTGTGTAAGAATTATT 58.992 34.615 0.00 0.00 30.46 1.40
242 246 2.262423 ACGAGCCTCTTTCAGCTTTT 57.738 45.000 0.00 0.00 40.11 2.27
247 251 1.443802 GGGAAACGAGCCTCTTTCAG 58.556 55.000 14.40 0.00 0.00 3.02
287 291 5.067413 TCAGTAGTCGTTTCTAGGCTTATGG 59.933 44.000 0.00 0.00 0.00 2.74
362 368 0.028902 CGCCATCGTCGATGTGAGTA 59.971 55.000 28.46 0.00 38.28 2.59
402 408 1.332889 ATCTGCTGGACATCTCGCCA 61.333 55.000 0.00 0.00 0.00 5.69
437 443 3.149196 AGATTGTTGAGGCGTTTGATGT 58.851 40.909 0.00 0.00 0.00 3.06
478 484 2.008697 GCTTCTCGATCTCGCTCGC 61.009 63.158 0.00 0.00 38.52 5.03
504 510 4.308458 TAACACCTGCCGCTGCGT 62.308 61.111 21.59 1.81 41.78 5.24
517 523 3.709653 CTCACCCTGTAATAGCCCTAACA 59.290 47.826 0.00 0.00 0.00 2.41
527 534 2.379972 CGAGGAGTCTCACCCTGTAAT 58.620 52.381 1.47 0.00 39.95 1.89
696 704 1.063006 CATTGCGCCCAATCTCACG 59.937 57.895 4.18 0.00 39.60 4.35
853 862 0.521735 CTACAAAAAGACCTGGCCGC 59.478 55.000 0.00 0.00 0.00 6.53
971 980 4.473520 CTAGGGGTGCAGTGGCGG 62.474 72.222 0.00 0.00 45.35 6.13
973 982 4.033776 TGCTAGGGGTGCAGTGGC 62.034 66.667 0.00 0.00 41.68 5.01
1167 1176 0.249398 GCTTCTTCCCGTGCTCCTTA 59.751 55.000 0.00 0.00 0.00 2.69
1179 1188 3.008485 TCTTCTCCTTCTTGGGCTTCTTC 59.992 47.826 0.00 0.00 36.20 2.87
1234 1243 4.785453 CTTCACCTCCGCAGCCCC 62.785 72.222 0.00 0.00 0.00 5.80
1311 1320 3.319198 GGCCTGAACCTCGGGTCA 61.319 66.667 3.30 3.30 46.65 4.02
1515 1533 3.070748 GACCAGCTTCACTTTCTCCTTC 58.929 50.000 0.00 0.00 0.00 3.46
1540 1567 3.452264 TCCACCTCATCGTCATCATCTTT 59.548 43.478 0.00 0.00 0.00 2.52
1590 2076 4.634883 TCTTCGTCATCGCTACTAGAACTT 59.365 41.667 0.00 0.00 36.96 2.66
1668 2169 8.045176 ACAATAGCAGAGAAAGGTAATCAAAC 57.955 34.615 0.00 0.00 0.00 2.93
1705 2207 2.287248 GCATAGGCGAAAATGGAGAAGC 60.287 50.000 0.00 0.00 0.00 3.86
1791 2297 2.691409 ACCAACCAGACCATACATCG 57.309 50.000 0.00 0.00 0.00 3.84
1837 2347 7.148507 GCTATCGACATGGAAGATGGAATTAAG 60.149 40.741 12.40 2.58 0.00 1.85
2002 3805 8.411318 GAAACACACATTTTTCTGTTTCTGAT 57.589 30.769 12.65 0.00 44.69 2.90
2014 3817 6.205784 CGTGGATTACAGAAACACACATTTT 58.794 36.000 0.00 0.00 30.99 1.82
2033 3836 3.132824 AGTCACATATTGAGATGCGTGGA 59.867 43.478 0.00 0.00 33.71 4.02
2239 4045 4.322080 ACATGTCTCTCTTGACGACAAA 57.678 40.909 1.35 0.00 40.61 2.83
