Multiple sequence alignment - TraesCS2B01G241800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G241800 chr2B 100.000 5779 0 0 1 5779 245795177 245789399 0.000000e+00 10672.0
1 TraesCS2B01G241800 chr2B 99.414 512 3 0 1 512 245803526 245803015 0.000000e+00 929.0
2 TraesCS2B01G241800 chr2B 99.029 515 5 0 1 515 404371788 404372302 0.000000e+00 924.0
3 TraesCS2B01G241800 chr2B 78.811 656 112 13 1112 1743 245823337 245822685 3.220000e-112 416.0
4 TraesCS2B01G241800 chr2B 74.695 656 123 24 1111 1737 244919741 244919100 9.610000e-63 252.0
5 TraesCS2B01G241800 chr2B 95.270 148 7 0 4958 5105 785737502 785737355 9.680000e-58 235.0
6 TraesCS2B01G241800 chr2B 73.890 563 119 18 1093 1634 246119315 246118760 3.530000e-47 200.0
7 TraesCS2B01G241800 chr2B 92.771 83 6 0 834 916 245811985 245812067 2.830000e-23 121.0
8 TraesCS2B01G241800 chr2B 100.000 60 0 0 5102 5161 799115712 799115771 1.700000e-20 111.0
9 TraesCS2B01G241800 chr2B 100.000 28 0 0 3093 3120 247368598 247368625 1.000000e-02 52.8
10 TraesCS2B01G241800 chr2A 91.413 2038 111 30 931 2922 203321955 203319936 0.000000e+00 2736.0
11 TraesCS2B01G241800 chr2A 94.189 1239 55 6 3116 4345 203319828 203318598 0.000000e+00 1873.0
12 TraesCS2B01G241800 chr2A 93.304 448 30 0 4363 4810 203318494 203318047 0.000000e+00 662.0
13 TraesCS2B01G241800 chr2A 79.237 655 111 9 1112 1743 203328841 203328189 3.200000e-117 433.0
14 TraesCS2B01G241800 chr2A 89.062 128 12 1 2935 3062 203319950 203319825 2.160000e-34 158.0
15 TraesCS2B01G241800 chr2A 96.667 60 2 0 5102 5161 516705247 516705306 3.680000e-17 100.0
16 TraesCS2B01G241800 chr2D 93.076 1863 79 24 3119 4958 189387587 189385752 0.000000e+00 2680.0
17 TraesCS2B01G241800 chr2D 95.702 1303 41 4 913 2202 189389740 189388440 0.000000e+00 2082.0
18 TraesCS2B01G241800 chr2D 91.956 721 41 5 2202 2922 189388410 189387707 0.000000e+00 994.0
19 TraesCS2B01G241800 chr2D 93.513 632 24 5 5163 5779 352201314 352200685 0.000000e+00 924.0
20 TraesCS2B01G241800 chr2D 79.102 646 109 13 1112 1734 189532728 189532086 6.920000e-114 422.0
21 TraesCS2B01G241800 chr2D 78.870 478 96 3 1103 1576 189676312 189675836 9.340000e-83 318.0
22 TraesCS2B01G241800 chr2D 80.759 369 64 5 1102 1465 189705173 189704807 1.230000e-71 281.0
23 TraesCS2B01G241800 chr2D 95.862 145 6 0 4958 5102 29128373 29128517 9.680000e-58 235.0
24 TraesCS2B01G241800 chr2D 95.270 148 7 0 4958 5105 298463390 298463243 9.680000e-58 235.0
25 TraesCS2B01G241800 chr5A 99.414 512 3 0 1 512 403892061 403892572 0.000000e+00 929.0
26 TraesCS2B01G241800 chr5A 99.219 512 4 0 1 512 70315312 70314801 0.000000e+00 924.0
27 TraesCS2B01G241800 chr5A 99.219 512 4 0 1 512 592969350 592969861 0.000000e+00 924.0
28 TraesCS2B01G241800 chr4A 99.220 513 4 0 1 513 625138806 625138294 0.000000e+00 926.0
29 TraesCS2B01G241800 chr4A 99.219 512 4 0 1 512 653832746 653833257 0.000000e+00 924.0
30 TraesCS2B01G241800 chr4A 98.425 254 3 1 655 908 632933622 632933370 4.110000e-121 446.0
31 TraesCS2B01G241800 chr4A 97.351 151 4 0 529 679 632933696 632933546 2.070000e-64 257.0
32 TraesCS2B01G241800 chr4A 95.181 83 4 0 834 916 632938297 632938379 1.310000e-26 132.0
33 TraesCS2B01G241800 chr4A 98.305 59 1 0 5103 5161 497859169 497859111 2.850000e-18 104.0
34 TraesCS2B01G241800 chr4A 95.082 61 0 2 513 570 632933684 632933624 6.170000e-15 93.5
35 TraesCS2B01G241800 chr7B 93.641 629 22 7 5161 5773 587854005 587853379 0.000000e+00 924.0
36 TraesCS2B01G241800 chr7B 93.641 629 22 7 5161 5773 587871849 587871223 0.000000e+00 924.0
37 TraesCS2B01G241800 chr7B 93.482 629 23 6 5161 5773 587813758 587813132 0.000000e+00 918.0
38 TraesCS2B01G241800 chr7B 92.756 635 26 5 5161 5779 587702995 587702365 0.000000e+00 900.0
39 TraesCS2B01G241800 chr7B 89.100 633 52 6 5163 5779 29063121 29063752 0.000000e+00 771.0
40 TraesCS2B01G241800 chr7B 88.612 562 45 7 5235 5779 675753072 675753631 0.000000e+00 665.0
41 TraesCS2B01G241800 chr7B 95.946 148 6 0 4958 5105 587703127 587702980 2.080000e-59 241.0
42 TraesCS2B01G241800 chr7B 98.333 60 1 0 5102 5161 706775651 706775592 7.920000e-19 106.0
43 TraesCS2B01G241800 chr7B 90.141 71 5 2 5091 5161 11568480 11568412 2.220000e-14 91.6
44 TraesCS2B01G241800 chr6B 99.219 512 4 0 1 512 606677370 606676859 0.000000e+00 924.0
45 TraesCS2B01G241800 chr6B 99.219 512 4 0 1 512 606685451 606684940 0.000000e+00 924.0
46 TraesCS2B01G241800 chr6B 95.946 148 6 0 4958 5105 648683125 648682978 2.080000e-59 241.0
47 TraesCS2B01G241800 chr6B 95.862 145 6 0 4958 5102 29193929 29194073 9.680000e-58 235.0
48 TraesCS2B01G241800 chr6B 98.361 61 0 1 5101 5161 6001609 6001668 7.920000e-19 106.0
49 TraesCS2B01G241800 chr5D 93.228 635 21 5 5161 5779 553023400 553022772 0.000000e+00 915.0
50 TraesCS2B01G241800 chr5D 95.618 502 19 1 1596 2097 514012370 514012868 0.000000e+00 802.0
51 TraesCS2B01G241800 chr1D 92.598 635 29 11 5161 5779 325507813 325507181 0.000000e+00 896.0
52 TraesCS2B01G241800 chr1D 92.283 635 31 9 5161 5779 414900576 414899944 0.000000e+00 885.0
53 TraesCS2B01G241800 chr1D 95.270 148 7 0 4958 5105 414900708 414900561 9.680000e-58 235.0
54 TraesCS2B01G241800 chr7D 92.126 635 31 6 5161 5779 107051417 107052048 0.000000e+00 878.0
55 TraesCS2B01G241800 chr3B 92.101 633 25 9 5163 5779 770406515 770405892 0.000000e+00 869.0
56 TraesCS2B01G241800 chr3B 97.964 393 6 2 529 920 752217234 752217625 0.000000e+00 680.0
57 TraesCS2B01G241800 chr3B 84.472 161 11 1 5617 5763 715265588 715265428 4.670000e-31 147.0
58 TraesCS2B01G241800 chr3B 81.675 191 11 13 513 679 752217246 752217436 2.810000e-28 137.0
59 TraesCS2B01G241800 chr3B 91.089 101 7 2 633 731 752217284 752217384 1.010000e-27 135.0
60 TraesCS2B01G241800 chr3B 94.048 84 5 0 834 917 752212534 752212451 1.690000e-25 128.0
61 TraesCS2B01G241800 chr1A 97.423 388 10 0 529 916 555692115 555692502 0.000000e+00 662.0
62 TraesCS2B01G241800 chr1A 73.552 639 136 24 5163 5779 22257897 22257270 4.540000e-51 213.0
63 TraesCS2B01G241800 chr1A 81.675 191 11 13 513 679 555692127 555692317 2.810000e-28 137.0
64 TraesCS2B01G241800 chr1A 96.104 77 3 0 655 731 555692189 555692265 6.080000e-25 126.0
65 TraesCS2B01G241800 chr1A 91.566 83 7 0 834 916 555687441 555687359 1.320000e-21 115.0
66 TraesCS2B01G241800 chr6D 92.115 279 15 4 643 917 140317357 140317082 2.530000e-103 387.0
67 TraesCS2B01G241800 chr6D 95.556 90 3 1 834 922 140327447 140327536 6.040000e-30 143.0
68 TraesCS2B01G241800 chr6D 94.048 84 3 2 602 685 140317346 140317265 6.080000e-25 126.0
69 TraesCS2B01G241800 chr3D 86.774 310 39 1 3428 3735 61698433 61698742 1.540000e-90 344.0
70 TraesCS2B01G241800 chr3A 86.774 310 39 1 3428 3735 70723328 70723637 1.540000e-90 344.0
71 TraesCS2B01G241800 chr3A 95.270 148 7 0 4958 5105 34031261 34031408 9.680000e-58 235.0
72 TraesCS2B01G241800 chr1B 86.928 306 24 4 5488 5779 331580361 331580664 4.320000e-86 329.0
73 TraesCS2B01G241800 chr1B 95.270 148 7 0 4958 5105 670824592 670824445 9.680000e-58 235.0
74 TraesCS2B01G241800 chr1B 98.305 59 1 0 5103 5161 660675767 660675825 2.850000e-18 104.0
75 TraesCS2B01G241800 chr5B 98.276 58 1 0 5104 5161 24823382 24823325 1.020000e-17 102.0
76 TraesCS2B01G241800 chr7A 96.667 60 1 1 5102 5161 109265789 109265847 1.330000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G241800 chr2B 245789399 245795177 5778 True 10672.000000 10672 100.0000 1 5779 1 chr2B.!!$R2 5778
1 TraesCS2B01G241800 chr2B 245803015 245803526 511 True 929.000000 929 99.4140 1 512 1 chr2B.!!$R3 511
2 TraesCS2B01G241800 chr2B 404371788 404372302 514 False 924.000000 924 99.0290 1 515 1 chr2B.!!$F3 514
3 TraesCS2B01G241800 chr2B 245822685 245823337 652 True 416.000000 416 78.8110 1112 1743 1 chr2B.!!$R4 631
4 TraesCS2B01G241800 chr2B 244919100 244919741 641 True 252.000000 252 74.6950 1111 1737 1 chr2B.!!$R1 626
5 TraesCS2B01G241800 chr2A 203318047 203321955 3908 True 1357.250000 2736 91.9920 931 4810 4 chr2A.!!$R2 3879
6 TraesCS2B01G241800 chr2A 203328189 203328841 652 True 433.000000 433 79.2370 1112 1743 1 chr2A.!!$R1 631
7 TraesCS2B01G241800 chr2D 189385752 189389740 3988 True 1918.666667 2680 93.5780 913 4958 3 chr2D.!!$R6 4045
8 TraesCS2B01G241800 chr2D 352200685 352201314 629 True 924.000000 924 93.5130 5163 5779 1 chr2D.!!$R5 616
9 TraesCS2B01G241800 chr2D 189532086 189532728 642 True 422.000000 422 79.1020 1112 1734 1 chr2D.!!$R1 622
10 TraesCS2B01G241800 chr5A 403892061 403892572 511 False 929.000000 929 99.4140 1 512 1 chr5A.!!$F1 511
11 TraesCS2B01G241800 chr5A 70314801 70315312 511 True 924.000000 924 99.2190 1 512 1 chr5A.!!$R1 511
