Multiple sequence alignment - TraesCS2B01G241000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G241000 chr2B 100.000 3011 0 0 1 3011 245005013 245008023 0.000000e+00 5561
1 TraesCS2B01G241000 chr2B 98.918 832 9 0 16 847 177552502 177551671 0.000000e+00 1487
2 TraesCS2B01G241000 chr2B 95.597 318 11 2 2362 2676 767908484 767908167 9.630000e-140 507
3 TraesCS2B01G241000 chr2B 75.754 895 179 31 1030 1902 511280042 511279164 1.670000e-112 416
4 TraesCS2B01G241000 chr2B 72.359 814 170 47 1037 1820 39158944 39158156 3.930000e-49 206
5 TraesCS2B01G241000 chr2B 78.549 317 49 17 1495 1803 39090554 39090249 1.100000e-44 191
6 TraesCS2B01G241000 chr2A 93.973 1543 47 8 845 2355 203001880 203003408 0.000000e+00 2292
7 TraesCS2B01G241000 chr2A 79.204 452 82 10 1457 1902 553483549 553483994 1.360000e-78 303
8 TraesCS2B01G241000 chr2A 94.152 171 5 3 2846 3011 203003586 203003756 3.850000e-64 255
9 TraesCS2B01G241000 chr2D 95.152 1217 41 6 845 2052 188881705 188882912 0.000000e+00 1905
10 TraesCS2B01G241000 chr2D 96.934 848 20 2 2 848 99171313 99170471 0.000000e+00 1417
11 TraesCS2B01G241000 chr2D 75.812 893 182 29 1030 1902 433510296 433509418 3.590000e-114 422
12 TraesCS2B01G241000 chr2D 91.346 312 19 5 2704 3011 188883209 188883516 1.290000e-113 420
13 TraesCS2B01G241000 chr2D 78.385 421 71 17 1495 1902 22796228 22796641 3.850000e-64 255
14 TraesCS2B01G241000 chr2D 73.243 811 169 45 1033 1820 22785795 22786580 4.980000e-63 252
15 TraesCS2B01G241000 chr7B 97.160 845 23 1 2 846 730606343 730605500 0.000000e+00 1426
16 TraesCS2B01G241000 chr7B 97.041 845 24 1 2 846 730543374 730542531 0.000000e+00 1421
17 TraesCS2B01G241000 chr4B 97.055 849 21 3 2 849 9996320 9995475 0.000000e+00 1426
18 TraesCS2B01G241000 chr4B 96.541 318 9 1 2362 2677 323790100 323789783 2.660000e-145 525
19 TraesCS2B01G241000 chr5B 96.923 845 25 1 2 846 588671406 588670563 0.000000e+00 1415
20 TraesCS2B01G241000 chr1D 96.809 846 26 1 2 846 317791723 317792568 0.000000e+00 1411
21 TraesCS2B01G241000 chr4A 96.690 846 27 1 2 846 284640578 284641423 0.000000e+00 1406
22 TraesCS2B01G241000 chr7A 96.235 850 31 1 2 850 276921204 276922053 0.000000e+00 1391
23 TraesCS2B01G241000 chr7A 92.500 320 21 2 2362 2678 580501792 580502111 3.540000e-124 455
24 TraesCS2B01G241000 chr1B 96.226 318 9 2 2362 2676 15435262 15434945 4.450000e-143 518
25 TraesCS2B01G241000 chr1B 95.046 323 14 1 2358 2678 458050921 458051243 9.630000e-140 507
26 TraesCS2B01G241000 chrUn 95.356 323 12 2 2358 2677 158063540 158063862 7.450000e-141 510
27 TraesCS2B01G241000 chrUn 93.291 313 18 2 2367 2677 41431097 41431408 2.740000e-125 459
28 TraesCS2B01G241000 chrUn 93.291 313 18 2 2367 2677 330746546 330746857 2.740000e-125 459
