Multiple sequence alignment - TraesCS2B01G241300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G241300 chr2B 100.000 4106 0 0 1 4106 245296790 245300895 0.000000e+00 7583.0
1 TraesCS2B01G241300 chr2B 79.707 1365 187 56 1158 2469 245129126 245130453 0.000000e+00 904.0
2 TraesCS2B01G241300 chr2B 95.652 115 5 0 3290 3404 494265409 494265523 7.010000e-43 185.0
3 TraesCS2B01G241300 chr2B 95.575 113 4 1 3297 3409 25366092 25365981 3.260000e-41 180.0
4 TraesCS2B01G241300 chr2B 88.194 144 12 5 3294 3434 620631597 620631456 2.540000e-37 167.0
5 TraesCS2B01G241300 chr2D 92.642 2949 172 23 1 2946 189283881 189286787 0.000000e+00 4202.0
6 TraesCS2B01G241300 chr2D 83.385 644 105 2 3463 4106 551154850 551154209 2.730000e-166 595.0
7 TraesCS2B01G241300 chr2D 89.761 293 14 7 3020 3299 189286784 189287073 1.090000e-95 361.0
8 TraesCS2B01G241300 chr2D 97.727 44 1 0 3414 3457 189287075 189287118 4.400000e-10 76.8
9 TraesCS2B01G241300 chr2A 93.596 2108 93 19 764 2865 203226585 203228656 0.000000e+00 3107.0
10 TraesCS2B01G241300 chr2A 86.973 261 6 7 3037 3269 203228701 203228961 6.770000e-68 268.0
11 TraesCS2B01G241300 chr2A 97.727 44 1 0 3414 3457 203228975 203229018 4.400000e-10 76.8
12 TraesCS2B01G241300 chr7B 78.034 1516 251 52 994 2461 520416382 520417863 0.000000e+00 880.0
13 TraesCS2B01G241300 chr7B 84.177 632 97 3 3463 4093 580662440 580663069 9.760000e-171 610.0
14 TraesCS2B01G241300 chr7B 80.000 215 42 1 2595 2808 520417617 520417831 1.530000e-34 158.0
15 TraesCS2B01G241300 chr1B 84.578 616 91 3 3491 4105 4789355 4788743 3.510000e-170 608.0
16 TraesCS2B01G241300 chr1B 82.251 231 35 6 2604 2831 670160203 670160430 1.160000e-45 195.0
17 TraesCS2B01G241300 chr1B 93.388 121 8 0 3294 3414 669891463 669891583 3.260000e-41 180.0
18 TraesCS2B01G241300 chr1B 81.250 224 38 4 2610 2831 670149475 670149696 1.170000e-40 178.0
19 TraesCS2B01G241300 chr1D 83.589 652 101 5 3456 4106 120019642 120020288 1.260000e-169 606.0
20 TraesCS2B01G241300 chr1D 82.251 231 35 6 2604 2831 481452600 481452373 1.160000e-45 195.0
21 TraesCS2B01G241300 chr1D 81.818 209 36 2 2624 2831 481500524 481500317 1.520000e-39 174.0
22 TraesCS2B01G241300 chr1D 95.000 40 2 0 497 536 480627527 480627566 3.430000e-06 63.9
23 TraesCS2B01G241300 chr7D 83.180 654 105 5 3456 4106 621300068 621300719 9.830000e-166 593.0
24 TraesCS2B01G241300 chr7D 83.101 645 107 2 3463 4106 561665162 561664519 1.640000e-163 586.0
25 TraesCS2B01G241300 chr7D 92.000 125 9 1 3287 3411 568753483 568753360 1.520000e-39 174.0
26 TraesCS2B01G241300 chr4B 82.879 660 102 9 3451 4105 635025247 635025900 2.130000e-162 582.0
27 TraesCS2B01G241300 chr5D 82.801 657 106 6 3455 4106 300170953 300171607 7.650000e-162 580.0
28 TraesCS2B01G241300 chr6D 82.727 660 101 9 3455 4106 289498612 289499266 3.560000e-160 575.0
29 TraesCS2B01G241300 chr5A 81.301 246 42 4 2598 2841 546263467 546263710 3.240000e-46 196.0
30 TraesCS2B01G241300 chr5B 95.614 114 4 1 3298 3410 558558696 558558583 9.070000e-42 182.0
31 TraesCS2B01G241300 chr5B 92.683 123 6 2 3288 3408 531200081 531199960 1.520000e-39 174.0
32 TraesCS2B01G241300 chr3A 94.118 119 7 0 3294 3412 583676701 583676583 9.070000e-42 182.0
33 TraesCS2B01G241300 chr6A 93.333 120 8 0 3286 3405 596351409 596351528 1.170000e-40 178.0
34 TraesCS2B01G241300 chr1A 79.018 224 43 4 2610 2831 578207172 578206951 2.560000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G241300 chr2B 245296790 245300895 4105 False 7583.0 7583 100.000000 1 4106 1 chr2B.!!$F2 4105
1 TraesCS2B01G241300 chr2B 245129126 245130453 1327 False 904.0 904 79.707000 1158 2469 1 chr2B.!!$F1 1311
2 TraesCS2B01G241300 chr2D 189283881 189287118 3237 False 1546.6 4202 93.376667 1 3457 3 chr2D.!!$F1 3456
3 TraesCS2B01G241300 chr2D 551154209 551154850 641 True 595.0 595 83.385000 3463 4106 1 chr2D.!!$R1 643
4 TraesCS2B01G241300 chr2A 203226585 203229018 2433 False 1150.6 3107 92.765333 764 3457 3 chr2A.!!$F1 2693
5 TraesCS2B01G241300 chr7B 580662440 580663069 629 False 610.0 610 84.177000 3463 4093 1 chr7B.!!$F1 630
6 TraesCS2B01G241300 chr7B 520416382 520417863 1481 False 519.0 880 79.017000 994 2808 2 chr7B.!!$F2 1814
7 TraesCS2B01G241300 chr1B 4788743 4789355 612 True 608.0 608 84.578000 3491 4105 1 chr1B.!!$R1 614
8 TraesCS2B01G241300 chr1D 120019642 120020288 646 False 606.0 606 83.589000 3456 4106 1 chr1D.!!$F1 650
9 TraesCS2B01G241300 chr7D 621300068 621300719 651 False 593.0 593 83.180000 3456 4106 1 chr7D.!!$F1 650
10 TraesCS2B01G241300 chr7D 561664519 561665162 643 True 586.0 586 83.101000 3463 4106 1 chr7D.!!$R1 643
11 TraesCS2B01G241300 chr4B 635025247 635025900 653 False 582.0 582 82.879000 3451 4105 1 chr4B.!!$F1 654
12 TraesCS2B01G241300 chr5D 300170953 300171607 654 False 580.0 580 82.801000 3455 4106 1 chr5D.!!$F1 651
13 TraesCS2B01G241300 chr6D 289498612 289499266 654 False 575.0 575 82.727000 3455 4106 1 chr6D.!!$F1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.036875 CGGGAGGAGGCAAGACTTTT 59.963 55.0 0.0 0.0 0.0 2.27 F
923 926 0.263172 ACGATCCTCCATCCTGACCT 59.737 55.0 0.0 0.0 0.0 3.85 F
1176 1198 0.323999 TTACAGAGGCAGGCGAGGTA 60.324 55.0 0.0 0.0 0.0 3.08 F
2556 2623 0.179004 TGGGCACTCGATGGTTTGTT 60.179 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1171 0.179000 CCTCGCCTGCCTCTGTAAAT 59.821 55.0 0.0 0.0 0.00 1.40 R
2547 2614 0.030101 CGTCACCGCAAACAAACCAT 59.970 50.0 0.0 0.0 0.00 3.55 R
2821 2888 0.179020 TGAACTCACTTGGTGCCTGG 60.179 55.0 0.0 0.0 32.98 4.45 R
3887 4010 0.109723 GTTGGCTGGTGGTACTTGGA 59.890 55.0 0.0 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.537188 TCTCTGCGATCAAGAACCCC 59.463 55.000 0.00 0.00 0.00 4.95