12 TraesCS2B01G241800 chr5A 592969350 592969861 511 False 924.000000 924 99.2190 1 512 1 chr5A.!!$F2 511
13 TraesCS2B01G241800 chr4A 625138294 625138806 512 True 926.000000 926 99.2200 1 513 1 chr4A.!!$R2 512
14 TraesCS2B01G241800 chr4A 653832746 653833257 511 False 924.000000 924 99.2190 1 512 1 chr4A.!!$F2 511
15 TraesCS2B01G241800 chr7B 587853379 587854005 626 True 924.000000 924 93.6410 5161 5773 1 chr7B.!!$R3 612
16 TraesCS2B01G241800 chr7B 587871223 587871849 626 True 924.000000 924 93.6410 5161 5773 1 chr7B.!!$R4 612
17 TraesCS2B01G241800 chr7B 587813132 587813758 626 True 918.000000 918 93.4820 5161 5773 1 chr7B.!!$R2 612
18 TraesCS2B01G241800 chr7B 29063121 29063752 631 False 771.000000 771 89.1000 5163 5779 1 chr7B.!!$F1 616
19 TraesCS2B01G241800 chr7B 675753072 675753631 559 False 665.000000 665 88.6120 5235 5779 1 chr7B.!!$F2 544
20 TraesCS2B01G241800 chr7B 587702365 587703127 762 True 570.500000 900 94.3510 4958 5779 2 chr7B.!!$R6 821
21 TraesCS2B01G241800 chr6B 606676859 606677370 511 True 924.000000 924 99.2190 1 512 1 chr6B.!!$R1 511
22 TraesCS2B01G241800 chr6B 606684940 606685451 511 True 924.000000 924 99.2190 1 512 1 chr6B.!!$R2 511
23 TraesCS2B01G241800 chr5D 553022772 553023400 628 True 915.000000 915 93.2280 5161 5779 1 chr5D.!!$R1 618
24 TraesCS2B01G241800 chr1D 325507181 325507813 632 True 896.000000 896 92.5980 5161 5779 1 chr1D.!!$R1 618
25 TraesCS2B01G241800 chr1D 414899944 414900708 764 True 560.000000 885 93.7765 4958 5779 2 chr1D.!!$R2 821
26 TraesCS2B01G241800 chr7D 107051417 107052048 631 False 878.000000 878 92.1260 5161 5779 1 chr7D.!!$F1 618
27 TraesCS2B01G241800 chr3B 770405892 770406515 623 True 869.000000 869 92.1010 5163 5779 1 chr3B.!!$R3 616
28 TraesCS2B01G241800 chr1A 22257270 22257897 627 True 213.000000 213 73.5520 5163 5779 1 chr1A.!!$R1 616


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 753 0.038310 GGGTGGTTGGGAGAGAAAGG 59.962 60.0 0.00 0.0 0.00 3.11 F
790 791 0.040425 CCCACCGCAAGTTTTTCTCG 60.040 55.0 0.00 0.0 0.00 4.04 F
871 872 0.041135 CGTCGGATCGCTTCCTAGTC 60.041 60.0 3.21 0.0 42.99 2.59 F
872 873 1.022735 GTCGGATCGCTTCCTAGTCA 58.977 55.0 3.21 0.0 42.99 3.41 F
2731 2798 0.459411 GAAGGAGAAGACCAGCGAGC 60.459 60.0 0.00 0.0 0.00 5.03 F
4500 4693 0.111061 TTCACATTGGGCTGCTCTGT 59.889 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 1975 1.016130 AGCATCAAAGGCACGAGTCG 61.016 55.000 11.85 11.85 0.00 4.18 R
2713 2780 1.188219 TGCTCGCTGGTCTTCTCCTT 61.188 55.000 0.00 0.00 0.00 3.36 R
2731 2798 3.189910 ACATACAATGTGCTTGCTCAGTG 59.810 43.478 18.89 18.89 43.01 3.66 R
2846 2913 3.292460 AGGAAGAAGTACTCCTCATCCG 58.708 50.000 11.38 0.00 0.00 4.18 R
4572 4765 0.179936 GCTTGGATGGAGACTGGAGG 59.820 60.000 0.00 0.00 0.00 4.30 R
5525 5727 1.532505 CGTGCTTTAGCCATGTCATGC 60.533 52.381 7.35 3.48 41.18 4.06 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
328 329 3.266772 TGGTAGATGCTTCCACCTCAAAT 59.733 43.478 16.22 0.00 32.04 2.32
437 438 3.117888 GGCTTAGTCAATCCCCATCTCAA 60.118 47.826 0.00 0.00 0.00 3.02
515 516 3.708631 CAGAACTAGGGATGTGACAGGAT 59.291 47.826 0.00 0.00 0.00 3.24
516 517 3.964031 AGAACTAGGGATGTGACAGGATC 59.036 47.826 0.00 0.00 0.00 3.36
517 518 3.697190 ACTAGGGATGTGACAGGATCT 57.303 47.619 0.00 0.00 0.00 2.75
518 519 3.571590 ACTAGGGATGTGACAGGATCTC 58.428 50.000 0.00 0.00 0.00 2.75
519 520 1.407936 AGGGATGTGACAGGATCTCG 58.592 55.000 0.00 0.00 0.00 4.04
520 521 0.249657 GGGATGTGACAGGATCTCGC 60.250 60.000 0.00 0.00 0.00 5.03
521 522 0.249657 GGATGTGACAGGATCTCGCC 60.250 60.000 0.00 0.00 0.00 5.54
522 523 0.596083 GATGTGACAGGATCTCGCCG 60.596 60.000 0.00 0.00 0.00 6.46
523 524 2.583593 GTGACAGGATCTCGCCGC 60.584 66.667 0.00 0.00 0.00 6.53
524 525 4.193334 TGACAGGATCTCGCCGCG 62.193 66.667 6.39 6.39 0.00 6.46
525 526 4.194720 GACAGGATCTCGCCGCGT 62.195 66.667 13.39 0.00 0.00 6.01
526 527 4.194720 ACAGGATCTCGCCGCGTC 62.195 66.667 13.39 2.81 0.00 5.19
551 552 2.892425 CGCAGGGGATCTCGTTGC 60.892 66.667 9.93 9.93 0.00 4.17
552 553 2.892425 GCAGGGGATCTCGTTGCG 60.892 66.667 5.12 0.00 0.00 4.85
553 554 2.579201 CAGGGGATCTCGTTGCGT 59.421 61.111 0.00 0.00 0.00 5.24
554 555 1.519455 CAGGGGATCTCGTTGCGTC 60.519 63.158 0.00 0.00 0.00 5.19
555 556 2.582498 GGGGATCTCGTTGCGTCG 60.582 66.667 0.00 0.00 0.00 5.12
556 557 2.582498 GGGATCTCGTTGCGTCGG 60.582 66.667 0.00 0.00 0.00 4.79
557 558 2.582498 GGATCTCGTTGCGTCGGG 60.582 66.667 0.00 0.00 0.00 5.14
558 559 3.255379 GATCTCGTTGCGTCGGGC 61.255 66.667 0.00 0.00 43.96 6.13
559 560 4.814294 ATCTCGTTGCGTCGGGCC 62.814 66.667 0.00 0.00 42.61 5.80
579 580 2.892425 CGCAGGGGATCTCGTTGC 60.892 66.667 9.93 9.93 0.00 4.17
580 581 2.892425 GCAGGGGATCTCGTTGCG 60.892 66.667 5.12 0.00 0.00 4.85
581 582 2.579201 CAGGGGATCTCGTTGCGT 59.421 61.111 0.00 0.00 0.00 5.24
582 583 1.519455 CAGGGGATCTCGTTGCGTC 60.519 63.158 0.00 0.00 0.00 5.19
583 584 2.582498 GGGGATCTCGTTGCGTCG 60.582 66.667 0.00 0.00 0.00 5.12
584 585 2.582498 GGGATCTCGTTGCGTCGG 60.582 66.667 0.00 0.00 0.00 4.79
585 586 2.582498 GGATCTCGTTGCGTCGGG 60.582 66.667 0.00 0.00 0.00 5.14
586 587 3.255379 GATCTCGTTGCGTCGGGC 61.255 66.667 0.00 0.00 43.96 6.13
587 588 4.814294 ATCTCGTTGCGTCGGGCC 62.814 66.667 0.00 0.00 42.61 5.80
616 617 4.899239 GGGGCCGATCTGTGCGAG 62.899 72.222 0.00 0.00 0.00 5.03
617 618 4.148825 GGGCCGATCTGTGCGAGT 62.149 66.667 0.00 0.00 0.00 4.18
618 619 2.583593 GGCCGATCTGTGCGAGTC 60.584 66.667 0.00 0.00 0.00 3.36
619 620 2.583593 GCCGATCTGTGCGAGTCC 60.584 66.667 0.00 0.00 0.00 3.85
620 621 2.278206 CCGATCTGTGCGAGTCCG 60.278 66.667 0.00 0.00 39.16 4.79
621 622 2.485582 CGATCTGTGCGAGTCCGT 59.514 61.111 0.00 0.00 38.24 4.69
622 623 1.583967 CGATCTGTGCGAGTCCGTC 60.584 63.158 0.00 0.00 38.24 4.79
630 631 4.813526 CGAGTCCGTCGTCGCCTG 62.814 72.222 0.00 0.00 44.20 4.85
631 632 4.477975 GAGTCCGTCGTCGCCTGG 62.478 72.222 0.00 0.00 35.54 4.45
662 663 2.049618 GCTCGCCTAGCCGATCTG 60.050 66.667 0.00 0.00 46.25 2.90
663 664 2.851071 GCTCGCCTAGCCGATCTGT 61.851 63.158 0.00 0.00 46.25 3.41
664 665 1.007964 CTCGCCTAGCCGATCTGTG 60.008 63.158 0.00 0.00 36.54 3.66
665 666 2.659897 CGCCTAGCCGATCTGTGC 60.660 66.667 0.00 0.00 0.00 4.57
666 667 2.659897 GCCTAGCCGATCTGTGCG 60.660 66.667 0.00 0.00 0.00 5.34
667 668 3.120105 CCTAGCCGATCTGTGCGA 58.880 61.111 0.00 0.00 0.00 5.10
668 669 1.007964 CCTAGCCGATCTGTGCGAG 60.008 63.158 0.00 0.00 0.00 5.03
669 670 1.729470 CCTAGCCGATCTGTGCGAGT 61.729 60.000 0.00 0.00 0.00 4.18
670 671 0.317436 CTAGCCGATCTGTGCGAGTC 60.317 60.000 0.00 0.00 0.00 3.36
671 672 2.048312 TAGCCGATCTGTGCGAGTCG 62.048 60.000 8.54 8.54 0.00 4.18
672 673 2.278206 CCGATCTGTGCGAGTCGG 60.278 66.667 15.52 0.00 46.26 4.79
673 674 2.951745 CGATCTGTGCGAGTCGGC 60.952 66.667 15.52 7.33 0.00 5.54
674 675 2.583593 GATCTGTGCGAGTCGGCC 60.584 66.667 15.52 0.00 0.00 6.13
675 676 4.498520 ATCTGTGCGAGTCGGCCG 62.499 66.667 22.12 22.12 0.00 6.13
715 716 3.842923 CTCGCCCAGCCGATCTGT 61.843 66.667 0.00 0.00 41.25 3.41
716 717 4.147449 TCGCCCAGCCGATCTGTG 62.147 66.667 0.00 0.00 41.25 3.66
719 720 4.147449 CCCAGCCGATCTGTGCGA 62.147 66.667 0.00 0.00 41.25 5.10
720 721 2.584418 CCAGCCGATCTGTGCGAG 60.584 66.667 0.00 0.00 41.25 5.03
721 722 2.182791 CAGCCGATCTGTGCGAGT 59.817 61.111 0.00 0.00 38.02 4.18
722 723 1.875813 CAGCCGATCTGTGCGAGTC 60.876 63.158 0.00 0.00 38.02 3.36
723 724 2.951745 GCCGATCTGTGCGAGTCG 60.952 66.667 8.54 8.54 0.00 4.18
724 725 2.278206 CCGATCTGTGCGAGTCGG 60.278 66.667 15.52 0.00 46.26 4.79
725 726 2.951745 CGATCTGTGCGAGTCGGC 60.952 66.667 15.52 7.33 0.00 5.54
726 727 2.583593 GATCTGTGCGAGTCGGCC 60.584 66.667 15.52 0.00 0.00 6.13
727 728 4.498520 ATCTGTGCGAGTCGGCCG 62.499 66.667 22.12 22.12 0.00 6.13
744 745 3.618750 GTCGTCGGGTGGTTGGGA 61.619 66.667 0.00 0.00 0.00 4.37
745 746 3.307906 TCGTCGGGTGGTTGGGAG 61.308 66.667 0.00 0.00 0.00 4.30
746 747 3.307906 CGTCGGGTGGTTGGGAGA 61.308 66.667 0.00 0.00 0.00 3.71
747 748 2.663196 GTCGGGTGGTTGGGAGAG 59.337 66.667 0.00 0.00 0.00 3.20
748 749 1.911766 GTCGGGTGGTTGGGAGAGA 60.912 63.158 0.00 0.00 0.00 3.10
749 750 1.152204 TCGGGTGGTTGGGAGAGAA 60.152 57.895 0.00 0.00 0.00 2.87
750 751 0.765135 TCGGGTGGTTGGGAGAGAAA 60.765 55.000 0.00 0.00 0.00 2.52
751 752 0.321653 CGGGTGGTTGGGAGAGAAAG 60.322 60.000 0.00 0.00 0.00 2.62
752 753 0.038310 GGGTGGTTGGGAGAGAAAGG 59.962 60.000 0.00 0.00 0.00 3.11
753 754 0.038310 GGTGGTTGGGAGAGAAAGGG 59.962 60.000 0.00 0.00 0.00 3.95
754 755 1.064825 GTGGTTGGGAGAGAAAGGGA 58.935 55.000 0.00 0.00 0.00 4.20