2469 4285 9.382275 CAAAAGCATGGCTAAAATAATTTAGGT 57.618 29.630 11.39 0.00 45.37 3.08
2476 4292 9.732130 AAATAACCAAAAGCATGGCTAAAATAA 57.268 25.926 0.00 0.00 44.75 1.40
2577 4440 5.501156 CACAGAGCCCTTAAGAGGTTTATT 58.499 41.667 3.36 0.00 41.85 1.40
2587 4468 0.255890 GCCATCCACAGAGCCCTTAA 59.744 55.000 0.00 0.00 0.00 1.85
2614 4495 9.533831 AAGTCCTGTTTACCATCATCTATTTTT 57.466 29.630 0.00 0.00 0.00 1.94
2778 4674 1.346722 GTGCCTACCACCTAGTGTGTT 59.653 52.381 9.57 0.17 43.85 3.32
3035 4932 4.945543 CCTTACCGCCTTAAAAACATAGGT 59.054 41.667 0.00 0.00 34.78 3.08
3036 4933 4.201980 GCCTTACCGCCTTAAAAACATAGG 60.202 45.833 0.00 0.00 0.00 2.57
3037 4934 4.495184 CGCCTTACCGCCTTAAAAACATAG 60.495 45.833 0.00 0.00 0.00 2.23
3038 4935 3.374678 CGCCTTACCGCCTTAAAAACATA 59.625 43.478 0.00 0.00 0.00 2.29
3039 4936 2.162809 CGCCTTACCGCCTTAAAAACAT 59.837 45.455 0.00 0.00 0.00 2.71
3040 4937 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
3041 4938 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
3042 4939 2.181954 TCGCCTTACCGCCTTAAAAA 57.818 45.000 0.00 0.00 0.00 1.94
3043 4940 2.093341 AGATCGCCTTACCGCCTTAAAA 60.093 45.455 0.00 0.00 0.00 1.52
3044 4941 1.483415 AGATCGCCTTACCGCCTTAAA 59.517 47.619 0.00 0.00 0.00 1.52
3045 4942 1.117150 AGATCGCCTTACCGCCTTAA 58.883 50.000 0.00 0.00 0.00 1.85
3046 4943 1.985473 TAGATCGCCTTACCGCCTTA 58.015 50.000 0.00 0.00 0.00 2.69
3047 4944 1.068741 CTTAGATCGCCTTACCGCCTT 59.931 52.381 0.00 0.00 0.00 4.35
3048 4945 0.674534 CTTAGATCGCCTTACCGCCT 59.325 55.000 0.00 0.00 0.00 5.52
3049 4946 0.319641 CCTTAGATCGCCTTACCGCC 60.320 60.000 0.00 0.00 0.00 6.13
3050 4947 0.944788 GCCTTAGATCGCCTTACCGC 60.945 60.000 0.00 0.00 0.00 5.68
3051 4948 0.663568 CGCCTTAGATCGCCTTACCG 60.664 60.000 0.00 0.00 0.00 4.02
3052 4949 0.944788 GCGCCTTAGATCGCCTTACC 60.945 60.000 0.00 0.00 45.01 2.85
3053 4950 2.518711 GCGCCTTAGATCGCCTTAC 58.481 57.895 0.00 0.00 45.01 2.34
3059 4956 2.029666 CCCCAGCGCCTTAGATCG 59.970 66.667 2.29 0.00 0.00 3.69
3060 4957 2.427753 CCCCCAGCGCCTTAGATC 59.572 66.667 2.29 0.00 0.00 2.75
3130 5027 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
3131 5028 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
3132 5029 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