29 TraesCS2B01G241000 chr3B 95.046 323 13 2 2358 2677 825003957 825004279 3.460000e-139 505


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G241000 chr2B 245005013 245008023 3010 False 5561.0 5561 100.0000 1 3011 1 chr2B.!!$F1 3010
1 TraesCS2B01G241000 chr2B 177551671 177552502 831 True 1487.0 1487 98.9180 16 847 1 chr2B.!!$R3 831
2 TraesCS2B01G241000 chr2B 511279164 511280042 878 True 416.0 416 75.7540 1030 1902 1 chr2B.!!$R4 872
3 TraesCS2B01G241000 chr2B 39158156 39158944 788 True 206.0 206 72.3590 1037 1820 1 chr2B.!!$R2 783
4 TraesCS2B01G241000 chr2A 203001880 203003756 1876 False 1273.5 2292 94.0625 845 3011 2 chr2A.!!$F2 2166
5 TraesCS2B01G241000 chr2D 99170471 99171313 842 True 1417.0 1417 96.9340 2 848 1 chr2D.!!$R1 846
6 TraesCS2B01G241000 chr2D 188881705 188883516 1811 False 1162.5 1905 93.2490 845 3011 2 chr2D.!!$F3 2166
7 TraesCS2B01G241000 chr2D 433509418 433510296 878 True 422.0 422 75.8120 1030 1902 1 chr2D.!!$R2 872
8 TraesCS2B01G241000 chr2D 22785795 22786580 785 False 252.0 252 73.2430 1033 1820 1 chr2D.!!$F1 787
9 TraesCS2B01G241000 chr7B 730605500 730606343 843 True 1426.0 1426 97.1600 2 846 1 chr7B.!!$R2 844
10 TraesCS2B01G241000 chr7B 730542531 730543374 843 True 1421.0 1421 97.0410 2 846 1 chr7B.!!$R1 844
11 TraesCS2B01G241000 chr4B 9995475 9996320 845 True 1426.0 1426 97.0550 2 849 1 chr4B.!!$R1 847
12 TraesCS2B01G241000 chr5B 588670563 588671406 843 True 1415.0 1415 96.9230 2 846 1 chr5B.!!$R1 844
13 TraesCS2B01G241000 chr1D 317791723 317792568 845 False 1411.0 1411 96.8090 2 846 1 chr1D.!!$F1 844
14 TraesCS2B01G241000 chr4A 284640578 284641423 845 False 1406.0 1406 96.6900 2 846 1 chr4A.!!$F1 844
15 TraesCS2B01G241000 chr7A 276921204 276922053 849 False 1391.0 1391 96.2350 2 850 1 chr7A.!!$F1 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 977 0.179078 CCAGATCTCAGCAGGTCAGC 60.179 60.0 0.0 0.0 31.17 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2722 2908 0.032952 TTCCTCCACTGAAACGACGG 59.967 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 6.909909 TGCATTCAATATCTGATGCTTGATC 58.090 36.000 14.35 9.62 38.42 2.92
276 279 4.929808 CGAACTACTTAATTGTCCACAGCT 59.070 41.667 0.00 0.00 0.00 4.24
584 587 6.502136 AACTTTAAAATGCCACTCTCTAGC 57.498 37.500 0.00 0.00 0.00 3.42
852 862 3.139077 CCGTTTACATCCCTAAGCATCC 58.861 50.000 0.00 0.00 0.00 3.51
963 974 1.070445 CCATCCAGATCTCAGCAGGTC 59.930 57.143 0.00 0.00 0.00 3.85
964 975 1.761198 CATCCAGATCTCAGCAGGTCA 59.239 52.381 0.00 0.00 31.17 4.02
965 976 1.482954 TCCAGATCTCAGCAGGTCAG 58.517 55.000 0.00 0.00 31.17 3.51
966 977 0.179078 CCAGATCTCAGCAGGTCAGC 60.179 60.000 0.00 0.00 31.17 4.26
967 978 0.535797 CAGATCTCAGCAGGTCAGCA 59.464 55.000 0.00 0.00 31.17 4.41
