Multiple sequence alignment - TraesCS2B01G241400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G241400 chr2B 100.000 5268 0 0 1 5268 245321448 245316181 0.000000e+00 9729.0
1 TraesCS2B01G241400 chr2B 75.041 617 123 22 4463 5064 264570928 264570328 1.880000e-64 257.0
2 TraesCS2B01G241400 chr2B 96.154 104 4 0 2946 3049 245318400 245318503 2.520000e-38 171.0
3 TraesCS2B01G241400 chr2B 95.098 102 4 1 2947 3048 11466184 11466284 5.460000e-35 159.0
4 TraesCS2B01G241400 chr2B 93.333 105 6 1 2947 3051 11466284 11466181 2.540000e-33 154.0
5 TraesCS2B01G241400 chr2B 92.523 107 8 0 2942 3048 373290392 373290286 2.540000e-33 154.0
6 TraesCS2B01G241400 chr2B 76.617 201 21 18 1573 1757 245691189 245690999 2.610000e-13 87.9
7 TraesCS2B01G241400 chr2A 92.263 1874 117 15 881 2740 203258288 203256429 0.000000e+00 2632.0
8 TraesCS2B01G241400 chr2A 87.677 1550 134 48 3049 4568 203256047 203254525 0.000000e+00 1751.0
9 TraesCS2B01G241400 chr2A 79.130 115 14 8 1573 1685 203288305 203288199 2.630000e-08 71.3
10 TraesCS2B01G241400 chr2D 88.653 1225 85 30 838 2024 189298321 189297113 0.000000e+00 1443.0
11 TraesCS2B01G241400 chr2D 83.212 1650 171 55 3669 5268 189295242 189293649 0.000000e+00 1415.0
12 TraesCS2B01G241400 chr2D 94.540 696 34 3 2048 2740 189296930 189296236 0.000000e+00 1072.0
13 TraesCS2B01G241400 chr2D 88.165 583 40 15 3049 3605 189295965 189295386 0.000000e+00 667.0
14 TraesCS2B01G241400 chr2D 76.000 200 28 13 1573 1756 189376260 189376065 9.400000e-13 86.1
15 TraesCS2B01G241400 chr2D 89.286 56 2 3 4252 4304 209083496 209083442 3.400000e-07 67.6
16 TraesCS2B01G241400 chr2D 91.304 46 3 1 787 831 189298501 189298456 1.580000e-05 62.1
17 TraesCS2B01G241400 chr7B 98.716 701 8 1 1 701 426099434 426098735 0.000000e+00 1243.0
18 TraesCS2B01G241400 chr7B 89.261 717 28 13 1 701 686531603 686532286 0.000000e+00 852.0
19 TraesCS2B01G241400 chr3B 98.431 701 11 0 1 701 189411103 189410403 0.000000e+00 1234.0
20 TraesCS2B01G241400 chr3B 92.737 716 31 10 1 701 672134423 672133714 0.000000e+00 1014.0
21 TraesCS2B01G241400 chr3B 90.599 734 28 10 1 702 518846841 518847565 0.000000e+00 935.0
22 TraesCS2B01G241400 chr3B 90.450 733 28 10 1 702 518408205 518408926 0.000000e+00 928.0
23 TraesCS2B01G241400 chr3B 92.793 111 5 2 2945 3055 51801853 51801746 1.960000e-34 158.0
24 TraesCS2B01G241400 chrUn 90.872 734 26 11 1 702 131578301 131577577 0.000000e+00 946.0
25 TraesCS2B01G241400 chrUn 90.587 733 29 13 1 702 5168683 5169406 0.000000e+00 935.0
26 TraesCS2B01G241400 chr1B 74.852 843 160 35 4259 5066 512786994 512786169 8.450000e-88 335.0
27 TraesCS2B01G241400 chr1B 89.916 119 6 2 2943 3055 15616940 15616822 1.180000e-31 148.0
28 TraesCS2B01G241400 chr1A 76.524 656 116 24 2082 2712 578016501 578015859 1.830000e-84 324.0
29 TraesCS2B01G241400 chr1D 89.083 229 19 5 2486 2712 481482001 481482225 4.020000e-71 279.0
30 TraesCS2B01G241400 chr1D 88.584 219 25 0 2494 2712 481558047 481557829 3.130000e-67 267.0
31 TraesCS2B01G241400 chr1D 74.609 575 125 18 4506 5066 464311743 464311176 3.170000e-57 233.0
32 TraesCS2B01G241400 chr1D 96.094 128 5 0 1 128 463030825 463030698 5.350000e-50 209.0
33 TraesCS2B01G241400 chr7D 77.282 493 95 12 4463 4943 379329155 379328668 1.870000e-69 274.0
34 TraesCS2B01G241400 chr7D 72.183 852 179 42 4258 5072 398836400 398837230 1.920000e-49 207.0
35 TraesCS2B01G241400 chr7D 97.826 46 0 1 4259 4304 506812284 506812328 1.570000e-10 78.7
36 TraesCS2B01G241400 chr6D 75.365 617 125 17 4446 5040 251240190 251240801 6.720000e-69 272.0
37 TraesCS2B01G241400 chr6D 91.515 165 14 0 537 701 23356635 23356471 1.480000e-55 228.0
38 TraesCS2B01G241400 chr6A 73.967 726 158 21 4300 5010 344180893 344180184 1.120000e-66 265.0
39 TraesCS2B01G241400 chr6A 95.833 48 0 2 4258 4304 23200994 23201040 5.660000e-10 76.8
40 TraesCS2B01G241400 chr5A 73.864 704 140 27 4267 4943 607545408 607546094 1.900000e-59 241.0
41 TraesCS2B01G241400 chr5A 78.261 230 46 4 3671 3898 546306457 546306230 1.530000e-30 145.0
42 TraesCS2B01G241400 chr5A 90.244 41 4 0 3678 3718 639189244 639189284 3.000000e-03 54.7
43 TraesCS2B01G241400 chr5D 91.304 115 5 1 2943 3052 391376877 391376991 9.140000e-33 152.0
44 TraesCS2B01G241400 chr5B 90.000 120 7 2 2947 3061 167283532 167283413 3.290000e-32 150.0
45 TraesCS2B01G241400 chr4A 88.618 123 9 2 2934 3051 550136506 550136384 1.530000e-30 145.0
46 TraesCS2B01G241400 chr4A 76.351 148 34 1 5115 5262 680057794 680057940 1.570000e-10 78.7
47 TraesCS2B01G241400 chr4A 79.279 111 11 9 4259 4359 740874856 740874964 3.400000e-07 67.6
48 TraesCS2B01G241400 chr4A 88.889 54 4 2 4265 4317 739839928 739839980 1.220000e-06 65.8
49 TraesCS2B01G241400 chr3D 81.000 100 9 3 4259 4348 517757982 517758081 2.630000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G241400 chr2B 245316181 245321448 5267 True 9729.00 9729 100.0000 1 5268 1 chr2B.!!$R2 5267
1 TraesCS2B01G241400 chr2B 264570328 264570928 600 True 257.00 257 75.0410 4463 5064 1 chr2B.!!$R4 601
2 TraesCS2B01G241400 chr2A 203254525 203258288 3763 True 2191.50 2632 89.9700 881 4568 2 chr2A.!!$R2 3687
3 TraesCS2B01G241400 chr2D 189293649 189298501 4852 True 931.82 1443 89.1748 787 5268 5 chr2D.!!$R3 4481
4 TraesCS2B01G241400 chr7B 426098735 426099434 699 True 1243.00 1243 98.7160 1 701 1 chr7B.!!$R1 700
5 TraesCS2B01G241400 chr7B 686531603 686532286 683 False 852.00 852 89.2610 1 701 1 chr7B.!!$F1 700
6 TraesCS2B01G241400 chr3B 189410403 189411103 700 True 1234.00 1234 98.4310 1 701 1 chr3B.!!$R2 700
7 TraesCS2B01G241400 chr3B 672133714 672134423 709 True 1014.00 1014 92.7370 1 701 1 chr3B.!!$R3 700
8 TraesCS2B01G241400 chr3B 518846841 518847565 724 False 935.00 935 90.5990 1 702 1 chr3B.!!$F2 701
9 TraesCS2B01G241400 chr3B 518408205 518408926 721 False 928.00 928 90.4500 1 702 1 chr3B.!!$F1 701
10 TraesCS2B01G241400 chrUn 131577577 131578301 724 True 946.00 946 90.8720 1 702 1 chrUn.!!$R1 701
11 TraesCS2B01G241400 chrUn 5168683 5169406 723 False 935.00 935 90.5870 1 702 1 chrUn.!!$F1 701
12 TraesCS2B01G241400 chr1B 512786169 512786994 825 True 335.00 335 74.8520 4259 5066 1 chr1B.!!$R2 807
13 TraesCS2B01G241400 chr1A 578015859 578016501 642 True 324.00 324 76.5240 2082 2712 1 chr1A.!!$R1 630
14 TraesCS2B01G241400 chr1D 464311176 464311743 567 True 233.00 233 74.6090 4506 5066 1 chr1D.!!$R2 560
15 TraesCS2B01G241400 chr7D 398836400 398837230 830 False 207.00 207 72.1830 4258 5072 1 chr7D.!!$F1 814
16 TraesCS2B01G241400 chr6D 251240190 251240801 611 False 272.00 272 75.3650 4446 5040 1 chr6D.!!$F1 594
17 TraesCS2B01G241400 chr6A 344180184 344180893 709 True 265.00 265 73.9670 4300 5010 1 chr6A.!!$R1 710
18 TraesCS2B01G241400 chr5A 607545408 607546094 686 False 241.00 241 73.8640 4267 4943 1 chr5A.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 835 0.179163 CCCGCGGCAAGAAAAATCTC 60.179 55.0 22.85 0.0 0.00 2.75 F
1559 1774 0.109458 CGTCTTCGAATGTCGGGTCA 60.109 55.0 0.00 0.0 40.88 4.02 F
1929 2144 0.392461 GCCGCCATCTGTAACTCCAA 60.392 55.0 0.00 0.0 0.00 3.53 F
2123 2505 0.394352 GGAATCTCCGTGGGCATTGT 60.394 55.0 0.00 0.0 0.00 2.71 F
2742 3148 0.473694 TCACCTCTCTTGCCCTCCAA 60.474 55.0 0.00 0.0 0.00 3.53 F
3044 3614 0.038744 AGTAGTTCCGAACGGAGGGA 59.961 55.0 15.34 0.0 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2494 0.662970 CGGAACAAACAATGCCCACG 60.663 55.0 0.00 0.00 0.00 4.94 R
3025 3595 0.038744 TCCCTCCGTTCGGAACTACT 59.961 55.0 17.94 0.00 33.41 2.57 R
3026 3596 0.455005 CTCCCTCCGTTCGGAACTAC 59.545 60.0 17.94 0.00 33.41 2.73 R
3027 3597 0.038744 ACTCCCTCCGTTCGGAACTA 59.961 55.0 17.94 6.05 33.41 2.24 R
4039 4716 0.687354 ATCCTCGCTGAAACCACAGT 59.313 50.0 0.00 0.00 39.73 3.55 R
4444 5147 0.964358 CGGGTTGGTCTACCGTCTCT 60.964 60.0 0.00 0.00 42.53 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 232 6.654793 TTTGGAAAAAGGTTCGTCAATTTG 57.345 33.333 0.00 0.00 0.00 2.32
544 607 2.187946 GGTGAGCATAGCAGCGGT 59.812 61.111 0.00 0.00 40.15 5.68
620 683 3.709653 AGACCGGGATTGCATAGTTTAGA 59.290 43.478 6.32 0.00 0.00 2.10
717 780 5.821516 TTTTCCGAAAAAGAGTTAGTGCA 57.178 34.783 3.74 0.00 30.90 4.57
718 781 5.821516 TTTCCGAAAAAGAGTTAGTGCAA 57.178 34.783 0.00 0.00 0.00 4.08
719 782 5.418310 TTCCGAAAAAGAGTTAGTGCAAG 57.582 39.130 0.00 0.00 0.00 4.01
720 783 4.448210 TCCGAAAAAGAGTTAGTGCAAGT 58.552 39.130 0.00 0.00 0.00 3.16
721 784 4.879545 TCCGAAAAAGAGTTAGTGCAAGTT 59.120 37.500 0.00 0.00 0.00 2.66
722 785 4.970003 CCGAAAAAGAGTTAGTGCAAGTTG 59.030 41.667 0.00 0.00 0.00 3.16
723 786 5.220777 CCGAAAAAGAGTTAGTGCAAGTTGA 60.221 40.000 7.16 0.00 0.00 3.18
724 787 6.430451 CGAAAAAGAGTTAGTGCAAGTTGAT 58.570 36.000 7.16 0.00 0.00 2.57