3133 5030 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
3134 5031 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
3135 5032 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
3136 5033 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
3137 5034 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
3138 5035 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
3139 5036 1.001378 CCAGCGCCTTACAAATATGCC 60.001 52.381 2.29 0.00 0.00 4.40
3140 5037 1.600413 GCCAGCGCCTTACAAATATGC 60.600 52.381 2.29 0.00 0.00 3.14
3141 5038 1.334059 CGCCAGCGCCTTACAAATATG 60.334 52.381 2.29 0.00 0.00 1.78
3142 5039 0.944386 CGCCAGCGCCTTACAAATAT 59.056 50.000 2.29 0.00 0.00 1.28
3143 5040 1.092921 CCGCCAGCGCCTTACAAATA 61.093 55.000 2.29 0.00 38.24 1.40
3144 5041 2.406616 CCGCCAGCGCCTTACAAAT 61.407 57.895 2.29 0.00 38.24 2.32
3145 5042 3.053291 CCGCCAGCGCCTTACAAA 61.053 61.111 2.29 0.00 38.24 2.83
3174 5071 2.238437 GCTTAGGCGACGCTTAGGC 61.238 63.158 25.71 25.71 36.29 3.93
3175 5072 4.014065 GCTTAGGCGACGCTTAGG 57.986 61.111 20.77 17.82 0.00 2.69
3186 5083 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
3187 5084 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
3188 5085 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
3189 5086 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
3201 5098 1.463444 CTCTGTTTTTAAGGCGTCCCG 59.537 52.381 0.00 0.00 35.76 5.14
3202 5099 1.199327 GCTCTGTTTTTAAGGCGTCCC 59.801 52.381 0.00 0.00 0.00 4.46
3203 5100 1.199327 GGCTCTGTTTTTAAGGCGTCC 59.801 52.381 0.00 0.00 0.00 4.79
3204 5101 2.152016 AGGCTCTGTTTTTAAGGCGTC 58.848 47.619 0.00 0.00 40.27 5.19
3205 5102 2.271944 AGGCTCTGTTTTTAAGGCGT 57.728 45.000 0.00 0.00 40.27 5.68
3206 5103 4.965119 ATTAGGCTCTGTTTTTAAGGCG 57.035 40.909 0.00 0.00 40.27 5.52
3207 5104 6.753107 TGTATTAGGCTCTGTTTTTAAGGC 57.247 37.500 0.00 0.00 35.94 4.35
3208 5105 9.573133 CAATTGTATTAGGCTCTGTTTTTAAGG 57.427 33.333 0.00 0.00 0.00 2.69
3209 5106 9.076596 GCAATTGTATTAGGCTCTGTTTTTAAG 57.923 33.333 7.40 0.00 0.00 1.85
3210 5107 8.802267 AGCAATTGTATTAGGCTCTGTTTTTAA 58.198 29.630 7.40 0.00 0.00 1.52
3211 5108 8.348285 AGCAATTGTATTAGGCTCTGTTTTTA 57.652 30.769 7.40 0.00 0.00 1.52
3212 5109 7.232118 AGCAATTGTATTAGGCTCTGTTTTT 57.768 32.000 7.40 0.00 0.00 1.94