968 979 0.825410 AGATCTCAGCAGGTCAGCAG 59.175 55.000 0.00 0.00 31.17 4.24
969 980 0.179078 GATCTCAGCAGGTCAGCAGG 60.179 60.000 0.00 0.00 36.85 4.85
970 981 0.908656 ATCTCAGCAGGTCAGCAGGT 60.909 55.000 0.00 0.00 36.85 4.00
1221 1235 2.331132 GCTCTGCGGCTTCAAGCTT 61.331 57.895 9.83 0.00 41.99 3.74
1566 1589 3.885521 CCGTACCTCGCCTCGTCC 61.886 72.222 0.00 0.00 38.35 4.79
2026 2058 3.723831 ACCTGATGGTGTACCTCACGAC 61.724 54.545 2.32 0.00 46.51 4.34
2214 2269 4.155063 TGGTCATGGGATTGTCATGTAG 57.845 45.455 0.00 0.00 41.79 2.74
2215 2270 3.117926 TGGTCATGGGATTGTCATGTAGG 60.118 47.826 0.00 0.00 41.79 3.18
2216 2271 3.136443 GGTCATGGGATTGTCATGTAGGA 59.864 47.826 0.00 0.00 41.79 2.94
2217 2272 4.384056 GTCATGGGATTGTCATGTAGGAG 58.616 47.826 0.00 0.00 41.79 3.69
2218 2273 4.040047 TCATGGGATTGTCATGTAGGAGT 58.960 43.478 0.00 0.00 41.79 3.85
2219 2274 5.070446 GTCATGGGATTGTCATGTAGGAGTA 59.930 44.000 0.00 0.00 41.79 2.59
2239 2294 1.229428 CTAGTGGTTGCTGTGGTGTG 58.771 55.000 0.00 0.00 0.00 3.82
2243 2298 2.024588 GTTGCTGTGGTGTGCACG 59.975 61.111 13.13 0.00 39.05 5.34
2355 2416 4.621087 AGGGGTGCAAAGGCCCAC 62.621 66.667 11.93 0.00 46.59 4.61
2370 2431 3.077907 CACCGGTGGGAAGTGGAT 58.922 61.111 27.57 0.00 36.97 3.41
2371 2432 1.078426 CACCGGTGGGAAGTGGATC 60.078 63.158 27.57 0.00 36.97 3.36
2372 2433 2.298661 ACCGGTGGGAAGTGGATCC 61.299 63.158 6.12 4.20 38.86 3.36
2373 2434 1.995626 CCGGTGGGAAGTGGATCCT 60.996 63.158 14.23 0.00 39.57 3.24
2374 2435 1.522569 CGGTGGGAAGTGGATCCTC 59.477 63.158 14.23 9.81 39.57 3.71
2375 2436 0.978146 CGGTGGGAAGTGGATCCTCT 60.978 60.000 14.23 12.34 39.57 3.69
2376 2437 1.688311 CGGTGGGAAGTGGATCCTCTA 60.688 57.143 16.52 0.00 39.57 2.43
2377 2438 2.478292 GGTGGGAAGTGGATCCTCTAA 58.522 52.381 16.52 1.19 39.57 2.10
2378 2439 2.170817 GGTGGGAAGTGGATCCTCTAAC 59.829 54.545 16.52 13.01 39.57 2.34
2379 2440 2.838202 GTGGGAAGTGGATCCTCTAACA 59.162 50.000 16.52 12.47 39.57 2.41
2380 2441 3.456277 GTGGGAAGTGGATCCTCTAACAT 59.544 47.826 16.52 1.06 39.57 2.71
2381 2442 3.711704 TGGGAAGTGGATCCTCTAACATC 59.288 47.826 16.52 10.16 39.57 3.06
2382 2443 3.071747 GGGAAGTGGATCCTCTAACATCC 59.928 52.174 16.52 17.56 39.57 3.51
2383 2444 3.711704 GGAAGTGGATCCTCTAACATCCA 59.288 47.826 20.35 0.00 45.32 3.41
2387 2448 3.048600 TGGATCCTCTAACATCCAAGGG 58.951 50.000 14.23 0.00 44.68 3.95
2388 2449 3.311327 TGGATCCTCTAACATCCAAGGGA 60.311 47.826 14.23 0.00 44.68 4.20
2389 2450 3.913163 GGATCCTCTAACATCCAAGGGAT 59.087 47.826 3.84 0.00 44.21 3.85
2398 2459 2.698855 ATCCAAGGGATGTCACGAAG 57.301 50.000 0.00 0.00 41.43 3.79
2399 2460 0.036388 TCCAAGGGATGTCACGAAGC 60.036 55.000 0.00 0.00 0.00 3.86
2400 2461 0.036010 CCAAGGGATGTCACGAAGCT 60.036 55.000 0.00 0.00 0.00 3.74
2401 2462 1.207089 CCAAGGGATGTCACGAAGCTA 59.793 52.381 0.00 0.00 0.00 3.32