49 50 2.619849 CCAGATGATGCAACACCTCCTT 60.620 50.000 0.00 0.00 0.00 3.36
53 54 0.955428 GATGCAACACCTCCTTGCGA 60.955 55.000 0.00 0.00 45.92 5.10
55 56 1.598130 GCAACACCTCCTTGCGAGT 60.598 57.895 0.00 0.00 36.82 4.18
68 69 1.188219 TGCGAGTTGCTCCTTCTCCT 61.188 55.000 3.50 0.00 46.63 3.69
133 134 0.188587 TGATCCCTAGCCAGGACGAT 59.811 55.000 0.00 0.00 45.91 3.73
144 145 3.389329 AGCCAGGACGATGAGTTCATTAT 59.611 43.478 0.00 0.00 36.57 1.28
165 166 1.153349 GGTTGTCCTCGGCCATCTC 60.153 63.158 2.24 0.00 0.00 2.75
166 167 1.153349 GTTGTCCTCGGCCATCTCC 60.153 63.158 2.24 0.00 0.00 3.71
167 168 1.612146 TTGTCCTCGGCCATCTCCA 60.612 57.895 2.24 0.00 0.00 3.86
169 170 2.764128 TCCTCGGCCATCTCCACC 60.764 66.667 2.24 0.00 0.00 4.61
170 171 3.083349 CCTCGGCCATCTCCACCA 61.083 66.667 2.24 0.00 0.00 4.17
171 172 2.187946 CTCGGCCATCTCCACCAC 59.812 66.667 2.24 0.00 0.00 4.16
172 173 3.723235 CTCGGCCATCTCCACCACG 62.723 68.421 2.24 0.00 0.00 4.94
174 175 4.408821 GGCCATCTCCACCACGCA 62.409 66.667 0.00 0.00 0.00 5.24
175 176 2.821366 GCCATCTCCACCACGCAG 60.821 66.667 0.00 0.00 0.00 5.18
176 177 2.821366 CCATCTCCACCACGCAGC 60.821 66.667 0.00 0.00 0.00 5.25
177 178 2.046988 CATCTCCACCACGCAGCA 60.047 61.111 0.00 0.00 0.00 4.41
211 212 1.239968 GGATCGCCTCCATTGCCATC 61.240 60.000 0.00 0.00 44.26 3.51
212 213 1.228367 ATCGCCTCCATTGCCATCC 60.228 57.895 0.00 0.00 0.00 3.51
213 214 1.713005 ATCGCCTCCATTGCCATCCT 61.713 55.000 0.00 0.00 0.00 3.24
214 215 1.895707 CGCCTCCATTGCCATCCTC 60.896 63.158 0.00 0.00 0.00 3.71
215 216 1.228228 GCCTCCATTGCCATCCTCA 59.772 57.895 0.00 0.00 0.00 3.86
216 217 0.178970 GCCTCCATTGCCATCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
217 218 1.617322 CCTCCATTGCCATCCTCATG 58.383 55.000 0.00 0.00 0.00 3.07
218 219 1.144298 CCTCCATTGCCATCCTCATGA 59.856 52.381 0.00 0.00 30.57 3.07
219 220 2.228059 CTCCATTGCCATCCTCATGAC 58.772 52.381 0.00 0.00 30.57 3.06
220 221 1.565288 TCCATTGCCATCCTCATGACA 59.435 47.619 0.00 0.00 30.57 3.58
221 222 2.176148 TCCATTGCCATCCTCATGACAT 59.824 45.455 0.00 0.00 30.57 3.06
225 226 2.126057 TGCCATCCTCATGACATGGTA 58.874 47.619 22.16 17.88 39.55 3.25
231 232 3.877559 TCCTCATGACATGGTAGCTTTG 58.122 45.455 15.37 0.00 0.00 2.77
256 257 1.495951 CCGTAACGGCTGCACTTTC 59.504 57.895 0.50 0.00 41.17 2.62
263 264 4.090057 GCTGCACTTTCCGACGGC 62.090 66.667 9.66 0.00 0.00 5.68
293 294 0.460284 CTGTGAGCCGAGCCGTAAAT 60.460 55.000 0.00 0.00 0.00 1.40
295 296 1.813753 TGAGCCGAGCCGTAAATGC 60.814 57.895 0.00 0.00 0.00 3.56
296 297 2.513897 AGCCGAGCCGTAAATGCC 60.514 61.111 0.00 0.00 0.00 4.40
297 298 2.822255 GCCGAGCCGTAAATGCCA 60.822 61.111 0.00 0.00 0.00 4.92
298 299 3.098555 CCGAGCCGTAAATGCCAC 58.901 61.111 0.00 0.00 0.00 5.01
322 323 0.036875 CGGGAGGAGGCAAGACTTTT 59.963 55.000 0.00 0.00 0.00 2.27
331 332 2.010817 CAAGACTTTTGGCACGCGC 61.011 57.895 5.73 0.00 37.44 6.86
353 354 2.214216 TGCCACGGGACTAGCACTT 61.214 57.895 0.00 0.00 0.00 3.16
354 355 1.741770 GCCACGGGACTAGCACTTG 60.742 63.158 0.00 0.00 0.00 3.16
361 362 1.405661 GGGACTAGCACTTGTACTGCC 60.406 57.143 2.20 0.00 35.01 4.85
373 374 3.000684 TGTACTGCCAGAGACGTAGAT 57.999 47.619 0.00 0.00 0.00 1.98
382 383 2.959707 CAGAGACGTAGATTAGGGCCTT 59.040 50.000 13.45 0.00 0.00 4.35
409 410 2.646175 GCGCACTGACACCTCCCTA 61.646 63.158 0.30 0.00 0.00 3.53
412 413 0.905357 GCACTGACACCTCCCTATGT 59.095 55.000 0.00 0.00 0.00 2.29
414 415 2.179427 CACTGACACCTCCCTATGTGA 58.821 52.381 0.00 0.00 36.35 3.58
417 418 1.183549 GACACCTCCCTATGTGACGT 58.816 55.000 0.00 0.00 36.35 4.34
424 425 1.219124 CCTATGTGACGTGGCTGCT 59.781 57.895 0.00 0.00 0.00 4.24
428 429 3.406361 GTGACGTGGCTGCTGACG 61.406 66.667 18.59 18.59 41.41 4.35
466 468 1.255667 ATGCTCGACACCCCGTAAGT 61.256 55.000 0.00 0.00 0.00 2.24
468 470 1.012486 GCTCGACACCCCGTAAGTTG 61.012 60.000 0.00 0.00 0.00 3.16
517 519 7.997223 CCATCCTACCTATCAATGCAATGATAT 59.003 37.037 21.75 12.53 40.51 1.63
518 520 8.837389 CATCCTACCTATCAATGCAATGATATG 58.163 37.037 21.75 20.57 40.51 1.78
587 589 1.600023 ATAAGTCGCGAGAGAGGAGG 58.400 55.000 10.24 0.00 43.49 4.30
595 597 0.393267 CGAGAGAGGAGGAGACGGTT 60.393 60.000 0.00 0.00 0.00 4.44
598 600 1.099689 GAGAGGAGGAGACGGTTCAG 58.900 60.000 0.00 0.00 0.00 3.02
599 601 0.968393 AGAGGAGGAGACGGTTCAGC 60.968 60.000 0.00 0.00 0.00 4.26
650 652 4.867599 GGCGTCGGGAGGCTAACG 62.868 72.222 12.44 4.14 41.51 3.18
685 687 2.151202 TCCCAACAAGCAATTCGACTC 58.849 47.619 0.00 0.00 0.00 3.36
713 715 6.546034 CCAAAATTGGGGTTAGTCGATTAGAT 59.454 38.462 4.18 0.00 44.70 1.98
714 716 7.417612 CAAAATTGGGGTTAGTCGATTAGATG 58.582 38.462 0.00 0.00 0.00 2.90
718 720 4.202223 TGGGGTTAGTCGATTAGATGAAGC 60.202 45.833 0.00 0.00 0.00 3.86
720 722 4.308265 GGTTAGTCGATTAGATGAAGCCC 58.692 47.826 0.00 0.00 0.00 5.19
728 730 4.681781 CGATTAGATGAAGCCCAACAGAGT 60.682 45.833 0.00 0.00 0.00 3.24
752 754 2.364002 ACAACCGAACCAAAAGAATGGG 59.636 45.455 0.00 0.00 45.18 4.00
773 775 3.400255 GCATGAATCTCAGAGCAGCATA 58.600 45.455 0.00 0.00 33.34 3.14
774 776 3.186817 GCATGAATCTCAGAGCAGCATAC 59.813 47.826 0.00 0.00 33.34 2.39
775 777 4.633175 CATGAATCTCAGAGCAGCATACT 58.367 43.478 0.00 0.00 0.00 2.12
797 799 9.927668 ATACTGACTGACCCAAATTTAAAATTG 57.072 29.630 8.74 8.74 0.00 2.32
807 809 5.872070 CCAAATTTAAAATTGAGGCGGCTTA 59.128 36.000 14.76 6.01 0.00 3.09
821 824 3.760684 GGCGGCTTAGGTATAGCTAAGTA 59.239 47.826 35.08 14.71 38.67 2.24
860 863 2.039879 CCCCTACTAGCGGCCATTTAAT 59.960 50.000 2.24 0.00 0.00 1.40
864 867 3.577805 ACTAGCGGCCATTTAATCCTT 57.422 42.857 2.24 0.00 0.00 3.36