3213 5110 6.840780 AGCAATTGTATTAGGCTCTGTTTT 57.159 33.333 7.40 0.00 0.00 2.43
3214 5111 6.442513 GAGCAATTGTATTAGGCTCTGTTT 57.557 37.500 7.40 0.00 45.61 2.83
3220 5117 6.183347 AGTTCAAGAGCAATTGTATTAGGCT 58.817 36.000 7.40 0.00 37.56 4.58
3221 5118 6.442513 AGTTCAAGAGCAATTGTATTAGGC 57.557 37.500 7.40 0.00 0.00 3.93
3222 5119 8.723942 ACTAGTTCAAGAGCAATTGTATTAGG 57.276 34.615 7.40 0.00 29.70 2.69
3226 5123 9.890629 TGATTACTAGTTCAAGAGCAATTGTAT 57.109 29.630 7.40 0.00 0.00 2.29
3227 5124 9.890629 ATGATTACTAGTTCAAGAGCAATTGTA 57.109 29.630 7.40 0.00 0.00 2.41
3539 5476 2.183679 GAGGGTGAGAGGAATGAGTGT 58.816 52.381 0.00 0.00 0.00 3.55
3780 5717 2.187946 CGAGGAGATGGCGGCTTT 59.812 61.111 11.43 0.00 0.00 3.51
3862 5799 4.687215 GGCTGTCAGGTGCGCAGA 62.687 66.667 12.22 0.66 32.39 4.26
3966 6976 3.121030 CAGAAAGAGGCGGTGGCG 61.121 66.667 0.00 0.00 41.24 5.69
3970 6980 0.037232 GTAGTGCAGAAAGAGGCGGT 60.037 55.000 0.00 0.00 0.00 5.68
3993 7003 2.337879 GACAGTGGCTGTTGGGGTCA 62.338 60.000 3.16 0.00 45.44 4.02
4048 7058 2.297129 GGAGGTGGAGGAGCAGCTT 61.297 63.158 0.00 0.00 0.00 3.74
4049 7059 2.686835 GGAGGTGGAGGAGCAGCT 60.687 66.667 0.00 0.00 0.00 4.24
4050 7060 3.005539 TGGAGGTGGAGGAGCAGC 61.006 66.667 0.00 0.00 0.00 5.25
4051 7061 2.664081 GGTGGAGGTGGAGGAGCAG 61.664 68.421 0.00 0.00 0.00 4.24
4052 7062 2.607750 GGTGGAGGTGGAGGAGCA 60.608 66.667 0.00 0.00 0.00 4.26
4053 7063 2.607750 TGGTGGAGGTGGAGGAGC 60.608 66.667 0.00 0.00 0.00 4.70
4054 7064 2.650116 CGTGGTGGAGGTGGAGGAG 61.650 68.421 0.00 0.00 0.00 3.69
4055 7065 2.603473 CGTGGTGGAGGTGGAGGA 60.603 66.667 0.00 0.00 0.00 3.71
4056 7066 4.394712 GCGTGGTGGAGGTGGAGG 62.395 72.222 0.00 0.00 0.00 4.30
4057 7067 4.394712 GGCGTGGTGGAGGTGGAG 62.395 72.222 0.00 0.00 0.00 3.86
4059 7069 4.033776 ATGGCGTGGTGGAGGTGG 62.034 66.667 0.00 0.00 0.00 4.61
4060 7070 2.747460 CATGGCGTGGTGGAGGTG 60.747 66.667 0.00 0.00 0.00 4.00
4061 7071 2.927856 TCATGGCGTGGTGGAGGT 60.928 61.111 6.90 0.00 0.00 3.85
4062 7072 2.436646 GTCATGGCGTGGTGGAGG 60.437 66.667 6.90 0.00 0.00 4.30
4063 7073 2.436646 GGTCATGGCGTGGTGGAG 60.437 66.667 6.90 0.00 0.00 3.86
4064 7074 4.028490 GGGTCATGGCGTGGTGGA 62.028 66.667 6.90 0.00 0.00 4.02
4066 7076 3.680620 ATCGGGTCATGGCGTGGTG 62.681 63.158 6.90 0.00 0.00 4.17