2402 2463 2.271800 CAAGGGATGTCACGAAGCTAC 58.728 52.381 0.00 0.00 0.00 3.58
2403 2464 1.557099 AGGGATGTCACGAAGCTACA 58.443 50.000 0.00 0.00 0.00 2.74
2404 2465 1.478510 AGGGATGTCACGAAGCTACAG 59.521 52.381 0.00 0.00 0.00 2.74
2405 2466 1.204941 GGGATGTCACGAAGCTACAGT 59.795 52.381 0.00 0.00 0.00 3.55
2406 2467 2.426024 GGGATGTCACGAAGCTACAGTA 59.574 50.000 0.00 0.00 0.00 2.74
2407 2468 3.119245 GGGATGTCACGAAGCTACAGTAA 60.119 47.826 0.00 0.00 0.00 2.24
2408 2469 4.491676 GGATGTCACGAAGCTACAGTAAA 58.508 43.478 0.00 0.00 0.00 2.01
2409 2470 4.927425 GGATGTCACGAAGCTACAGTAAAA 59.073 41.667 0.00 0.00 0.00 1.52
2410 2471 5.581085 GGATGTCACGAAGCTACAGTAAAAT 59.419 40.000 0.00 0.00 0.00 1.82
2411 2472 5.839262 TGTCACGAAGCTACAGTAAAATG 57.161 39.130 0.00 0.00 0.00 2.32
2412 2473 4.151689 TGTCACGAAGCTACAGTAAAATGC 59.848 41.667 0.00 0.00 0.00 3.56
2413 2474 4.151689 GTCACGAAGCTACAGTAAAATGCA 59.848 41.667 0.00 0.00 0.00 3.96
2414 2475 4.935205 TCACGAAGCTACAGTAAAATGCAT 59.065 37.500 0.00 0.00 0.00 3.96
2415 2476 5.023920 CACGAAGCTACAGTAAAATGCATG 58.976 41.667 0.00 0.00 0.00 4.06
2416 2477 4.695455 ACGAAGCTACAGTAAAATGCATGT 59.305 37.500 0.00 0.00 0.00 3.21
2417 2478 5.023920 CGAAGCTACAGTAAAATGCATGTG 58.976 41.667 0.00 0.00 0.00 3.21
2418 2479 5.390885 CGAAGCTACAGTAAAATGCATGTGT 60.391 40.000 0.00 2.14 0.00 3.72
2419 2480 5.300969 AGCTACAGTAAAATGCATGTGTG 57.699 39.130 0.00 0.00 0.00 3.82
2420 2481 5.003160 AGCTACAGTAAAATGCATGTGTGA 58.997 37.500 0.00 0.00 0.00 3.58
2421 2482 5.473162 AGCTACAGTAAAATGCATGTGTGAA 59.527 36.000 0.00 0.00 0.00 3.18
2422 2483 6.016360 AGCTACAGTAAAATGCATGTGTGAAA 60.016 34.615 0.00 0.00 0.00 2.69
2423 2484 6.088085 GCTACAGTAAAATGCATGTGTGAAAC 59.912 38.462 0.00 0.00 37.35 2.78
2424 2485 4.975502 ACAGTAAAATGCATGTGTGAAACG 59.024 37.500 0.00 0.00 42.39 3.60
2425 2486 5.211454 CAGTAAAATGCATGTGTGAAACGA 58.789 37.500 0.00 0.00 42.39 3.85
2426 2487 5.685068 CAGTAAAATGCATGTGTGAAACGAA 59.315 36.000 0.00 0.00 42.39 3.85
2427 2488 5.914635 AGTAAAATGCATGTGTGAAACGAAG 59.085 36.000 0.00 0.00 42.39 3.79
2428 2489 4.566545 AAATGCATGTGTGAAACGAAGA 57.433 36.364 0.00 0.00 42.39 2.87
2429 2490 4.566545 AATGCATGTGTGAAACGAAGAA 57.433 36.364 0.00 0.00 42.39 2.52
2430 2491 3.607422 TGCATGTGTGAAACGAAGAAG 57.393 42.857 0.00 0.00 42.39 2.85
2431 2492 2.290367 TGCATGTGTGAAACGAAGAAGG 59.710 45.455 0.00 0.00 42.39 3.46
2432 2493 2.350772 GCATGTGTGAAACGAAGAAGGG 60.351 50.000 0.00 0.00 42.39 3.95
2433 2494 2.992124 TGTGTGAAACGAAGAAGGGA 57.008 45.000 0.00 0.00 42.39 4.20
2434 2495 3.485463 TGTGTGAAACGAAGAAGGGAT 57.515 42.857 0.00 0.00 42.39 3.85
2435 2496 3.138304 TGTGTGAAACGAAGAAGGGATG 58.862 45.455 0.00 0.00 42.39 3.51
2436 2497 3.139077 GTGTGAAACGAAGAAGGGATGT 58.861 45.455 0.00 0.00 42.39 3.06