890 893 0.618458 GGAGCCAATGTGAGGGTGTA 59.382 55.000 0.00 0.00 36.91 2.90
923 926 0.263172 ACGATCCTCCATCCTGACCT 59.737 55.000 0.00 0.00 0.00 3.85
948 951 0.794473 GCCGCCGGCTATAAATACAC 59.206 55.000 26.68 0.00 46.69 2.90
955 958 3.256631 CCGGCTATAAATACACGTACCCT 59.743 47.826 0.00 0.00 0.00 4.34
990 993 3.128764 CGGCTATCCTCTGATACGCAATA 59.871 47.826 0.00 0.00 33.20 1.90
991 994 4.677584 GGCTATCCTCTGATACGCAATAG 58.322 47.826 0.00 0.00 33.20 1.73
1176 1198 0.323999 TTACAGAGGCAGGCGAGGTA 60.324 55.000 0.00 0.00 0.00 3.08
1517 1539 1.064463 GGCCATGAAGAATGTCCAGGA 60.064 52.381 0.00 0.00 34.24 3.86
1589 1611 2.628657 GCTCGATGCGCTTAAGCC 59.371 61.111 21.53 14.34 37.91 4.35
1590 1612 2.173669 GCTCGATGCGCTTAAGCCA 61.174 57.895 21.53 19.16 37.91 4.75
1591 1613 1.502163 GCTCGATGCGCTTAAGCCAT 61.502 55.000 23.24 23.24 37.91 4.40
1592 1614 0.510359 CTCGATGCGCTTAAGCCATC 59.490 55.000 29.89 29.89 41.26 3.51
1830 1852 1.350351 AGCCTATATGAAGCCCAGCTG 59.650 52.381 6.78 6.78 39.62 4.24
1834 1856 1.216064 ATATGAAGCCCAGCTGGACA 58.784 50.000 34.91 25.02 39.62 4.02
1889 1911 1.556911 CAGCTCCAGGAACCACACTAT 59.443 52.381 0.00 0.00 0.00 2.12
1897 1919 3.624861 CAGGAACCACACTATGAAGATGC 59.375 47.826 0.00 0.00 0.00 3.91
1958 1986 1.302192 CAAAAGGCGGGGAGTCGAA 60.302 57.895 0.00 0.00 0.00 3.71
2133 2182 1.209383 CGAGAACGAGAAGCCGACA 59.791 57.895 0.00 0.00 42.66 4.35
2384 2451 1.471684 CGCCTTCAACGACTACTACCT 59.528 52.381 0.00 0.00 0.00 3.08
2496 2563 6.293735 CGCTCCTTCTCCTAGTAGTCAATTAG 60.294 46.154 0.00 0.00 0.00 1.73
2524 2591 3.181466 TGTCCGTCCAATACCTGATGATG 60.181 47.826 0.00 0.00 0.00 3.07
2525 2592 3.069586 GTCCGTCCAATACCTGATGATGA 59.930 47.826 0.00 0.00 0.00 2.92
2526 2593 3.903714 TCCGTCCAATACCTGATGATGAT 59.096 43.478 0.00 0.00 0.00 2.45
2555 2622 0.606401 CTGGGCACTCGATGGTTTGT 60.606 55.000 0.00 0.00 0.00 2.83
2556 2623 0.179004 TGGGCACTCGATGGTTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
2560 2627 1.673760 CACTCGATGGTTTGTTTGCG 58.326 50.000 0.00 0.00 0.00 4.85
2561 2628 0.591170 ACTCGATGGTTTGTTTGCGG 59.409 50.000 0.00 0.00 0.00 5.69
2562 2629 0.591170 CTCGATGGTTTGTTTGCGGT 59.409 50.000 0.00 0.00 0.00 5.68
2563 2630 0.309302 TCGATGGTTTGTTTGCGGTG 59.691 50.000 0.00 0.00 0.00 4.94
2564 2631 0.309302 CGATGGTTTGTTTGCGGTGA 59.691 50.000 0.00 0.00 0.00 4.02
2773 2840 0.961019 ACTACTACCAACGCAACGGA 59.039 50.000 0.00 0.00 0.00 4.69
2821 2888 3.723348 GCCGGCTCCGTTGTTCAC 61.723 66.667 22.15 0.00 37.81 3.18
2886 2970 7.464358 ACTAACATGACGTTTCTGCAAATATC 58.536 34.615 0.00 0.00 39.14 1.63
2921 3005 4.095782 TCTTCGCATGGGCTGTTATTTAAC 59.904 41.667 4.59 0.00 38.10 2.01
2923 3007 3.376859 TCGCATGGGCTGTTATTTAACTG 59.623 43.478 4.59 3.12 37.12 3.16
2945 3029 5.789521 TGATTCTCGTATTTGGACTGAACA 58.210 37.500 0.00 0.00 0.00 3.18
2946 3030 6.406370 TGATTCTCGTATTTGGACTGAACAT 58.594 36.000 0.00 0.00 0.00 2.71
2947 3031 6.878923 TGATTCTCGTATTTGGACTGAACATT 59.121 34.615 0.00 0.00 0.00 2.71
2948 3032 8.038351 TGATTCTCGTATTTGGACTGAACATTA 58.962 33.333 0.00 0.00 0.00 1.90
2949 3033 8.786826 ATTCTCGTATTTGGACTGAACATTAA 57.213 30.769 0.00 0.00 0.00 1.40
2950 3034 7.591006 TCTCGTATTTGGACTGAACATTAAC 57.409 36.000 0.00 0.00 0.00 2.01
2951 3035 7.156000 TCTCGTATTTGGACTGAACATTAACA 58.844 34.615 0.00 0.00 0.00 2.41
2952 3036 7.658167 TCTCGTATTTGGACTGAACATTAACAA 59.342 33.333 0.00 0.00 0.00 2.83
2953 3037 8.155821 TCGTATTTGGACTGAACATTAACAAA 57.844 30.769 0.00 0.00 0.00 2.83
2954 3038 8.071368 TCGTATTTGGACTGAACATTAACAAAC 58.929 33.333 0.00 0.00 0.00 2.93
2955 3039 7.858382 CGTATTTGGACTGAACATTAACAAACA 59.142 33.333 0.00 0.00 0.00 2.83
2956 3040 9.522804 GTATTTGGACTGAACATTAACAAACAA 57.477 29.630 0.00 0.00 0.00 2.83
2958 3042 7.820044 TTGGACTGAACATTAACAAACAAAC 57.180 32.000 0.00 0.00 0.00 2.93
2959 3043 6.925211 TGGACTGAACATTAACAAACAAACA 58.075 32.000 0.00 0.00 0.00 2.83
2960 3044 7.551585 TGGACTGAACATTAACAAACAAACAT 58.448 30.769 0.00 0.00 0.00 2.71
2961 3045 7.704472 TGGACTGAACATTAACAAACAAACATC 59.296 33.333 0.00 0.00 0.00 3.06
2962 3046 7.920682 GGACTGAACATTAACAAACAAACATCT 59.079 33.333 0.00 0.00 0.00 2.90
2963 3047 9.301153 GACTGAACATTAACAAACAAACATCTT 57.699 29.630 0.00 0.00 0.00 2.40
2990 3074 6.584185 TTCTTAATGCTAACCAAAGAACCC 57.416 37.500 0.00 0.00 32.70 4.11
2991 3075 5.636123 TCTTAATGCTAACCAAAGAACCCA 58.364 37.500 0.00 0.00 0.00 4.51
2992 3076 6.252995 TCTTAATGCTAACCAAAGAACCCAT 58.747 36.000 0.00 0.00 0.00 4.00
2993 3077 6.377146 TCTTAATGCTAACCAAAGAACCCATC 59.623 38.462 0.00 0.00 0.00 3.51
2994 3078 3.806949 TGCTAACCAAAGAACCCATCT 57.193 42.857 0.00 0.00 41.32 2.90
2995 3079 3.420893 TGCTAACCAAAGAACCCATCTG 58.579 45.455 0.00 0.00 38.79 2.90
2996 3080 3.073798 TGCTAACCAAAGAACCCATCTGA 59.926 43.478 0.00 0.00 38.79 3.27
2997 3081 4.263905 TGCTAACCAAAGAACCCATCTGAT 60.264 41.667 0.00 0.00 38.79 2.90
2998 3082 4.706962 GCTAACCAAAGAACCCATCTGATT 59.293 41.667 0.00 0.00 38.79 2.57
2999 3083 5.393461 GCTAACCAAAGAACCCATCTGATTG 60.393 44.000 0.00 0.00 38.79 2.67
3000 3084 4.118168 ACCAAAGAACCCATCTGATTGT 57.882 40.909 0.00 0.00 38.79 2.71
3001 3085 3.828451 ACCAAAGAACCCATCTGATTGTG 59.172 43.478 0.00 0.00 38.79 3.33
3002 3086 3.828451 CCAAAGAACCCATCTGATTGTGT 59.172 43.478 0.00 0.00 38.79 3.72
3003 3087 4.281688 CCAAAGAACCCATCTGATTGTGTT 59.718 41.667 0.00 0.00 38.79 3.32
3004 3088 5.476599 CCAAAGAACCCATCTGATTGTGTTA 59.523 40.000 0.00 0.00 38.79 2.41
3005 3089 6.015519 CCAAAGAACCCATCTGATTGTGTTAA 60.016 38.462 0.00 0.00 38.79 2.01
3006 3090 7.432869 CAAAGAACCCATCTGATTGTGTTAAA 58.567 34.615 0.00 0.00 38.79 1.52