725 788 6.912591 CGAAAAAGAGTTAGTGCAAGTTGATT 59.087 34.615 7.16 0.00 0.00 2.57
726 789 7.096885 CGAAAAAGAGTTAGTGCAAGTTGATTG 60.097 37.037 7.16 0.00 42.20 2.67
727 790 6.699575 AAAGAGTTAGTGCAAGTTGATTGT 57.300 33.333 7.16 0.00 41.29 2.71
728 791 5.931441 AGAGTTAGTGCAAGTTGATTGTC 57.069 39.130 7.16 0.00 41.29 3.18
729 792 4.757149 AGAGTTAGTGCAAGTTGATTGTCC 59.243 41.667 7.16 0.00 41.29 4.02
730 793 4.718961 AGTTAGTGCAAGTTGATTGTCCT 58.281 39.130 7.16 0.00 41.29 3.85
731 794 5.133221 AGTTAGTGCAAGTTGATTGTCCTT 58.867 37.500 7.16 0.00 41.29 3.36
732 795 5.594317 AGTTAGTGCAAGTTGATTGTCCTTT 59.406 36.000 7.16 0.00 41.29 3.11
733 796 6.096846 AGTTAGTGCAAGTTGATTGTCCTTTT 59.903 34.615 7.16 0.00 41.29 2.27
734 797 4.936891 AGTGCAAGTTGATTGTCCTTTTC 58.063 39.130 7.16 0.00 41.29 2.29
735 798 3.730715 GTGCAAGTTGATTGTCCTTTTCG 59.269 43.478 7.16 0.00 41.29 3.46
736 799 3.380004 TGCAAGTTGATTGTCCTTTTCGT 59.620 39.130 7.16 0.00 41.29 3.85
737 800 4.142271 TGCAAGTTGATTGTCCTTTTCGTT 60.142 37.500 7.16 0.00 41.29 3.85
738 801 4.207019 GCAAGTTGATTGTCCTTTTCGTTG 59.793 41.667 7.16 0.00 41.29 4.10
739 802 5.577835 CAAGTTGATTGTCCTTTTCGTTGA 58.422 37.500 0.00 0.00 33.95 3.18
740 803 5.169836 AGTTGATTGTCCTTTTCGTTGAC 57.830 39.130 0.00 0.00 0.00 3.18
741 804 4.881850 AGTTGATTGTCCTTTTCGTTGACT 59.118 37.500 0.00 0.00 0.00 3.41
742 805 4.811555 TGATTGTCCTTTTCGTTGACTG 57.188 40.909 0.00 0.00 0.00 3.51
743 806 3.003275 TGATTGTCCTTTTCGTTGACTGC 59.997 43.478 0.00 0.00 0.00 4.40
744 807 1.305201 TGTCCTTTTCGTTGACTGCC 58.695 50.000 0.00 0.00 0.00 4.85
745 808 1.305201 GTCCTTTTCGTTGACTGCCA 58.695 50.000 0.00 0.00 0.00 4.92
746 809 1.002792 GTCCTTTTCGTTGACTGCCAC 60.003 52.381 0.00 0.00 0.00 5.01
747 810 1.021202 CCTTTTCGTTGACTGCCACA 58.979 50.000 0.00 0.00 0.00 4.17
748 811 1.002468 CCTTTTCGTTGACTGCCACAG 60.002 52.381 0.00 0.00 37.52 3.66
750 813 1.013596 TTTCGTTGACTGCCACAGTG 58.986 50.000 4.71 0.00 45.44 3.66
751 814 0.813610 TTCGTTGACTGCCACAGTGG 60.814 55.000 16.16 16.16 45.44 4.00
769 832 2.969827 CCCCGCGGCAAGAAAAAT 59.030 55.556 22.85 0.00 0.00 1.82
770 833 1.153842 CCCCGCGGCAAGAAAAATC 60.154 57.895 22.85 0.00 0.00 2.17
771 834 1.595093 CCCCGCGGCAAGAAAAATCT 61.595 55.000 22.85 0.00 0.00 2.40
772 835 0.179163 CCCGCGGCAAGAAAAATCTC 60.179 55.000 22.85 0.00 0.00 2.75
773 836 0.521291 CCGCGGCAAGAAAAATCTCA 59.479 50.000 14.67 0.00 0.00 3.27
774 837 1.133025 CCGCGGCAAGAAAAATCTCAT 59.867 47.619 14.67 0.00 0.00 2.90
775 838 2.444351 CGCGGCAAGAAAAATCTCATC 58.556 47.619 0.00 0.00 0.00 2.92
776 839 2.096496 CGCGGCAAGAAAAATCTCATCT 59.904 45.455 0.00 0.00 0.00 2.90
777 840 3.689346 GCGGCAAGAAAAATCTCATCTC 58.311 45.455 0.00 0.00 0.00 2.75
778 841 3.127548 GCGGCAAGAAAAATCTCATCTCA 59.872 43.478 0.00 0.00 0.00 3.27
779 842 4.201990 GCGGCAAGAAAAATCTCATCTCAT 60.202 41.667 0.00 0.00 0.00 2.90
780 843 5.508872 CGGCAAGAAAAATCTCATCTCATC 58.491 41.667 0.00 0.00 0.00 2.92
781 844 5.065602 CGGCAAGAAAAATCTCATCTCATCA 59.934 40.000 0.00 0.00 0.00 3.07
782 845 6.264088 GGCAAGAAAAATCTCATCTCATCAC 58.736 40.000 0.00 0.00 0.00 3.06
783 846 6.127814 GGCAAGAAAAATCTCATCTCATCACA 60.128 38.462 0.00 0.00 0.00 3.58
784 847 7.310664 GCAAGAAAAATCTCATCTCATCACAA 58.689 34.615 0.00 0.00 0.00 3.33
785 848 7.485277 GCAAGAAAAATCTCATCTCATCACAAG 59.515 37.037 0.00 0.00 0.00 3.16
786 849 7.627298 AGAAAAATCTCATCTCATCACAAGG 57.373 36.000 0.00 0.00 0.00 3.61
787 850 7.400439 AGAAAAATCTCATCTCATCACAAGGA 58.600 34.615 0.00 0.00 0.00 3.36
788 851 7.886970 AGAAAAATCTCATCTCATCACAAGGAA 59.113 33.333 0.00 0.00 0.00 3.36
789 852 8.591114 AAAAATCTCATCTCATCACAAGGAAT 57.409 30.769 0.00 0.00 0.00 3.01
790 853 8.591114 AAAATCTCATCTCATCACAAGGAATT 57.409 30.769 0.00 0.00 0.00 2.17
791 854 7.569639 AATCTCATCTCATCACAAGGAATTG 57.430 36.000 0.00 0.00 0.00 2.32
792 855 4.880120 TCTCATCTCATCACAAGGAATTGC 59.120 41.667 0.00 0.00 0.00 3.56
793 856 4.591929 TCATCTCATCACAAGGAATTGCA 58.408 39.130 0.00 0.00 0.00 4.08
794 857 4.638865 TCATCTCATCACAAGGAATTGCAG 59.361 41.667 0.00 0.00 0.00 4.41
795 858 2.751259 TCTCATCACAAGGAATTGCAGC 59.249 45.455 0.00 0.00 0.00 5.25
796 859 2.753452 CTCATCACAAGGAATTGCAGCT 59.247 45.455 0.00 0.00 0.00 4.24
797 860 2.751259 TCATCACAAGGAATTGCAGCTC 59.249 45.455 0.00 0.00 0.00 4.09
798 861 1.538047 TCACAAGGAATTGCAGCTCC 58.462 50.000 7.86 7.86 0.00 4.70
831 894 4.447724 CGATCAACTTTGACTCGAAAAGGA 59.552 41.667 11.65 2.48 40.49 3.36
832 895 5.612709 CGATCAACTTTGACTCGAAAAGGAC 60.613 44.000 11.65 0.00 40.49 3.85
836 899 4.685924 ACTTTGACTCGAAAAGGACGTAA 58.314 39.130 11.65 0.00 38.66 3.18
837 900 4.505556 ACTTTGACTCGAAAAGGACGTAAC 59.494 41.667 11.65 0.00 38.66 2.50
839 902 2.361757 TGACTCGAAAAGGACGTAACCA 59.638 45.455 0.00 0.00 0.00 3.67
840 903 2.728318 GACTCGAAAAGGACGTAACCAC 59.272 50.000 0.00 0.00 0.00 4.16
842 905 3.181472 ACTCGAAAAGGACGTAACCACTT 60.181 43.478 0.00 0.00 0.00 3.16
843 906 3.125316 TCGAAAAGGACGTAACCACTTG 58.875 45.455 0.00 0.00 0.00 3.16
845 908 1.223187 AAAGGACGTAACCACTTGCG 58.777 50.000 0.00 0.00 40.91 4.85
847 910 2.468532 GACGTAACCACTTGCGCG 59.531 61.111 0.00 0.00 38.92 6.86
864 1058 3.737172 GTGCATGCACCCGTGGAC 61.737 66.667 35.69 12.07 41.15 4.02
865 1059 3.952508 TGCATGCACCCGTGGACT 61.953 61.111 18.46 0.00 32.58 3.85
867 1061 2.747460 CATGCACCCGTGGACTGG 60.747 66.667 0.00 0.00 32.58 4.00
868 1062 2.927856 ATGCACCCGTGGACTGGA 60.928 61.111 0.00 0.00 32.58 3.86
869 1063 3.254024 ATGCACCCGTGGACTGGAC 62.254 63.158 0.00 0.00 32.58 4.02
875 1069 2.184322 CGTGGACTGGACGGATGG 59.816 66.667 0.00 0.00 33.08 3.51
877 1071 1.987855 GTGGACTGGACGGATGGGA 60.988 63.158 0.00 0.00 0.00 4.37
878 1072 1.002921 TGGACTGGACGGATGGGAT 59.997 57.895 0.00 0.00 0.00 3.85
879 1073 1.337384 TGGACTGGACGGATGGGATG 61.337 60.000 0.00 0.00 0.00 3.51
885 1079 2.692368 ACGGATGGGATGGTGGCT 60.692 61.111 0.00 0.00 0.00 4.75
901 1095 4.746951 CTGTGGCGCGTCGTCGTA 62.747 66.667 6.09 0.00 39.49 3.43
902 1096 4.746951 TGTGGCGCGTCGTCGTAG 62.747 66.667 6.09 0.00 39.49 3.51
907 1101 4.156622 CGCGTCGTCGTAGCCTGA 62.157 66.667 0.00 0.00 39.49 3.86
908 1102 2.576317 GCGTCGTCGTAGCCTGAC 60.576 66.667 3.66 0.00 39.49 3.51
941 1135 0.674581 TCAGCAACTCGGCCATCTTG 60.675 55.000 2.24 0.78 0.00 3.02
954 1148 2.650116 ATCTTGGCCGTCAGTCGCT 61.650 57.895 0.00 0.00 38.35 4.93
981 1180 2.676471 CTGCCAAGGAAACCCCGG 60.676 66.667 0.00 0.00 40.87 5.73
1025 1224 1.932511 GCTGCTACAGTGATGCTTCTC 59.067 52.381 0.00 0.00 33.43 2.87
1091 1290 3.844090 GAGGCCTCCTCCTGCGAC 61.844 72.222 23.19 0.00 44.36 5.19
1134 1333 2.665000 CTTTCCAGGCGAGCCTCA 59.335 61.111 14.59 0.56 46.28 3.86
1533 1748 8.930760 TGTAAACTGGTTCAAGTTTTCAAATTG 58.069 29.630 10.08 0.00 45.84 2.32
1545 1760 2.282887 AAATTGCCCCGGCGTCTT 60.283 55.556 6.01 0.00 45.51 3.01
1546 1761 2.340328 AAATTGCCCCGGCGTCTTC 61.340 57.895 6.01 0.00 45.51 2.87
1554 1769 2.505498 CCGGCGTCTTCGAATGTCG 61.505 63.158 6.01 10.93 42.10 4.35
1555 1770 2.505498 CGGCGTCTTCGAATGTCGG 61.505 63.158 0.00 0.00 40.88 4.79
1559 1774 0.109458 CGTCTTCGAATGTCGGGTCA 60.109 55.000 0.00 0.00 40.88 4.02
1744 1959 4.961511 GACGCCGTCACAGTGCCA 62.962 66.667 13.23 0.00 32.09 4.92
1778 1993 0.817634 CCCTCCTCGTGCAAACAACA 60.818 55.000 0.00 0.00 0.00 3.33
1817 2032 1.073763 CCCCGATGGATCATGGCTTTA 59.926 52.381 0.00 0.00 35.39 1.85
1865 2080 4.867599 CGGCCGTTCTACGAGGGC 62.868 72.222 19.50 0.23 46.05 5.19
1866 2081 3.459063 GGCCGTTCTACGAGGGCT 61.459 66.667 8.29 0.00 46.05 5.19
1929 2144 0.392461 GCCGCCATCTGTAACTCCAA 60.392 55.000 0.00 0.00 0.00 3.53
1971 2186 6.062095 AGCACCTACTACACACTTTCAATTT 58.938 36.000 0.00 0.00 0.00 1.82
1980 2195 9.878599 ACTACACACTTTCAATTTTTATCTTCG 57.121 29.630 0.00 0.00 0.00 3.79
1985 2200 8.076178 ACACTTTCAATTTTTATCTTCGTCTGG 58.924 33.333 0.00 0.00 0.00 3.86
1987 2202 9.014297 ACTTTCAATTTTTATCTTCGTCTGGAT 57.986 29.630 0.00 0.00 0.00 3.41
1993 2211 9.449719 AATTTTTATCTTCGTCTGGATAACTGT 57.550 29.630 0.00 0.00 35.14 3.55
2026 2244 3.940657 GCTTGCTTAGCTCATACTGTG 57.059 47.619 5.60 0.00 46.77 3.66
2027 2245 2.031437 GCTTGCTTAGCTCATACTGTGC 59.969 50.000 5.60 0.00 46.77 4.57
2093 2475 2.676748 TGGTGTTGCAGGGAAGAAAAT 58.323 42.857 0.00 0.00 0.00 1.82
2099 2481 3.228188 TGCAGGGAAGAAAATGAGTGT 57.772 42.857 0.00 0.00 0.00 3.55
2112 2494 4.414337 AATGAGTGTAGCAGGAATCTCC 57.586 45.455 0.00 0.00 36.58 3.71
2114 2496 1.751924 GAGTGTAGCAGGAATCTCCGT 59.248 52.381 0.00 0.00 42.75 4.69
2123 2505 0.394352 GGAATCTCCGTGGGCATTGT 60.394 55.000 0.00 0.00 0.00 2.71
2146 2531 3.334691 TGTTCCGTCCTCTTGCTATTTG 58.665 45.455 0.00 0.00 0.00 2.32
2160 2545 7.262048 TCTTGCTATTTGTTCTTTCGGTTTTT 58.738 30.769 0.00 0.00 0.00 1.94
2196 2581 6.859112 TTCAAGAGAAGGACTACTAAGCAT 57.141 37.500 0.00 0.00 0.00 3.79