2437 2498 3.186613 GTGTGAAACGAAGAAGGGATGTC 59.813 47.826 0.00 0.00 42.39 3.06
2438 2499 3.181459 TGTGAAACGAAGAAGGGATGTCA 60.181 43.478 0.00 0.00 42.39 3.58
2439 2500 3.433615 GTGAAACGAAGAAGGGATGTCAG 59.566 47.826 0.00 0.00 0.00 3.51
2440 2501 2.770164 AACGAAGAAGGGATGTCAGG 57.230 50.000 0.00 0.00 0.00 3.86
2441 2502 0.905357 ACGAAGAAGGGATGTCAGGG 59.095 55.000 0.00 0.00 0.00 4.45
2442 2503 0.905357 CGAAGAAGGGATGTCAGGGT 59.095 55.000 0.00 0.00 0.00 4.34
2443 2504 1.279271 CGAAGAAGGGATGTCAGGGTT 59.721 52.381 0.00 0.00 0.00 4.11
2444 2505 2.500098 CGAAGAAGGGATGTCAGGGTTA 59.500 50.000 0.00 0.00 0.00 2.85
2445 2506 3.679083 CGAAGAAGGGATGTCAGGGTTAC 60.679 52.174 0.00 0.00 0.00 2.50
2446 2507 3.207044 AGAAGGGATGTCAGGGTTACT 57.793 47.619 0.00 0.00 0.00 2.24
2456 2517 2.851263 CAGGGTTACTGTAGCAACCA 57.149 50.000 14.30 0.00 45.03 3.67
2457 2518 2.423577 CAGGGTTACTGTAGCAACCAC 58.576 52.381 14.30 5.69 45.03 4.16
2458 2519 2.038557 CAGGGTTACTGTAGCAACCACT 59.961 50.000 14.30 7.47 45.03 4.00
2459 2520 3.259876 CAGGGTTACTGTAGCAACCACTA 59.740 47.826 14.30 0.00 45.03 2.74
2460 2521 4.081087 CAGGGTTACTGTAGCAACCACTAT 60.081 45.833 14.30 0.00 45.03 2.12
2461 2522 4.081087 AGGGTTACTGTAGCAACCACTATG 60.081 45.833 14.30 0.00 45.03 2.23
2462 2523 3.621715 GGTTACTGTAGCAACCACTATGC 59.378 47.826 8.77 0.00 43.13 3.14
2470 2531 3.334272 GCAACCACTATGCGGATTTAC 57.666 47.619 0.00 0.00 33.57 2.01
2471 2532 2.943033 GCAACCACTATGCGGATTTACT 59.057 45.455 0.00 0.00 33.57 2.24
2472 2533 3.242739 GCAACCACTATGCGGATTTACTG 60.243 47.826 0.00 0.00 33.57 2.74
2473 2534 3.906720 ACCACTATGCGGATTTACTGT 57.093 42.857 0.00 0.00 0.00 3.55
2474 2535 5.113383 CAACCACTATGCGGATTTACTGTA 58.887 41.667 0.00 0.00 0.00 2.74
2475 2536 4.945246 ACCACTATGCGGATTTACTGTAG 58.055 43.478 0.00 0.00 0.00 2.74
2476 2537 3.741344 CCACTATGCGGATTTACTGTAGC 59.259 47.826 0.00 0.00 0.00 3.58
2477 2538 4.368315 CACTATGCGGATTTACTGTAGCA 58.632 43.478 0.00 1.86 39.02 3.49
2478 2539 4.991056 CACTATGCGGATTTACTGTAGCAT 59.009 41.667 13.67 13.67 45.65 3.79
2479 2540 6.156519 CACTATGCGGATTTACTGTAGCATA 58.843 40.000 14.25 14.25 43.79 3.14
2480 2541 6.813649 CACTATGCGGATTTACTGTAGCATAT 59.186 38.462 14.96 6.94 43.63 1.78
2481 2542 7.973944 CACTATGCGGATTTACTGTAGCATATA 59.026 37.037 14.96 2.11 43.63 0.86
2482 2543 7.974501 ACTATGCGGATTTACTGTAGCATATAC 59.025 37.037 14.96 0.00 43.63 1.47
2483 2544 6.091718 TGCGGATTTACTGTAGCATATACA 57.908 37.500 0.00 0.00 0.00 2.29
2484 2545 6.517605 TGCGGATTTACTGTAGCATATACAA 58.482 36.000 0.00 0.00 0.00 2.41
2485 2546 6.987404 TGCGGATTTACTGTAGCATATACAAA 59.013 34.615 0.00 0.00 0.00 2.83
2486 2547 7.496263 TGCGGATTTACTGTAGCATATACAAAA 59.504 33.333 0.00 0.00 0.00 2.44