3007 3091 7.595819 AAGAACCCATCTGATTGTGTTAAAA 57.404 32.000 0.00 0.00 38.79 1.52
3008 3092 6.981722 AGAACCCATCTGATTGTGTTAAAAC 58.018 36.000 0.00 0.00 36.88 2.43
3009 3093 6.777580 AGAACCCATCTGATTGTGTTAAAACT 59.222 34.615 0.00 0.00 36.88 2.66
3010 3094 6.331369 ACCCATCTGATTGTGTTAAAACTG 57.669 37.500 0.00 0.00 0.00 3.16
3011 3095 5.833131 ACCCATCTGATTGTGTTAAAACTGT 59.167 36.000 0.00 0.00 0.00 3.55
3012 3096 6.323739 ACCCATCTGATTGTGTTAAAACTGTT 59.676 34.615 0.00 0.00 0.00 3.16
3013 3097 6.642131 CCCATCTGATTGTGTTAAAACTGTTG 59.358 38.462 0.00 0.00 0.00 3.33
3014 3098 6.144402 CCATCTGATTGTGTTAAAACTGTTGC 59.856 38.462 0.00 0.00 0.00 4.17
3015 3099 5.587289 TCTGATTGTGTTAAAACTGTTGCC 58.413 37.500 0.00 0.00 0.00 4.52
3016 3100 5.126222 TCTGATTGTGTTAAAACTGTTGCCA 59.874 36.000 0.00 0.00 0.00 4.92
3017 3101 5.105752 TGATTGTGTTAAAACTGTTGCCAC 58.894 37.500 0.00 0.04 0.00 5.01
3018 3102 4.521130 TTGTGTTAAAACTGTTGCCACA 57.479 36.364 0.00 2.64 0.00 4.17
3019 3103 4.521130 TGTGTTAAAACTGTTGCCACAA 57.479 36.364 10.43 0.00 30.36 3.33
3020 3104 4.883083 TGTGTTAAAACTGTTGCCACAAA 58.117 34.783 10.43 0.71 30.36 2.83
3021 3105 5.482908 TGTGTTAAAACTGTTGCCACAAAT 58.517 33.333 10.43 0.00 30.36 2.32
3033 3117 5.761726 TGTTGCCACAAATAATGCAATTTGA 59.238 32.000 24.03 5.26 45.61 2.69
3040 3124 7.223971 CCACAAATAATGCAATTTGATCTCTGG 59.776 37.037 24.03 17.78 45.61 3.86
3075 3159 8.981647 GTGTTTATTCATTTGTTTGCAGAGATT 58.018 29.630 0.00 0.00 0.00 2.40
3129 3213 1.343465 CCTGAACCGACAACTGGTAGT 59.657 52.381 0.00 0.00 39.29 2.73
3146 3234 4.598373 TGGTAGTAAAGACCAAAGGCCTAA 59.402 41.667 5.16 0.00 44.08 2.69
3176 3278 6.403049 TGGAATAATGAACTCAACGCTCTAA 58.597 36.000 0.00 0.00 0.00 2.10
3197 3309 9.698309 CTCTAATACTCAAAGTGTCTCAAAGAA 57.302 33.333 0.00 0.00 0.00 2.52
3275 3390 2.923020 CGAATAAACCCATGCACTTTGC 59.077 45.455 0.00 0.00 45.29 3.68
3299 3414 5.445673 CGATCCATCGGTCTACGTCTTATAC 60.446 48.000 0.00 0.00 45.93 1.47
3300 3415 4.965814 TCCATCGGTCTACGTCTTATACT 58.034 43.478 0.00 0.00 44.69 2.12
3301 3416 4.993584 TCCATCGGTCTACGTCTTATACTC 59.006 45.833 0.00 0.00 44.69 2.59
3302 3417 4.153835 CCATCGGTCTACGTCTTATACTCC 59.846 50.000 0.00 0.00 44.69 3.85
3303 3418 3.733337 TCGGTCTACGTCTTATACTCCC 58.267 50.000 0.00 0.00 44.69 4.30
3304 3419 3.389329 TCGGTCTACGTCTTATACTCCCT 59.611 47.826 0.00 0.00 44.69 4.20
3305 3420 3.745458 CGGTCTACGTCTTATACTCCCTC 59.255 52.174 0.00 0.00 37.93 4.30
3306 3421 4.071423 GGTCTACGTCTTATACTCCCTCC 58.929 52.174 0.00 0.00 0.00 4.30
3307 3422 3.745458 GTCTACGTCTTATACTCCCTCCG 59.255 52.174 0.00 0.00 0.00 4.63
3308 3423 2.725221 ACGTCTTATACTCCCTCCGT 57.275 50.000 0.00 0.00 0.00 4.69
3309 3424 3.010200 ACGTCTTATACTCCCTCCGTT 57.990 47.619 0.00 0.00 0.00 4.44
3310 3425 3.359950 ACGTCTTATACTCCCTCCGTTT 58.640 45.455 0.00 0.00 0.00 3.60
3311 3426 3.129988 ACGTCTTATACTCCCTCCGTTTG 59.870 47.826 0.00 0.00 0.00 2.93
3312 3427 3.490419 CGTCTTATACTCCCTCCGTTTGG 60.490 52.174 0.00 0.00 0.00 3.28
3313 3428 3.703052 GTCTTATACTCCCTCCGTTTGGA 59.297 47.826 0.00 0.00 43.88 3.53
3314 3429 4.161001 GTCTTATACTCCCTCCGTTTGGAA 59.839 45.833 0.00 0.00 45.87 3.53
3315 3430 4.966805 TCTTATACTCCCTCCGTTTGGAAT 59.033 41.667 0.00 0.00 45.87 3.01
3316 3431 5.427481 TCTTATACTCCCTCCGTTTGGAATT 59.573 40.000 0.00 0.00 45.87 2.17
3317 3432 6.612456 TCTTATACTCCCTCCGTTTGGAATTA 59.388 38.462 0.00 0.00 45.87 1.40
3318 3433 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
3319 3434 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
3320 3435 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
3321 3436 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
3322 3437 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
3323 3438 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
3324 3439 3.124636 CCTCCGTTTGGAATTACTTGTCG 59.875 47.826 0.00 0.00 45.87 4.35
3325 3440 2.481185 TCCGTTTGGAATTACTTGTCGC 59.519 45.455 0.00 0.00 42.85 5.19
3326 3441 2.224549 CCGTTTGGAATTACTTGTCGCA 59.775 45.455 0.00 0.00 37.49 5.10
3327 3442 3.119990 CCGTTTGGAATTACTTGTCGCAT 60.120 43.478 0.00 0.00 37.49 4.73
3328 3443 4.093703 CCGTTTGGAATTACTTGTCGCATA 59.906 41.667 0.00 0.00 37.49 3.14
3329 3444 5.391097 CCGTTTGGAATTACTTGTCGCATAA 60.391 40.000 0.00 0.00 37.49 1.90
3330 3445 6.081049 CGTTTGGAATTACTTGTCGCATAAA 58.919 36.000 0.00 0.00 0.00 1.40
3331 3446 6.745450 CGTTTGGAATTACTTGTCGCATAAAT 59.255 34.615 0.00 0.00 0.00 1.40
3332 3447 7.906010 CGTTTGGAATTACTTGTCGCATAAATA 59.094 33.333 0.00 0.00 0.00 1.40
3333 3448 9.221775 GTTTGGAATTACTTGTCGCATAAATAG 57.778 33.333 0.00 0.00 0.00 1.73
3334 3449 8.725405 TTGGAATTACTTGTCGCATAAATAGA 57.275 30.769 0.00 0.00 0.00 1.98
3335 3450 8.902540 TGGAATTACTTGTCGCATAAATAGAT 57.097 30.769 0.00 0.00 0.00 1.98
3336 3451 8.773645 TGGAATTACTTGTCGCATAAATAGATG 58.226 33.333 0.00 0.00 0.00 2.90
3337 3452 8.774586 GGAATTACTTGTCGCATAAATAGATGT 58.225 33.333 0.00 0.00 0.00 3.06
3343 3458 9.847706 ACTTGTCGCATAAATAGATGTATCTAG 57.152 33.333 7.57 0.00 42.20 2.43
3345 3460 9.841880 TTGTCGCATAAATAGATGTATCTAGAC 57.158 33.333 0.00 7.60 42.20 2.59
3346 3461 8.175716 TGTCGCATAAATAGATGTATCTAGACG 58.824 37.037 0.00 5.27 42.20 4.18
3347 3462 8.176365 GTCGCATAAATAGATGTATCTAGACGT 58.824 37.037 0.00 0.00 42.20 4.34
3348 3463 9.374838 TCGCATAAATAGATGTATCTAGACGTA 57.625 33.333 0.00 0.00 42.20 3.57
3377 3492 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
3378 3493 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
3379 3494 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
3380 3495 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
3381 3496 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