4067 7077 3.399181 ATCGGGTCATGGCGTGGT 61.399 61.111 6.90 0.00 0.00 4.16
4068 7078 2.896854 CATCGGGTCATGGCGTGG 60.897 66.667 6.90 0.00 0.00 4.94
4069 7079 2.173669 GTCATCGGGTCATGGCGTG 61.174 63.158 0.00 0.00 0.00 5.34
4070 7080 2.186903 GTCATCGGGTCATGGCGT 59.813 61.111 0.00 0.00 0.00 5.68
4071 7081 2.588877 GGTCATCGGGTCATGGCG 60.589 66.667 0.00 0.00 0.00 5.69
4072 7082 2.203209 GGGTCATCGGGTCATGGC 60.203 66.667 0.00 0.00 0.00 4.40
4073 7083 2.510906 GGGGTCATCGGGTCATGG 59.489 66.667 0.00 0.00 0.00 3.66
4074 7084 2.108976 CGGGGTCATCGGGTCATG 59.891 66.667 0.00 0.00 0.00 3.07
4075 7085 3.861797 GCGGGGTCATCGGGTCAT 61.862 66.667 0.00 0.00 0.00 3.06
4329 7369 6.701340 TGACAGTAGACATCATTTAGCAACT 58.299 36.000 0.00 0.00 0.00 3.16
4330 7370 6.456181 GCTGACAGTAGACATCATTTAGCAAC 60.456 42.308 3.99 0.00 0.00 4.17
4331 7371 5.582269 GCTGACAGTAGACATCATTTAGCAA 59.418 40.000 3.99 0.00 0.00 3.91
4372 7412 1.602377 GTCTCGGTGTTTGGTTTCCTG 59.398 52.381 0.00 0.00 0.00 3.86
4374 7414 0.584876 CGTCTCGGTGTTTGGTTTCC 59.415 55.000 0.00 0.00 0.00 3.13
4399 7439 5.619220 AGAGCTAATGAGATGGAATGGAAC 58.381 41.667 0.00 0.00 0.00 3.62
4424 7464 3.874383 TGGTTCCATCTCCTTGTTTCA 57.126 42.857 0.00 0.00 0.00 2.69
4498 7538 8.715191 TGTACAAGTAAAGGTAACGAAAAGAA 57.285 30.769 0.00 0.00 46.39 2.52
4609 7655 1.683629 CGTAAGGGGGCTTAATTGGCA 60.684 52.381 7.37 0.00 0.00 4.92
4627 7674 2.283101 ATGCCCATTGCCACACGT 60.283 55.556 0.00 0.00 40.16 4.49
4737 7786 4.035208 CCTAACAAACCAGTCACACACTTC 59.965 45.833 0.00 0.00 30.26 3.01
4783 7832 9.039870 CATAAACATCTTTAAGCCAAACAAACA 57.960 29.630 0.00 0.00 0.00 2.83
4784 7833 9.040939 ACATAAACATCTTTAAGCCAAACAAAC 57.959 29.630 0.00 0.00 0.00 2.93
4861 7911 4.140686 GGGGATTAGGGATTTCTTTGGGAT 60.141 45.833 0.00 0.00 0.00 3.85
4941 8304 8.324163 CACAGGAAGTGCTTTAATACTTAACT 57.676 34.615 0.00 0.00 42.15 2.24
5423 8823 5.640783 GTCTTCATCACTGTCATTGTCATCA 59.359 40.000 0.00 0.00 0.00 3.07
5795 10338 9.778741 ATCACAAGAGAACACAATAAGAAACTA 57.221 29.630 0.00 0.00 0.00 2.24
5826 10369 5.419542 CATAGTAGTACCTGCAGCAAGAAA 58.580 41.667 8.66 0.00 0.00 2.52
6079 10639 6.115446 TCATAACTTATTCAGCCACTTCTGG 58.885 40.000 0.00 0.00 41.13 3.86
6230 11161 3.366679 CCCATGTGAGCTTAACTTTGCTG 60.367 47.826 0.00 0.00 39.91 4.41