2202 2587 6.665680 AGAGAAGGACTACTAAGCATTCAGAA 59.334 38.462 0.00 0.00 0.00 3.02
2230 2617 3.430236 CCACCGTGAGTAGCATAACATCA 60.430 47.826 0.00 0.00 0.00 3.07
2432 2824 8.899771 GGCATTGTGTACAAGGTAAGTAAATAT 58.100 33.333 10.56 0.00 39.56 1.28
2463 2857 2.028112 CCGGGTGGGTGATATCAGTATG 60.028 54.545 5.42 0.00 37.54 2.39
2481 2875 1.434188 TGCCACCTTCTCTGAGGAAA 58.566 50.000 4.59 0.00 39.25 3.13
2548 2954 2.294449 AGAAGCTTTTGGGAGGAACC 57.706 50.000 0.00 0.00 38.08 3.62
2554 2960 2.420466 TTTTGGGAGGAACCGGGAGC 62.420 60.000 6.32 0.00 40.11 4.70
2713 3119 7.956558 TCGACAACTTTCTATTCGGTATTTTC 58.043 34.615 0.00 0.00 0.00 2.29
2736 3142 1.620819 TCTTCACTCACCTCTCTTGCC 59.379 52.381 0.00 0.00 0.00 4.52
2740 3146 0.907230 ACTCACCTCTCTTGCCCTCC 60.907 60.000 0.00 0.00 0.00 4.30
2742 3148 0.473694 TCACCTCTCTTGCCCTCCAA 60.474 55.000 0.00 0.00 0.00 3.53
2743 3149 0.622665 CACCTCTCTTGCCCTCCAAT 59.377 55.000 0.00 0.00 31.91 3.16
2744 3150 1.839994 CACCTCTCTTGCCCTCCAATA 59.160 52.381 0.00 0.00 31.91 1.90
2745 3151 2.122768 ACCTCTCTTGCCCTCCAATAG 58.877 52.381 0.00 0.00 31.91 1.73
2746 3152 2.293184 ACCTCTCTTGCCCTCCAATAGA 60.293 50.000 0.00 0.00 35.16 1.98
2747 3153 2.103941 CCTCTCTTGCCCTCCAATAGAC 59.896 54.545 0.00 0.00 33.32 2.59
2756 3217 4.227300 TGCCCTCCAATAGACTTTATGTGT 59.773 41.667 0.00 0.00 0.00 3.72
2757 3218 5.193679 GCCCTCCAATAGACTTTATGTGTT 58.806 41.667 0.00 0.00 0.00 3.32
2771 3232 9.906660 GACTTTATGTGTTATGGATGAAAACAA 57.093 29.630 0.00 0.00 35.08 2.83
2778 3239 9.605275 TGTGTTATGGATGAAAACAAAATTTGA 57.395 25.926 13.19 0.00 35.08 2.69
2779 3240 9.862585 GTGTTATGGATGAAAACAAAATTTGAC 57.137 29.630 13.19 2.09 35.08 3.18
2780 3241 9.605275 TGTTATGGATGAAAACAAAATTTGACA 57.395 25.926 13.19 7.28 30.54 3.58
2782 3243 9.829507 TTATGGATGAAAACAAAATTTGACAGT 57.170 25.926 13.19 0.00 0.00 3.55
2783 3244 8.735692 ATGGATGAAAACAAAATTTGACAGTT 57.264 26.923 13.19 0.77 0.00 3.16
2784 3245 8.195617 TGGATGAAAACAAAATTTGACAGTTC 57.804 30.769 13.19 9.74 0.00 3.01
2785 3246 7.821359 TGGATGAAAACAAAATTTGACAGTTCA 59.179 29.630 13.19 14.21 0.00 3.18
2786 3247 8.829612 GGATGAAAACAAAATTTGACAGTTCAT 58.170 29.630 13.19 17.49 35.32 2.57
2792 3253 9.736023 AAACAAAATTTGACAGTTCATAGACTC 57.264 29.630 13.19 0.00 0.00 3.36
2798 3259 4.082125 TGACAGTTCATAGACTCTGCAGA 58.918 43.478 17.19 17.19 0.00 4.26
2802 3263 6.291377 ACAGTTCATAGACTCTGCAGAAAAA 58.709 36.000 18.85 4.04 0.00 1.94
2807 3268 7.566760 TCATAGACTCTGCAGAAAAACAAAA 57.433 32.000 18.85 0.00 0.00 2.44
2812 3273 5.964758 ACTCTGCAGAAAAACAAAACATGA 58.035 33.333 18.85 0.00 0.00 3.07
2813 3274 6.397272 ACTCTGCAGAAAAACAAAACATGAA 58.603 32.000 18.85 0.00 0.00 2.57
2817 3278 9.376075 TCTGCAGAAAAACAAAACATGAATAAA 57.624 25.926 15.67 0.00 0.00 1.40
2856 3325 8.770828 GCTATACACTGAACTTTCACTGTTTAA 58.229 33.333 8.84 0.00 36.26 1.52
2886 3453 6.681729 AAATATGTACTGTATCATCCCGGT 57.318 37.500 0.00 0.00 0.00 5.28
2888 3455 7.973048 AATATGTACTGTATCATCCCGGTAT 57.027 36.000 0.00 0.00 0.00 2.73
2901 3471 7.235935 TCATCCCGGTATAATAAGTTACCAG 57.764 40.000 0.00 0.00 38.20 4.00
2903 3473 6.906157 TCCCGGTATAATAAGTTACCAGAG 57.094 41.667 0.00 0.00 38.20 3.35
2906 3476 5.245526 CCGGTATAATAAGTTACCAGAGCCT 59.754 44.000 0.00 0.00 38.20 4.58
2909 3479 7.392673 CGGTATAATAAGTTACCAGAGCCTAGA 59.607 40.741 0.00 0.00 38.20 2.43
2956 3526 8.350852 AGTTGAGTTATATAATACTCCCTCCG 57.649 38.462 10.67 0.00 40.00 4.63
2958 3528 8.583296 GTTGAGTTATATAATACTCCCTCCGTT 58.417 37.037 10.67 0.00 40.00 4.44
2959 3529 8.345724 TGAGTTATATAATACTCCCTCCGTTC 57.654 38.462 10.67 0.00 40.00 3.95
2960 3530 7.120285 TGAGTTATATAATACTCCCTCCGTTCG 59.880 40.741 10.67 0.00 40.00 3.95
2961 3531 6.376581 AGTTATATAATACTCCCTCCGTTCGG 59.623 42.308 4.74 4.74 0.00 4.30
2962 3532 2.734755 TAATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
2963 3533 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
2966 3536 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2967 3537 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2969 3539 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2970 3540 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2971 3541 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2972 3542 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2973 3543 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2974 3544 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2975 3545 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2976 3546 2.156117 CGTTCGGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
2977 3547 3.363182 CGTTCGGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
2978 3548 4.529446 GTTCGGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
2979 3549 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
2980 3550 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
2981 3551 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
2982 3552 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
2983 3553 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
2984 3554 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
2985 3555 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
2986 3556 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
2987 3557 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
2988 3558 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
2989 3559 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
2990 3560 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
2991 3561 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
2992 3562 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
2993 3563 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
2994 3564 6.257849 TGTCGCAAAAATGGATGTATCTAGAC 59.742 38.462 0.00 0.00 0.00 2.59
2995 3565 5.758296 TCGCAAAAATGGATGTATCTAGACC 59.242 40.000 0.00 0.00 0.00 3.85
2996 3566 5.760253 CGCAAAAATGGATGTATCTAGACCT 59.240 40.000 0.00 0.00 0.00 3.85
2997 3567 6.929049 CGCAAAAATGGATGTATCTAGACCTA 59.071 38.462 0.00 0.00 0.00 3.08
2998 3568 7.095607 CGCAAAAATGGATGTATCTAGACCTAC 60.096 40.741 0.00 0.00 0.00 3.18
2999 3569 7.095607 GCAAAAATGGATGTATCTAGACCTACG 60.096 40.741 0.00 0.00 0.00 3.51
3000 3570 7.598759 AAAATGGATGTATCTAGACCTACGT 57.401 36.000 0.00 0.00 0.00 3.57
3001 3571 6.821031 AATGGATGTATCTAGACCTACGTC 57.179 41.667 13.85 13.85 39.50 4.34
3015 3585 6.821031 GACCTACGTCTAGATACATCCATT 57.179 41.667 0.00 0.00 35.99 3.16
3016 3586 7.216973 GACCTACGTCTAGATACATCCATTT 57.783 40.000 0.00 0.00 35.99 2.32
3017 3587 7.598759 ACCTACGTCTAGATACATCCATTTT 57.401 36.000 0.00 0.00 0.00 1.82
3018 3588 8.019656 ACCTACGTCTAGATACATCCATTTTT 57.980 34.615 0.00 0.00 0.00 1.94
3019 3589 7.926555 ACCTACGTCTAGATACATCCATTTTTG 59.073 37.037 0.00 0.00 0.00 2.44
3020 3590 6.604735 ACGTCTAGATACATCCATTTTTGC 57.395 37.500 0.00 0.00 0.00 3.68
3021 3591 5.234329 ACGTCTAGATACATCCATTTTTGCG 59.766 40.000 0.00 0.00 0.00 4.85
3022 3592 5.462068 CGTCTAGATACATCCATTTTTGCGA 59.538 40.000 0.00 0.00 0.00 5.10
3023 3593 6.562270 CGTCTAGATACATCCATTTTTGCGAC 60.562 42.308 0.00 0.00 0.00 5.19
3024 3594 6.257849 GTCTAGATACATCCATTTTTGCGACA 59.742 38.462 0.00 0.00 0.00 4.35
3025 3595 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
3026 3596 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
3027 3597 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
3028 3598 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
3029 3599 5.046910 ACATCCATTTTTGCGACAAGTAG 57.953 39.130 0.00 0.00 0.00 2.57
3030 3600 4.518970 ACATCCATTTTTGCGACAAGTAGT 59.481 37.500 0.00 0.00 0.00 2.73
3031 3601 5.009610 ACATCCATTTTTGCGACAAGTAGTT 59.990 36.000 0.00 0.00 0.00 2.24
3032 3602 5.103290 TCCATTTTTGCGACAAGTAGTTC 57.897 39.130 0.00 0.00 0.00 3.01
3033 3603 4.023536 TCCATTTTTGCGACAAGTAGTTCC 60.024 41.667 0.00 0.00 0.00 3.62
3034 3604 3.595709 TTTTTGCGACAAGTAGTTCCG 57.404 42.857 0.00 0.00 0.00 4.30
3035 3605 2.512485 TTTGCGACAAGTAGTTCCGA 57.488 45.000 5.96 0.00 0.00 4.55
3036 3606 2.512485 TTGCGACAAGTAGTTCCGAA 57.488 45.000 5.96 0.00 0.00 4.30
3037 3607 1.774639 TGCGACAAGTAGTTCCGAAC 58.225 50.000 2.81 2.81 0.00 3.95
3038 3608 0.706729 GCGACAAGTAGTTCCGAACG 59.293 55.000 5.62 0.00 36.23 3.95
3039 3609 1.334054 CGACAAGTAGTTCCGAACGG 58.666 55.000 6.94 6.94 36.23 4.44
3040 3610 1.069022 CGACAAGTAGTTCCGAACGGA 60.069 52.381 12.04 12.04 43.52 4.69
3041 3611 2.593257 GACAAGTAGTTCCGAACGGAG 58.407 52.381 15.34 5.60 46.06 4.63
3042 3612 1.271656 ACAAGTAGTTCCGAACGGAGG 59.728 52.381 15.34 4.52 46.06 4.30
3043 3613 0.893447 AAGTAGTTCCGAACGGAGGG 59.107 55.000 15.34 0.00 46.06 4.30
3044 3614 0.038744 AGTAGTTCCGAACGGAGGGA 59.961 55.000 15.34 0.00 46.06 4.20