3382 3497 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
3383 3498 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
3384 3499 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
3385 3500 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
3386 3501 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
3387 3502 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
3388 3503 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
3389 3504 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
3390 3505 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
3391 3506 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
3392 3507 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
3393 3508 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
3394 3509 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
3395 3510 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3396 3511 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3397 3512 4.430908 GAGACAAGTAATTCCGAACGGAT 58.569 43.478 16.57 5.74 44.74 4.18
3398 3513 4.181578 AGACAAGTAATTCCGAACGGATG 58.818 43.478 16.57 12.63 44.74 3.51
3399 3514 3.267483 ACAAGTAATTCCGAACGGATGG 58.733 45.455 16.57 2.01 44.74 3.51
3400 3515 3.055675 ACAAGTAATTCCGAACGGATGGA 60.056 43.478 16.57 2.72 44.74 3.41
3401 3516 3.454371 AGTAATTCCGAACGGATGGAG 57.546 47.619 16.57 0.00 44.74 3.86
3402 3517 2.764572 AGTAATTCCGAACGGATGGAGT 59.235 45.455 16.57 4.39 44.74 3.85
3403 3518 3.956199 AGTAATTCCGAACGGATGGAGTA 59.044 43.478 16.57 3.44 44.74 2.59
3404 3519 3.454371 AATTCCGAACGGATGGAGTAG 57.546 47.619 16.57 0.00 44.74 2.57
3405 3520 1.843368 TTCCGAACGGATGGAGTAGT 58.157 50.000 16.57 0.00 44.74 2.73
3406 3521 2.715749 TCCGAACGGATGGAGTAGTA 57.284 50.000 12.04 0.00 39.76 1.82
3407 3522 3.219176 TCCGAACGGATGGAGTAGTAT 57.781 47.619 12.04 0.00 39.76 2.12
3408 3523 4.356405 TCCGAACGGATGGAGTAGTATA 57.644 45.455 12.04 0.00 39.76 1.47
3409 3524 4.914983 TCCGAACGGATGGAGTAGTATAT 58.085 43.478 12.04 0.00 39.76 0.86
3410 3525 5.319453 TCCGAACGGATGGAGTAGTATATT 58.681 41.667 12.04 0.00 39.76 1.28
3411 3526 5.182570 TCCGAACGGATGGAGTAGTATATTG 59.817 44.000 12.04 0.00 39.76 1.90
3412 3527 5.399858 CGAACGGATGGAGTAGTATATTGG 58.600 45.833 0.00 0.00 0.00 3.16
3424 3539 8.472413 GGAGTAGTATATTGGAACGCCATTATA 58.528 37.037 0.00 0.00 45.46 0.98
3483 3601 7.891498 TTTAAAGAAGGTTAAAGCCTCTTGT 57.109 32.000 0.00 0.00 38.03 3.16
3489 3607 6.442244 AGAAGGTTAAAGCCTCTTGTCTCTAT 59.558 38.462 0.00 0.00 38.03 1.98
3566 3684 3.206150 ACATACATCAAGCCATCCGAAC 58.794 45.455 0.00 0.00 0.00 3.95
3580 3698 0.459585 CCGAACCCACCACTCATACG 60.460 60.000 0.00 0.00 0.00 3.06
3594 3712 6.039047 ACCACTCATACGTACAAACTCGATAT 59.961 38.462 0.00 0.00 0.00 1.63
3627 3745 7.816995 GTGCTCTCACTCCCTATATCTAAAATG 59.183 40.741 0.00 0.00 40.03 2.32
3666 3784 1.404748 TCCGCATAACGTATCGGAACA 59.595 47.619 14.96 0.00 46.59 3.18
3672 3790 5.051574 CGCATAACGTATCGGAACATACAAA 60.052 40.000 0.00 0.00 36.87 2.83
3674 3792 6.642917 CATAACGTATCGGAACATACAAACC 58.357 40.000 0.00 0.00 30.61 3.27
3685 3803 2.295909 ACATACAAACCGTGCAGCAAAT 59.704 40.909 0.00 0.00 0.00 2.32
3691 3809 4.236935 CAAACCGTGCAGCAAATCTAAAT 58.763 39.130 0.00 0.00 0.00 1.40
3704 3822 7.011016 CAGCAAATCTAAATCGTACACCACATA 59.989 37.037 0.00 0.00 0.00 2.29
3756 3874 0.179089 CCGCTGACCCATCTTCAGAG 60.179 60.000 3.53 0.06 42.81 3.35
3761 3879 4.268359 GCTGACCCATCTTCAGAGAAAAT 58.732 43.478 3.53 0.00 42.81 1.82
3774 3892 9.404848 TCTTCAGAGAAAATATTTGCATCATCT 57.595 29.630 8.91 3.49 0.00 2.90
3796 3914 2.348104 CCAGTCCGACCATCCGTCA 61.348 63.158 0.00 0.00 42.07 4.35
3806 3924 1.340893 ACCATCCGTCAATGCCATCAA 60.341 47.619 0.00 0.00 0.00 2.57
3873 3996 4.501714 GGTCGCCGCCGATACACA 62.502 66.667 0.00 0.00 46.38 3.72
3880 4003 1.884464 CGCCGATACACAGCAGCAT 60.884 57.895 0.00 0.00 0.00 3.79
3887 4010 0.253894 TACACAGCAGCATCATGCCT 59.746 50.000 5.84 0.00 46.52 4.75
3911 4034 0.179029 GTACCACCAGCCAACACAGT 60.179 55.000 0.00 0.00 0.00 3.55
3916 4039 1.066002 CACCAGCCAACACAGTTTGAG 59.934 52.381 0.00 0.00 0.00 3.02
3924 4047 1.507140 ACACAGTTTGAGGTCCCTGA 58.493 50.000 0.00 0.00 0.00 3.86
3968 4091 1.270274 GCCAAACATGCATGACACAGA 59.730 47.619 32.75 0.00 0.00 3.41
4012 4135 1.971357 ACTTGACATCTCCACCGAAGT 59.029 47.619 0.00 0.00 0.00 3.01
4024 4147 1.879380 CACCGAAGTTCCATGCAAGAA 59.121 47.619 0.00 0.00 0.00 2.52
4043 4166 0.614979 AGAAGCCGCTTCACCTCCTA 60.615 55.000 30.05 0.00 42.37 2.94
4057 4180 2.111972 ACCTCCTACCTCTGTCTTCCAA 59.888 50.000 0.00 0.00 0.00 3.53
4066 4189 3.432186 CCTCTGTCTTCCAACACTGTTCA 60.432 47.826 0.00 0.00 0.00 3.18
4068 4191 4.780815 TCTGTCTTCCAACACTGTTCAAT 58.219 39.130 0.00 0.00 0.00 2.57
4083 4207 3.689161 TGTTCAATAAACGATGCTCCCAG 59.311 43.478 0.00 0.00 41.02 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.942130 TCTTGATCGCAGAGAAGACAA 57.058 42.857 0.00 0.00 43.63 3.18
15 16 1.134401 TCATCTGGGGTTCTTGATCGC 60.134 52.381 0.00 0.00 0.00 4.58
16 17 2.988010 TCATCTGGGGTTCTTGATCG 57.012 50.000 0.00 0.00 0.00 3.69
20 21 2.133281 TGCATCATCTGGGGTTCTTG 57.867 50.000 0.00 0.00 0.00 3.02
29 30 2.414994 AGGAGGTGTTGCATCATCTG 57.585 50.000 15.23 0.00 0.00 2.90
49 50 1.188219 AGGAGAAGGAGCAACTCGCA 61.188 55.000 0.00 0.00 46.13 5.10
53 54 1.130054 TGGCAGGAGAAGGAGCAACT 61.130 55.000 0.00 0.00 0.00 3.16
55 56 1.681666 CTGGCAGGAGAAGGAGCAA 59.318 57.895 6.61 0.00 0.00 3.91
81 82 1.021390 GCACCAAGACATCACCTCGG 61.021 60.000 0.00 0.00 0.00 4.63
109 110 1.443407 CTGGCTAGGGATCACGGTG 59.557 63.158 0.56 0.56 0.00 4.94
110 111 1.762460 CCTGGCTAGGGATCACGGT 60.762 63.158 8.57 0.00 40.63 4.83