755 756 1.636003 GTGGTTGGGAGAGAAAGGGAT 59.364 52.381 0.00 0.00 0.00 3.85
756 757 1.635487 TGGTTGGGAGAGAAAGGGATG 59.365 52.381 0.00 0.00 0.00 3.51
757 758 1.064389 GGTTGGGAGAGAAAGGGATGG 60.064 57.143 0.00 0.00 0.00 3.51
758 759 1.064389 GTTGGGAGAGAAAGGGATGGG 60.064 57.143 0.00 0.00 0.00 4.00
759 760 0.421495 TGGGAGAGAAAGGGATGGGA 59.579 55.000 0.00 0.00 0.00 4.37
760 761 1.011293 TGGGAGAGAAAGGGATGGGAT 59.989 52.381 0.00 0.00 0.00 3.85
761 762 2.139382 GGGAGAGAAAGGGATGGGATT 58.861 52.381 0.00 0.00 0.00 3.01
762 763 3.312080 TGGGAGAGAAAGGGATGGGATTA 60.312 47.826 0.00 0.00 0.00 1.75
763 764 3.073209 GGGAGAGAAAGGGATGGGATTAC 59.927 52.174 0.00 0.00 0.00 1.89
764 765 3.073209 GGAGAGAAAGGGATGGGATTACC 59.927 52.174 0.00 0.00 40.81 2.85
765 766 3.977326 GAGAGAAAGGGATGGGATTACCT 59.023 47.826 0.00 0.00 41.11 3.08
766 767 4.384465 AGAGAAAGGGATGGGATTACCTT 58.616 43.478 0.00 0.00 44.79 3.50
786 787 3.336138 TTTTTCCCACCGCAAGTTTTT 57.664 38.095 0.00 0.00 0.00 1.94
787 788 2.588027 TTTCCCACCGCAAGTTTTTC 57.412 45.000 0.00 0.00 0.00 2.29
788 789 1.770294 TTCCCACCGCAAGTTTTTCT 58.230 45.000 0.00 0.00 0.00 2.52
789 790 1.314730 TCCCACCGCAAGTTTTTCTC 58.685 50.000 0.00 0.00 0.00 2.87
790 791 0.040425 CCCACCGCAAGTTTTTCTCG 60.040 55.000 0.00 0.00 0.00 4.04
791 792 0.661020 CCACCGCAAGTTTTTCTCGT 59.339 50.000 0.00 0.00 0.00 4.18
792 793 1.064952 CCACCGCAAGTTTTTCTCGTT 59.935 47.619 0.00 0.00 0.00 3.85
793 794 2.372350 CACCGCAAGTTTTTCTCGTTC 58.628 47.619 0.00 0.00 0.00 3.95
794 795 2.031683 CACCGCAAGTTTTTCTCGTTCT 59.968 45.455 0.00 0.00 0.00 3.01
795 796 2.287103 ACCGCAAGTTTTTCTCGTTCTC 59.713 45.455 0.00 0.00 0.00 2.87
796 797 2.550707 CGCAAGTTTTTCTCGTTCTCG 58.449 47.619 0.00 0.00 38.55 4.04
797 798 2.299170 GCAAGTTTTTCTCGTTCTCGC 58.701 47.619 0.00 0.00 36.96 5.03
798 799 2.550707 CAAGTTTTTCTCGTTCTCGCG 58.449 47.619 0.00 0.00 36.96 5.87
799 800 0.507358 AGTTTTTCTCGTTCTCGCGC 59.493 50.000 0.00 0.00 36.96 6.86
800 801 0.780996 GTTTTTCTCGTTCTCGCGCG 60.781 55.000 26.76 26.76 36.96 6.86
801 802 1.882682 TTTTTCTCGTTCTCGCGCGG 61.883 55.000 31.69 20.60 36.96 6.46
813 814 3.723348 GCGCGGCCTCGTTTCTTT 61.723 61.111 17.71 0.00 38.89 2.52
814 815 2.943653 CGCGGCCTCGTTTCTTTT 59.056 55.556 7.05 0.00 38.89 2.27
815 816 1.281656 CGCGGCCTCGTTTCTTTTT 59.718 52.632 7.05 0.00 38.89 1.94
834 835 3.872560 TTTCGTTTCCTTCTTTCTCGC 57.127 42.857 0.00 0.00 0.00 5.03
835 836 1.415374 TCGTTTCCTTCTTTCTCGCG 58.585 50.000 0.00 0.00 0.00 5.87
836 837 0.179248 CGTTTCCTTCTTTCTCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
837 838 0.179248 GTTTCCTTCTTTCTCGCGCG 60.179 55.000 26.76 26.76 0.00 6.86
838 839 1.289109 TTTCCTTCTTTCTCGCGCGG 61.289 55.000 31.69 20.60 0.00 6.46
839 840 2.126071 CCTTCTTTCTCGCGCGGA 60.126 61.111 31.69 22.67 0.00 5.54
840 841 2.445438 CCTTCTTTCTCGCGCGGAC 61.445 63.158 31.69 0.00 0.00 4.79
841 842 1.444553 CTTCTTTCTCGCGCGGACT 60.445 57.895 31.69 0.00 0.00 3.85
842 843 1.006571 TTCTTTCTCGCGCGGACTT 60.007 52.632 31.69 0.00 0.00 3.01
843 844 0.599204 TTCTTTCTCGCGCGGACTTT 60.599 50.000 31.69 0.00 0.00 2.66
844 845 0.599204 TCTTTCTCGCGCGGACTTTT 60.599 50.000 31.69 0.00 0.00 2.27
845 846 0.451135 CTTTCTCGCGCGGACTTTTG 60.451 55.000 31.69 10.62 0.00 2.44
846 847 2.438385 TTTCTCGCGCGGACTTTTGC 62.438 55.000 31.69 0.00 0.00 3.68
852 853 4.700365 GCGGACTTTTGCGGCCAC 62.700 66.667 2.24 0.00 36.99 5.01
853 854 4.383602 CGGACTTTTGCGGCCACG 62.384 66.667 2.24 0.00 44.63 4.94
854 855 3.284449 GGACTTTTGCGGCCACGT 61.284 61.111 2.24 0.00 43.45 4.49
855 856 2.251371 GACTTTTGCGGCCACGTC 59.749 61.111 2.24 0.00 43.45 4.34
856 857 3.573489 GACTTTTGCGGCCACGTCG 62.573 63.158 2.24 0.00 43.45 5.12
857 858 4.383602 CTTTTGCGGCCACGTCGG 62.384 66.667 2.24 0.00 43.45 4.79
858 859 4.912485 TTTTGCGGCCACGTCGGA 62.912 61.111 2.24 0.00 43.45 4.55
859 860 4.690719 TTTGCGGCCACGTCGGAT 62.691 61.111 2.24 0.00 43.45 4.18
864 865 4.814294 GGCCACGTCGGATCGCTT 62.814 66.667 0.00 0.00 36.56 4.68
865 866 3.255379 GCCACGTCGGATCGCTTC 61.255 66.667 8.04 0.00 36.56 3.86
866 867 2.582498 CCACGTCGGATCGCTTCC 60.582 66.667 0.00 0.00 41.59 3.46
867 868 2.490217 CACGTCGGATCGCTTCCT 59.510 61.111 0.00 0.00 42.99 3.36
868 869 1.721664 CCACGTCGGATCGCTTCCTA 61.722 60.000 0.00 0.00 42.99 2.94
869 870 0.317103 CACGTCGGATCGCTTCCTAG 60.317 60.000 0.00 0.00 42.99 3.02
870 871 0.747283 ACGTCGGATCGCTTCCTAGT 60.747 55.000 0.00 0.00 42.99 2.57
871 872 0.041135 CGTCGGATCGCTTCCTAGTC 60.041 60.000 3.21 0.00 42.99 2.59
872 873 1.022735 GTCGGATCGCTTCCTAGTCA 58.977 55.000 3.21 0.00 42.99 3.41
873 874 1.609555 GTCGGATCGCTTCCTAGTCAT 59.390 52.381 3.21 0.00 42.99 3.06
874 875 1.880675 TCGGATCGCTTCCTAGTCATC 59.119 52.381 3.21 0.00 42.99 2.92
875 876 1.609072 CGGATCGCTTCCTAGTCATCA 59.391 52.381 3.21 0.00 42.99 3.07
876 877 2.605823 CGGATCGCTTCCTAGTCATCAC 60.606 54.545 3.21 0.00 42.99 3.06
877 878 2.605823 GGATCGCTTCCTAGTCATCACG 60.606 54.545 0.00 0.00 41.78 4.35
878 879 1.460504 TCGCTTCCTAGTCATCACGT 58.539 50.000 0.00 0.00 0.00 4.49
879 880 2.635714 TCGCTTCCTAGTCATCACGTA 58.364 47.619 0.00 0.00 0.00 3.57
880 881 3.011818 TCGCTTCCTAGTCATCACGTAA 58.988 45.455 0.00 0.00 0.00 3.18
881 882 3.106672 CGCTTCCTAGTCATCACGTAAC 58.893 50.000 0.00 0.00 0.00 2.50
882 883 3.445857 GCTTCCTAGTCATCACGTAACC 58.554 50.000 0.00 0.00 0.00 2.85
883 884 3.130693 GCTTCCTAGTCATCACGTAACCT 59.869 47.826 0.00 0.00 0.00 3.50
884 885 4.381718 GCTTCCTAGTCATCACGTAACCTT 60.382 45.833 0.00 0.00 0.00 3.50
885 886 5.163581 GCTTCCTAGTCATCACGTAACCTTA 60.164 44.000 0.00 0.00 0.00 2.69
886 887 5.824904 TCCTAGTCATCACGTAACCTTAC 57.175 43.478 0.00 0.00 0.00 2.34
899 900 3.930634 AACCTTACGTAGAGCTTTCGT 57.069 42.857 14.07 14.07 40.78 3.85
900 901 5.869350 GTAACCTTACGTAGAGCTTTCGTA 58.131 41.667 12.48 12.48 38.69 3.43
901 902 4.612932 ACCTTACGTAGAGCTTTCGTAG 57.387 45.455 14.78 9.73 40.26 3.51
902 903 3.376546 ACCTTACGTAGAGCTTTCGTAGG 59.623 47.826 19.40 19.40 40.26 3.18
903 904 3.376546 CCTTACGTAGAGCTTTCGTAGGT 59.623 47.826 18.62 10.20 40.26 3.08
904 905 2.915738 ACGTAGAGCTTTCGTAGGTG 57.084 50.000 9.36 0.00 36.05 4.00
905 906 2.157738 ACGTAGAGCTTTCGTAGGTGT 58.842 47.619 9.36 0.00 36.05 4.16
906 907 3.338249 ACGTAGAGCTTTCGTAGGTGTA 58.662 45.455 9.36 0.00 36.05 2.90
907 908 3.373439 ACGTAGAGCTTTCGTAGGTGTAG 59.627 47.826 9.36 0.00 36.05 2.74
908 909 2.943449 AGAGCTTTCGTAGGTGTAGC 57.057 50.000 0.00 0.00 33.94 3.58
909 910 2.168496 AGAGCTTTCGTAGGTGTAGCA 58.832 47.619 0.00 0.00 33.94 3.49
910 911 2.761208 AGAGCTTTCGTAGGTGTAGCAT 59.239 45.455 0.00 0.00 33.94 3.79
911 912 3.195825 AGAGCTTTCGTAGGTGTAGCATT 59.804 43.478 0.00 0.00 33.94 3.56
912 913 4.401519 AGAGCTTTCGTAGGTGTAGCATTA 59.598 41.667 0.00 0.00 33.94 1.90
913 914 5.069251 AGAGCTTTCGTAGGTGTAGCATTAT 59.931 40.000 0.00 0.00 33.94 1.28
914 915 5.671493 AGCTTTCGTAGGTGTAGCATTATT 58.329 37.500 0.00 0.00 34.37 1.40
915 916 5.523916 AGCTTTCGTAGGTGTAGCATTATTG 59.476 40.000 0.00 0.00 34.37 1.90
916 917 5.522460 GCTTTCGTAGGTGTAGCATTATTGA 59.478 40.000 0.00 0.00 0.00 2.57
917 918 6.202954 GCTTTCGTAGGTGTAGCATTATTGAT 59.797 38.462 0.00 0.00 0.00 2.57
980 981 4.039488 TCTTCTTCTTTAACGGTAGCCACA 59.961 41.667 0.00 0.00 0.00 4.17
1011 1012 4.760047 GCGACCACCATGGCGACT 62.760 66.667 13.04 0.00 42.67 4.18
1056 1057 1.314534 CCGCCACAATCCTCATTGCA 61.315 55.000 0.00 0.00 43.03 4.08
1407 1411 1.371183 CCAGAACTTCCTCGCCACA 59.629 57.895 0.00 0.00 0.00 4.17
1835 1860 1.142688 ACCCCAGGAGGTGAATTGCT 61.143 55.000 0.00 0.00 39.24 3.91
1859 1884 5.655893 ACACAAAATTTCCTCAATTTGCG 57.344 34.783 0.00 0.00 43.20 4.85
1870 1895 6.150396 TCCTCAATTTGCGGTTTCTTTTAA 57.850 33.333 5.37 0.00 0.00 1.52
1903 1928 5.472137 ACACGTGTATGGCTTATTCAGTTTT 59.528 36.000 21.98 0.00 0.00 2.43
2032 2063 3.057806 CCGGTTAAAAATTCGAGGCAAGT 60.058 43.478 0.00 0.00 0.00 3.16
2034 2065 4.234574 GGTTAAAAATTCGAGGCAAGTGG 58.765 43.478 0.00 0.00 0.00 4.00
2042 2073 1.526575 CGAGGCAAGTGGGCAACATT 61.527 55.000 0.00 0.00 46.44 2.71
2121 2153 6.966751 AGGTCATTATCAGGATAATCCCATG 58.033 40.000 19.49 9.80 40.84 3.66
2134 2166 1.300931 CCCATGGCGATACAGACCG 60.301 63.158 6.09 0.00 0.00 4.79
2246 2308 6.038271 AGCATTCAACAGTCGGTTATATTTCC 59.962 38.462 0.00 0.00 37.72 3.13
2278 2340 4.778534 TTAGAAGCTAGCACTACACGTT 57.221 40.909 18.83 0.00 0.00 3.99
2280 2342 1.390463 GAAGCTAGCACTACACGTTGC 59.610 52.381 18.83 1.65 0.00 4.17
2321 2383 6.147821 AGTTAGTCCAAATCTCATGTTTGACG 59.852 38.462 8.44 0.00 38.51 4.35
2346 2408 6.532657 GCCATGATTTGTTTGGATTGTTAGAG 59.467 38.462 0.00 0.00 31.94 2.43
2434 2498 2.019984 CCAATCTGCACTAAGCTTCCC 58.980 52.381 0.00 0.00 45.94 3.97