3045 3615 0.455005 GTAGTTCCGAACGGAGGGAG 59.545 60.000 15.34 0.00 46.06 4.30
3046 3616 0.038744 TAGTTCCGAACGGAGGGAGT 59.961 55.000 15.34 7.38 46.06 3.85
3047 3617 0.038744 AGTTCCGAACGGAGGGAGTA 59.961 55.000 15.34 0.00 46.06 2.59
3058 3628 5.470047 ACGGAGGGAGTATATGATTGTTC 57.530 43.478 0.00 0.00 0.00 3.18
3060 3630 5.244178 ACGGAGGGAGTATATGATTGTTCTC 59.756 44.000 0.00 0.00 0.00 2.87
3061 3631 5.478679 CGGAGGGAGTATATGATTGTTCTCT 59.521 44.000 0.00 0.00 0.00 3.10
3079 3649 4.431378 TCTCTATTTACCTTCCACCACCA 58.569 43.478 0.00 0.00 0.00 4.17
3082 3652 5.318630 TCTATTTACCTTCCACCACCAAAC 58.681 41.667 0.00 0.00 0.00 2.93
3085 3655 1.703411 ACCTTCCACCACCAAACATG 58.297 50.000 0.00 0.00 0.00 3.21
3086 3656 0.968405 CCTTCCACCACCAAACATGG 59.032 55.000 0.00 0.00 43.43 3.66
3087 3657 1.480312 CCTTCCACCACCAAACATGGA 60.480 52.381 1.10 0.00 39.87 3.41
3088 3658 2.528564 CTTCCACCACCAAACATGGAT 58.471 47.619 1.10 0.00 40.87 3.41
3089 3659 2.692709 TCCACCACCAAACATGGATT 57.307 45.000 1.10 0.00 39.87 3.01
3090 3660 2.969628 TCCACCACCAAACATGGATTT 58.030 42.857 1.10 0.00 39.87 2.17
3091 3661 4.119556 TCCACCACCAAACATGGATTTA 57.880 40.909 1.10 0.00 39.87 1.40
3092 3662 4.085733 TCCACCACCAAACATGGATTTAG 58.914 43.478 1.10 0.00 39.87 1.85
3093 3663 3.368323 CCACCACCAAACATGGATTTAGC 60.368 47.826 1.10 0.00 39.87 3.09
3095 3665 4.081531 CACCACCAAACATGGATTTAGCAT 60.082 41.667 1.10 0.00 39.87 3.79
3101 3673 5.352016 CCAAACATGGATTTAGCATTTGTGG 59.648 40.000 0.00 0.00 0.00 4.17
3113 3685 3.055891 AGCATTTGTGGGCAATAGAAACC 60.056 43.478 0.00 0.00 34.18 3.27
3125 3697 5.461526 GCAATAGAAACCAGTGAGGAAAAC 58.538 41.667 0.00 0.00 41.22 2.43
3139 3711 0.312102 GAAAACACACTGAGCTGGGC 59.688 55.000 0.00 0.00 0.00 5.36
3179 3751 2.190538 CTTGGGATTGCCAAGGGAATT 58.809 47.619 24.93 0.00 40.42 2.17
3185 3757 4.164030 GGGATTGCCAAGGGAATTTTGTAT 59.836 41.667 7.30 0.00 36.32 2.29
3352 3924 8.893837 GCTAGAGCTGTTGGAACACTGTAAGT 62.894 46.154 0.00 0.00 43.71 2.24
3369 3941 6.726490 TGTAAGTTCATACCTCCTGTATCC 57.274 41.667 0.00 0.00 38.10 2.59
3370 3942 6.199376 TGTAAGTTCATACCTCCTGTATCCA 58.801 40.000 0.00 0.00 38.10 3.41
3372 3944 6.636454 AAGTTCATACCTCCTGTATCCAAA 57.364 37.500 0.00 0.00 38.10 3.28
3373 3945 6.240549 AGTTCATACCTCCTGTATCCAAAG 57.759 41.667 0.00 0.00 38.10 2.77
3374 3946 5.726793 AGTTCATACCTCCTGTATCCAAAGT 59.273 40.000 0.00 0.00 38.10 2.66
3375 3947 6.215636 AGTTCATACCTCCTGTATCCAAAGTT 59.784 38.462 0.00 0.00 38.10 2.66
3380 3952 4.105697 ACCTCCTGTATCCAAAGTTTCCAA 59.894 41.667 0.00 0.00 0.00 3.53
3381 3953 4.459337 CCTCCTGTATCCAAAGTTTCCAAC 59.541 45.833 0.00 0.00 0.00 3.77
3382 3954 4.069304 TCCTGTATCCAAAGTTTCCAACG 58.931 43.478 0.00 0.00 36.23 4.10
3383 3955 3.818773 CCTGTATCCAAAGTTTCCAACGT 59.181 43.478 0.00 0.00 36.23 3.99
3384 3956 4.277423 CCTGTATCCAAAGTTTCCAACGTT 59.723 41.667 0.00 0.00 36.23 3.99
3386 3958 4.882427 TGTATCCAAAGTTTCCAACGTTCA 59.118 37.500 0.00 0.00 36.23 3.18
3387 3959 3.768468 TCCAAAGTTTCCAACGTTCAC 57.232 42.857 0.00 0.00 36.23 3.18
3388 3960 2.096174 TCCAAAGTTTCCAACGTTCACG 59.904 45.455 0.00 0.00 46.33 4.35
3391 3985 4.159857 CAAAGTTTCCAACGTTCACGAAA 58.840 39.130 6.30 4.25 43.02 3.46
3395 3989 2.027003 TCCAACGTTCACGAAACCTT 57.973 45.000 6.30 0.00 43.02 3.50
3504 4098 3.564225 GTGTCTTGGTCCTCGAAATTGTT 59.436 43.478 0.00 0.00 0.00 2.83
3508 4102 4.994852 TCTTGGTCCTCGAAATTGTTACTG 59.005 41.667 0.00 0.00 0.00 2.74
3599 4193 8.715191 TTTACTTGATTTTTGTTGCATCTGTT 57.285 26.923 0.00 0.00 0.00 3.16
3605 4199 4.979943 TTTTGTTGCATCTGTTCACTGA 57.020 36.364 0.00 0.00 0.00 3.41
3607 4201 4.979943 TTGTTGCATCTGTTCACTGAAA 57.020 36.364 0.00 0.00 0.00 2.69
3610 4204 4.398988 TGTTGCATCTGTTCACTGAAAACT 59.601 37.500 0.00 0.00 0.00 2.66
3611 4205 4.556942 TGCATCTGTTCACTGAAAACTG 57.443 40.909 0.00 0.00 0.00 3.16
3612 4206 4.198530 TGCATCTGTTCACTGAAAACTGA 58.801 39.130 0.00 8.15 38.43 3.41
3613 4207 4.639755 TGCATCTGTTCACTGAAAACTGAA 59.360 37.500 0.00 0.00 37.86 3.02
3614 4208 5.125257 TGCATCTGTTCACTGAAAACTGAAA 59.875 36.000 0.00 0.59 37.86 2.69
3615 4209 6.035843 GCATCTGTTCACTGAAAACTGAAAA 58.964 36.000 0.00 0.00 37.86 2.29
3617 4211 7.475015 CATCTGTTCACTGAAAACTGAAAAGA 58.525 34.615 3.36 3.36 42.41 2.52
3621 4215 8.519492 TGTTCACTGAAAACTGAAAAGAAAAG 57.481 30.769 0.00 0.00 0.00 2.27
3622 4216 8.356657 TGTTCACTGAAAACTGAAAAGAAAAGA 58.643 29.630 0.00 0.00 0.00 2.52
3623 4217 8.639428 GTTCACTGAAAACTGAAAAGAAAAGAC 58.361 33.333 0.00 0.00 0.00 3.01
3625 4219 8.237267 TCACTGAAAACTGAAAAGAAAAGACTC 58.763 33.333 0.00 0.00 0.00 3.36
3626 4220 8.023128 CACTGAAAACTGAAAAGAAAAGACTCA 58.977 33.333 0.00 0.00 0.00 3.41
3628 4222 9.578439 CTGAAAACTGAAAAGAAAAGACTCATT 57.422 29.630 0.00 0.00 0.00 2.57
3629 4223 9.357652 TGAAAACTGAAAAGAAAAGACTCATTG 57.642 29.630 0.00 0.00 0.00 2.82
3630 4224 9.573133 GAAAACTGAAAAGAAAAGACTCATTGA 57.427 29.630 0.00 0.00 0.00 2.57
3632 4226 9.525409 AAACTGAAAAGAAAAGACTCATTGATG 57.475 29.630 0.00 0.00 0.00 3.07
3633 4227 8.230472 ACTGAAAAGAAAAGACTCATTGATGT 57.770 30.769 0.00 0.00 0.00 3.06
3634 4228 9.342308 ACTGAAAAGAAAAGACTCATTGATGTA 57.658 29.630 0.00 0.00 0.00 2.29
3645 4239 9.647797 AAGACTCATTGATGTAAATTACGTACA 57.352 29.630 0.00 0.00 35.98 2.90
3647 4241 9.849607 GACTCATTGATGTAAATTACGTACATG 57.150 33.333 5.65 4.37 41.24 3.21
3648 4242 8.335356 ACTCATTGATGTAAATTACGTACATGC 58.665 33.333 5.65 0.00 41.24 4.06
3649 4243 7.635423 TCATTGATGTAAATTACGTACATGCC 58.365 34.615 5.65 0.00 41.24 4.40
3650 4244 6.986904 TTGATGTAAATTACGTACATGCCA 57.013 33.333 5.65 0.00 41.24 4.92
3651 4245 7.561021 TTGATGTAAATTACGTACATGCCAT 57.439 32.000 5.65 1.44 41.24 4.40
3652 4246 6.953843 TGATGTAAATTACGTACATGCCATG 58.046 36.000 2.40 2.40 41.24 3.66
3653 4247 6.540551 TGATGTAAATTACGTACATGCCATGT 59.459 34.615 15.69 15.69 41.24 3.21
3654 4248 6.745159 TGTAAATTACGTACATGCCATGTT 57.255 33.333 16.67 0.23 41.63 2.71
3656 4250 7.024171 TGTAAATTACGTACATGCCATGTTTG 58.976 34.615 16.67 11.15 41.63 2.93
3657 4251 5.888691 AATTACGTACATGCCATGTTTGA 57.111 34.783 16.67 0.00 41.63 2.69
3660 4254 4.875544 ACGTACATGCCATGTTTGATAC 57.124 40.909 16.67 6.62 41.63 2.24
3662 4256 4.332543 ACGTACATGCCATGTTTGATACTG 59.667 41.667 16.67 6.77 41.63 2.74
3663 4257 4.570369 CGTACATGCCATGTTTGATACTGA 59.430 41.667 16.67 0.00 41.63 3.41
3664 4258 4.970662 ACATGCCATGTTTGATACTGAC 57.029 40.909 4.03 0.00 41.63 3.51
3665 4259 4.592942 ACATGCCATGTTTGATACTGACT 58.407 39.130 4.03 0.00 41.63 3.41
3667 4261 6.359804 ACATGCCATGTTTGATACTGACTAT 58.640 36.000 4.03 0.00 41.63 2.12
3694 4368 1.600916 GGTGTGGAACTGCTGGACC 60.601 63.158 0.00 0.00 38.04 4.46
3704 4378 2.111999 CTGCTGGACCAAAGGGACGA 62.112 60.000 0.00 0.00 38.05 4.20
3754 4428 4.749310 CACGCTCGAAGCCAGGCT 62.749 66.667 8.70 8.70 42.56 4.58
4025 4702 1.003355 CGGTGTGATGTTGAGGCCT 60.003 57.895 3.86 3.86 0.00 5.19
4029 4706 2.359900 GTGTGATGTTGAGGCCTAAGG 58.640 52.381 4.42 0.00 0.00 2.69
4039 4716 0.178873 AGGCCTAAGGGGTGAGTTGA 60.179 55.000 1.29 0.00 37.43 3.18
4099 4776 6.399639 TGGTTGTAGAATCCCTTTTGTTTC 57.600 37.500 0.00 0.00 0.00 2.78
4122 4799 0.459585 TTGCTTCGATGTCTACGGGC 60.460 55.000 0.00 0.00 0.00 6.13
4146 4823 6.483640 GCTCAGTTACCCCATTATCTTGTTAG 59.516 42.308 0.00 0.00 0.00 2.34
4210 4887 6.930667 TTTATAAGGTAAAATCGCCTGGAC 57.069 37.500 0.00 0.00 34.90 4.02
4238 4916 1.949525 CTATCCGCCATTTGGTCAAGG 59.050 52.381 0.00 0.00 37.57 3.61
4253 4931 8.815565 TTTGGTCAAGGAATAGTGCAAATATA 57.184 30.769 0.00 0.00 0.00 0.86
4256 4934 8.849168 TGGTCAAGGAATAGTGCAAATATATTG 58.151 33.333 0.00 0.00 0.00 1.90
4257 4935 7.809806 GGTCAAGGAATAGTGCAAATATATTGC 59.190 37.037 6.23 6.23 45.11 3.56
4324 5020 3.275617 AGCATAATAAGCAACACCCGA 57.724 42.857 0.00 0.00 0.00 5.14
4329 5025 0.398696 ATAAGCAACACCCGACCACA 59.601 50.000 0.00 0.00 0.00 4.17
4365 5061 0.992072 CACGACGACACACCATCATC 59.008 55.000 0.00 0.00 0.00 2.92
4366 5062 0.601057 ACGACGACACACCATCATCA 59.399 50.000 0.00 0.00 0.00 3.07
4372 5068 1.726791 GACACACCATCATCACGACAC 59.273 52.381 0.00 0.00 0.00 3.67
4401 5102 3.369546 AACCAACATAACTGCAACAGC 57.630 42.857 0.00 0.00 34.37 4.40
4426 5127 8.405531 GCAAAGCCATAAAAGACTGACATTATA 58.594 33.333 0.00 0.00 0.00 0.98
4444 5147 7.689299 ACATTATACCTATGCCAAAGATGCTA 58.311 34.615 0.00 0.00 0.00 3.49
4453 5156 2.100916 GCCAAAGATGCTAGAGACGGTA 59.899 50.000 0.00 0.00 0.00 4.02
4458 5161 2.172930 AGATGCTAGAGACGGTAGACCA 59.827 50.000 0.00 0.00 35.14 4.02
4460 5163 2.089980 TGCTAGAGACGGTAGACCAAC 58.910 52.381 0.00 0.00 35.14 3.77
4504 5207 2.054232 TTGGGTAAAAACCTGCGTGA 57.946 45.000 0.00 0.00 0.00 4.35
4555 5267 3.022406 GTGAATAGTGGTCGGTACTCCT 58.978 50.000 0.00 0.00 0.00 3.69
4569 5293 5.954150 TCGGTACTCCTTAAGGTGTAGAATT 59.046 40.000 28.50 10.83 42.66 2.17