113 114 0.755698 TCGTCCTGGCTAGGGATCAC 60.756 60.000 17.16 5.93 44.70 3.06
133 134 5.624509 CGAGGACAACCAGATAATGAACTCA 60.625 44.000 0.00 0.00 38.94 3.41
144 145 1.899437 GATGGCCGAGGACAACCAGA 61.899 60.000 0.01 0.00 36.35 3.86
194 195 1.228367 GGATGGCAATGGAGGCGAT 60.228 57.895 0.00 0.00 36.77 4.58
211 212 2.947652 CCAAAGCTACCATGTCATGAGG 59.052 50.000 14.67 0.84 0.00 3.86
212 213 3.877559 TCCAAAGCTACCATGTCATGAG 58.122 45.455 14.67 5.82 0.00 2.90
213 214 3.998913 TCCAAAGCTACCATGTCATGA 57.001 42.857 14.67 0.00 0.00 3.07
214 215 4.627611 CTTCCAAAGCTACCATGTCATG 57.372 45.455 5.79 5.79 0.00 3.07
247 248 3.777925 CGCCGTCGGAAAGTGCAG 61.778 66.667 17.49 0.00 0.00 4.41
253 254 4.668118 GGTGGTCGCCGTCGGAAA 62.668 66.667 17.49 0.00 36.13 3.13
263 264 1.374758 GCTCACAGAAGGGTGGTCG 60.375 63.158 0.00 0.00 39.27 4.79
293 294 4.731853 TCCTCCCGGATGGTGGCA 62.732 66.667 0.73 0.00 45.79 4.92
296 297 3.866582 GCCTCCTCCCGGATGGTG 61.867 72.222 0.73 5.36 39.01 4.17
297 298 3.943137 TTGCCTCCTCCCGGATGGT 62.943 63.158 0.73 0.00 39.01 3.55
298 299 3.089874 TTGCCTCCTCCCGGATGG 61.090 66.667 0.73 4.37 39.01 3.51
331 332 4.143333 CTAGTCCCGTGGCACCCG 62.143 72.222 12.86 0.54 0.00 5.28
341 342 1.405661 GGCAGTACAAGTGCTAGTCCC 60.406 57.143 6.68 0.00 43.82 4.46
353 354 2.484742 TCTACGTCTCTGGCAGTACA 57.515 50.000 15.27 0.00 0.00 2.90
354 355 4.023878 CCTAATCTACGTCTCTGGCAGTAC 60.024 50.000 15.27 12.84 0.00 2.73
361 362 2.588620 AGGCCCTAATCTACGTCTCTG 58.411 52.381 0.00 0.00 0.00 3.35
392 393 0.179100 CATAGGGAGGTGTCAGTGCG 60.179 60.000 0.00 0.00 0.00 5.34
397 398 1.182667 CGTCACATAGGGAGGTGTCA 58.817 55.000 0.00 0.00 38.52 3.58
398 399 1.135083 CACGTCACATAGGGAGGTGTC 60.135 57.143 12.50 0.00 42.87 3.67
405 406 1.815421 GCAGCCACGTCACATAGGG 60.815 63.158 0.00 0.00 0.00 3.53
409 410 1.669115 GTCAGCAGCCACGTCACAT 60.669 57.895 0.00 0.00 0.00 3.21
424 425 2.483197 GCATGGATGGCATGCGTCA 61.483 57.895 19.39 10.87 44.59 4.35
442 444 2.034879 GGGGTGTCGAGCATGTGTG 61.035 63.158 0.00 0.00 0.00 3.82
443 445 2.347490 GGGGTGTCGAGCATGTGT 59.653 61.111 0.00 0.00 0.00 3.72
453 455 1.957668 ACAACAACTTACGGGGTGTC 58.042 50.000 0.00 0.00 0.00 3.67
481 483 9.670442 ATTGATAGGTAGGATGGAGTTTAGTAA 57.330 33.333 0.00 0.00 0.00 2.24
491 493 5.563592 TCATTGCATTGATAGGTAGGATGG 58.436 41.667 7.19 0.00 0.00 3.51
494 496 6.825213 GCATATCATTGCATTGATAGGTAGGA 59.175 38.462 29.26 14.21 40.65 2.94
554 556 5.237779 TCGCGACTTATTTTGTTCTTTCCTT 59.762 36.000 3.71 0.00 0.00 3.36
559 561 5.227908 TCTCTCGCGACTTATTTTGTTCTT 58.772 37.500 3.71 0.00 0.00 2.52
564 566 3.770666 TCCTCTCTCGCGACTTATTTTG 58.229 45.455 3.71 0.00 0.00 2.44
566 568 2.359531 CCTCCTCTCTCGCGACTTATTT 59.640 50.000 3.71 0.00 0.00 1.40
567 569 1.950909 CCTCCTCTCTCGCGACTTATT 59.049 52.381 3.71 0.00 0.00 1.40
572 574 1.153329 TCTCCTCCTCTCTCGCGAC 60.153 63.158 3.71 0.00 0.00 5.19
625 627 1.039233 CCTCCCGACGCCCTTTAGTA 61.039 60.000 0.00 0.00 0.00 1.82
636 638 4.525949 GCCCGTTAGCCTCCCGAC 62.526 72.222 0.00 0.00 0.00 4.79
665 667 2.151202 GAGTCGAATTGCTTGTTGGGA 58.849 47.619 0.00 0.00 0.00 4.37
713 715 3.569194 TGTTTACTCTGTTGGGCTTCA 57.431 42.857 0.00 0.00 0.00 3.02
714 716 3.004419 GGTTGTTTACTCTGTTGGGCTTC 59.996 47.826 0.00 0.00 0.00 3.86
718 720 2.841215 TCGGTTGTTTACTCTGTTGGG 58.159 47.619 0.00 0.00 0.00 4.12
720 722 3.623960 TGGTTCGGTTGTTTACTCTGTTG 59.376 43.478 0.00 0.00 0.00 3.33
728 730 5.452077 CCCATTCTTTTGGTTCGGTTGTTTA 60.452 40.000 0.00 0.00 34.77 2.01
752 754 1.664873 TGCTGCTCTGAGATTCATGC 58.335 50.000 9.28 3.38 0.00 4.06
773 775 8.017418 TCAATTTTAAATTTGGGTCAGTCAGT 57.983 30.769 18.10 0.00 0.00 3.41
774 776 7.599998 CCTCAATTTTAAATTTGGGTCAGTCAG 59.400 37.037 17.25 8.48 0.00 3.51
775 777 7.441017 CCTCAATTTTAAATTTGGGTCAGTCA 58.559 34.615 17.25 1.28 0.00 3.41
797 799 1.258676 AGCTATACCTAAGCCGCCTC 58.741 55.000 0.00 0.00 41.02 4.70
847 850 2.031870 GGAAAGGATTAAATGGCCGCT 58.968 47.619 0.00 0.00 0.00 5.52
860 863 1.075601 ATTGGCTCCAGTGGAAAGGA 58.924 50.000 14.17 0.29 0.00 3.36
864 867 0.770499 TCACATTGGCTCCAGTGGAA 59.230 50.000 14.17 0.00 37.87 3.53
890 893 1.229209 ATCGTCTGTGGAGGGTGGT 60.229 57.895 0.00 0.00 0.00 4.16
902 905 1.698506 GTCAGGATGGAGGATCGTCT 58.301 55.000 14.65 0.00 36.16 4.18
948 951 1.012486 GGACGAGCACAAAGGGTACG 61.012 60.000 0.00 0.00 0.00 3.67
1152 1168 3.531538 CTCGCCTGCCTCTGTAAATTAA 58.468 45.455 0.00 0.00 0.00 1.40
1154 1170 1.407437 CCTCGCCTGCCTCTGTAAATT 60.407 52.381 0.00 0.00 0.00 1.82
1155 1171 0.179000 CCTCGCCTGCCTCTGTAAAT 59.821 55.000 0.00 0.00 0.00 1.40
1610 1632 1.068588 TGTCGTCCTTGAACTCACCTG 59.931 52.381 0.00 0.00 0.00 4.00
1788 1810 4.371417 TAGGTGAGGCCGGTCCGT 62.371 66.667 11.06 0.00 43.70 4.69
1830 1852 3.494626 CCATCGCATAATACACAGTGTCC 59.505 47.826 10.23 0.00 0.00 4.02
1834 1856 4.262207 CCTCTCCATCGCATAATACACAGT 60.262 45.833 0.00 0.00 0.00 3.55
1889 1911 1.660167 CCTGAGCATTCGCATCTTCA 58.340 50.000 0.00 0.00 42.27 3.02
1897 1919 1.821332 GCCTTCCCCTGAGCATTCG 60.821 63.158 0.00 0.00 0.00 3.34
2133 2182 1.067776 CCGTAGTTTTGCTCCTCGACT 60.068 52.381 0.00 0.00 0.00 4.18
2212 2261 2.667536 CTCGCACCAGCTGCTTGT 60.668 61.111 8.66 0.00 44.64 3.16
2496 2563 1.808343 GGTATTGGACGGACAACAACC 59.192 52.381 10.07 10.07 34.53 3.77
2524 2591 4.215349 GCCCAGTGCAGTGAGATC 57.785 61.111 23.34 4.99 40.77 2.75
2547 2614 0.030101 CGTCACCGCAAACAAACCAT 59.970 50.000 0.00 0.00 0.00 3.55
2549 2616 1.298788 CCGTCACCGCAAACAAACC 60.299 57.895 0.00 0.00 0.00 3.27
2555 2622 0.390603 CCTATCACCGTCACCGCAAA 60.391 55.000 0.00 0.00 0.00 3.68
2556 2623 1.216977 CCTATCACCGTCACCGCAA 59.783 57.895 0.00 0.00 0.00 4.85