6435 12999 8.365647 CACGGAAACCTATACACCTTATATTCT 58.634 37.037 0.00 0.00 0.00 2.40
6436 13000 7.117379 GCACGGAAACCTATACACCTTATATTC 59.883 40.741 0.00 0.00 0.00 1.75
6441 13005 3.514706 TGCACGGAAACCTATACACCTTA 59.485 43.478 0.00 0.00 0.00 2.69
6442 13006 2.303600 TGCACGGAAACCTATACACCTT 59.696 45.455 0.00 0.00 0.00 3.50
6443 13007 1.903860 TGCACGGAAACCTATACACCT 59.096 47.619 0.00 0.00 0.00 4.00
6444 13008 2.389962 TGCACGGAAACCTATACACC 57.610 50.000 0.00 0.00 0.00 4.16
6445 13009 3.332034 ACTTGCACGGAAACCTATACAC 58.668 45.455 0.00 0.00 0.00 2.90
6447 13011 3.592059 TGACTTGCACGGAAACCTATAC 58.408 45.455 0.00 0.00 0.00 1.47
6448 13012 3.965379 TGACTTGCACGGAAACCTATA 57.035 42.857 0.00 0.00 0.00 1.31
6451 13015 1.021968 GTTGACTTGCACGGAAACCT 58.978 50.000 0.00 0.00 0.00 3.50
6452 13016 0.030235 GGTTGACTTGCACGGAAACC 59.970 55.000 11.74 11.74 0.00 3.27
6453 13017 0.736053 TGGTTGACTTGCACGGAAAC 59.264 50.000 0.00 0.00 0.00 2.78
6454 13018 1.686355 ATGGTTGACTTGCACGGAAA 58.314 45.000 0.00 0.00 0.00 3.13
6455 13019 1.686355 AATGGTTGACTTGCACGGAA 58.314 45.000 0.00 0.00 0.00 4.30
6459 13023 4.432712 ACTTTCAAATGGTTGACTTGCAC 58.567 39.130 0.00 0.00 43.52 4.57
6461 13025 5.580297 TCAAACTTTCAAATGGTTGACTTGC 59.420 36.000 5.32 0.00 43.52 4.01
6466 13030 5.667539 TGGTCAAACTTTCAAATGGTTGA 57.332 34.783 5.32 5.32 42.12 3.18
6468 13032 6.293004 TCTTGGTCAAACTTTCAAATGGTT 57.707 33.333 0.00 0.00 0.00 3.67
6497 13061 9.076596 GGTATTGCAGATGTTTCTATTTTGTTC 57.923 33.333 0.00 0.00 0.00 3.18
6498 13062 8.806146 AGGTATTGCAGATGTTTCTATTTTGTT 58.194 29.630 0.00 0.00 0.00 2.83
6499 13063 8.353423 AGGTATTGCAGATGTTTCTATTTTGT 57.647 30.769 0.00 0.00 0.00 2.83
6539 13103 7.539712 TTGATCGATCATGAAAGGTAGTTTC 57.460 36.000 27.75 0.00 37.77 2.78
6541 13105 7.770433 TCATTTGATCGATCATGAAAGGTAGTT 59.230 33.333 27.75 1.96 36.56 2.24
6543 13107 7.719778 TCATTTGATCGATCATGAAAGGTAG 57.280 36.000 27.75 11.21 36.56 3.18
6545 13109 8.859236 ATATCATTTGATCGATCATGAAAGGT 57.141 30.769 26.96 16.91 36.56 3.50
6598 13162 8.499967 GCAAGTTTGACCAAGTTTTTAGAAAAA 58.500 29.630 0.00 0.00 35.67 1.94
6602 13166 6.071616 AGTGCAAGTTTGACCAAGTTTTTAGA 60.072 34.615 0.00 0.00 0.00 2.10
6603 13167 6.099341 AGTGCAAGTTTGACCAAGTTTTTAG 58.901 36.000 0.00 0.00 0.00 1.85
6607 13171 3.427503 CGAGTGCAAGTTTGACCAAGTTT 60.428 43.478 0.00 0.00 0.00 2.66