4590 5316 4.890158 TGACCACATATGAAGTGAGTGT 57.110 40.909 10.38 0.00 39.30 3.55
4595 5321 4.562789 CCACATATGAAGTGAGTGTGTACG 59.437 45.833 10.38 0.00 39.30 3.67
4601 5327 2.682952 AGTGAGTGTGTACGTCGAAG 57.317 50.000 0.00 0.00 0.00 3.79
4621 5347 5.355350 CGAAGAATAACCTGCAAAGGAGAAT 59.645 40.000 0.00 0.00 0.00 2.40
4678 5404 6.371548 GCATAGCCAAATCGACCATAATAAGA 59.628 38.462 0.00 0.00 0.00 2.10
4695 5421 2.463047 AGACATACTCTCCCACCCTC 57.537 55.000 0.00 0.00 0.00 4.30
4702 5428 1.008938 ACTCTCCCACCCTCATTAGCT 59.991 52.381 0.00 0.00 0.00 3.32
4712 5439 6.405842 CCCACCCTCATTAGCTTTTAAACATC 60.406 42.308 0.00 0.00 0.00 3.06
4718 5445 7.761249 CCTCATTAGCTTTTAAACATCTTTGGG 59.239 37.037 0.00 0.00 0.00 4.12
4751 5479 4.104776 GTCAATGACCATAAATGTTGGCG 58.895 43.478 1.10 0.00 37.81 5.69
4761 5489 1.398692 AATGTTGGCGGACACTTGTT 58.601 45.000 0.00 0.00 31.30 2.83
4770 5498 2.939640 GCGGACACTTGTTGGTGGATAT 60.940 50.000 0.00 0.00 41.09 1.63
4780 5535 4.928263 TGTTGGTGGATATGAATTGGACA 58.072 39.130 0.00 0.00 0.00 4.02
4787 5542 8.498575 TGGTGGATATGAATTGGACACTATTTA 58.501 33.333 0.00 0.00 0.00 1.40
4796 5551 7.770433 TGAATTGGACACTATTTAGATGACTGG 59.230 37.037 0.00 0.00 0.00 4.00
4804 5559 8.880244 ACACTATTTAGATGACTGGCCATATAA 58.120 33.333 5.51 0.00 30.94 0.98
4812 5567 1.266718 ACTGGCCATATAAAATGCGCG 59.733 47.619 5.51 0.00 0.00 6.86
4822 5584 6.129820 CCATATAAAATGCGCGTACGAAAAAG 60.130 38.462 21.65 5.15 43.93 2.27
4823 5585 2.953640 AAATGCGCGTACGAAAAAGA 57.046 40.000 21.65 0.00 43.93 2.52
4838 5600 5.043248 CGAAAAAGAAGGTGCTTGATTGTT 58.957 37.500 0.00 0.00 0.00 2.83
4846 5611 3.569701 AGGTGCTTGATTGTTTCGTCATT 59.430 39.130 0.00 0.00 0.00 2.57
4851 5616 7.414098 GGTGCTTGATTGTTTCGTCATTAGTAT 60.414 37.037 0.00 0.00 0.00 2.12
4879 5644 8.409358 AAATTACACTTCTTACTTCCTTGCAT 57.591 30.769 0.00 0.00 0.00 3.96
4884 5649 6.942576 ACACTTCTTACTTCCTTGCATATTGT 59.057 34.615 0.00 0.00 0.00 2.71
4933 5698 0.935194 ACTCCCCTCCGAAGATACCT 59.065 55.000 0.00 0.00 0.00 3.08
4979 5745 8.956426 AGTATAATTTTCGCTCTCCAAATTTCA 58.044 29.630 0.00 0.00 33.28 2.69
5016 5782 3.181521 CGAAATCTCAAAGTGCATGCGTA 60.182 43.478 14.09 0.00 0.00 4.42
5098 5864 0.109132 CCATGACAAAAAGCGAGGGC 60.109 55.000 0.00 0.00 40.37 5.19
5103 5869 0.755327 ACAAAAAGCGAGGGCCAACT 60.755 50.000 6.18 0.00 41.24 3.16
5104 5870 0.318955 CAAAAAGCGAGGGCCAACTG 60.319 55.000 6.18 0.00 41.24 3.16
5108 5874 2.044946 GCGAGGGCCAACTGGATT 60.045 61.111 6.18 0.00 37.39 3.01
5140 5906 3.388350 GGAAATATTCAGAGGGGACGAGT 59.612 47.826 0.00 0.00 0.00 4.18
5143 5909 0.250513 ATTCAGAGGGGACGAGTTGC 59.749 55.000 0.00 0.00 0.00 4.17
5144 5910 1.118965 TTCAGAGGGGACGAGTTGCA 61.119 55.000 0.00 0.00 0.00 4.08
5148 5914 2.110213 GGGGACGAGTTGCACACA 59.890 61.111 0.00 0.00 0.00 3.72
5150 5916 1.298859 GGGGACGAGTTGCACACATC 61.299 60.000 0.00 0.00 0.00 3.06
5151 5917 0.320771 GGGACGAGTTGCACACATCT 60.321 55.000 0.00 0.00 0.00 2.90
5153 5919 0.164647 GACGAGTTGCACACATCTGC 59.835 55.000 0.00 0.00 37.70 4.26
5205 5972 9.920946 ATGTGGTACAAAGTTGGATATTATTCT 57.079 29.630 0.00 0.00 44.16 2.40
5208 5975 7.713507 TGGTACAAAGTTGGATATTATTCTCGG 59.286 37.037 0.00 0.00 31.92 4.63
5217 5984 4.859798 GGATATTATTCTCGGAGACTTGCG 59.140 45.833 7.33 0.00 39.77 4.85
5229 5996 1.621814 AGACTTGCGTTACCTAGCCAA 59.378 47.619 0.00 0.00 0.00 4.52
5232 5999 4.081309 AGACTTGCGTTACCTAGCCAATTA 60.081 41.667 0.00 0.00 0.00 1.40
5239 6006 4.689345 CGTTACCTAGCCAATTATGCTACC 59.311 45.833 5.08 0.00 40.23 3.18
5252 6019 7.201732 CCAATTATGCTACCAGAAACGAATCTT 60.202 37.037 0.00 0.00 0.00 2.40
5253 6020 7.865706 ATTATGCTACCAGAAACGAATCTTT 57.134 32.000 0.00 0.00 0.00 2.52
5258 6025 2.814336 ACCAGAAACGAATCTTTGAGCC 59.186 45.455 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
436 493 2.798148 CTAGCCCGGACCGCTTTTGT 62.798 60.000 8.86 0.00 37.79 2.83
544 607 1.218047 CGGTGGGAATTCGCTGAGA 59.782 57.895 21.56 0.33 0.00 3.27
620 683 0.035439 AAATCCCGGTCGATTGCACT 60.035 50.000 6.70 0.00 32.75 4.40
702 765 7.547227 ACAATCAACTTGCACTAACTCTTTTT 58.453 30.769 0.00 0.00 38.50 1.94
703 766 7.100458 ACAATCAACTTGCACTAACTCTTTT 57.900 32.000 0.00 0.00 38.50 2.27
704 767 6.238759 GGACAATCAACTTGCACTAACTCTTT 60.239 38.462 0.00 0.00 38.50 2.52
705 768 5.239525 GGACAATCAACTTGCACTAACTCTT 59.760 40.000 0.00 0.00 38.50 2.85
706 769 4.757149 GGACAATCAACTTGCACTAACTCT 59.243 41.667 0.00 0.00 38.50 3.24
707 770 4.757149 AGGACAATCAACTTGCACTAACTC 59.243 41.667 0.00 0.00 38.50 3.01
708 771 4.718961 AGGACAATCAACTTGCACTAACT 58.281 39.130 0.00 0.00 38.50 2.24
709 772 5.438761 AAGGACAATCAACTTGCACTAAC 57.561 39.130 0.00 0.00 38.50 2.34
710 773 6.463995 AAAAGGACAATCAACTTGCACTAA 57.536 33.333 0.00 0.00 38.50 2.24
711 774 5.277779 CGAAAAGGACAATCAACTTGCACTA 60.278 40.000 0.00 0.00 38.50 2.74
712 775 4.498009 CGAAAAGGACAATCAACTTGCACT 60.498 41.667 0.00 0.00 38.50 4.40
713 776 3.730715 CGAAAAGGACAATCAACTTGCAC 59.269 43.478 0.00 0.00 38.50 4.57
714 777 3.380004 ACGAAAAGGACAATCAACTTGCA 59.620 39.130 0.00 0.00 38.50 4.08
715 778 3.964909 ACGAAAAGGACAATCAACTTGC 58.035 40.909 0.00 0.00 38.50 4.01
716 779 5.455525 GTCAACGAAAAGGACAATCAACTTG 59.544 40.000 0.00 0.00 40.90 3.16
717 780 5.357032 AGTCAACGAAAAGGACAATCAACTT 59.643 36.000 0.00 0.00 34.04 2.66
718 781 4.881850 AGTCAACGAAAAGGACAATCAACT 59.118 37.500 0.00 0.00 34.04 3.16
719 782 4.970003 CAGTCAACGAAAAGGACAATCAAC 59.030 41.667 0.00 0.00 34.04 3.18
720 783 4.497340 GCAGTCAACGAAAAGGACAATCAA 60.497 41.667 0.00 0.00 34.04 2.57
721 784 3.003275 GCAGTCAACGAAAAGGACAATCA 59.997 43.478 0.00 0.00 34.04 2.57
722 785 3.555518 GCAGTCAACGAAAAGGACAATC 58.444 45.455 0.00 0.00 34.04 2.67
723 786 2.293399 GGCAGTCAACGAAAAGGACAAT 59.707 45.455 0.00 0.00 34.04 2.71
724 787 1.673920 GGCAGTCAACGAAAAGGACAA 59.326 47.619 0.00 0.00 34.04 3.18
725 788 1.305201 GGCAGTCAACGAAAAGGACA 58.695 50.000 0.00 0.00 34.04 4.02
726 789 1.002792 GTGGCAGTCAACGAAAAGGAC 60.003 52.381 0.00 0.00 0.00 3.85
727 790 1.305201 GTGGCAGTCAACGAAAAGGA 58.695 50.000 0.00 0.00 0.00 3.36
728 791 1.002468 CTGTGGCAGTCAACGAAAAGG 60.002 52.381 0.00 0.00 0.00 3.11
729 792 1.670811 ACTGTGGCAGTCAACGAAAAG 59.329 47.619 0.00 0.00 41.21 2.27
730 793 1.400142 CACTGTGGCAGTCAACGAAAA 59.600 47.619 0.00 0.00 43.43 2.29
731 794 1.013596 CACTGTGGCAGTCAACGAAA 58.986 50.000 0.00 0.00 43.43 3.46
732 795 0.813610 CCACTGTGGCAGTCAACGAA 60.814 55.000 14.87 0.00 43.43 3.85
733 796 1.227527 CCACTGTGGCAGTCAACGA 60.228 57.895 14.87 0.00 43.43 3.85
734 797 3.333414 CCACTGTGGCAGTCAACG 58.667 61.111 14.87 0.00 43.43 4.10
752 815 1.153842 GATTTTTCTTGCCGCGGGG 60.154 57.895 29.38 15.40 0.00 5.73
753 816 0.179163 GAGATTTTTCTTGCCGCGGG 60.179 55.000 29.38 10.87 0.00 6.13
754 817 0.521291 TGAGATTTTTCTTGCCGCGG 59.479 50.000 24.05 24.05 0.00 6.46
755 818 2.096496 AGATGAGATTTTTCTTGCCGCG 59.904 45.455 0.00 0.00 0.00 6.46
756 819 3.127548 TGAGATGAGATTTTTCTTGCCGC 59.872 43.478 0.00 0.00 0.00 6.53
757 820 4.952262 TGAGATGAGATTTTTCTTGCCG 57.048 40.909 0.00 0.00 0.00 5.69
758 821 6.127814 TGTGATGAGATGAGATTTTTCTTGCC 60.128 38.462 0.00 0.00 0.00 4.52
759 822 6.849502 TGTGATGAGATGAGATTTTTCTTGC 58.150 36.000 0.00 0.00 0.00 4.01
760 823 7.968956 CCTTGTGATGAGATGAGATTTTTCTTG 59.031 37.037 0.00 0.00 0.00 3.02
761 824 7.886970 TCCTTGTGATGAGATGAGATTTTTCTT 59.113 33.333 0.00 0.00 0.00 2.52
762 825 7.400439 TCCTTGTGATGAGATGAGATTTTTCT 58.600 34.615 0.00 0.00 0.00 2.52
763 826 7.621428 TCCTTGTGATGAGATGAGATTTTTC 57.379 36.000 0.00 0.00 0.00 2.29
764 827 8.591114 ATTCCTTGTGATGAGATGAGATTTTT 57.409 30.769 0.00 0.00 0.00 1.94
765 828 8.467598 CAATTCCTTGTGATGAGATGAGATTTT 58.532 33.333 0.00 0.00 0.00 1.82
766 829 7.416438 GCAATTCCTTGTGATGAGATGAGATTT 60.416 37.037 0.00 0.00 34.69 2.17
767 830 6.039493 GCAATTCCTTGTGATGAGATGAGATT 59.961 38.462 0.00 0.00 34.69 2.40
768 831 5.531659 GCAATTCCTTGTGATGAGATGAGAT 59.468 40.000 0.00 0.00 34.69 2.75
769 832 4.880120 GCAATTCCTTGTGATGAGATGAGA 59.120 41.667 0.00 0.00 34.69 3.27
770 833 4.638865 TGCAATTCCTTGTGATGAGATGAG 59.361 41.667 0.00 0.00 34.69 2.90
771 834 4.591929 TGCAATTCCTTGTGATGAGATGA 58.408 39.130 0.00 0.00 34.69 2.92
772 835 4.733815 GCTGCAATTCCTTGTGATGAGATG 60.734 45.833 0.00 0.00 34.69 2.90
773 836 3.380637 GCTGCAATTCCTTGTGATGAGAT 59.619 43.478 0.00 0.00 34.69 2.75
774 837 2.751259 GCTGCAATTCCTTGTGATGAGA 59.249 45.455 0.00 0.00 34.69 3.27
775 838 2.753452 AGCTGCAATTCCTTGTGATGAG 59.247 45.455 1.02 0.00 34.69 2.90
776 839 2.751259 GAGCTGCAATTCCTTGTGATGA 59.249 45.455 1.02 0.00 34.69 2.92
777 840 2.159282 GGAGCTGCAATTCCTTGTGATG 60.159 50.000 0.00 0.00 34.69 3.07
778 841 2.097825 GGAGCTGCAATTCCTTGTGAT 58.902 47.619 0.00 0.00 34.69 3.06
779 842 1.538047 GGAGCTGCAATTCCTTGTGA 58.462 50.000 0.00 0.00 34.69 3.58