2560 2627 4.515404 GTGCCTATCACCGTCACC 57.485 61.111 0.00 0.00 39.79 4.02
2704 2771 3.057736 CCTTTGTGTCAGGATCAAAGCAG 60.058 47.826 16.82 7.47 43.49 4.24
2773 2840 2.267006 CATGAGCTGCCAGACCGT 59.733 61.111 0.00 0.00 0.00 4.83
2821 2888 0.179020 TGAACTCACTTGGTGCCTGG 60.179 55.000 0.00 0.00 32.98 4.45
2886 2970 3.181503 CCATGCGAAGAGGAAATGAACTG 60.182 47.826 0.00 0.00 0.00 3.16
2921 3005 5.869344 TGTTCAGTCCAAATACGAGAATCAG 59.131 40.000 0.00 0.00 33.17 2.90
2923 3007 6.910536 ATGTTCAGTCCAAATACGAGAATC 57.089 37.500 0.00 0.00 0.00 2.52
2964 3048 8.094548 GGGTTCTTTGGTTAGCATTAAGAATTT 58.905 33.333 12.43 0.00 37.23 1.82
2965 3049 7.234577 TGGGTTCTTTGGTTAGCATTAAGAATT 59.765 33.333 12.43 0.00 37.23 2.17
2966 3050 6.723977 TGGGTTCTTTGGTTAGCATTAAGAAT 59.276 34.615 12.43 0.00 37.23 2.40
2967 3051 6.071984 TGGGTTCTTTGGTTAGCATTAAGAA 58.928 36.000 7.06 7.06 33.72 2.52
2968 3052 5.636123 TGGGTTCTTTGGTTAGCATTAAGA 58.364 37.500 0.00 0.00 0.00 2.10
2969 3053 5.975693 TGGGTTCTTTGGTTAGCATTAAG 57.024 39.130 0.00 0.00 0.00 1.85
2970 3054 6.152661 CAGATGGGTTCTTTGGTTAGCATTAA 59.847 38.462 0.00 0.00 29.93 1.40
2971 3055 5.652014 CAGATGGGTTCTTTGGTTAGCATTA 59.348 40.000 0.00 0.00 29.93 1.90
2972 3056 4.463891 CAGATGGGTTCTTTGGTTAGCATT 59.536 41.667 0.00 0.00 29.93 3.56
2973 3057 4.019174 CAGATGGGTTCTTTGGTTAGCAT 58.981 43.478 0.00 0.00 29.93 3.79
2974 3058 3.073798 TCAGATGGGTTCTTTGGTTAGCA 59.926 43.478 0.00 0.00 29.93 3.49
2975 3059 3.686016 TCAGATGGGTTCTTTGGTTAGC 58.314 45.455 0.00 0.00 29.93 3.09
2976 3060 5.711976 ACAATCAGATGGGTTCTTTGGTTAG 59.288 40.000 0.00 0.00 29.83 2.34
2977 3061 5.476599 CACAATCAGATGGGTTCTTTGGTTA 59.523 40.000 0.00 0.00 29.83 2.85
2978 3062 4.281688 CACAATCAGATGGGTTCTTTGGTT 59.718 41.667 0.00 0.00 29.83 3.67
2979 3063 3.828451 CACAATCAGATGGGTTCTTTGGT 59.172 43.478 0.00 0.00 29.83 3.67
2980 3064 3.828451 ACACAATCAGATGGGTTCTTTGG 59.172 43.478 0.00 0.00 31.37 3.28
2981 3065 5.458041 AACACAATCAGATGGGTTCTTTG 57.542 39.130 0.00 0.00 43.25 2.77
2982 3066 7.595819 TTTAACACAATCAGATGGGTTCTTT 57.404 32.000 0.00 0.00 43.25 2.52
2983 3067 7.287696 AGTTTTAACACAATCAGATGGGTTCTT 59.712 33.333 0.00 0.00 43.25 2.52
2984 3068 6.777580 AGTTTTAACACAATCAGATGGGTTCT 59.222 34.615 0.00 0.00 43.25 3.01
2985 3069 6.863126 CAGTTTTAACACAATCAGATGGGTTC 59.137 38.462 0.00 0.00 43.25 3.62
2987 3071 5.833131 ACAGTTTTAACACAATCAGATGGGT 59.167 36.000 0.00 0.00 39.01 4.51
2988 3072 6.331369 ACAGTTTTAACACAATCAGATGGG 57.669 37.500 0.00 0.00 0.00 4.00
2989 3073 6.144402 GCAACAGTTTTAACACAATCAGATGG 59.856 38.462 0.00 0.00 0.00 3.51
2990 3074 6.144402 GGCAACAGTTTTAACACAATCAGATG 59.856 38.462 0.00 0.00 0.00 2.90
2991 3075 6.183360 TGGCAACAGTTTTAACACAATCAGAT 60.183 34.615 0.00 0.00 46.17 2.90
2992 3076 5.126222 TGGCAACAGTTTTAACACAATCAGA 59.874 36.000 0.00 0.00 46.17 3.27
2993 3077 5.347342 TGGCAACAGTTTTAACACAATCAG 58.653 37.500 0.00 0.00 46.17 2.90
2994 3078 5.330455 TGGCAACAGTTTTAACACAATCA 57.670 34.783 0.00 0.00 46.17 2.57
3012 3096 6.408035 AGATCAAATTGCATTATTTGTGGCA 58.592 32.000 18.70 5.09 43.03 4.92
3013 3097 6.759827 AGAGATCAAATTGCATTATTTGTGGC 59.240 34.615 18.70 11.68 43.03 5.01
3014 3098 7.223971 CCAGAGATCAAATTGCATTATTTGTGG 59.776 37.037 18.70 15.35 43.03 4.17
3015 3099 7.762615 ACCAGAGATCAAATTGCATTATTTGTG 59.237 33.333 18.70 11.64 43.03 3.33
3016 3100 7.844009 ACCAGAGATCAAATTGCATTATTTGT 58.156 30.769 18.70 9.78 43.03 2.83
3017 3101 8.712285 AACCAGAGATCAAATTGCATTATTTG 57.288 30.769 14.96 14.96 43.58 2.32
3075 3159 3.648982 CGCAGCACGCAGTTTCCA 61.649 61.111 0.00 0.00 41.61 3.53
3129 3213 5.710409 AGCTATTAGGCCTTTGGTCTTTA 57.290 39.130 12.58 0.00 39.09 1.85
3146 3234 6.238484 GCGTTGAGTTCATTATTCCAAGCTAT 60.238 38.462 0.00 0.00 0.00 2.97
3176 3278 8.964476 TTCTTTCTTTGAGACACTTTGAGTAT 57.036 30.769 0.00 0.00 0.00 2.12
3281 3396 4.041444 AGGGAGTATAAGACGTAGACCGAT 59.959 45.833 0.00 0.00 40.70 4.18
3299 3414 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
3300 3415 3.073356 ACAAGTAATTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
3301 3416 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
3302 3417 3.124636 CGACAAGTAATTCCAAACGGAGG 59.875 47.826 0.00 0.00 32.88 4.30
3303 3418 3.424433 GCGACAAGTAATTCCAAACGGAG 60.424 47.826 0.00 0.00 32.88 4.63
3304 3419 2.481185 GCGACAAGTAATTCCAAACGGA 59.519 45.455 0.00 0.00 0.00 4.69
3305 3420 2.224549 TGCGACAAGTAATTCCAAACGG 59.775 45.455 0.00 0.00 0.00 4.44
3306 3421 3.529634 TGCGACAAGTAATTCCAAACG 57.470 42.857 0.00 0.00 0.00 3.60
3307 3422 9.221775 CTATTTATGCGACAAGTAATTCCAAAC 57.778 33.333 0.00 0.00 0.00 2.93
3308 3423 9.168451 TCTATTTATGCGACAAGTAATTCCAAA 57.832 29.630 0.00 0.00 0.00 3.28
3309 3424 8.725405 TCTATTTATGCGACAAGTAATTCCAA 57.275 30.769 0.00 0.00 0.00 3.53
3310 3425 8.773645 CATCTATTTATGCGACAAGTAATTCCA 58.226 33.333 0.00 0.00 0.00 3.53
3311 3426 8.774586 ACATCTATTTATGCGACAAGTAATTCC 58.225 33.333 0.00 0.00 0.00 3.01
3317 3432 9.847706 CTAGATACATCTATTTATGCGACAAGT 57.152 33.333 0.00 0.00 38.60 3.16
3319 3434 9.841880 GTCTAGATACATCTATTTATGCGACAA 57.158 33.333 0.00 0.00 38.60 3.18
3320 3435 8.175716 CGTCTAGATACATCTATTTATGCGACA 58.824 37.037 0.00 0.00 38.60 4.35
3321 3436 8.176365 ACGTCTAGATACATCTATTTATGCGAC 58.824 37.037 0.00 2.21 38.60 5.19
3322 3437 8.265165 ACGTCTAGATACATCTATTTATGCGA 57.735 34.615 0.00 0.00 38.60 5.10
3351 3466 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
3352 3467 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
3353 3468 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
3354 3469 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