2487 2548 8.339714 GCGGATTTACTGTAGCATATACAAAAA 58.660 33.333 0.00 0.00 0.00 1.94
2614 2675 7.520798 AGGCTTAATCATATGAATGTGAAGGA 58.479 34.615 9.99 0.00 34.50 3.36
2615 2676 7.664731 AGGCTTAATCATATGAATGTGAAGGAG 59.335 37.037 9.99 0.05 34.50 3.69
2616 2677 7.094463 GGCTTAATCATATGAATGTGAAGGAGG 60.094 40.741 9.99 0.00 34.50 4.30
2617 2678 7.094463 GCTTAATCATATGAATGTGAAGGAGGG 60.094 40.741 9.99 0.00 34.50 4.30
2619 2680 6.715350 ATCATATGAATGTGAAGGAGGGAT 57.285 37.500 9.99 0.00 34.50 3.85
2620 2681 5.872963 TCATATGAATGTGAAGGAGGGATG 58.127 41.667 1.98 0.00 34.50 3.51
2622 2683 3.634397 TGAATGTGAAGGAGGGATGTC 57.366 47.619 0.00 0.00 0.00 3.06
2623 2684 2.912295 TGAATGTGAAGGAGGGATGTCA 59.088 45.455 0.00 0.00 0.00 3.58
2624 2685 3.274288 GAATGTGAAGGAGGGATGTCAC 58.726 50.000 0.00 0.00 40.64 3.67
2625 2686 1.728323 TGTGAAGGAGGGATGTCACA 58.272 50.000 1.37 1.37 46.04 3.58
2626 2687 2.269023 TGTGAAGGAGGGATGTCACAT 58.731 47.619 0.00 0.00 44.02 3.21
2627 2688 2.644299 TGTGAAGGAGGGATGTCACATT 59.356 45.455 0.00 0.00 44.02 2.71
2628 2689 3.074390 TGTGAAGGAGGGATGTCACATTT 59.926 43.478 0.00 0.00 44.02 2.32
2629 2690 4.288366 TGTGAAGGAGGGATGTCACATTTA 59.712 41.667 0.00 0.00 44.02 1.40
2630 2691 4.636206 GTGAAGGAGGGATGTCACATTTAC 59.364 45.833 0.00 0.00 40.10 2.01
2631 2692 4.536090 TGAAGGAGGGATGTCACATTTACT 59.464 41.667 0.00 0.00 0.00 2.24
2632 2693 4.494091 AGGAGGGATGTCACATTTACTG 57.506 45.455 0.00 0.00 0.00 2.74
2633 2694 3.846588 AGGAGGGATGTCACATTTACTGT 59.153 43.478 0.00 0.00 39.20 3.55
2634 2695 5.030147 AGGAGGGATGTCACATTTACTGTA 58.970 41.667 0.00 0.00 35.91 2.74
2635 2696 5.129485 AGGAGGGATGTCACATTTACTGTAG 59.871 44.000 0.00 0.00 35.91 2.74
2636 2697 4.770795 AGGGATGTCACATTTACTGTAGC 58.229 43.478 0.00 0.00 35.91 3.58
2639 2700 6.156256 AGGGATGTCACATTTACTGTAGCTTA 59.844 38.462 0.00 0.00 35.91 3.09
2640 2701 6.258068 GGGATGTCACATTTACTGTAGCTTAC 59.742 42.308 0.00 0.00 35.91 2.34
2641 2702 6.019801 GGATGTCACATTTACTGTAGCTTACG 60.020 42.308 0.00 0.00 35.91 3.18
2643 2704 5.631929 TGTCACATTTACTGTAGCTTACGTG 59.368 40.000 0.00 0.00 35.91 4.49
2644 2705 5.860182 GTCACATTTACTGTAGCTTACGTGA 59.140 40.000 0.00 0.00 35.91 4.35
2646 2707 5.631929 CACATTTACTGTAGCTTACGTGACA 59.368 40.000 0.00 0.00 35.91 3.58
2647 2708 6.310467 CACATTTACTGTAGCTTACGTGACAT 59.690 38.462 0.00 0.00 35.91 3.06
2648 2709 6.530534 ACATTTACTGTAGCTTACGTGACATC 59.469 38.462 0.00 0.00 35.91 3.06
2649 2710 3.505464 ACTGTAGCTTACGTGACATCC 57.495 47.619 0.00 0.00 0.00 3.51
2651 2712 2.427453 CTGTAGCTTACGTGACATCCCT 59.573 50.000 0.00 0.00 0.00 4.20
2653 2714 2.386661 AGCTTACGTGACATCCCTTG 57.613 50.000 0.00 0.00 0.00 3.61
2654 2715 1.899814 AGCTTACGTGACATCCCTTGA 59.100 47.619 0.00 0.00 0.00 3.02
2656 2717 2.893637 CTTACGTGACATCCCTTGAGG 58.106 52.381 0.00 0.00 0.00 3.86