780 843 0.169672 CGGAGCTGCAATTCCTTGTG 59.830 55.000 5.91 0.00 34.69 3.33
781 844 0.250901 ACGGAGCTGCAATTCCTTGT 60.251 50.000 5.91 3.59 34.69 3.16
782 845 1.667724 CTACGGAGCTGCAATTCCTTG 59.332 52.381 5.91 3.07 35.36 3.61
783 846 1.407437 CCTACGGAGCTGCAATTCCTT 60.407 52.381 5.91 7.30 0.00 3.36
784 847 0.179000 CCTACGGAGCTGCAATTCCT 59.821 55.000 5.91 4.69 0.00 3.36
785 848 1.440145 GCCTACGGAGCTGCAATTCC 61.440 60.000 5.91 6.15 0.00 3.01
786 849 1.766143 CGCCTACGGAGCTGCAATTC 61.766 60.000 5.91 0.00 34.97 2.17
787 850 1.815421 CGCCTACGGAGCTGCAATT 60.815 57.895 5.91 0.00 34.97 2.32
788 851 2.202932 CGCCTACGGAGCTGCAAT 60.203 61.111 5.91 0.00 34.97 3.56
798 861 2.901051 AAGTTGATCGGCCGCCTACG 62.901 60.000 23.51 0.00 39.67 3.51
847 910 3.737172 GTCCACGGGTGCATGCAC 61.737 66.667 37.29 37.29 45.49 4.57
864 1058 1.146930 CACCATCCCATCCGTCCAG 59.853 63.158 0.00 0.00 0.00 3.86
865 1059 2.374525 CCACCATCCCATCCGTCCA 61.375 63.158 0.00 0.00 0.00 4.02
867 1061 2.203209 GCCACCATCCCATCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
868 1062 2.692368 AGCCACCATCCCATCCGT 60.692 61.111 0.00 0.00 0.00 4.69
869 1063 2.203252 CAGCCACCATCCCATCCG 60.203 66.667 0.00 0.00 0.00 4.18
871 1065 1.454479 CCACAGCCACCATCCCATC 60.454 63.158 0.00 0.00 0.00 3.51
872 1066 2.685366 CCACAGCCACCATCCCAT 59.315 61.111 0.00 0.00 0.00 4.00
873 1067 4.365111 GCCACAGCCACCATCCCA 62.365 66.667 0.00 0.00 0.00 4.37
885 1079 4.746951 CTACGACGACGCGCCACA 62.747 66.667 5.73 0.00 43.96 4.17
913 1107 2.033757 AGTTGCTGAGCCTGCCTG 59.966 61.111 0.23 0.00 0.00 4.85
914 1108 2.350514 GAGTTGCTGAGCCTGCCT 59.649 61.111 0.23 0.00 0.00 4.75
915 1109 3.123620 CGAGTTGCTGAGCCTGCC 61.124 66.667 0.23 0.00 0.00 4.85
916 1110 3.123620 CCGAGTTGCTGAGCCTGC 61.124 66.667 0.23 0.00 0.00 4.85
917 1111 3.123620 GCCGAGTTGCTGAGCCTG 61.124 66.667 0.23 0.00 0.00 4.85
918 1112 4.400961 GGCCGAGTTGCTGAGCCT 62.401 66.667 0.23 0.00 40.57 4.58
920 1114 2.437359 ATGGCCGAGTTGCTGAGC 60.437 61.111 0.00 0.00 0.00 4.26
921 1115 0.392193 AAGATGGCCGAGTTGCTGAG 60.392 55.000 0.00 0.00 0.00 3.35
922 1116 0.674581 CAAGATGGCCGAGTTGCTGA 60.675 55.000 0.00 0.00 0.00 4.26
923 1117 1.651240 CCAAGATGGCCGAGTTGCTG 61.651 60.000 0.00 0.00 0.00 4.41
964 1158 2.676471 CCGGGGTTTCCTTGGCAG 60.676 66.667 0.00 0.00 0.00 4.85
1007 1206 2.284263 CGAGAAGCATCACTGTAGCA 57.716 50.000 0.00 0.00 0.00 3.49
1490 1705 0.460311 ACAGAGCCGTAGAAATCCCG 59.540 55.000 0.00 0.00 0.00 5.14
1533 1748 4.832608 ATTCGAAGACGCCGGGGC 62.833 66.667 19.97 11.56 39.58 5.80
1545 1760 1.080093 GTGCTGACCCGACATTCGA 60.080 57.895 0.00 0.00 43.74 3.71
1546 1761 1.354337 CTGTGCTGACCCGACATTCG 61.354 60.000 0.00 0.00 40.07 3.34
1554 1769 2.976490 ATGCTCCCTGTGCTGACCC 61.976 63.158 0.00 0.00 0.00 4.46
1555 1770 1.748122 CATGCTCCCTGTGCTGACC 60.748 63.158 0.00 0.00 0.00 4.02
1559 1774 1.001641 GAACCATGCTCCCTGTGCT 60.002 57.895 0.00 0.00 0.00 4.40
1778 1993 1.303888 CTTGGTGCTGAGCATGGGT 60.304 57.895 11.58 0.00 41.91 4.51
1817 2032 3.501911 AGGTTGCACCAGGCCACT 61.502 61.111 5.01 0.00 41.95 4.00
1865 2080 4.827087 AGCCGCAGCATCGACCAG 62.827 66.667 0.00 0.00 43.56 4.00
1866 2081 4.819761 GAGCCGCAGCATCGACCA 62.820 66.667 0.00 0.00 43.56 4.02
1929 2144 1.903183 GCTACCTGTTCCTCCAGACTT 59.097 52.381 0.00 0.00 34.23 3.01
1971 2186 9.745880 GATAACAGTTATCCAGACGAAGATAAA 57.254 33.333 19.19 0.00 36.87 1.40
1976 2191 8.331022 CAAATGATAACAGTTATCCAGACGAAG 58.669 37.037 24.66 7.99 41.02 3.79
1979 2194 7.492669 AGACAAATGATAACAGTTATCCAGACG 59.507 37.037 24.66 14.47 41.02 4.18
1980 2195 8.607459 CAGACAAATGATAACAGTTATCCAGAC 58.393 37.037 24.66 14.24 41.02 3.51
1985 2200 7.430502 GCAAGCAGACAAATGATAACAGTTATC 59.569 37.037 22.03 22.03 41.86 1.75
1987 2202 6.430925 AGCAAGCAGACAAATGATAACAGTTA 59.569 34.615 0.00 0.00 32.98 2.24
2093 2475 1.751351 CGGAGATTCCTGCTACACTCA 59.249 52.381 0.00 0.00 33.30 3.41
2099 2481 1.686325 GCCCACGGAGATTCCTGCTA 61.686 60.000 0.00 0.00 33.30 3.49
2112 2494 0.662970 CGGAACAAACAATGCCCACG 60.663 55.000 0.00 0.00 0.00 4.94
2114 2496 0.671251 GACGGAACAAACAATGCCCA 59.329 50.000 0.00 0.00 0.00 5.36
2123 2505 3.695830 ATAGCAAGAGGACGGAACAAA 57.304 42.857 0.00 0.00 0.00 2.83
2146 2531 3.855379 ACGAAAGCAAAAACCGAAAGAAC 59.145 39.130 0.00 0.00 0.00 3.01
2160 2545 3.649073 TCTCTTGAATCGAACGAAAGCA 58.351 40.909 0.12 0.00 0.00 3.91
2230 2617 7.013655 CAGCCCTTAAACTGATATAACATGCTT 59.986 37.037 0.00 0.00 35.90 3.91
2368 2760 4.260011 CGAGCTTATTCTTTTCCGAGAAGC 60.260 45.833 0.00 0.00 38.90 3.86
2432 2824 2.203280 CCACCCGGTTGTCTTGCA 60.203 61.111 0.00 0.00 0.00 4.08
2463 2857 1.625818 TCTTTCCTCAGAGAAGGTGGC 59.374 52.381 0.00 0.00 37.69 5.01
2481 2875 1.834263 GTATCCCCTGCAACAGAGTCT 59.166 52.381 0.00 0.00 32.44 3.24
2548 2954 2.745884 TGATGCAAACCGCTCCCG 60.746 61.111 0.00 0.00 43.06 5.14
2713 3119 2.230130 AGAGAGGTGAGTGAAGAGGG 57.770 55.000 0.00 0.00 0.00 4.30
2736 3142 8.210946 TCCATAACACATAAAGTCTATTGGAGG 58.789 37.037 0.00 0.00 0.00 4.30
2744 3150 9.295825 TGTTTTCATCCATAACACATAAAGTCT 57.704 29.630 0.00 0.00 0.00 3.24
2745 3151 9.906660 TTGTTTTCATCCATAACACATAAAGTC 57.093 29.630 0.00 0.00 32.00 3.01
2756 3217 9.829507 ACTGTCAAATTTTGTTTTCATCCATAA 57.170 25.926 8.89 0.00 0.00 1.90
2757 3218 9.829507 AACTGTCAAATTTTGTTTTCATCCATA 57.170 25.926 8.89 0.00 0.00 2.74
2766 3227 9.736023 GAGTCTATGAACTGTCAAATTTTGTTT 57.264 29.630 8.89 0.00 37.30 2.83
2771 3232 6.712095 TGCAGAGTCTATGAACTGTCAAATTT 59.288 34.615 0.00 0.00 37.30 1.82
2772 3233 6.233434 TGCAGAGTCTATGAACTGTCAAATT 58.767 36.000 0.00 0.00 37.30 1.82
2773 3234 5.798132 TGCAGAGTCTATGAACTGTCAAAT 58.202 37.500 0.00 0.00 37.30 2.32
2774 3235 5.011023 TCTGCAGAGTCTATGAACTGTCAAA 59.989 40.000 13.74 0.00 37.30 2.69
2775 3236 4.524328 TCTGCAGAGTCTATGAACTGTCAA 59.476 41.667 13.74 0.00 37.30 3.18
2776 3237 4.082125 TCTGCAGAGTCTATGAACTGTCA 58.918 43.478 13.74 0.00 38.41 3.58
2777 3238 4.710423 TCTGCAGAGTCTATGAACTGTC 57.290 45.455 13.74 0.00 33.57 3.51
2778 3239 5.474578 TTTCTGCAGAGTCTATGAACTGT 57.525 39.130 17.43 0.00 33.57 3.55
2779 3240 6.203530 TGTTTTTCTGCAGAGTCTATGAACTG 59.796 38.462 17.43 0.00 0.00 3.16
2780 3241 6.291377 TGTTTTTCTGCAGAGTCTATGAACT 58.709 36.000 17.43 0.00 0.00 3.01
2781 3242 6.545504 TGTTTTTCTGCAGAGTCTATGAAC 57.454 37.500 17.43 13.96 0.00 3.18
2782 3243 7.566760 TTTGTTTTTCTGCAGAGTCTATGAA 57.433 32.000 17.43 3.42 0.00 2.57
2783 3244 7.066887 TGTTTTGTTTTTCTGCAGAGTCTATGA 59.933 33.333 17.43 0.00 0.00 2.15
2784 3245 7.195646 TGTTTTGTTTTTCTGCAGAGTCTATG 58.804 34.615 17.43 0.00 0.00 2.23
2785 3246 7.333528 TGTTTTGTTTTTCTGCAGAGTCTAT 57.666 32.000 17.43 0.00 0.00 1.98
2786 3247 6.751514 TGTTTTGTTTTTCTGCAGAGTCTA 57.248 33.333 17.43 0.00 0.00 2.59
2787 3248 5.643379 TGTTTTGTTTTTCTGCAGAGTCT 57.357 34.783 17.43 0.00 0.00 3.24
2792 3253 9.985318 TTTTATTCATGTTTTGTTTTTCTGCAG 57.015 25.926 7.63 7.63 0.00 4.41
2819 3280 9.502091 AAGTTCAGTGTATAGCTAAATGTTCAA 57.498 29.630 0.00 0.00 0.00 2.69
2824 3285 9.155975 AGTGAAAGTTCAGTGTATAGCTAAATG 57.844 33.333 0.00 0.00 39.29 2.32
2858 3327 9.140286 CGGGATGATACAGTACATATTTAGTTG 57.860 37.037 0.00 0.00 0.00 3.16
2871 3437 8.431910 AACTTATTATACCGGGATGATACAGT 57.568 34.615 10.31 13.45 0.00 3.55
2877 3443 7.011994 TCTGGTAACTTATTATACCGGGATGA 58.988 38.462 10.31 0.00 45.01 2.92
2881 3447 5.476614 GCTCTGGTAACTTATTATACCGGG 58.523 45.833 6.32 0.00 45.01 5.73
2931 3501 7.949006 ACGGAGGGAGTATTATATAACTCAACT 59.051 37.037 13.93 11.42 43.21 3.16
2932 3502 8.120140 ACGGAGGGAGTATTATATAACTCAAC 57.880 38.462 13.93 8.00 43.21 3.18
2933 3503 8.716674 AACGGAGGGAGTATTATATAACTCAA 57.283 34.615 13.93 0.00 43.21 3.02
2935 3505 7.414984 CCGAACGGAGGGAGTATTATATAACTC 60.415 44.444 7.53 1.84 38.49 3.01
2936 3506 6.376581 CCGAACGGAGGGAGTATTATATAACT 59.623 42.308 7.53 0.00 37.50 2.24
2937 3507 6.375455 TCCGAACGGAGGGAGTATTATATAAC 59.625 42.308 12.04 0.00 39.76 1.89
2938 3508 6.484288 TCCGAACGGAGGGAGTATTATATAA 58.516 40.000 12.04 0.00 39.76 0.98
2939 3509 6.065976 TCCGAACGGAGGGAGTATTATATA 57.934 41.667 12.04 0.00 39.76 0.86
2942 3512 3.234234 TCCGAACGGAGGGAGTATTAT 57.766 47.619 12.04 0.00 39.76 1.28
2943 3513 2.734755 TCCGAACGGAGGGAGTATTA 57.265 50.000 12.04 0.00 39.76 0.98
2945 3515 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
2946 3516 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2947 3517 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2948 3518 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2949 3519 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2951 3521 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2952 3522 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2953 3523 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2954 3524 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2955 3525 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2956 3526 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