2483 2550 2.769095 GACTGCAGGGGAAAGAGTCTAT 59.231 50.000 19.93 0.00 32.06 1.98
2486 2553 1.488393 GCAGGGGAAAGAGTCTATGCT 59.512 52.381 0.00 0.00 0.00 3.79
2530 2597 6.543465 TGATTGCAGCAAATGTATTAGCTACT 59.457 34.615 12.97 0.00 35.19 2.57
2534 2601 5.466728 GCAGCAAATGTATTAGCTACTAGCA 59.533 40.000 10.73 0.00 45.56 3.49
2575 2642 6.431198 TTTTGAGCCGTTTCTATGGTATTC 57.569 37.500 0.00 0.00 32.61 1.75
2657 2724 1.490069 TGGCTATTGTGCTGCCTATCA 59.510 47.619 0.00 0.00 46.23 2.15
2679 2746 2.294979 TGCTGCAATTCTGGCTATCAG 58.705 47.619 0.00 0.00 44.68 2.90
2713 2780 4.947883 TCTGTTATTTGAGGAGGAGGAGA 58.052 43.478 0.00 0.00 0.00 3.71
2731 2798 0.459411 GAAGGAGAAGACCAGCGAGC 60.459 60.000 0.00 0.00 0.00 5.03
2733 2800 1.446966 GGAGAAGACCAGCGAGCAC 60.447 63.158 0.00 0.00 0.00 4.40
2755 2822 5.003160 ACTGAGCAAGCACATTGTATGTTA 58.997 37.500 0.00 0.00 42.70 2.41
2795 2862 7.038302 ACAGTTTGAACTCATGAATAGGTAGGA 60.038 37.037 0.00 0.00 37.08 2.94
2817 2884 6.609616 AGGAAAGAAAACCAATGAACTTACCA 59.390 34.615 0.00 0.00 0.00 3.25
2919 2986 6.486253 TGAAATGATACACAACTCTTCTGC 57.514 37.500 0.00 0.00 0.00 4.26
2920 2987 5.120674 TGAAATGATACACAACTCTTCTGCG 59.879 40.000 0.00 0.00 0.00 5.18
2921 2988 3.660501 TGATACACAACTCTTCTGCGT 57.339 42.857 0.00 0.00 0.00 5.24
2922 2989 3.575630 TGATACACAACTCTTCTGCGTC 58.424 45.455 0.00 0.00 0.00 5.19
2923 2990 2.433868 TACACAACTCTTCTGCGTCC 57.566 50.000 0.00 0.00 0.00 4.79
2924 2991 0.464036 ACACAACTCTTCTGCGTCCA 59.536 50.000 0.00 0.00 0.00 4.02
2925 2992 1.070758 ACACAACTCTTCTGCGTCCAT 59.929 47.619 0.00 0.00 0.00 3.41
2926 2993 2.146342 CACAACTCTTCTGCGTCCATT 58.854 47.619 0.00 0.00 0.00 3.16
2927 2994 2.549754 CACAACTCTTCTGCGTCCATTT 59.450 45.455 0.00 0.00 0.00 2.32
2928 2995 2.808543 ACAACTCTTCTGCGTCCATTTC 59.191 45.455 0.00 0.00 0.00 2.17
2929 2996 2.100605 ACTCTTCTGCGTCCATTTCC 57.899 50.000 0.00 0.00 0.00 3.13
2930 2997 1.347707 ACTCTTCTGCGTCCATTTCCA 59.652 47.619 0.00 0.00 0.00 3.53
2931 2998 2.224523 ACTCTTCTGCGTCCATTTCCAA 60.225 45.455 0.00 0.00 0.00 3.53
2932 2999 2.813754 CTCTTCTGCGTCCATTTCCAAA 59.186 45.455 0.00 0.00 0.00 3.28
2933 3000 3.218453 TCTTCTGCGTCCATTTCCAAAA 58.782 40.909 0.00 0.00 0.00 2.44
2946 3013 5.234972 CCATTTCCAAAAACAACTCTTCTGC 59.765 40.000 0.00 0.00 0.00 4.26
3010 3077 5.643777 CGAACTGAACCATTAGGAGTTGAAT 59.356 40.000 0.00 0.00 38.69 2.57
3011 3078 6.183360 CGAACTGAACCATTAGGAGTTGAATC 60.183 42.308 0.00 0.00 38.69 2.52
3012 3079 6.380079 ACTGAACCATTAGGAGTTGAATCT 57.620 37.500 0.00 0.00 38.69 2.40
3013 3080 7.496346 ACTGAACCATTAGGAGTTGAATCTA 57.504 36.000 0.00 0.00 38.69 1.98
3015 3082 9.213777 ACTGAACCATTAGGAGTTGAATCTATA 57.786 33.333 0.00 0.00 38.69 1.31
3016 3083 9.703892 CTGAACCATTAGGAGTTGAATCTATAG 57.296 37.037 0.00 0.00 38.69 1.31
3017 3084 8.150945 TGAACCATTAGGAGTTGAATCTATAGC 58.849 37.037 0.00 0.00 38.69 2.97
3018 3085 7.010339 ACCATTAGGAGTTGAATCTATAGCC 57.990 40.000 0.00 0.00 38.69 3.93
3021 3096 6.672266 TTAGGAGTTGAATCTATAGCCCTG 57.328 41.667 0.00 0.00 0.00 4.45
3026 3101 7.293535 AGGAGTTGAATCTATAGCCCTGTTAAT 59.706 37.037 0.00 0.00 0.00 1.40
3028 3103 7.227156 AGTTGAATCTATAGCCCTGTTAATGG 58.773 38.462 0.00 0.00 0.00 3.16
3033 3108 7.574021 ATCTATAGCCCTGTTAATGGAATGA 57.426 36.000 0.00 0.00 0.00 2.57
3060 3135 7.399245 CCTAGTAGGGAAGATTAGCATCTAC 57.601 44.000 8.50 0.00 39.00 2.59
3061 3136 7.179269 CCTAGTAGGGAAGATTAGCATCTACT 58.821 42.308 8.50 0.00 39.00 2.57
3062 3137 7.338449 CCTAGTAGGGAAGATTAGCATCTACTC 59.662 44.444 8.50 0.00 39.00 2.59
3063 3138 6.014012 AGTAGGGAAGATTAGCATCTACTCC 58.986 44.000 0.00 0.00 39.00 3.85
3064 3139 4.820775 AGGGAAGATTAGCATCTACTCCA 58.179 43.478 6.95 0.00 39.00 3.86
3065 3140 5.410602 AGGGAAGATTAGCATCTACTCCAT 58.589 41.667 6.95 0.00 39.00 3.41
3066 3141 5.483583 AGGGAAGATTAGCATCTACTCCATC 59.516 44.000 6.95 0.00 39.00 3.51
3067 3142 5.337975 GGGAAGATTAGCATCTACTCCATCC 60.338 48.000 6.95 1.34 39.00 3.51
3068 3143 5.247110 GGAAGATTAGCATCTACTCCATCCA 59.753 44.000 1.60 0.00 39.00 3.41
3069 3144 5.736951 AGATTAGCATCTACTCCATCCAC 57.263 43.478 0.00 0.00 38.06 4.02
3070 3145 4.530161 AGATTAGCATCTACTCCATCCACC 59.470 45.833 0.00 0.00 38.06 4.61
3071 3146 2.180946 AGCATCTACTCCATCCACCA 57.819 50.000 0.00 0.00 0.00 4.17
3072 3147 2.481441 AGCATCTACTCCATCCACCAA 58.519 47.619 0.00 0.00 0.00 3.67
3073 3148 2.846206 AGCATCTACTCCATCCACCAAA 59.154 45.455 0.00 0.00 0.00 3.28
3074 3149 3.266772 AGCATCTACTCCATCCACCAAAA 59.733 43.478 0.00 0.00 0.00 2.44
3075 3150 4.079558 AGCATCTACTCCATCCACCAAAAT 60.080 41.667 0.00 0.00 0.00 1.82
3076 3151 5.132648 AGCATCTACTCCATCCACCAAAATA 59.867 40.000 0.00 0.00 0.00 1.40
3077 3152 6.006449 GCATCTACTCCATCCACCAAAATAT 58.994 40.000 0.00 0.00 0.00 1.28
3078 3153 7.017551 AGCATCTACTCCATCCACCAAAATATA 59.982 37.037 0.00 0.00 0.00 0.86
3079 3154 7.665559 GCATCTACTCCATCCACCAAAATATAA 59.334 37.037 0.00 0.00 0.00 0.98
3080 3155 9.224267 CATCTACTCCATCCACCAAAATATAAG 57.776 37.037 0.00 0.00 0.00 1.73
3081 3156 8.561536 TCTACTCCATCCACCAAAATATAAGA 57.438 34.615 0.00 0.00 0.00 2.10
3082 3157 8.429641 TCTACTCCATCCACCAAAATATAAGAC 58.570 37.037 0.00 0.00 0.00 3.01
3083 3158 6.055588 ACTCCATCCACCAAAATATAAGACG 58.944 40.000 0.00 0.00 0.00 4.18
3084 3159 5.996644 TCCATCCACCAAAATATAAGACGT 58.003 37.500 0.00 0.00 0.00 4.34
3085 3160 6.419791 TCCATCCACCAAAATATAAGACGTT 58.580 36.000 0.00 0.00 0.00 3.99
3086 3161 6.887545 TCCATCCACCAAAATATAAGACGTTT 59.112 34.615 0.00 0.00 0.00 3.60
3087 3162 7.394923 TCCATCCACCAAAATATAAGACGTTTT 59.605 33.333 0.00 0.00 0.00 2.43
3088 3163 8.032451 CCATCCACCAAAATATAAGACGTTTTT 58.968 33.333 0.00 0.00 0.00 1.94
3089 3164 8.859156 CATCCACCAAAATATAAGACGTTTTTG 58.141 33.333 11.96 11.96 38.28 2.44
3090 3165 6.864165 TCCACCAAAATATAAGACGTTTTTGC 59.136 34.615 13.03 0.00 37.60 3.68
3091 3166 6.642950 CCACCAAAATATAAGACGTTTTTGCA 59.357 34.615 13.03 0.00 37.60 4.08
3092 3167 7.358848 CCACCAAAATATAAGACGTTTTTGCAC 60.359 37.037 13.03 0.00 37.60 4.57
3093 3168 7.381139 CACCAAAATATAAGACGTTTTTGCACT 59.619 33.333 13.03 0.00 37.60 4.40
3094 3169 7.923878 ACCAAAATATAAGACGTTTTTGCACTT 59.076 29.630 13.03 2.75 37.60 3.16
3095 3170 9.400638 CCAAAATATAAGACGTTTTTGCACTTA 57.599 29.630 13.03 4.68 37.60 2.24
3104 3179 9.691362 AAGACGTTTTTGCACTTATATTTTGAT 57.309 25.926 0.00 0.00 0.00 2.57
3107 3182 9.900710 ACGTTTTTGCACTTATATTTTGATACA 57.099 25.926 0.00 0.00 0.00 2.29
3112 3187 9.461312 TTTGCACTTATATTTTGATACAGAGGT 57.539 29.630 0.00 0.00 0.00 3.85
3114 3189 9.764363 TGCACTTATATTTTGATACAGAGGTAG 57.236 33.333 0.00 0.00 31.88 3.18
3281 3365 5.186603 TCTCTATGTCTGTGTGCTTTCTGAT 59.813 40.000 0.00 0.00 0.00 2.90
3309 3393 9.123709 GATTCGACTAATCATGAAGACATAGAC 57.876 37.037 0.00 0.00 43.10 2.59
3350 3434 4.642445 TTGATCTATCAACCTTACGCGA 57.358 40.909 15.93 0.00 41.51 5.87
3375 3459 3.189287 CGACAAATAACTTTGCTGAGGCT 59.811 43.478 0.00 0.00 44.63 4.58
3423 3507 3.626217 GTGCAGTTTATAAGGTACCAGCC 59.374 47.826 15.94 0.00 0.00 4.85
3424 3508 3.264706 TGCAGTTTATAAGGTACCAGCCA 59.735 43.478 15.94 0.00 0.00 4.75
3425 3509 4.080015 TGCAGTTTATAAGGTACCAGCCAT 60.080 41.667 15.94 3.84 0.00 4.40
3426 3510 5.131308 TGCAGTTTATAAGGTACCAGCCATA 59.869 40.000 15.94 2.85 0.00 2.74
3427 3511 5.469084 GCAGTTTATAAGGTACCAGCCATAC 59.531 44.000 15.94 5.43 0.00 2.39
3439 3523 2.303022 CCAGCCATACCATACCGATTCT 59.697 50.000 0.00 0.00 0.00 2.40
3443 3527 5.639506 CAGCCATACCATACCGATTCTTTAG 59.360 44.000 0.00 0.00 0.00 1.85
3447 3531 6.092670 CCATACCATACCGATTCTTTAGCATG 59.907 42.308 0.00 0.00 0.00 4.06
3794 3886 9.148879 TCCTAAGGAATTATTTTGTCCAAAACA 57.851 29.630 7.31 0.00 42.32 2.83
3795 3887 9.203421 CCTAAGGAATTATTTTGTCCAAAACAC 57.797 33.333 7.31 0.00 42.32 3.32
3796 3888 9.981114 CTAAGGAATTATTTTGTCCAAAACACT 57.019 29.630 7.31 0.00 42.32 3.55
3798 3890 9.981114 AAGGAATTATTTTGTCCAAAACACTAG 57.019 29.630 7.31 0.00 42.32 2.57
3799 3891 8.585018 AGGAATTATTTTGTCCAAAACACTAGG 58.415 33.333 7.31 0.00 42.32 3.02
3800 3892 7.817478 GGAATTATTTTGTCCAAAACACTAGGG 59.183 37.037 7.31 0.00 42.32 3.53
3801 3893 7.849322 ATTATTTTGTCCAAAACACTAGGGT 57.151 32.000 7.31 0.00 42.32 4.34
3821 3920 5.897250 AGGGTGTTGGAAAACTGAACTTTAT 59.103 36.000 0.00 0.00 0.00 1.40
3855 3954 4.038271 TCTTGTTCAAATGCCAGATCCT 57.962 40.909 0.00 0.00 0.00 3.24
3863 3962 4.019051 TCAAATGCCAGATCCTGAGAGAAA 60.019 41.667 0.00 0.00 32.44 2.52
4094 4193 4.378046 CCGTGTTGTTGGAACATAGTAAGC 60.378 45.833 0.00 0.00 39.30 3.09
4217 4324 6.812160 GCGGTCACTATTCTATAAAATCGGAT 59.188 38.462 0.00 0.00 0.00 4.18
4310 4417 3.065019 GAGTCTGTCGATCTCTTGAGC 57.935 52.381 0.00 0.00 0.00 4.26