2667 2728 3.776731 TCCCTTGAGGATGTTAGAGGA 57.223 47.619 0.00 0.00 40.93 3.71
2668 2729 4.286813 TCCCTTGAGGATGTTAGAGGAT 57.713 45.455 0.00 0.00 40.93 3.24
2669 2730 4.227197 TCCCTTGAGGATGTTAGAGGATC 58.773 47.826 0.00 0.00 40.93 3.36
2670 2731 3.326297 CCCTTGAGGATGTTAGAGGATCC 59.674 52.174 2.48 2.48 38.83 3.36
2674 2735 4.030913 TGAGGATGTTAGAGGATCCGTTT 58.969 43.478 5.98 0.00 42.73 3.60
2675 2736 4.099573 TGAGGATGTTAGAGGATCCGTTTC 59.900 45.833 5.98 0.00 42.73 2.78
2676 2737 3.388350 AGGATGTTAGAGGATCCGTTTCC 59.612 47.826 5.98 7.36 42.73 3.13
2677 2738 3.494573 GGATGTTAGAGGATCCGTTTCCC 60.495 52.174 5.98 0.00 36.35 3.97
2678 2739 2.542550 TGTTAGAGGATCCGTTTCCCA 58.457 47.619 5.98 0.00 36.35 4.37
2679 2740 2.235402 TGTTAGAGGATCCGTTTCCCAC 59.765 50.000 5.98 0.00 36.35 4.61
2680 2741 1.492764 TAGAGGATCCGTTTCCCACC 58.507 55.000 5.98 0.00 36.35 4.61
2681 2742 1.153429 GAGGATCCGTTTCCCACCG 60.153 63.158 5.98 0.00 36.35 4.94
2727 2913 6.165659 AGAACTCATTAAAATTGACCGTCG 57.834 37.500 0.00 0.00 0.00 5.12
2745 2931 4.181578 CGTCGTTTCAGTGGAGGAAATAT 58.818 43.478 0.00 0.00 36.71 1.28
2758 2944 8.201464 AGTGGAGGAAATATTTTCGTTTTTGTT 58.799 29.630 1.43 0.00 0.00 2.83
2775 2961 3.256824 TTGCCGTAGTTTCCCCCGG 62.257 63.158 0.00 0.00 43.22 5.73
2819 3009 7.197017 CGTAGTTTGACTATTGAGCTGTATCT 58.803 38.462 0.00 0.00 32.65 1.98
2820 3010 8.343366 CGTAGTTTGACTATTGAGCTGTATCTA 58.657 37.037 0.00 0.00 32.65 1.98
2887 3079 7.099120 AGGCTTTAACTGAATTTTAGCAATGG 58.901 34.615 0.00 0.00 30.80 3.16
2998 3193 4.210331 GCTATTTGGACATCATTGGAGGT 58.790 43.478 0.00 0.00 41.47 3.85
3004 3199 2.762327 GGACATCATTGGAGGTTTGCAT 59.238 45.455 0.00 0.00 38.33 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 9.866936 GTACGTGTATATAGTGAGAAGAGAAAG 57.133 37.037 0.00 0.00 0.00 2.62
346 349 1.307309 CAATCCACTGGCATCCCCA 59.693 57.895 0.00 0.00 42.79 4.96
349 352 1.064463 TCTTCCAATCCACTGGCATCC 60.064 52.381 0.00 0.00 36.32 3.51
584 587 4.964969 ATGTTTTCATCCAAGCGCATAACG 60.965 41.667 11.47 0.00 39.79 3.18
680 683 1.447140 CGGAGCAAATTCGGACCGA 60.447 57.895 13.88 13.88 42.40 4.69
814 819 0.532573 CGGATCGGATCGGATTGGAT 59.467 55.000 17.77 4.90 0.00 3.41
815 820 0.826256 ACGGATCGGATCGGATTGGA 60.826 55.000 26.28 0.00 34.17 3.53
816 821 0.033504 AACGGATCGGATCGGATTGG 59.966 55.000 26.28 13.05 34.17 3.16
817 822 1.865865 AAACGGATCGGATCGGATTG 58.134 50.000 26.28 13.81 34.17 2.67
818 823 2.363038 TGTAAACGGATCGGATCGGATT 59.637 45.455 26.28 22.68 34.17 3.01
852 862 2.051345 GCGAACGCTTTGGTGTGG 60.051 61.111 11.97 0.00 36.20 4.17
997 1008 3.144120 CTAGCTCGGACGCCATGCT 62.144 63.158 13.65 13.65 36.18 3.79
999 1010 2.659897 GCTAGCTCGGACGCCATG 60.660 66.667 7.70 0.00 0.00 3.66
1344 1361 1.258445 CGTAGGACAGCAGGAACCCT 61.258 60.000 0.00 0.00 0.00 4.34