2958 3528 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
2959 3529 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
2960 3530 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
2961 3531 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
2962 3532 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
2963 3533 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
2966 3536 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
2967 3537 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
2969 3539 6.257849 GTCTAGATACATCCATTTTTGCGACA 59.742 38.462 0.00 0.00 0.00 4.35
2970 3540 6.292919 GGTCTAGATACATCCATTTTTGCGAC 60.293 42.308 0.00 0.00 0.00 5.19
2971 3541 5.758296 GGTCTAGATACATCCATTTTTGCGA 59.242 40.000 0.00 0.00 0.00 5.10
2972 3542 5.760253 AGGTCTAGATACATCCATTTTTGCG 59.240 40.000 0.00 0.00 0.00 4.85
2973 3543 7.095607 CGTAGGTCTAGATACATCCATTTTTGC 60.096 40.741 0.00 0.00 0.00 3.68
2974 3544 7.926555 ACGTAGGTCTAGATACATCCATTTTTG 59.073 37.037 0.00 0.00 0.00 2.44
2975 3545 8.019656 ACGTAGGTCTAGATACATCCATTTTT 57.980 34.615 0.00 0.00 0.00 1.94
2976 3546 7.598759 ACGTAGGTCTAGATACATCCATTTT 57.401 36.000 0.00 0.00 0.00 1.82
2977 3547 7.216973 GACGTAGGTCTAGATACATCCATTT 57.783 40.000 8.31 0.00 40.15 2.32
2978 3548 6.821031 GACGTAGGTCTAGATACATCCATT 57.179 41.667 8.31 0.00 40.15 3.16
2992 3562 6.821031 AATGGATGTATCTAGACGTAGGTC 57.179 41.667 7.49 7.49 43.76 3.85
2993 3563 7.598759 AAAATGGATGTATCTAGACGTAGGT 57.401 36.000 0.00 0.00 0.00 3.08
2994 3564 7.095607 GCAAAAATGGATGTATCTAGACGTAGG 60.096 40.741 0.00 0.00 0.00 3.18
2995 3565 7.358435 CGCAAAAATGGATGTATCTAGACGTAG 60.358 40.741 0.00 0.00 0.00 3.51
2996 3566 6.419710 CGCAAAAATGGATGTATCTAGACGTA 59.580 38.462 0.00 0.00 0.00 3.57
2997 3567 5.234329 CGCAAAAATGGATGTATCTAGACGT 59.766 40.000 0.00 0.00 0.00 4.34
2998 3568 5.462068 TCGCAAAAATGGATGTATCTAGACG 59.538 40.000 0.00 0.00 0.00 4.18
2999 3569 6.257849 TGTCGCAAAAATGGATGTATCTAGAC 59.742 38.462 0.00 0.00 0.00 2.59
3000 3570 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
3001 3571 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
3002 3572 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
3003 3573 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
3004 3574 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
3005 3575 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
3006 3576 5.703592 ACTACTTGTCGCAAAAATGGATGTA 59.296 36.000 0.00 0.00 0.00 2.29
3007 3577 4.518970 ACTACTTGTCGCAAAAATGGATGT 59.481 37.500 0.00 0.00 0.00 3.06
3008 3578 5.046910 ACTACTTGTCGCAAAAATGGATG 57.953 39.130 0.00 0.00 0.00 3.51
3009 3579 5.335661 GGAACTACTTGTCGCAAAAATGGAT 60.336 40.000 0.00 0.00 0.00 3.41
3010 3580 4.023536 GGAACTACTTGTCGCAAAAATGGA 60.024 41.667 0.00 0.00 0.00 3.41
3011 3581 4.226761 GGAACTACTTGTCGCAAAAATGG 58.773 43.478 0.00 0.00 0.00 3.16
3012 3582 3.906008 CGGAACTACTTGTCGCAAAAATG 59.094 43.478 0.00 0.00 0.00 2.32
3013 3583 3.810941 TCGGAACTACTTGTCGCAAAAAT 59.189 39.130 0.00 0.00 0.00 1.82
3014 3584 3.196463 TCGGAACTACTTGTCGCAAAAA 58.804 40.909 0.00 0.00 0.00 1.94
3015 3585 2.823984 TCGGAACTACTTGTCGCAAAA 58.176 42.857 0.00 0.00 0.00 2.44
3016 3586 2.512485 TCGGAACTACTTGTCGCAAA 57.488 45.000 0.00 0.00 0.00 3.68
3017 3587 2.129607 GTTCGGAACTACTTGTCGCAA 58.870 47.619 13.49 0.00 0.00 4.85
3018 3588 1.774639 GTTCGGAACTACTTGTCGCA 58.225 50.000 13.49 0.00 0.00 5.10
3019 3589 0.706729 CGTTCGGAACTACTTGTCGC 59.293 55.000 17.94 0.00 0.00 5.19
3020 3590 1.069022 TCCGTTCGGAACTACTTGTCG 60.069 52.381 17.94 3.10 0.00 4.35
3021 3591 2.593257 CTCCGTTCGGAACTACTTGTC 58.407 52.381 17.94 0.00 33.41 3.18
3022 3592 1.271656 CCTCCGTTCGGAACTACTTGT 59.728 52.381 17.94 0.00 33.41 3.16
3023 3593 1.403780 CCCTCCGTTCGGAACTACTTG 60.404 57.143 17.94 2.92 33.41 3.16
3024 3594 0.893447 CCCTCCGTTCGGAACTACTT 59.107 55.000 17.94 0.00 33.41 2.24
3025 3595 0.038744 TCCCTCCGTTCGGAACTACT 59.961 55.000 17.94 0.00 33.41 2.57
3026 3596 0.455005 CTCCCTCCGTTCGGAACTAC 59.545 60.000 17.94 0.00 33.41 2.73
3027 3597 0.038744 ACTCCCTCCGTTCGGAACTA 59.961 55.000 17.94 6.05 33.41 2.24
3028 3598 0.038744 TACTCCCTCCGTTCGGAACT 59.961 55.000 17.94 0.33 33.41 3.01
3029 3599 1.109609 ATACTCCCTCCGTTCGGAAC 58.890 55.000 14.79 10.83 33.41 3.62
3030 3600 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3031 3601 2.107031 TCATATACTCCCTCCGTTCGGA 59.893 50.000 13.34 13.34 0.00 4.55
3032 3602 2.511659 TCATATACTCCCTCCGTTCGG 58.488 52.381 4.74 4.74 0.00 4.30
3033 3603 4.022242 ACAATCATATACTCCCTCCGTTCG 60.022 45.833 0.00 0.00 0.00 3.95
3034 3604 5.470047 ACAATCATATACTCCCTCCGTTC 57.530 43.478 0.00 0.00 0.00 3.95
3035 3605 5.602978 AGAACAATCATATACTCCCTCCGTT 59.397 40.000 0.00 0.00 0.00 4.44
3036 3606 5.148502 AGAACAATCATATACTCCCTCCGT 58.851 41.667 0.00 0.00 0.00 4.69
3037 3607 5.478679 AGAGAACAATCATATACTCCCTCCG 59.521 44.000 0.00 0.00 0.00 4.63
3038 3608 6.926630 AGAGAACAATCATATACTCCCTCC 57.073 41.667 0.00 0.00 0.00 4.30
3058 3628 4.837093 TGGTGGTGGAAGGTAAATAGAG 57.163 45.455 0.00 0.00 0.00 2.43
3060 3630 5.074115 TGTTTGGTGGTGGAAGGTAAATAG 58.926 41.667 0.00 0.00 0.00 1.73
3061 3631 5.063017 TGTTTGGTGGTGGAAGGTAAATA 57.937 39.130 0.00 0.00 0.00 1.40
3071 3641 3.368323 GCTAAATCCATGTTTGGTGGTGG 60.368 47.826 0.00 0.00 44.06 4.61
3079 3649 5.490159 CCCACAAATGCTAAATCCATGTTT 58.510 37.500 0.00 0.00 0.00 2.83
3082 3652 3.118702 TGCCCACAAATGCTAAATCCATG 60.119 43.478 0.00 0.00 0.00 3.66
3085 3655 3.608316 TTGCCCACAAATGCTAAATCC 57.392 42.857 0.00 0.00 31.21 3.01
3086 3656 6.147864 TCTATTGCCCACAAATGCTAAATC 57.852 37.500 0.00 0.00 39.77 2.17
3087 3657 6.543430 TTCTATTGCCCACAAATGCTAAAT 57.457 33.333 0.00 0.00 39.77 1.40
3088 3658 5.991933 TTCTATTGCCCACAAATGCTAAA 57.008 34.783 0.00 0.00 39.77 1.85
3089 3659 5.337169 GGTTTCTATTGCCCACAAATGCTAA 60.337 40.000 0.00 0.00 39.77 3.09
3090 3660 4.159506 GGTTTCTATTGCCCACAAATGCTA 59.840 41.667 0.00 0.00 39.77 3.49
3091 3661 3.055891 GGTTTCTATTGCCCACAAATGCT 60.056 43.478 0.00 0.00 39.77 3.79
3092 3662 3.261580 GGTTTCTATTGCCCACAAATGC 58.738 45.455 0.00 0.00 39.77 3.56
3093 3663 4.021192 ACTGGTTTCTATTGCCCACAAATG 60.021 41.667 0.00 0.00 39.77 2.32
3095 3665 3.320541 CACTGGTTTCTATTGCCCACAAA 59.679 43.478 0.00 0.00 39.77 2.83
3101 3673 3.350219 TCCTCACTGGTTTCTATTGCC 57.650 47.619 0.00 0.00 37.07 4.52
3139 3711 1.980844 GAATGATGTTGTGCTGTTGCG 59.019 47.619 0.00 0.00 43.34 4.85
3147 3719 4.178540 GCAATCCCAAGAATGATGTTGTG 58.821 43.478 0.00 0.00 0.00 3.33
3179 3751 5.351465 GCTTGAATCCTCGTGAAGATACAAA 59.649 40.000 0.00 0.00 0.00 2.83
3185 3757 3.055891 TCATGCTTGAATCCTCGTGAAGA 60.056 43.478 0.00 0.00 0.00 2.87
3261 3833 3.119849 CCAAAGTCTGCGATTTTCGGATT 60.120 43.478 0.00 0.00 40.01 3.01
3338 3910 5.279809 GGAGGTATGAACTTACAGTGTTCCA 60.280 44.000 0.00 0.00 42.04 3.53
3363 3935 4.882427 TGAACGTTGGAAACTTTGGATACA 59.118 37.500 5.00 0.00 46.99 2.29
3364 3936 5.209977 GTGAACGTTGGAAACTTTGGATAC 58.790 41.667 5.00 0.00 46.99 2.24
3365 3937 4.024725 CGTGAACGTTGGAAACTTTGGATA 60.025 41.667 5.00 0.00 46.99 2.59
3366 3938 3.242936 CGTGAACGTTGGAAACTTTGGAT 60.243 43.478 5.00 0.00 46.99 3.41
3367 3939 2.096174 CGTGAACGTTGGAAACTTTGGA 59.904 45.455 5.00 0.00 46.99 3.53
3368 3940 2.096174 TCGTGAACGTTGGAAACTTTGG 59.904 45.455 5.00 0.00 46.99 3.28
3369 3941 3.392769 TCGTGAACGTTGGAAACTTTG 57.607 42.857 5.00 0.00 46.99 2.77
3370 3942 4.160594 GTTTCGTGAACGTTGGAAACTTT 58.839 39.130 26.11 0.00 46.99 2.66
3372 3944 2.096335 GGTTTCGTGAACGTTGGAAACT 59.904 45.455 28.95 2.04 46.99 2.66
3373 3945 2.096335 AGGTTTCGTGAACGTTGGAAAC 59.904 45.455 25.77 25.77 44.53 2.78
3374 3946 2.358015 AGGTTTCGTGAACGTTGGAAA 58.642 42.857 5.00 9.93 39.22 3.13
3375 3947 2.027003 AGGTTTCGTGAACGTTGGAA 57.973 45.000 5.00 3.59 39.22 3.53
3380 3952 1.862827 GCAGTAAGGTTTCGTGAACGT 59.137 47.619 2.37 0.00 39.22 3.99
3381 3953 2.132762 AGCAGTAAGGTTTCGTGAACG 58.867 47.619 0.00 0.00 39.22 3.95
3382 3954 3.128349 TGAGCAGTAAGGTTTCGTGAAC 58.872 45.455 0.00 0.00 37.53 3.18
3383 3955 3.462483 TGAGCAGTAAGGTTTCGTGAA 57.538 42.857 0.00 0.00 0.00 3.18
3384 3956 3.585862 GATGAGCAGTAAGGTTTCGTGA 58.414 45.455 0.00 0.00 0.00 4.35
3386 3958 2.567615 AGGATGAGCAGTAAGGTTTCGT 59.432 45.455 0.00 0.00 0.00 3.85
3387 3959 3.252974 AGGATGAGCAGTAAGGTTTCG 57.747 47.619 0.00 0.00 0.00 3.46
3388 3960 4.379918 GCAAAGGATGAGCAGTAAGGTTTC 60.380 45.833 0.00 0.00 0.00 2.78
3391 3985 2.040278 TGCAAAGGATGAGCAGTAAGGT 59.960 45.455 0.00 0.00 33.75 3.50
3504 4098 0.541063 TGCTGTTCCGTCTCCCAGTA 60.541 55.000 0.00 0.00 0.00 2.74