4322 4429 2.492484 TCTCTTGAGCCTCGTAAGTTCC 59.508 50.000 0.00 0.00 39.48 3.62
4342 4449 1.277273 CTGTGCTGATCCTGAACTCCA 59.723 52.381 0.00 0.00 0.00 3.86
4345 4452 3.133542 TGTGCTGATCCTGAACTCCATAG 59.866 47.826 0.00 0.00 0.00 2.23
4346 4453 3.133721 GTGCTGATCCTGAACTCCATAGT 59.866 47.826 0.00 0.00 37.65 2.12
4353 4460 8.603898 TGATCCTGAACTCCATAGTTAAGTAA 57.396 34.615 0.00 0.00 46.09 2.24
4382 4575 8.721478 TCTGTGAAAAATACTGAGTGCTAATTC 58.279 33.333 0.00 0.00 0.00 2.17
4435 4628 5.694006 GGGACAATTTCAGAGATCATAGACG 59.306 44.000 0.00 0.00 0.00 4.18
4455 4648 1.859703 GCATCTCTGAGAAGTCATGCG 59.140 52.381 12.00 0.00 28.13 4.73
4500 4693 0.111061 TTCACATTGGGCTGCTCTGT 59.889 50.000 0.00 0.00 0.00 3.41
4572 4765 2.334838 CTTAGCAGTAACACCGTGTCC 58.665 52.381 4.23 0.00 0.00 4.02
4626 4819 1.148157 CCAAGAGCGGCACATACTCG 61.148 60.000 1.45 0.00 35.56 4.18
4655 4848 2.106166 ACTCGGAGTCGTCATACCCTAT 59.894 50.000 4.45 0.00 37.69 2.57
4750 4943 3.157087 TGAAGGAAGGATTGCAAAGGAC 58.843 45.455 1.71 0.00 39.77 3.85
4827 5020 9.352784 TGCATTTTTAGTATTTTTCTCCATTCG 57.647 29.630 0.00 0.00 0.00 3.34
4830 5023 5.728351 TTAGTATTTTTCTCCATTCGCCG 57.272 39.130 0.00 0.00 0.00 6.46
4831 5024 3.869065 AGTATTTTTCTCCATTCGCCGA 58.131 40.909 0.00 0.00 0.00 5.54
4833 5026 1.448985 TTTTTCTCCATTCGCCGAGG 58.551 50.000 0.00 0.00 0.00 4.63
4834 5027 1.024579 TTTTCTCCATTCGCCGAGGC 61.025 55.000 3.59 3.59 37.85 4.70
4835 5028 2.178876 TTTCTCCATTCGCCGAGGCA 62.179 55.000 15.03 0.00 42.06 4.75
4836 5029 2.578163 TTCTCCATTCGCCGAGGCAG 62.578 60.000 15.03 7.22 42.06 4.85
4839 5032 2.753966 CCATTCGCCGAGGCAGTTG 61.754 63.158 15.03 7.45 42.06 3.16
4850 5043 4.142381 GCCGAGGCAGTTGATTTCTTATTT 60.142 41.667 9.58 0.00 41.49 1.40
4931 5125 6.209589 GGAAAATTCTAGAACAAAGGCTCCTT 59.790 38.462 7.48 0.00 37.98 3.36
4938 5132 5.248380 AGAACAAAGGCTCCTTCTTGTAT 57.752 39.130 1.05 0.00 34.84 2.29
4940 5134 6.410540 AGAACAAAGGCTCCTTCTTGTATAG 58.589 40.000 1.05 0.00 34.84 1.31
4941 5135 5.763876 ACAAAGGCTCCTTCTTGTATAGT 57.236 39.130 1.05 0.00 34.84 2.12
4942 5136 6.128138 ACAAAGGCTCCTTCTTGTATAGTT 57.872 37.500 1.05 0.00 34.84 2.24
4943 5137 7.253905 ACAAAGGCTCCTTCTTGTATAGTTA 57.746 36.000 1.05 0.00 34.84 2.24
4944 5138 7.862675 ACAAAGGCTCCTTCTTGTATAGTTAT 58.137 34.615 1.05 0.00 34.84 1.89
4945 5139 7.770897 ACAAAGGCTCCTTCTTGTATAGTTATG 59.229 37.037 1.05 0.00 34.84 1.90
4946 5140 7.439108 AAGGCTCCTTCTTGTATAGTTATGT 57.561 36.000 0.00 0.00 0.00 2.29
4947 5141 8.548880 AAGGCTCCTTCTTGTATAGTTATGTA 57.451 34.615 0.00 0.00 0.00 2.29
4948 5142 8.728596 AGGCTCCTTCTTGTATAGTTATGTAT 57.271 34.615 0.00 0.00 0.00 2.29
4949 5143 9.160412 AGGCTCCTTCTTGTATAGTTATGTATT 57.840 33.333 0.00 0.00 0.00 1.89
4950 5144 9.209175 GGCTCCTTCTTGTATAGTTATGTATTG 57.791 37.037 0.00 0.00 0.00 1.90
4951 5145 9.765795 GCTCCTTCTTGTATAGTTATGTATTGT 57.234 33.333 0.00 0.00 0.00 2.71
4989 5183 4.827304 TTGACACAAATTGCTCATTCGA 57.173 36.364 0.00 0.00 0.00 3.71
5045 5239 2.104967 CGACACATACTGGAAGGGGTA 58.895 52.381 0.00 0.00 39.30 3.69
5089 5283 6.119240 TCATGAGATCCACTTGAAGAAACT 57.881 37.500 0.00 0.00 0.00 2.66
5090 5284 5.936372 TCATGAGATCCACTTGAAGAAACTG 59.064 40.000 0.00 0.00 0.00 3.16
5091 5285 4.645535 TGAGATCCACTTGAAGAAACTGG 58.354 43.478 0.00 0.00 0.00 4.00
5092 5286 4.347876 TGAGATCCACTTGAAGAAACTGGA 59.652 41.667 0.00 1.55 35.84 3.86
5093 5287 5.013495 TGAGATCCACTTGAAGAAACTGGAT 59.987 40.000 13.08 13.08 41.54 3.41
5094 5288 5.251764 AGATCCACTTGAAGAAACTGGATG 58.748 41.667 16.81 0.00 39.94 3.51
5095 5289 3.754965 TCCACTTGAAGAAACTGGATGG 58.245 45.455 0.00 0.00 28.87 3.51
5096 5290 2.821969 CCACTTGAAGAAACTGGATGGG 59.178 50.000 0.00 0.00 0.00 4.00
5097 5291 2.821969 CACTTGAAGAAACTGGATGGGG 59.178 50.000 0.00 0.00 0.00 4.96
5098 5292 2.447047 ACTTGAAGAAACTGGATGGGGT 59.553 45.455 0.00 0.00 0.00 4.95
5099 5293 3.117131 ACTTGAAGAAACTGGATGGGGTT 60.117 43.478 0.00 0.00 0.00 4.11
5100 5294 4.105697 ACTTGAAGAAACTGGATGGGGTTA 59.894 41.667 0.00 0.00 0.00 2.85
5101 5295 4.946160 TGAAGAAACTGGATGGGGTTAT 57.054 40.909 0.00 0.00 0.00 1.89
5102 5296 5.269554 TGAAGAAACTGGATGGGGTTATT 57.730 39.130 0.00 0.00 0.00 1.40
5103 5297 5.650283 TGAAGAAACTGGATGGGGTTATTT 58.350 37.500 0.00 0.00 0.00 1.40
5104 5298 6.081356 TGAAGAAACTGGATGGGGTTATTTT 58.919 36.000 0.00 0.00 0.00 1.82
5105 5299 6.556874 TGAAGAAACTGGATGGGGTTATTTTT 59.443 34.615 0.00 0.00 0.00 1.94
5128 5322 4.492494 TTTCGAAAAGGAGGTATACCCC 57.508 45.455 18.65 17.91 36.42 4.95
5129 5323 2.401568 TCGAAAAGGAGGTATACCCCC 58.598 52.381 18.65 16.61 36.42 5.40
5130 5324 1.069668 CGAAAAGGAGGTATACCCCCG 59.930 57.143 18.65 13.00 36.42 5.73
5131 5325 1.419012 GAAAAGGAGGTATACCCCCGG 59.581 57.143 18.65 0.00 36.42 5.73
5132 5326 1.058428 AAAGGAGGTATACCCCCGGC 61.058 60.000 18.65 3.34 36.42 6.13
5133 5327 2.926779 GGAGGTATACCCCCGGCC 60.927 72.222 18.65 8.67 36.42 6.13
5134 5328 2.203466 GAGGTATACCCCCGGCCT 59.797 66.667 18.65 0.00 36.42 5.19
5135 5329 1.912264 GAGGTATACCCCCGGCCTC 60.912 68.421 18.65 6.31 38.89 4.70
5136 5330 2.203466 GGTATACCCCCGGCCTCT 59.797 66.667 11.17 0.00 0.00 3.69
5137 5331 2.214920 GGTATACCCCCGGCCTCTG 61.215 68.421 11.17 0.00 0.00 3.35
5138 5332 2.525877 TATACCCCCGGCCTCTGC 60.526 66.667 0.00 0.00 0.00 4.26
5139 5333 3.398365 TATACCCCCGGCCTCTGCA 62.398 63.158 0.00 0.00 40.13 4.41
5140 5334 2.689573 TATACCCCCGGCCTCTGCAT 62.690 60.000 0.00 0.00 40.13 3.96
5143 5337 4.247380 CCCCGGCCTCTGCATCTC 62.247 72.222 0.00 0.00 40.13 2.75
5144 5338 3.160047 CCCGGCCTCTGCATCTCT 61.160 66.667 0.00 0.00 40.13 3.10
5145 5339 2.739996 CCCGGCCTCTGCATCTCTT 61.740 63.158 0.00 0.00 40.13 2.85
5146 5340 1.523258 CCGGCCTCTGCATCTCTTG 60.523 63.158 0.00 0.00 40.13 3.02
5147 5341 1.519246 CGGCCTCTGCATCTCTTGA 59.481 57.895 0.00 0.00 40.13 3.02
5148 5342 0.106335 CGGCCTCTGCATCTCTTGAT 59.894 55.000 0.00 0.00 40.13 2.57
5157 5351 2.826979 CATCTCTTGATGCACACAGC 57.173 50.000 0.00 0.00 42.83 4.40
5158 5352 1.400846 CATCTCTTGATGCACACAGCC 59.599 52.381 0.00 0.00 42.83 4.85
5159 5353 0.397564 TCTCTTGATGCACACAGCCA 59.602 50.000 0.00 0.00 44.83 4.75
5206 5400 5.234543 GGACTTTGAGAAGGCGTATGATAAC 59.765 44.000 0.00 0.00 42.17 1.89
5214 5408 7.031226 AGAAGGCGTATGATAACGTAAAGTA 57.969 36.000 0.00 0.00 44.64 2.24
5362 5557 1.883275 CACATAAGGGGTTGCGACAAA 59.117 47.619 6.39 0.00 0.00 2.83
5365 5560 0.766131 TAAGGGGTTGCGACAAAGGA 59.234 50.000 6.39 0.00 0.00 3.36
5525 5727 7.331440 GCTGATGACACTATTCTATTCATGGAG 59.669 40.741 0.00 0.00 0.00 3.86
5540 5742 2.804986 TGGAGCATGACATGGCTAAA 57.195 45.000 17.03 4.32 41.22 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
532 533 4.162690 AACGAGATCCCCTGCGGC 62.163 66.667 0.00 0.00 0.00 6.53
533 534 2.202932 CAACGAGATCCCCTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
534 535 2.892425 GCAACGAGATCCCCTGCG 60.892 66.667 0.00 0.00 0.00 5.18
535 536 2.892425 CGCAACGAGATCCCCTGC 60.892 66.667 0.00 0.00 0.00 4.85
536 537 1.519455 GACGCAACGAGATCCCCTG 60.519 63.158 0.00 0.00 0.00 4.45
537 538 2.893398 GACGCAACGAGATCCCCT 59.107 61.111 0.00 0.00 0.00 4.79
538 539 2.582498 CGACGCAACGAGATCCCC 60.582 66.667 0.00 0.00 35.09 4.81
539 540 2.582498 CCGACGCAACGAGATCCC 60.582 66.667 0.00 0.00 35.09 3.85
540 541 2.582498 CCCGACGCAACGAGATCC 60.582 66.667 0.00 0.00 35.09 3.36
541 542 3.255379 GCCCGACGCAACGAGATC 61.255 66.667 0.00 0.00 37.47 2.75
542 543 4.814294 GGCCCGACGCAACGAGAT 62.814 66.667 0.00 0.00 40.31 2.75
560 561 4.162690 AACGAGATCCCCTGCGGC 62.163 66.667 0.00 0.00 0.00 6.53
561 562 2.202932 CAACGAGATCCCCTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
562 563 2.892425 GCAACGAGATCCCCTGCG 60.892 66.667 0.00 0.00 0.00 5.18
563 564 2.892425 CGCAACGAGATCCCCTGC 60.892 66.667 0.00 0.00 0.00 4.85
564 565 1.519455 GACGCAACGAGATCCCCTG 60.519 63.158 0.00 0.00 0.00 4.45
565 566 2.893398 GACGCAACGAGATCCCCT 59.107 61.111 0.00 0.00 0.00 4.79
566 567 2.582498 CGACGCAACGAGATCCCC 60.582 66.667 0.00 0.00 35.09 4.81
567 568 2.582498 CCGACGCAACGAGATCCC 60.582 66.667 0.00 0.00 35.09 3.85
568 569 2.582498 CCCGACGCAACGAGATCC 60.582 66.667 0.00 0.00 35.09 3.36
569 570 3.255379 GCCCGACGCAACGAGATC 61.255 66.667 0.00 0.00 37.47 2.75
570 571 4.814294 GGCCCGACGCAACGAGAT 62.814 66.667 0.00 0.00 40.31 2.75
599 600 4.899239 CTCGCACAGATCGGCCCC 62.899 72.222 0.00 0.00 0.00 5.80
600 601 4.148825 ACTCGCACAGATCGGCCC 62.149 66.667 0.00 0.00 0.00 5.80
601 602 2.583593 GACTCGCACAGATCGGCC 60.584 66.667 0.00 0.00 0.00 6.13
602 603 2.583593 GGACTCGCACAGATCGGC 60.584 66.667 0.00 0.00 0.00 5.54
603 604 2.278206 CGGACTCGCACAGATCGG 60.278 66.667 0.00 0.00 0.00 4.18