3355 3470 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
3356 3471 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
3357 3472 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
3358 3473 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
3359 3474 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
3360 3475 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
3361 3476 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
3362 3477 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
3363 3478 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
3364 3479 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
3365 3480 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
3366 3481 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
3367 3482 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
3368 3483 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
3369 3484 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
3370 3485 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
3371 3486 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
3372 3487 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
3373 3488 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
3374 3489 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3375 3490 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3376 3491 3.947910 TCCGTTCGGAATTACTTGTCT 57.052 42.857 11.66 0.00 0.00 3.41
3377 3492 3.308866 CCATCCGTTCGGAATTACTTGTC 59.691 47.826 17.72 0.00 37.88 3.18
3378 3493 3.055675 TCCATCCGTTCGGAATTACTTGT 60.056 43.478 17.72 0.00 37.88 3.16
3379 3494 3.527533 TCCATCCGTTCGGAATTACTTG 58.472 45.455 17.72 10.09 37.88 3.16
3380 3495 3.197116 ACTCCATCCGTTCGGAATTACTT 59.803 43.478 17.72 0.00 37.88 2.24
3381 3496 2.764572 ACTCCATCCGTTCGGAATTACT 59.235 45.455 17.72 0.00 37.88 2.24
3382 3497 3.175109 ACTCCATCCGTTCGGAATTAC 57.825 47.619 17.72 0.00 37.88 1.89
3383 3498 3.956199 ACTACTCCATCCGTTCGGAATTA 59.044 43.478 17.72 5.51 37.88 1.40
3384 3499 2.764572 ACTACTCCATCCGTTCGGAATT 59.235 45.455 17.72 0.00 37.88 2.17
3385 3500 2.385803 ACTACTCCATCCGTTCGGAAT 58.614 47.619 17.72 4.49 37.88 3.01
3386 3501 1.843368 ACTACTCCATCCGTTCGGAA 58.157 50.000 17.72 1.17 37.88 4.30
3387 3502 2.715749 TACTACTCCATCCGTTCGGA 57.284 50.000 16.22 16.22 38.82 4.55
3388 3503 5.399858 CAATATACTACTCCATCCGTTCGG 58.600 45.833 4.74 4.74 0.00 4.30
3389 3504 5.182570 TCCAATATACTACTCCATCCGTTCG 59.817 44.000 0.00 0.00 0.00 3.95
3390 3505 6.585695 TCCAATATACTACTCCATCCGTTC 57.414 41.667 0.00 0.00 0.00 3.95
3391 3506 6.516194 CGTTCCAATATACTACTCCATCCGTT 60.516 42.308 0.00 0.00 0.00 4.44
3392 3507 5.048224 CGTTCCAATATACTACTCCATCCGT 60.048 44.000 0.00 0.00 0.00 4.69
3393 3508 5.399858 CGTTCCAATATACTACTCCATCCG 58.600 45.833 0.00 0.00 0.00 4.18
3394 3509 5.169295 GCGTTCCAATATACTACTCCATCC 58.831 45.833 0.00 0.00 0.00 3.51
3395 3510 5.169295 GGCGTTCCAATATACTACTCCATC 58.831 45.833 0.00 0.00 0.00 3.51
3396 3511 4.591498 TGGCGTTCCAATATACTACTCCAT 59.409 41.667 0.00 0.00 39.99 3.41
3397 3512 3.962063 TGGCGTTCCAATATACTACTCCA 59.038 43.478 0.00 0.00 39.99 3.86
3398 3513 4.595762 TGGCGTTCCAATATACTACTCC 57.404 45.455 0.00 0.00 39.99 3.85
3411 3526 5.701290 AGCAAAGATACTATAATGGCGTTCC 59.299 40.000 0.00 0.00 0.00 3.62
3412 3527 6.593978 CAGCAAAGATACTATAATGGCGTTC 58.406 40.000 0.00 0.00 0.00 3.95
3475 3593 6.260870 TCGATTGATATAGAGACAAGAGGC 57.739 41.667 0.00 0.00 0.00 4.70
3483 3601 7.976175 GGTTGTATGCATCGATTGATATAGAGA 59.024 37.037 0.19 0.00 32.18 3.10
3489 3607 6.466812 AGATGGTTGTATGCATCGATTGATA 58.533 36.000 0.19 0.00 32.18 2.15
3536 3654 6.154203 TGGCTTGATGTATGTTTTTGTCAA 57.846 33.333 0.00 0.00 0.00 3.18
3566 3684 2.997986 GTTTGTACGTATGAGTGGTGGG 59.002 50.000 0.00 0.00 0.00 4.61
3615 3733 3.055675 CGACGGCCCCCATTTTAGATATA 60.056 47.826 0.00 0.00 0.00 0.86
3666 3784 2.819608 AGATTTGCTGCACGGTTTGTAT 59.180 40.909 0.00 0.00 0.00 2.29
3672 3790 2.095853 CGATTTAGATTTGCTGCACGGT 59.904 45.455 0.00 0.00 0.00 4.83
3674 3792 3.389687 ACGATTTAGATTTGCTGCACG 57.610 42.857 0.00 1.50 0.00 5.34
3685 3803 6.094719 GTGTGTATGTGGTGTACGATTTAGA 58.905 40.000 0.00 0.00 0.00 2.10
3691 3809 1.608109 ACGTGTGTATGTGGTGTACGA 59.392 47.619 0.00 0.00 34.52 3.43
3704 3822 1.862827 GTCGGCTTCTAAAACGTGTGT 59.137 47.619 0.00 0.00 0.00 3.72
3756 3874 7.279313 ACTGGCAAAGATGATGCAAATATTTTC 59.721 33.333 0.00 0.00 45.60 2.29
3761 3879 4.098349 GGACTGGCAAAGATGATGCAAATA 59.902 41.667 0.00 0.00 45.60 1.40
3774 3892 1.002624 GGATGGTCGGACTGGCAAA 60.003 57.895 8.23 0.00 0.00 3.68
3873 3996 0.752009 CTTGGAGGCATGATGCTGCT 60.752 55.000 17.84 6.63 44.28 4.24
3880 4003 0.618458 GGTGGTACTTGGAGGCATGA 59.382 55.000 0.00 0.00 0.00 3.07
3887 4010 0.109723 GTTGGCTGGTGGTACTTGGA 59.890 55.000 0.00 0.00 0.00 3.53
3911 4034 3.652869 ACAGATCTTTCAGGGACCTCAAA 59.347 43.478 0.00 0.00 0.00 2.69
3916 4039 1.550976 ACGACAGATCTTTCAGGGACC 59.449 52.381 9.47 0.00 0.00 4.46
3924 4047 3.243336 GTTCTACGCACGACAGATCTTT 58.757 45.455 0.00 0.00 0.00 2.52
3968 4091 2.603473 TGGCCGACAGGTGCTACT 60.603 61.111 0.00 0.00 40.50 2.57
4012 4135 1.167851 CGGCTTCTTCTTGCATGGAA 58.832 50.000 0.00 0.00 0.00 3.53
4024 4147 0.614979 TAGGAGGTGAAGCGGCTTCT 60.615 55.000 34.78 20.57 40.73 2.85
4043 4166 2.119495 ACAGTGTTGGAAGACAGAGGT 58.881 47.619 0.00 0.00 0.00 3.85
4057 4180 4.154195 GGAGCATCGTTTATTGAACAGTGT 59.846 41.667 0.00 0.00 38.18 3.55
4066 4189 2.771943 TCTCCTGGGAGCATCGTTTATT 59.228 45.455 11.51 0.00 41.71 1.40
4068 4191 1.757118 CTCTCCTGGGAGCATCGTTTA 59.243 52.381 11.51 0.00 41.71 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.