6608 13172 2.097466 CGAGTGCAAGTTTGACCAAGTT 59.903 45.455 0.00 0.00 0.00 2.66
6609 13173 1.670811 CGAGTGCAAGTTTGACCAAGT 59.329 47.619 0.00 0.00 0.00 3.16
6610 13174 1.670811 ACGAGTGCAAGTTTGACCAAG 59.329 47.619 0.00 0.00 0.00 3.61
6611 13175 1.745232 ACGAGTGCAAGTTTGACCAA 58.255 45.000 0.00 0.00 0.00 3.67
6612 13176 1.745232 AACGAGTGCAAGTTTGACCA 58.255 45.000 0.00 0.00 0.00 4.02
6613 13177 2.844122 AAACGAGTGCAAGTTTGACC 57.156 45.000 13.25 0.00 38.90 4.02
6618 13182 4.165779 CAAAAGTCAAACGAGTGCAAGTT 58.834 39.130 0.00 0.00 0.00 2.66
6620 13184 3.758300 ACAAAAGTCAAACGAGTGCAAG 58.242 40.909 0.00 0.00 0.00 4.01
6622 13186 4.948608 TTACAAAAGTCAAACGAGTGCA 57.051 36.364 0.00 0.00 0.00 4.57
6623 13187 6.088350 TGTTTTTACAAAAGTCAAACGAGTGC 59.912 34.615 0.00 0.00 31.24 4.40
6624 13188 7.555639 TGTTTTTACAAAAGTCAAACGAGTG 57.444 32.000 0.00 0.00 31.24 3.51
6625 13189 8.576936 TTTGTTTTTACAAAAGTCAAACGAGT 57.423 26.923 1.27 0.00 36.75 4.18
6631 13195 9.930693 AGGTGTATTTGTTTTTACAAAAGTCAA 57.069 25.926 7.45 1.04 42.04 3.18
6632 13196 9.930693 AAGGTGTATTTGTTTTTACAAAAGTCA 57.069 25.926 7.45 5.19 42.04 3.41
6651 13215 8.069356 TCCCTCTGTTCCTTTATATAAGGTGTA 58.931 37.037 4.13 0.00 38.55 2.90
6652 13216 6.906901 TCCCTCTGTTCCTTTATATAAGGTGT 59.093 38.462 4.13 0.00 38.55 4.16
6653 13217 7.071321 ACTCCCTCTGTTCCTTTATATAAGGTG 59.929 40.741 4.13 0.00 38.55 4.00
6654 13218 7.140304 ACTCCCTCTGTTCCTTTATATAAGGT 58.860 38.462 4.13 0.00 38.55 3.50
6655 13219 7.619512 ACTCCCTCTGTTCCTTTATATAAGG 57.380 40.000 0.00 0.00 38.78 2.69
6659 13223 9.900112 ACTTATACTCCCTCTGTTCCTTTATAT 57.100 33.333 0.00 0.00 0.00 0.86
6662 13226 7.420029 AGACTTATACTCCCTCTGTTCCTTTA 58.580 38.462 0.00 0.00 0.00 1.85
6664 13228 5.844601 AGACTTATACTCCCTCTGTTCCTT 58.155 41.667 0.00 0.00 0.00 3.36
6665 13229 5.475398 AGACTTATACTCCCTCTGTTCCT 57.525 43.478 0.00 0.00 0.00 3.36
6666 13230 6.547930 AAAGACTTATACTCCCTCTGTTCC 57.452 41.667 0.00 0.00 0.00 3.62
6667 13231 9.589111 CTAAAAAGACTTATACTCCCTCTGTTC 57.411 37.037 0.00 0.00 0.00 3.18
6669 13233 8.896722 TCTAAAAAGACTTATACTCCCTCTGT 57.103 34.615 0.00 0.00 0.00 3.41
6693 13359 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
6766 13432 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