604 605 1.583967 GACGGACTCGCACAGATCG 60.584 63.158 0.00 0.00 40.63 3.69
605 606 1.583967 CGACGGACTCGCACAGATC 60.584 63.158 0.00 0.00 40.63 2.75
606 607 2.485582 CGACGGACTCGCACAGAT 59.514 61.111 0.00 0.00 40.63 2.90
614 615 4.477975 CCAGGCGACGACGGACTC 62.478 72.222 9.67 0.00 40.15 3.36
646 647 1.007964 CACAGATCGGCTAGGCGAG 60.008 63.158 38.73 29.31 0.00 5.03
647 648 3.120105 CACAGATCGGCTAGGCGA 58.880 61.111 38.63 38.63 0.00 5.54
648 649 2.659897 GCACAGATCGGCTAGGCG 60.660 66.667 31.00 31.00 0.00 5.52
649 650 2.659897 CGCACAGATCGGCTAGGC 60.660 66.667 6.15 6.15 0.00 3.93
650 651 1.007964 CTCGCACAGATCGGCTAGG 60.008 63.158 0.00 0.00 0.00 3.02
651 652 0.317436 GACTCGCACAGATCGGCTAG 60.317 60.000 6.93 6.93 0.00 3.42
652 653 1.728069 GACTCGCACAGATCGGCTA 59.272 57.895 0.00 0.00 0.00 3.93
653 654 2.492090 GACTCGCACAGATCGGCT 59.508 61.111 0.00 0.00 0.00 5.52
654 655 2.951745 CGACTCGCACAGATCGGC 60.952 66.667 0.00 0.00 0.00 5.54
655 656 2.278206 CCGACTCGCACAGATCGG 60.278 66.667 0.00 0.00 40.67 4.18
656 657 2.951745 GCCGACTCGCACAGATCG 60.952 66.667 0.00 0.00 33.11 3.69
657 658 2.583593 GGCCGACTCGCACAGATC 60.584 66.667 0.00 0.00 0.00 2.75
658 659 4.498520 CGGCCGACTCGCACAGAT 62.499 66.667 24.07 0.00 0.00 2.90
705 706 2.492090 GACTCGCACAGATCGGCT 59.508 61.111 0.00 0.00 0.00 5.52
706 707 2.951745 CGACTCGCACAGATCGGC 60.952 66.667 0.00 0.00 0.00 5.54
707 708 2.278206 CCGACTCGCACAGATCGG 60.278 66.667 0.00 0.00 40.67 4.18
708 709 2.951745 GCCGACTCGCACAGATCG 60.952 66.667 0.00 0.00 33.11 3.69
709 710 2.583593 GGCCGACTCGCACAGATC 60.584 66.667 0.00 0.00 0.00 2.75
710 711 4.498520 CGGCCGACTCGCACAGAT 62.499 66.667 24.07 0.00 0.00 2.90
727 728 3.584868 CTCCCAACCACCCGACGAC 62.585 68.421 0.00 0.00 0.00 4.34
728 729 3.307906 CTCCCAACCACCCGACGA 61.308 66.667 0.00 0.00 0.00 4.20
729 730 3.296709 CTCTCCCAACCACCCGACG 62.297 68.421 0.00 0.00 0.00 5.12
730 731 1.477685 TTCTCTCCCAACCACCCGAC 61.478 60.000 0.00 0.00 0.00 4.79
731 732 0.765135 TTTCTCTCCCAACCACCCGA 60.765 55.000 0.00 0.00 0.00 5.14
732 733 0.321653 CTTTCTCTCCCAACCACCCG 60.322 60.000 0.00 0.00 0.00 5.28
733 734 0.038310 CCTTTCTCTCCCAACCACCC 59.962 60.000 0.00 0.00 0.00 4.61
734 735 0.038310 CCCTTTCTCTCCCAACCACC 59.962 60.000 0.00 0.00 0.00 4.61
735 736 1.064825 TCCCTTTCTCTCCCAACCAC 58.935 55.000 0.00 0.00 0.00 4.16
736 737 1.635487 CATCCCTTTCTCTCCCAACCA 59.365 52.381 0.00 0.00 0.00 3.67
737 738 1.064389 CCATCCCTTTCTCTCCCAACC 60.064 57.143 0.00 0.00 0.00 3.77
738 739 1.064389 CCCATCCCTTTCTCTCCCAAC 60.064 57.143 0.00 0.00 0.00 3.77
739 740 1.203557 TCCCATCCCTTTCTCTCCCAA 60.204 52.381 0.00 0.00 0.00 4.12
740 741 0.421495 TCCCATCCCTTTCTCTCCCA 59.579 55.000 0.00 0.00 0.00 4.37
741 742 1.826447 ATCCCATCCCTTTCTCTCCC 58.174 55.000 0.00 0.00 0.00 4.30
742 743 3.073209 GGTAATCCCATCCCTTTCTCTCC 59.927 52.174 0.00 0.00 0.00 3.71
743 744 3.977326 AGGTAATCCCATCCCTTTCTCTC 59.023 47.826 0.00 0.00 34.66 3.20
744 745 4.027782 AGGTAATCCCATCCCTTTCTCT 57.972 45.455 0.00 0.00 34.66 3.10
745 746 4.797912 AAGGTAATCCCATCCCTTTCTC 57.202 45.455 0.00 0.00 33.55 2.87
746 747 5.552430 AAAAGGTAATCCCATCCCTTTCT 57.448 39.130 3.23 0.00 44.43 2.52
766 767 3.055747 AGAAAAACTTGCGGTGGGAAAAA 60.056 39.130 0.00 0.00 0.00 1.94
767 768 2.498078 AGAAAAACTTGCGGTGGGAAAA 59.502 40.909 0.00 0.00 0.00 2.29
768 769 2.100087 GAGAAAAACTTGCGGTGGGAAA 59.900 45.455 0.00 0.00 0.00 3.13
769 770 1.679153 GAGAAAAACTTGCGGTGGGAA 59.321 47.619 0.00 0.00 0.00 3.97
770 771 1.314730 GAGAAAAACTTGCGGTGGGA 58.685 50.000 0.00 0.00 0.00 4.37
771 772 0.040425 CGAGAAAAACTTGCGGTGGG 60.040 55.000 0.00 0.00 0.00 4.61
772 773 0.661020 ACGAGAAAAACTTGCGGTGG 59.339 50.000 0.00 0.00 33.49 4.61
773 774 2.031683 AGAACGAGAAAAACTTGCGGTG 59.968 45.455 0.00 0.00 33.49 4.94
774 775 2.285977 AGAACGAGAAAAACTTGCGGT 58.714 42.857 0.00 0.00 33.49 5.68
775 776 2.659291 CGAGAACGAGAAAAACTTGCGG 60.659 50.000 0.00 0.00 42.66 5.69
776 777 2.550707 CGAGAACGAGAAAAACTTGCG 58.449 47.619 0.00 0.00 42.66 4.85
777 778 2.299170 GCGAGAACGAGAAAAACTTGC 58.701 47.619 0.00 0.00 42.66 4.01
778 779 2.550707 CGCGAGAACGAGAAAAACTTG 58.449 47.619 0.00 0.00 41.48 3.16
779 780 1.070776 GCGCGAGAACGAGAAAAACTT 60.071 47.619 12.10 0.00 41.48 2.66
780 781 0.507358 GCGCGAGAACGAGAAAAACT 59.493 50.000 12.10 0.00 41.48 2.66
781 782 0.780996 CGCGCGAGAACGAGAAAAAC 60.781 55.000 28.94 0.00 41.48 2.43
782 783 1.485514 CGCGCGAGAACGAGAAAAA 59.514 52.632 28.94 0.00 41.48 1.94
783 784 2.369629 CCGCGCGAGAACGAGAAAA 61.370 57.895 34.63 0.00 41.48 2.29
784 785 2.803670 CCGCGCGAGAACGAGAAA 60.804 61.111 34.63 0.00 41.48 2.52
796 797 2.726850 AAAAAGAAACGAGGCCGCGC 62.727 55.000 29.59 12.96 39.95 6.86
797 798 1.281656 AAAAAGAAACGAGGCCGCG 59.718 52.632 28.09 28.09 39.95 6.46
812 813 4.594136 GCGAGAAAGAAGGAAACGAAAAA 58.406 39.130 0.00 0.00 0.00 1.94
813 814 3.302870 CGCGAGAAAGAAGGAAACGAAAA 60.303 43.478 0.00 0.00 0.00 2.29
814 815 2.220133 CGCGAGAAAGAAGGAAACGAAA 59.780 45.455 0.00 0.00 0.00 3.46
815 816 1.790623 CGCGAGAAAGAAGGAAACGAA 59.209 47.619 0.00 0.00 0.00 3.85
816 817 1.415374 CGCGAGAAAGAAGGAAACGA 58.585 50.000 0.00 0.00 0.00 3.85
817 818 0.179248 GCGCGAGAAAGAAGGAAACG 60.179 55.000 12.10 0.00 0.00 3.60
818 819 0.179248 CGCGCGAGAAAGAAGGAAAC 60.179 55.000 28.94 0.00 0.00 2.78
819 820 1.289109 CCGCGCGAGAAAGAAGGAAA 61.289 55.000 34.63 0.00 0.00 3.13
820 821 1.736645 CCGCGCGAGAAAGAAGGAA 60.737 57.895 34.63 0.00 0.00 3.36
821 822 2.126071 CCGCGCGAGAAAGAAGGA 60.126 61.111 34.63 0.00 0.00 3.36
822 823 2.126071 TCCGCGCGAGAAAGAAGG 60.126 61.111 34.63 11.36 0.00 3.46
823 824 1.009389 AAGTCCGCGCGAGAAAGAAG 61.009 55.000 34.63 12.20 0.00 2.85
824 825 0.599204 AAAGTCCGCGCGAGAAAGAA 60.599 50.000 34.63 4.13 0.00 2.52
825 826 0.599204 AAAAGTCCGCGCGAGAAAGA 60.599 50.000 34.63 17.24 0.00 2.52
826 827 0.451135 CAAAAGTCCGCGCGAGAAAG 60.451 55.000 34.63 14.77 0.00 2.62
827 828 1.567537 CAAAAGTCCGCGCGAGAAA 59.432 52.632 34.63 10.96 0.00 2.52
828 829 2.950172 GCAAAAGTCCGCGCGAGAA 61.950 57.895 34.63 13.87 0.00 2.87
829 830 3.411351 GCAAAAGTCCGCGCGAGA 61.411 61.111 34.63 23.73 0.00 4.04
835 836 4.700365 GTGGCCGCAAAAGTCCGC 62.700 66.667 12.58 0.00 0.00 5.54
836 837 4.383602 CGTGGCCGCAAAAGTCCG 62.384 66.667 18.18 0.00 0.00 4.79
837 838 3.249973 GACGTGGCCGCAAAAGTCC 62.250 63.158 18.18 0.00 37.70 3.85
838 839 2.251371 GACGTGGCCGCAAAAGTC 59.749 61.111 18.18 11.57 37.70 3.01
839 840 3.645975 CGACGTGGCCGCAAAAGT 61.646 61.111 18.18 5.60 37.70 2.66
840 841 4.383602 CCGACGTGGCCGCAAAAG 62.384 66.667 18.18 1.79 37.70 2.27
841 842 4.912485 TCCGACGTGGCCGCAAAA 62.912 61.111 18.18 0.00 37.80 2.44
842 843 4.690719 ATCCGACGTGGCCGCAAA 62.691 61.111 18.18 0.00 37.80 3.68
847 848 4.814294 AAGCGATCCGACGTGGCC 62.814 66.667 0.00 0.00 37.80 5.36
848 849 3.255379 GAAGCGATCCGACGTGGC 61.255 66.667 0.00 0.00 37.80 5.01
849 850 2.582498 GGAAGCGATCCGACGTGG 60.582 66.667 0.00 0.00 38.79 4.94
857 858 2.033550 ACGTGATGACTAGGAAGCGATC 59.966 50.000 0.00 0.00 0.00 3.69
858 859 2.025155 ACGTGATGACTAGGAAGCGAT 58.975 47.619 0.00 0.00 0.00 4.58
859 860 1.460504 ACGTGATGACTAGGAAGCGA 58.539 50.000 0.00 0.00 0.00 4.93
860 861 3.106672 GTTACGTGATGACTAGGAAGCG 58.893 50.000 0.00 0.00 0.00 4.68
861 862 3.130693 AGGTTACGTGATGACTAGGAAGC 59.869 47.826 0.00 0.00 0.00 3.86
862 863 4.985538 AGGTTACGTGATGACTAGGAAG 57.014 45.455 0.00 0.00 0.00 3.46
863 864 6.199937 GTAAGGTTACGTGATGACTAGGAA 57.800 41.667 0.00 0.00 0.00 3.36
864 865 5.824904 GTAAGGTTACGTGATGACTAGGA 57.175 43.478 0.00 0.00 0.00 2.94
877 878 4.727475 ACGAAAGCTCTACGTAAGGTTAC 58.273 43.478 16.80 0.00 46.39 2.50
878 879 5.065218 CCTACGAAAGCTCTACGTAAGGTTA 59.935 44.000 16.80 6.34 40.88 2.85
879 880 3.930634 ACGAAAGCTCTACGTAAGGTT 57.069 42.857 10.22 13.05 46.39 3.50
880 881 3.376546 CCTACGAAAGCTCTACGTAAGGT 59.623 47.826 16.39 0.39 40.88 3.50
881 882 3.376546 ACCTACGAAAGCTCTACGTAAGG 59.623 47.826 16.39 18.45 40.88 2.69
882 883 4.142730 ACACCTACGAAAGCTCTACGTAAG 60.143 45.833 16.39 13.92 40.88 2.34
883 884 3.753272 ACACCTACGAAAGCTCTACGTAA 59.247 43.478 16.39 5.82 40.88 3.18
884 885 3.338249 ACACCTACGAAAGCTCTACGTA 58.662 45.455 15.37 15.37 40.61 3.57
885 886 2.157738 ACACCTACGAAAGCTCTACGT 58.842 47.619 14.87 14.87 42.70 3.57
886 887 2.915738 ACACCTACGAAAGCTCTACG 57.084 50.000 0.00 0.00 0.00 3.51
887 888 3.128242 TGCTACACCTACGAAAGCTCTAC 59.872 47.826 0.00 0.00 34.28 2.59
888 889 3.349927 TGCTACACCTACGAAAGCTCTA 58.650 45.455 0.00 0.00 34.28 2.43
889 890 2.168496 TGCTACACCTACGAAAGCTCT 58.832 47.619 0.00 0.00 34.28 4.09
890 891 2.649331 TGCTACACCTACGAAAGCTC 57.351 50.000 0.00 0.00 34.28 4.09