3508 4102 0.670854 GAACTGCTGTTCCGTCTCCC 60.671 60.000 22.07 0.00 44.93 4.30
3531 4125 3.443099 AGATTCACTTCATCGCGATCA 57.557 42.857 20.85 2.34 0.00 2.92
3573 4167 8.715191 ACAGATGCAACAAAAATCAAGTAAAA 57.285 26.923 0.00 0.00 0.00 1.52
3581 4175 5.978919 TCAGTGAACAGATGCAACAAAAATC 59.021 36.000 0.00 0.00 0.00 2.17
3589 4183 4.639755 TCAGTTTTCAGTGAACAGATGCAA 59.360 37.500 4.68 0.00 28.60 4.08
3599 4193 8.110860 AGTCTTTTCTTTTCAGTTTTCAGTGA 57.889 30.769 0.00 0.00 0.00 3.41
3607 4201 8.689972 ACATCAATGAGTCTTTTCTTTTCAGTT 58.310 29.630 0.00 0.00 0.00 3.16
3621 4215 9.849607 CATGTACGTAATTTACATCAATGAGTC 57.150 33.333 0.00 0.00 37.95 3.36
3622 4216 8.335356 GCATGTACGTAATTTACATCAATGAGT 58.665 33.333 0.00 0.00 37.95 3.41
3623 4217 7.798516 GGCATGTACGTAATTTACATCAATGAG 59.201 37.037 0.00 0.00 37.95 2.90
3625 4219 7.413644 TGGCATGTACGTAATTTACATCAATG 58.586 34.615 0.00 6.26 37.95 2.82
3626 4220 7.561021 TGGCATGTACGTAATTTACATCAAT 57.439 32.000 0.00 0.00 37.95 2.57
3628 4222 6.540551 ACATGGCATGTACGTAATTTACATCA 59.459 34.615 30.56 0.00 42.78 3.07
3629 4223 6.954944 ACATGGCATGTACGTAATTTACATC 58.045 36.000 30.56 0.00 42.78 3.06
3630 4224 6.935741 ACATGGCATGTACGTAATTTACAT 57.064 33.333 30.56 1.32 42.78 2.29
3632 4226 7.244898 TCAAACATGGCATGTACGTAATTTAC 58.755 34.615 31.58 0.00 44.07 2.01
3633 4227 7.379098 TCAAACATGGCATGTACGTAATTTA 57.621 32.000 31.58 11.26 44.07 1.40
3634 4228 6.260870 TCAAACATGGCATGTACGTAATTT 57.739 33.333 31.58 17.96 44.07 1.82
3635 4229 5.888691 TCAAACATGGCATGTACGTAATT 57.111 34.783 31.58 18.65 44.07 1.40
3636 4230 6.765989 AGTATCAAACATGGCATGTACGTAAT 59.234 34.615 31.58 21.12 44.07 1.89
3637 4231 6.036626 CAGTATCAAACATGGCATGTACGTAA 59.963 38.462 31.58 16.42 44.07 3.18
3638 4232 5.522097 CAGTATCAAACATGGCATGTACGTA 59.478 40.000 31.58 18.77 44.07 3.57
3640 4234 4.570369 TCAGTATCAAACATGGCATGTACG 59.430 41.667 31.58 24.15 44.07 3.67
3641 4235 5.586243 AGTCAGTATCAAACATGGCATGTAC 59.414 40.000 31.58 24.24 44.07 2.90
3644 4238 6.872628 ATAGTCAGTATCAAACATGGCATG 57.127 37.500 25.31 25.31 0.00 4.06
3645 4239 8.600668 AGATATAGTCAGTATCAAACATGGCAT 58.399 33.333 0.00 0.00 32.26 4.40
3647 4241 9.929180 TTAGATATAGTCAGTATCAAACATGGC 57.071 33.333 0.00 0.00 32.26 4.40
3654 4248 9.642343 ACACCTGTTAGATATAGTCAGTATCAA 57.358 33.333 0.00 0.00 32.26 2.57
3656 4250 8.516234 CCACACCTGTTAGATATAGTCAGTATC 58.484 40.741 0.00 0.00 0.00 2.24
3657 4251 8.225416 TCCACACCTGTTAGATATAGTCAGTAT 58.775 37.037 0.00 0.00 0.00 2.12
3660 4254 6.961360 TCCACACCTGTTAGATATAGTCAG 57.039 41.667 0.00 0.00 0.00 3.51
3662 4256 7.203910 CAGTTCCACACCTGTTAGATATAGTC 58.796 42.308 0.00 0.00 0.00 2.59
3663 4257 6.407074 GCAGTTCCACACCTGTTAGATATAGT 60.407 42.308 0.00 0.00 0.00 2.12
3664 4258 5.986135 GCAGTTCCACACCTGTTAGATATAG 59.014 44.000 0.00 0.00 0.00 1.31
3665 4259 5.661312 AGCAGTTCCACACCTGTTAGATATA 59.339 40.000 0.00 0.00 0.00 0.86
3667 4261 3.838317 AGCAGTTCCACACCTGTTAGATA 59.162 43.478 0.00 0.00 0.00 1.98
3694 4368 2.509052 TCTGCGATATCGTCCCTTTG 57.491 50.000 24.99 8.79 42.22 2.77
3704 4378 4.024472 CGATCGGTCTATCATCTGCGATAT 60.024 45.833 7.38 0.00 0.00 1.63
3800 4474 4.081420 GGATGATATGTAAGGCCTGTCGAT 60.081 45.833 5.69 0.00 0.00 3.59
3801 4475 3.258372 GGATGATATGTAAGGCCTGTCGA 59.742 47.826 5.69 0.00 0.00 4.20
4025 4702 1.697432 CCACAGTCAACTCACCCCTTA 59.303 52.381 0.00 0.00 0.00 2.69
4029 4706 1.947456 GAAACCACAGTCAACTCACCC 59.053 52.381 0.00 0.00 0.00 4.61
4039 4716 0.687354 ATCCTCGCTGAAACCACAGT 59.313 50.000 0.00 0.00 39.73 3.55
4099 4776 1.278238 GTAGACATCGAAGCAACCCG 58.722 55.000 0.00 0.00 0.00 5.28
4122 4799 7.792032 TCTAACAAGATAATGGGGTAACTGAG 58.208 38.462 0.00 0.00 0.00 3.35
4194 4871 1.092348 GTGGTCCAGGCGATTTTACC 58.908 55.000 0.00 0.00 0.00 2.85
4210 4887 2.874701 CAAATGGCGGATAGAGAAGTGG 59.125 50.000 0.00 0.00 0.00 4.00
4324 5020 5.181245 GTGTGCATCTTAACTATGTTGTGGT 59.819 40.000 0.00 0.00 0.00 4.16
4329 5025 4.326278 CGTCGTGTGCATCTTAACTATGTT 59.674 41.667 0.00 0.00 0.00 2.71
4365 5061 9.666626 TTATGTTGGTTTTATTTTAGTGTCGTG 57.333 29.630 0.00 0.00 0.00 4.35
4366 5062 9.667989 GTTATGTTGGTTTTATTTTAGTGTCGT 57.332 29.630 0.00 0.00 0.00 4.34
4401 5102 9.722056 GTATAATGTCAGTCTTTTATGGCTTTG 57.278 33.333 0.00 0.00 0.00 2.77
4426 5127 3.969976 TCTCTAGCATCTTTGGCATAGGT 59.030 43.478 5.10 0.00 0.00 3.08
4444 5147 0.964358 CGGGTTGGTCTACCGTCTCT 60.964 60.000 0.00 0.00 42.53 3.10
4469 5172 2.225192 ACCCAATATGGATGGAGGCATG 60.225 50.000 0.00 0.00 40.96 4.06
4504 5207 3.637273 GCGGTTGGAGAGGGTGGT 61.637 66.667 0.00 0.00 0.00 4.16
4555 5267 8.544622 TCATATGTGGTCAATTCTACACCTTAA 58.455 33.333 1.90 0.00 32.13 1.85
4569 5293 4.040339 ACACACTCACTTCATATGTGGTCA 59.960 41.667 1.90 0.00 43.94 4.02
4590 5316 3.057386 TGCAGGTTATTCTTCGACGTACA 60.057 43.478 0.00 0.00 0.00 2.90
4595 5321 4.000988 TCCTTTGCAGGTTATTCTTCGAC 58.999 43.478 0.00 0.00 41.69 4.20
4601 5327 7.631717 AACTATTCTCCTTTGCAGGTTATTC 57.368 36.000 0.00 0.00 41.69 1.75
4640 5366 7.811236 CGATTTGGCTATGCAGAAATGATTATT 59.189 33.333 0.00 0.00 0.00 1.40
4642 5368 6.486320 TCGATTTGGCTATGCAGAAATGATTA 59.514 34.615 0.00 0.00 0.00 1.75
4678 5404 2.877154 ATGAGGGTGGGAGAGTATGT 57.123 50.000 0.00 0.00 0.00 2.29
4695 5421 9.657419 AATCCCAAAGATGTTTAAAAGCTAATG 57.343 29.630 0.00 0.00 34.56 1.90
4718 5445 3.889815 TGGTCATTGACTGGATGGAATC 58.110 45.455 16.02 0.00 36.20 2.52
4730 5458 3.130164 CCGCCAACATTTATGGTCATTGA 59.870 43.478 0.00 0.00 40.23 2.57
4751 5479 3.950397 TCATATCCACCAACAAGTGTCC 58.050 45.455 0.00 0.00 35.93 4.02
4761 5489 4.860802 AGTGTCCAATTCATATCCACCA 57.139 40.909 0.00 0.00 0.00 4.17
4770 5498 7.770433 CCAGTCATCTAAATAGTGTCCAATTCA 59.230 37.037 0.00 0.00 0.00 2.57
4787 5542 4.456911 CGCATTTTATATGGCCAGTCATCT 59.543 41.667 13.05 0.00 0.00 2.90
4796 5551 2.156117 TCGTACGCGCATTTTATATGGC 59.844 45.455 11.24 0.00 38.14 4.40
4804 5559 2.953640 TCTTTTTCGTACGCGCATTT 57.046 40.000 11.24 0.00 38.14 2.32
4812 5567 4.806342 TCAAGCACCTTCTTTTTCGTAC 57.194 40.909 0.00 0.00 0.00 3.67
4822 5584 3.003275 TGACGAAACAATCAAGCACCTTC 59.997 43.478 0.00 0.00 0.00 3.46
4823 5585 2.948979 TGACGAAACAATCAAGCACCTT 59.051 40.909 0.00 0.00 0.00 3.50
4857 5622 8.946085 CAATATGCAAGGAAGTAAGAAGTGTAA 58.054 33.333 0.00 0.00 0.00 2.41
4879 5644 6.449635 AATAAAATCTTGCTCGCCACAATA 57.550 33.333 0.00 0.00 0.00 1.90
4884 5649 3.509575 ACCAAATAAAATCTTGCTCGCCA 59.490 39.130 0.00 0.00 0.00 5.69
4978 5744 8.615878 TGAGATTTCGGTGGGTAATAATAATG 57.384 34.615 0.00 0.00 0.00 1.90
4979 5745 9.635404 TTTGAGATTTCGGTGGGTAATAATAAT 57.365 29.630 0.00 0.00 0.00 1.28
4989 5755 1.200020 GCACTTTGAGATTTCGGTGGG 59.800 52.381 0.00 0.00 0.00 4.61
5043 5809 2.771943 GGAATCTCACCACATCTGGGTA 59.228 50.000 0.00 0.00 42.74 3.69
5078 5844 1.533625 CCCTCGCTTTTTGTCATGGA 58.466 50.000 0.00 0.00 0.00 3.41
5085 5851 0.318955 CAGTTGGCCCTCGCTTTTTG 60.319 55.000 0.00 0.00 34.44 2.44
5090 5856 2.543067 GAATCCAGTTGGCCCTCGCT 62.543 60.000 0.00 0.00 34.44 4.93
5098 5864 3.118408 TCCTTCATACGGAATCCAGTTGG 60.118 47.826 0.00 0.00 34.32 3.77
5103 5869 7.513856 TGAATATTTCCTTCATACGGAATCCA 58.486 34.615 0.00 0.00 40.05 3.41
5104 5870 7.878127 TCTGAATATTTCCTTCATACGGAATCC 59.122 37.037 0.00 0.00 40.05 3.01
5108 5874 6.239600 CCCTCTGAATATTTCCTTCATACGGA 60.240 42.308 0.00 0.00 32.50 4.69
5127 5893 1.374758 GTGCAACTCGTCCCCTCTG 60.375 63.158 0.00 0.00 0.00 3.35
5130 5896 1.768684 ATGTGTGCAACTCGTCCCCT 61.769 55.000 0.00 0.00 38.04 4.79
5143 5909 2.998670 CCAGTACTCTTGCAGATGTGTG 59.001 50.000 0.00 0.00 0.00 3.82
5144 5910 2.613977 GCCAGTACTCTTGCAGATGTGT 60.614 50.000 0.00 0.00 33.31 3.72
5148 5914 1.577736 AGGCCAGTACTCTTGCAGAT 58.422 50.000 5.01 0.00 34.54 2.90
5150 5916 1.271054 ACAAGGCCAGTACTCTTGCAG 60.271 52.381 18.09 7.59 40.90 4.41
5151 5917 0.764890 ACAAGGCCAGTACTCTTGCA 59.235 50.000 18.09 0.00 40.90 4.08
5153 5919 1.714794 CGACAAGGCCAGTACTCTTG 58.285 55.000 17.06 17.06 42.37 3.02
5156 5922 1.805945 CGCGACAAGGCCAGTACTC 60.806 63.158 5.01 0.00 0.00 2.59
5157 5923 1.812686 TTCGCGACAAGGCCAGTACT 61.813 55.000 9.15 0.00 0.00 2.73
5158 5924 1.373748 TTCGCGACAAGGCCAGTAC 60.374 57.895 9.15 0.00 0.00 2.73
5159 5925 1.373748 GTTCGCGACAAGGCCAGTA 60.374 57.895 9.15 0.00 0.00 2.74
5160 5926 2.665185 GTTCGCGACAAGGCCAGT 60.665 61.111 9.15 2.07 0.00 4.00
5161 5927 2.250939 TTGTTCGCGACAAGGCCAG 61.251 57.895 9.15 0.00 43.13 4.85
5217 5984 5.617252 TGGTAGCATAATTGGCTAGGTAAC 58.383 41.667 12.34 5.08 43.96 2.50
5229 5996 7.552687 TCAAAGATTCGTTTCTGGTAGCATAAT 59.447 33.333 0.00 0.00 0.00 1.28
5232 5999 5.245531 TCAAAGATTCGTTTCTGGTAGCAT 58.754 37.500 0.00 0.00 0.00 3.79
5239 6006 2.480419 ACGGCTCAAAGATTCGTTTCTG 59.520 45.455 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.