6997 13678 9.524106 CGTTCCTTATTTGTTAACTTCCTTTTT 57.476 29.630 7.22 0.00 0.00 1.94
7075 13762 5.955961 TGAATGTTATCTCCATGTCCTGA 57.044 39.130 0.00 0.00 0.00 3.86
7325 14015 1.202940 ACCTTTGGCCTTCACCTTCTC 60.203 52.381 3.32 0.00 0.00 2.87
7492 14202 3.425659 GACAGAATCCTTGCCCTTCTTT 58.574 45.455 0.00 0.00 0.00 2.52
7534 14244 5.690464 ACCTCTTGTCATTGCTAAGATCT 57.310 39.130 0.00 0.00 30.78 2.75
7615 14328 4.102681 GGTAATGGATGCTGGTAGTACCTT 59.897 45.833 20.07 6.20 39.58 3.50
7673 14389 8.043113 TGAATTACACTAGTTCAGATCAAGCAT 58.957 33.333 0.00 0.00 31.83 3.79
7706 14423 6.738453 GCACTCCTGTACAAAACCATTCAAAT 60.738 38.462 0.00 0.00 0.00 2.32
7708 14425 4.037446 GCACTCCTGTACAAAACCATTCAA 59.963 41.667 0.00 0.00 0.00 2.69
7811 14540 1.523938 GCAATGTACTCCCCGGAGC 60.524 63.158 10.79 0.00 45.54 4.70
8185 14919 3.374745 ACCGTAACAGTCAGTAAACACG 58.625 45.455 0.00 0.00 0.00 4.49
8196 14930 6.881065 TCACTATAGTTGAGTACCGTAACAGT 59.119 38.462 1.56 0.98 0.00 3.55
8208 14942 6.992063 AAGCCAACATTCACTATAGTTGAG 57.008 37.500 1.56 0.00 42.87 3.02
8280 15015 1.915614 CTGGATTCCAGCGTGCACAC 61.916 60.000 19.49 7.31 45.13 3.82
8301 15036 6.982852 TGGAAGATATTTGGACTCGACTATC 58.017 40.000 0.00 0.00 0.00 2.08
8385 17171 1.820090 CGGCAGGAAGGTGGGTTTAAA 60.820 52.381 0.00 0.00 0.00 1.52
8472 17261 2.047844 CATAGGAGATGGCCGGCG 60.048 66.667 22.54 0.00 0.00 6.46
8477 17266 2.866762 GTCAAACGTCATAGGAGATGGC 59.133 50.000 0.00 0.00 0.00 4.40
8765 17613 7.884877 TCCAAAAGCTTAATCTGATGAGAAAGA 59.115 33.333 0.00 0.00 0.00 2.52
8805 17653 8.511465 GAGTACGTCTAGTCATACTCTCTTAG 57.489 42.308 13.61 0.00 40.18 2.18
8823 17671 6.125029 TGCCTTCTATAAACCTAGAGTACGT 58.875 40.000 0.00 0.00 0.00 3.57
8824 17672 6.485984 TCTGCCTTCTATAAACCTAGAGTACG 59.514 42.308 0.00 0.00 0.00 3.67
8829 17677 6.992715 GCAATTCTGCCTTCTATAAACCTAGA 59.007 38.462 0.00 0.00 43.26 2.43
8830 17678 7.195839 GCAATTCTGCCTTCTATAAACCTAG 57.804 40.000 0.00 0.00 43.26 3.02
8854 17702 7.647907 ACGAGTGGTAGTATTTTTGTACTTG 57.352 36.000 0.00 0.00 36.39 3.16
8877 17725 4.034048 CGTGCTACCCTCATTGTTCATAAC 59.966 45.833 0.00 0.00 0.00 1.89
8880 17728 2.236146 TCGTGCTACCCTCATTGTTCAT 59.764 45.455 0.00 0.00 0.00 2.57
8892 17740 1.525619 GAGTGTGTTGTTCGTGCTACC 59.474 52.381 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.