891 892 3.611766 AATGCTACACCTACGAAAGCT 57.388 42.857 0.00 0.00 34.28 3.74
892 893 5.522460 TCAATAATGCTACACCTACGAAAGC 59.478 40.000 0.00 0.00 0.00 3.51
893 894 7.715265 ATCAATAATGCTACACCTACGAAAG 57.285 36.000 0.00 0.00 0.00 2.62
894 895 9.037737 GTAATCAATAATGCTACACCTACGAAA 57.962 33.333 0.00 0.00 0.00 3.46
895 896 8.418662 AGTAATCAATAATGCTACACCTACGAA 58.581 33.333 0.00 0.00 0.00 3.85
896 897 7.865889 CAGTAATCAATAATGCTACACCTACGA 59.134 37.037 0.00 0.00 0.00 3.43
897 898 7.116376 CCAGTAATCAATAATGCTACACCTACG 59.884 40.741 0.00 0.00 0.00 3.51
898 899 8.148351 TCCAGTAATCAATAATGCTACACCTAC 58.852 37.037 0.00 0.00 0.00 3.18
899 900 8.257602 TCCAGTAATCAATAATGCTACACCTA 57.742 34.615 0.00 0.00 0.00 3.08
900 901 7.071196 TCTCCAGTAATCAATAATGCTACACCT 59.929 37.037 0.00 0.00 0.00 4.00
901 902 7.217200 TCTCCAGTAATCAATAATGCTACACC 58.783 38.462 0.00 0.00 0.00 4.16
902 903 8.144478 TCTCTCCAGTAATCAATAATGCTACAC 58.856 37.037 0.00 0.00 0.00 2.90
903 904 8.250143 TCTCTCCAGTAATCAATAATGCTACA 57.750 34.615 0.00 0.00 0.00 2.74
904 905 7.330700 GCTCTCTCCAGTAATCAATAATGCTAC 59.669 40.741 0.00 0.00 0.00 3.58
905 906 7.015584 TGCTCTCTCCAGTAATCAATAATGCTA 59.984 37.037 0.00 0.00 0.00 3.49
906 907 6.183361 TGCTCTCTCCAGTAATCAATAATGCT 60.183 38.462 0.00 0.00 0.00 3.79
907 908 5.994054 TGCTCTCTCCAGTAATCAATAATGC 59.006 40.000 0.00 0.00 0.00 3.56
908 909 8.442632 TTTGCTCTCTCCAGTAATCAATAATG 57.557 34.615 0.00 0.00 0.00 1.90
909 910 7.228308 GCTTTGCTCTCTCCAGTAATCAATAAT 59.772 37.037 0.00 0.00 0.00 1.28
910 911 6.540189 GCTTTGCTCTCTCCAGTAATCAATAA 59.460 38.462 0.00 0.00 0.00 1.40
911 912 6.051717 GCTTTGCTCTCTCCAGTAATCAATA 58.948 40.000 0.00 0.00 0.00 1.90
912 913 4.880696 GCTTTGCTCTCTCCAGTAATCAAT 59.119 41.667 0.00 0.00 0.00 2.57
913 914 4.256920 GCTTTGCTCTCTCCAGTAATCAA 58.743 43.478 0.00 0.00 0.00 2.57
914 915 3.369892 GGCTTTGCTCTCTCCAGTAATCA 60.370 47.826 0.00 0.00 0.00 2.57
915 916 3.202097 GGCTTTGCTCTCTCCAGTAATC 58.798 50.000 0.00 0.00 0.00 1.75
916 917 2.419297 CGGCTTTGCTCTCTCCAGTAAT 60.419 50.000 0.00 0.00 0.00 1.89
917 918 1.066858 CGGCTTTGCTCTCTCCAGTAA 60.067 52.381 0.00 0.00 0.00 2.24
1011 1012 3.672447 TAGAACGTGCCGTGGCGA 61.672 61.111 6.37 0.00 45.51 5.54
1056 1057 1.625818 GTCAGTGGTGTGAGGAGGAAT 59.374 52.381 0.00 0.00 0.00 3.01
1140 1141 1.031571 GCTGCCGGATGTTGGATTGA 61.032 55.000 5.05 0.00 0.00 2.57
1371 1375 0.611714 GGTTGGAGAAGCGGAGGTAA 59.388 55.000 0.00 0.00 37.06 2.85
1407 1411 0.107410 TGAGGTTGTCGTTGCTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
1551 1561 1.985116 GGTGTCGAAGCCCTCCTCT 60.985 63.158 0.00 0.00 0.00 3.69
1752 1777 3.368571 GCTGGAGGTGCTGGCAAC 61.369 66.667 1.95 1.95 0.00 4.17
1835 1860 6.201806 CCGCAAATTGAGGAAATTTTGTGTTA 59.798 34.615 10.32 0.00 44.41 2.41
1859 1884 8.367396 CACGTGTGTTAAAACTTAAAAGAAACC 58.633 33.333 7.58 0.00 0.00 3.27
1870 1895 4.131596 AGCCATACACGTGTGTTAAAACT 58.868 39.130 30.83 15.02 41.83 2.66
1903 1928 5.440234 AACAAACAATGCAACCGTATGTA 57.560 34.783 0.00 0.00 0.00 2.29
1950 1975 1.016130 AGCATCAAAGGCACGAGTCG 61.016 55.000 11.85 11.85 0.00 4.18
2008 2039 3.349022 TGCCTCGAATTTTTAACCGGAT 58.651 40.909 9.46 0.00 0.00 4.18
2032 2063 4.586421 TGTCAGTAATTCAAATGTTGCCCA 59.414 37.500 0.00 0.00 0.00 5.36
2034 2065 6.091169 CCATTGTCAGTAATTCAAATGTTGCC 59.909 38.462 0.00 0.00 0.00 4.52
2042 2073 8.739039 CCAGTTAATCCATTGTCAGTAATTCAA 58.261 33.333 0.00 0.00 0.00 2.69
2121 2153 2.588856 AAAGCCCGGTCTGTATCGCC 62.589 60.000 0.00 0.00 0.00 5.54
2134 2166 5.391312 ACATCATCAACTAAACAAAGCCC 57.609 39.130 0.00 0.00 0.00 5.19
2246 2308 3.433615 GCTAGCTTCTAATACCGGCATTG 59.566 47.826 10.34 0.81 0.00 2.82
2321 2383 6.397272 TCTAACAATCCAAACAAATCATGGC 58.603 36.000 0.00 0.00 34.13 4.40
2346 2408 6.314896 GTCACAATATGCTATTCAGGATAGGC 59.685 42.308 0.00 0.00 38.34 3.93
2434 2498 1.621301 CGTCTGAAGCGAAGGCACTG 61.621 60.000 0.00 0.00 40.86 3.66
2483 2550 7.225784 TCATATTTTGCTTTGTAAAGGAGCA 57.774 32.000 6.50 0.00 44.03 4.26
2486 2553 8.477984 GCAATCATATTTTGCTTTGTAAAGGA 57.522 30.769 11.27 0.61 44.71 3.36
2503 2570 7.514784 AGCTAATACATTTGCTGCAATCATA 57.485 32.000 16.77 8.90 44.78 2.15
2575 2642 8.834465 CATCAACTTCAGAAATAGGTATTCAGG 58.166 37.037 0.00 0.00 0.00 3.86
2657 2724 3.293337 TGATAGCCAGAATTGCAGCAAT 58.707 40.909 15.33 15.33 35.39 3.56
2679 2746 6.128634 CCTCAAATAACAGAGACAAACGGTAC 60.129 42.308 0.00 0.00 33.74 3.34
2713 2780 1.188219 TGCTCGCTGGTCTTCTCCTT 61.188 55.000 0.00 0.00 0.00 3.36
2731 2798 3.189910 ACATACAATGTGCTTGCTCAGTG 59.810 43.478 18.89 18.89 43.01 3.66
2733 2800 4.430137 AACATACAATGTGCTTGCTCAG 57.570 40.909 0.00 0.00 44.07 3.35
2777 2844 9.232473 GTTTTCTTTCCTACCTATTCATGAGTT 57.768 33.333 0.00 0.00 0.00 3.01
2779 2846 7.829211 TGGTTTTCTTTCCTACCTATTCATGAG 59.171 37.037 0.00 0.00 0.00 2.90
2795 2862 7.145323 CGATGGTAAGTTCATTGGTTTTCTTT 58.855 34.615 0.00 0.00 0.00 2.52
2846 2913 3.292460 AGGAAGAAGTACTCCTCATCCG 58.708 50.000 11.38 0.00 0.00 4.18
2907 2974 2.550830 AATGGACGCAGAAGAGTTGT 57.449 45.000 0.00 0.00 0.00 3.32
2908 2975 2.160417 GGAAATGGACGCAGAAGAGTTG 59.840 50.000 0.00 0.00 0.00 3.16
2909 2976 2.224523 TGGAAATGGACGCAGAAGAGTT 60.225 45.455 0.00 0.00 0.00 3.01
2910 2977 1.347707 TGGAAATGGACGCAGAAGAGT 59.652 47.619 0.00 0.00 0.00 3.24
2911 2978 2.099141 TGGAAATGGACGCAGAAGAG 57.901 50.000 0.00 0.00 0.00 2.85
2912 2979 2.559698 TTGGAAATGGACGCAGAAGA 57.440 45.000 0.00 0.00 0.00 2.87
2913 2980 3.641437 TTTTGGAAATGGACGCAGAAG 57.359 42.857 0.00 0.00 0.00 2.85
2914 2981 3.131223 TGTTTTTGGAAATGGACGCAGAA 59.869 39.130 0.00 0.00 0.00 3.02
2915 2982 2.690497 TGTTTTTGGAAATGGACGCAGA 59.310 40.909 0.00 0.00 0.00 4.26
2916 2983 3.090952 TGTTTTTGGAAATGGACGCAG 57.909 42.857 0.00 0.00 0.00 5.18
2917 2984 3.118956 AGTTGTTTTTGGAAATGGACGCA 60.119 39.130 0.00 0.00 0.00 5.24
2918 2985 3.453424 AGTTGTTTTTGGAAATGGACGC 58.547 40.909 0.00 0.00 0.00 5.19
2919 2986 4.932146 AGAGTTGTTTTTGGAAATGGACG 58.068 39.130 0.00 0.00 0.00 4.79
2920 2987 6.476706 CAGAAGAGTTGTTTTTGGAAATGGAC 59.523 38.462 0.00 0.00 0.00 4.02
2921 2988 6.572519 CAGAAGAGTTGTTTTTGGAAATGGA 58.427 36.000 0.00 0.00 0.00 3.41
2922 2989 5.234972 GCAGAAGAGTTGTTTTTGGAAATGG 59.765 40.000 0.00 0.00 0.00 3.16
2923 2990 5.051508 CGCAGAAGAGTTGTTTTTGGAAATG 60.052 40.000 0.00 0.00 0.00 2.32
2924 2991 5.043248 CGCAGAAGAGTTGTTTTTGGAAAT 58.957 37.500 0.00 0.00 0.00 2.17
2925 2992 4.082463 ACGCAGAAGAGTTGTTTTTGGAAA 60.082 37.500 0.00 0.00 0.00 3.13
2926 2993 3.442273 ACGCAGAAGAGTTGTTTTTGGAA 59.558 39.130 0.00 0.00 0.00 3.53
2927 2994 3.013921 ACGCAGAAGAGTTGTTTTTGGA 58.986 40.909 0.00 0.00 0.00 3.53
2928 2995 3.108144 CACGCAGAAGAGTTGTTTTTGG 58.892 45.455 0.00 0.00 0.00 3.28
2929 2996 3.758300 ACACGCAGAAGAGTTGTTTTTG 58.242 40.909 0.00 0.00 0.00 2.44
2930 2997 4.412207 GAACACGCAGAAGAGTTGTTTTT 58.588 39.130 0.00 0.00 0.00 1.94
2931 2998 3.485216 CGAACACGCAGAAGAGTTGTTTT 60.485 43.478 0.00 0.00 0.00 2.43
2932 2999 2.030457 CGAACACGCAGAAGAGTTGTTT 59.970 45.455 0.00 0.00 0.00 2.83
2933 3000 1.593006 CGAACACGCAGAAGAGTTGTT 59.407 47.619 0.00 0.00 0.00 2.83
2965 3032 4.461781 TCGAAATTCCCGAAGAAGTACTCT 59.538 41.667 0.00 0.00 38.07 3.24
2966 3033 4.741342 TCGAAATTCCCGAAGAAGTACTC 58.259 43.478 0.00 0.00 38.07 2.59
3010 3077 7.311297 GGATCATTCCATTAACAGGGCTATAGA 60.311 40.741 3.21 0.00 42.12 1.98
3011 3078 6.825721 GGATCATTCCATTAACAGGGCTATAG 59.174 42.308 0.00 0.00 42.12 1.31
3012 3079 6.297010 GGGATCATTCCATTAACAGGGCTATA 60.297 42.308 0.00 0.00 44.60 1.31
3013 3080 5.517299 GGGATCATTCCATTAACAGGGCTAT 60.517 44.000 0.00 0.00 44.60 2.97
3015 3082 3.437052 GGGATCATTCCATTAACAGGGCT 60.437 47.826 0.00 0.00 44.60 5.19
3016 3083 2.893489 GGGATCATTCCATTAACAGGGC 59.107 50.000 0.00 0.00 44.60 5.19
3017 3084 4.459852 AGGGATCATTCCATTAACAGGG 57.540 45.455 0.00 0.00 44.60 4.45
3018 3085 6.192970 ACTAGGGATCATTCCATTAACAGG 57.807 41.667 0.00 0.00 44.60 4.00
3046 3121 5.012561 GGTGGATGGAGTAGATGCTAATCTT 59.987 44.000 0.00 0.00 40.42 2.40
3058 3133 7.147620 ACGTCTTATATTTTGGTGGATGGAGTA 60.148 37.037 0.00 0.00 0.00 2.59
3059 3134 6.055588 CGTCTTATATTTTGGTGGATGGAGT 58.944 40.000 0.00 0.00 0.00 3.85
3060 3135 6.055588 ACGTCTTATATTTTGGTGGATGGAG 58.944 40.000 0.00 0.00 0.00 3.86
3061 3136 5.996644 ACGTCTTATATTTTGGTGGATGGA 58.003 37.500 0.00 0.00 0.00 3.41
3062 3137 6.693315 AACGTCTTATATTTTGGTGGATGG 57.307 37.500 0.00 0.00 0.00 3.51
3063 3138 8.859156 CAAAAACGTCTTATATTTTGGTGGATG 58.141 33.333 11.33 0.00 38.47 3.51
3064 3139 7.544217 GCAAAAACGTCTTATATTTTGGTGGAT 59.456 33.333 17.78 0.00 41.02 3.41
3065 3140 6.864165 GCAAAAACGTCTTATATTTTGGTGGA 59.136 34.615 17.78 0.00 41.02 4.02
3066 3141 6.642950 TGCAAAAACGTCTTATATTTTGGTGG 59.357 34.615 17.78 0.00 41.02 4.61
3067 3142 7.381139 AGTGCAAAAACGTCTTATATTTTGGTG 59.619 33.333 17.78 0.40 41.02 4.17
3068 3143 7.430441 AGTGCAAAAACGTCTTATATTTTGGT 58.570 30.769 17.78 0.00 41.02 3.67
3069 3144 7.867445 AGTGCAAAAACGTCTTATATTTTGG 57.133 32.000 17.78 1.00 41.02 3.28
3078 3153 9.691362 ATCAAAATATAAGTGCAAAAACGTCTT 57.309 25.926 0.00 0.00 0.00 3.01
3081 3156 9.900710 TGTATCAAAATATAAGTGCAAAAACGT 57.099 25.926 0.00 0.00 0.00 3.99
3086 3161 9.461312 ACCTCTGTATCAAAATATAAGTGCAAA 57.539 29.630 0.00 0.00 0.00 3.68
3088 3163 9.764363 CTACCTCTGTATCAAAATATAAGTGCA 57.236 33.333 0.00 0.00 0.00 4.57
3089 3164 9.765795 ACTACCTCTGTATCAAAATATAAGTGC 57.234 33.333 0.00 0.00 0.00 4.40
3200 3276 7.704899 CACCATATACGTGTTTCATGAGACTTA 59.295 37.037 16.54 6.66 0.00 2.24
3202 3278 6.042777 CACCATATACGTGTTTCATGAGACT 58.957 40.000 16.54 0.45 0.00 3.24
3203 3279 5.234329 CCACCATATACGTGTTTCATGAGAC 59.766 44.000 9.40 9.40 0.00 3.36
3204 3280 5.128008 TCCACCATATACGTGTTTCATGAGA 59.872 40.000 0.00 0.00 0.00 3.27
3205 3281 5.356426 TCCACCATATACGTGTTTCATGAG 58.644 41.667 0.00 0.00 0.00 2.90
3216 3292 2.226437 GCAGCCAATTCCACCATATACG 59.774 50.000 0.00 0.00 0.00 3.06
3268 3352 5.105752 AGTCGAATCTATCAGAAAGCACAC 58.894 41.667 0.00 0.00 0.00 3.82
3309 3393 8.568794 AGATCAATGATAAGTGAATCAATGCTG 58.431 33.333 0.00 0.00 39.25 4.41
3348 3432 3.539563 CAGCAAAGTTATTTGTCGCATCG 59.460 43.478 2.98 0.00 46.26 3.84
3350 3434 4.379813 CCTCAGCAAAGTTATTTGTCGCAT 60.380 41.667 2.98 0.00 46.26 4.73
3357 3441 7.484140 GCTTATTAGCCTCAGCAAAGTTATTT 58.516 34.615 0.00 0.00 43.56 1.40
3359 3443 6.625873 GCTTATTAGCCTCAGCAAAGTTAT 57.374 37.500 0.00 0.00 43.56 1.89
3375 3459 3.731431 TCCTCCCTCACCAAGCTTATTA 58.269 45.455 0.00 0.00 0.00 0.98
3423 3507 6.402550 GCATGCTAAAGAATCGGTATGGTATG 60.403 42.308 11.37 0.00 0.00 2.39
3424 3508 5.643777 GCATGCTAAAGAATCGGTATGGTAT 59.356 40.000 11.37 0.00 0.00 2.73
3425 3509 4.994852 GCATGCTAAAGAATCGGTATGGTA 59.005 41.667 11.37 0.00 0.00 3.25
3426 3510 3.815401 GCATGCTAAAGAATCGGTATGGT 59.185 43.478 11.37 0.00 0.00 3.55
3427 3511 4.067896 AGCATGCTAAAGAATCGGTATGG 58.932 43.478 21.21 0.00 0.00 2.74
3794 3886 4.079958 AGTTCAGTTTTCCAACACCCTAGT 60.080 41.667 0.00 0.00 35.05 2.57
3795 3887 4.461198 AGTTCAGTTTTCCAACACCCTAG 58.539 43.478 0.00 0.00 35.05 3.02
3796 3888 4.513406 AGTTCAGTTTTCCAACACCCTA 57.487 40.909 0.00 0.00 35.05 3.53
3797 3889 3.382083 AGTTCAGTTTTCCAACACCCT 57.618 42.857 0.00 0.00 35.05 4.34
3798 3890 4.465632 AAAGTTCAGTTTTCCAACACCC 57.534 40.909 0.00 0.00 35.05 4.61
3799 3891 7.262048 TGAATAAAGTTCAGTTTTCCAACACC 58.738 34.615 0.00 0.00 35.05 4.16
3800 3892 8.871686 ATGAATAAAGTTCAGTTTTCCAACAC 57.128 30.769 0.00 0.00 35.05 3.32
3801 3893 9.528018 GAATGAATAAAGTTCAGTTTTCCAACA 57.472 29.630 0.00 0.00 35.05 3.33
3802 3894 9.528018 TGAATGAATAAAGTTCAGTTTTCCAAC 57.472 29.630 0.00 0.00 0.00 3.77
3821 3920 5.568685 TTGAACAAGAAACCGTGAATGAA 57.431 34.783 0.00 0.00 0.00 2.57
3863 3962 2.344093 TCCCCAGTCTAGCTCCTTTT 57.656 50.000 0.00 0.00 0.00 2.27
3969 4068 6.148480 AGTCTAACAGAACATTGCTAGCTTTG 59.852 38.462 17.23 15.16 0.00 2.77
4217 4324 3.118847 TCAAAATGCCAAAGCTGAACACA 60.119 39.130 0.00 0.00 40.80 3.72
4310 4417 1.272490 TCAGCACAGGAACTTACGAGG 59.728 52.381 0.00 0.00 34.60 4.63
4322 4429 1.277273 TGGAGTTCAGGATCAGCACAG 59.723 52.381 0.00 0.00 0.00 3.66
4353 4460 6.058183 AGCACTCAGTATTTTTCACAGAAGT 58.942 36.000 0.00 0.00 0.00 3.01
4382 4575 4.280929 TCCAGTGTTCCCATATCTGTATCG 59.719 45.833 0.00 0.00 0.00 2.92
4435 4628 1.859703 CGCATGACTTCTCAGAGATGC 59.140 52.381 12.30 11.90 36.02 3.91
4480 4673 1.250328 CAGAGCAGCCCAATGTGAAA 58.750 50.000 0.00 0.00 0.00 2.69
4488 4681 0.535780 CTTGAACACAGAGCAGCCCA 60.536 55.000 0.00 0.00 0.00 5.36
4500 4693 4.574674 ATCAGCTGGGTTATCTTGAACA 57.425 40.909 15.13 0.00 0.00 3.18
4572 4765 0.179936 GCTTGGATGGAGACTGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
4655 4848 3.691342 CGGTCGACTGGGAAGCCA 61.691 66.667 16.99 0.00 0.00 4.75
4689 4882 6.871844 TGTGATTGAAACTTCATTTGGTGAA 58.128 32.000 0.00 0.00 44.36 3.18
4827 5020 1.168714 AAGAAATCAACTGCCTCGGC 58.831 50.000 0.00 0.00 42.35 5.54
4883 5077 8.618702 TCCACGTTGGAAAAACTACAAATATA 57.381 30.769 4.51 0.00 45.00 0.86
4898 5092 5.369833 TGTTCTAGAATTTTCCACGTTGGA 58.630 37.500 8.75 3.02 46.61 3.53
4903 5097 5.048713 AGCCTTTGTTCTAGAATTTTCCACG 60.049 40.000 8.75 0.00 0.00 4.94
4947 5141 9.295825 TGTCAATCTATTGGTTCTGTTTACAAT 57.704 29.630 3.00 0.00 38.30 2.71
4948 5142 8.564574 GTGTCAATCTATTGGTTCTGTTTACAA 58.435 33.333 3.00 0.00 38.30 2.41
4949 5143 7.717436 TGTGTCAATCTATTGGTTCTGTTTACA 59.283 33.333 3.00 0.00 38.30 2.41
4950 5144 8.094798 TGTGTCAATCTATTGGTTCTGTTTAC 57.905 34.615 3.00 0.00 38.30 2.01
4951 5145 8.684386 TTGTGTCAATCTATTGGTTCTGTTTA 57.316 30.769 3.00 0.00 38.30 2.01
4952 5146 7.581213 TTGTGTCAATCTATTGGTTCTGTTT 57.419 32.000 3.00 0.00 38.30 2.83
4953 5147 7.581213 TTTGTGTCAATCTATTGGTTCTGTT 57.419 32.000 3.00 0.00 38.30 3.16
4954 5148 7.765695 ATTTGTGTCAATCTATTGGTTCTGT 57.234 32.000 3.00 0.00 38.30 3.41
4955 5149 7.062605 GCAATTTGTGTCAATCTATTGGTTCTG 59.937 37.037 3.00 0.00 38.30 3.02
4956 5150 7.039504 AGCAATTTGTGTCAATCTATTGGTTCT 60.040 33.333 3.00 0.00 38.30 3.01
4989 5183 1.355381 TGTCTGGCTTGGTTGGATCAT 59.645 47.619 0.00 0.00 0.00 2.45
5045 5239 3.299340 AGCGTTTCATGTAGAACGACT 57.701 42.857 24.67 19.48 35.56 4.18
5105 5299 5.255687 GGGGTATACCTCCTTTTCGAAAAA 58.744 41.667 22.67 9.49 40.03 1.94
5106 5300 4.847198 GGGGTATACCTCCTTTTCGAAAA 58.153 43.478 21.35 21.35 40.03 2.29
5107 5301 4.492494 GGGGTATACCTCCTTTTCGAAA 57.508 45.455 21.25 6.47 40.03 3.46
5117 5311 1.912264 GAGGCCGGGGGTATACCTC 60.912 68.421 21.25 17.88 40.14 3.85
5118 5312 2.203466 GAGGCCGGGGGTATACCT 59.797 66.667 21.25 0.00 40.03 3.08
5119 5313 2.203466 AGAGGCCGGGGGTATACC 59.797 66.667 13.99 13.99 39.11 2.73
5120 5314 2.880380 GCAGAGGCCGGGGGTATAC 61.880 68.421 2.18 0.00 0.00 1.47
5121 5315 2.525877 GCAGAGGCCGGGGGTATA 60.526 66.667 2.18 0.00 0.00 1.47
5122 5316 4.815973 TGCAGAGGCCGGGGGTAT 62.816 66.667 2.18 0.00 40.13 2.73
5123 5317 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
5126 5320 4.247380 GAGATGCAGAGGCCGGGG 62.247 72.222 2.18 0.00 40.13 5.73
5127 5321 2.739996 AAGAGATGCAGAGGCCGGG 61.740 63.158 2.18 0.00 40.13 5.73
5128 5322 1.523258 CAAGAGATGCAGAGGCCGG 60.523 63.158 0.00 0.00 40.13 6.13
5129 5323 0.106335 ATCAAGAGATGCAGAGGCCG 59.894 55.000 0.00 0.00 40.13 6.13
5130 5324 1.595466 CATCAAGAGATGCAGAGGCC 58.405 55.000 0.00 0.00 44.61 5.19
5139 5333 1.003928 TGGCTGTGTGCATCAAGAGAT 59.996 47.619 0.00 0.00 45.15 2.75
5140 5334 0.397564 TGGCTGTGTGCATCAAGAGA 59.602 50.000 0.00 0.00 45.15 3.10
5141 5335 1.132453 CATGGCTGTGTGCATCAAGAG 59.868 52.381 0.00 0.00 45.15 2.85
5142 5336 1.170442 CATGGCTGTGTGCATCAAGA 58.830 50.000 0.00 0.00 45.15 3.02
5143 5337 0.172578 CCATGGCTGTGTGCATCAAG 59.827 55.000 0.00 0.00 45.15 3.02
5144 5338 0.251253 TCCATGGCTGTGTGCATCAA 60.251 50.000 6.96 0.00 45.15 2.57
5145 5339 0.033894 ATCCATGGCTGTGTGCATCA 60.034 50.000 6.96 0.00 45.15 3.07
5146 5340 0.384309 CATCCATGGCTGTGTGCATC 59.616 55.000 6.96 0.00 45.15 3.91
5147 5341 1.040893 CCATCCATGGCTGTGTGCAT 61.041 55.000 14.32 0.00 45.15 3.96
5148 5342 1.679641 CCATCCATGGCTGTGTGCA 60.680 57.895 14.32 0.00 45.15 4.57
5149 5343 2.420568 CCCATCCATGGCTGTGTGC 61.421 63.158 14.32 0.00 46.70 4.57
5150 5344 1.755395 CCCCATCCATGGCTGTGTG 60.755 63.158 14.32 2.94 46.70 3.82
5151 5345 1.803453 AACCCCATCCATGGCTGTGT 61.803 55.000 14.32 8.27 46.70 3.72
5152 5346 0.258484 TAACCCCATCCATGGCTGTG 59.742 55.000 14.32 9.30 46.70 3.66
5153 5347 1.234806 ATAACCCCATCCATGGCTGT 58.765 50.000 14.32 0.00 46.70 4.40
5154 5348 2.386829 AATAACCCCATCCATGGCTG 57.613 50.000 6.96 7.93 46.70 4.85
5155 5349 3.308401 GAAAATAACCCCATCCATGGCT 58.692 45.455 6.96 0.00 46.70 4.75
5156 5350 3.037549 TGAAAATAACCCCATCCATGGC 58.962 45.455 6.96 0.00 46.70 4.40
5158 5352 6.108015 CACTTTGAAAATAACCCCATCCATG 58.892 40.000 0.00 0.00 0.00 3.66
5159 5353 5.189539 CCACTTTGAAAATAACCCCATCCAT 59.810 40.000 0.00 0.00 0.00 3.41
5206 5400 4.451096 TGCTGAAGAAAAGGCTACTTTACG 59.549 41.667 0.00 0.00 45.85 3.18
5362 5557 4.163839 CAGAAGAGGAGACATGGAATTCCT 59.836 45.833 24.73 5.15 42.60 3.36
5365 5560 5.013495 TGAACAGAAGAGGAGACATGGAATT 59.987 40.000 0.00 0.00 0.00 2.17
5525 5727 1.532505 CGTGCTTTAGCCATGTCATGC 60.533 52.381 7.35 3.48 41.18 4.06
5540 5742 8.604035 CACAAGATAAGTTTCATATTACGTGCT 58.396 33.333 0.00 0.00 0.00 4.40



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.