1452 1475 1.153842 CATCAGGTAGACGTGCGCA 60.154 57.895 5.66 5.66 0.00 6.09
1461 1484 1.317613 AGAGCTCGAGCATCAGGTAG 58.682 55.000 36.87 0.00 45.16 3.18
1528 1551 2.357034 GTCGAACTGCGGCTCCAA 60.357 61.111 0.00 0.00 42.46 3.53
1566 1589 4.148825 CCCCAGAAGTCGCGGAGG 62.149 72.222 6.13 0.00 0.00 4.30
1950 1976 2.361992 TCCAGCAAGGCCAGCATG 60.362 61.111 20.51 14.83 37.29 4.06
2073 2112 3.328382 AACCAAACTCGATCGGAATCA 57.672 42.857 16.41 0.00 31.76 2.57
2151 2206 3.607641 CGCGAGATGAGATTCTAATCTGC 59.392 47.826 16.95 17.14 45.39 4.26
2214 2269 2.353803 CCACAGCAACCACTAGTACTCC 60.354 54.545 0.00 0.00 0.00 3.85
2215 2270 2.299297 ACCACAGCAACCACTAGTACTC 59.701 50.000 0.00 0.00 0.00 2.59
2216 2271 2.037251 CACCACAGCAACCACTAGTACT 59.963 50.000 0.00 0.00 0.00 2.73
2217 2272 2.224209 ACACCACAGCAACCACTAGTAC 60.224 50.000 0.00 0.00 0.00 2.73
2218 2273 2.043992 ACACCACAGCAACCACTAGTA 58.956 47.619 0.00 0.00 0.00 1.82
2219 2274 0.837272 ACACCACAGCAACCACTAGT 59.163 50.000 0.00 0.00 0.00 2.57
2243 2298 2.568935 GATGCTCTCGTTTGTGCGGC 62.569 60.000 0.00 0.00 0.00 6.53
2255 2315 0.694771 TTCTTGCCCTGTGATGCTCT 59.305 50.000 0.00 0.00 0.00 4.09
2303 2363 4.724279 AGGGGAAACGATAATATGCCTT 57.276 40.909 0.00 0.00 0.00 4.35
2355 2416 1.972660 GAGGATCCACTTCCCACCGG 61.973 65.000 15.82 0.00 36.35 5.28
2358 2419 2.838202 TGTTAGAGGATCCACTTCCCAC 59.162 50.000 17.39 9.62 36.35 4.61
2360 2421 3.071747 GGATGTTAGAGGATCCACTTCCC 59.928 52.174 17.39 7.87 37.25 3.97
2361 2422 3.711704 TGGATGTTAGAGGATCCACTTCC 59.288 47.826 17.39 19.07 42.67 3.46
2362 2423 5.359194 TTGGATGTTAGAGGATCCACTTC 57.641 43.478 17.39 11.33 46.33 3.01
2363 2424 4.164988 CCTTGGATGTTAGAGGATCCACTT 59.835 45.833 17.39 2.56 46.33 3.16
2364 2425 3.713764 CCTTGGATGTTAGAGGATCCACT 59.286 47.826 16.41 16.41 46.33 4.00
2365 2426 3.181450 CCCTTGGATGTTAGAGGATCCAC 60.181 52.174 15.82 8.01 46.33 4.02
2366 2427 3.048600 CCCTTGGATGTTAGAGGATCCA 58.951 50.000 15.82 0.00 45.27 3.41
2367 2428 3.318313 TCCCTTGGATGTTAGAGGATCC 58.682 50.000 2.48 2.48 38.98 3.36
2379 2440 1.407437 GCTTCGTGACATCCCTTGGAT 60.407 52.381 0.00 0.00 44.21 3.41
2380 2441 0.036388 GCTTCGTGACATCCCTTGGA 60.036 55.000 0.00 0.00 35.55 3.53
2381 2442 0.036010 AGCTTCGTGACATCCCTTGG 60.036 55.000 0.00 0.00 0.00 3.61
2382 2443 2.271800 GTAGCTTCGTGACATCCCTTG 58.728 52.381 0.00 0.00 0.00 3.61
2383 2444 1.899814 TGTAGCTTCGTGACATCCCTT 59.100 47.619 0.00 0.00 0.00 3.95
2384 2445 1.478510 CTGTAGCTTCGTGACATCCCT 59.521 52.381 0.00 0.00 0.00 4.20
2385 2446 1.204941 ACTGTAGCTTCGTGACATCCC 59.795 52.381 0.00 0.00 0.00 3.85
2386 2447 2.656560 ACTGTAGCTTCGTGACATCC 57.343 50.000 0.00 0.00 0.00 3.51
2387 2448 6.470160 CATTTTACTGTAGCTTCGTGACATC 58.530 40.000 0.00 0.00 0.00 3.06
2388 2449 5.163854 GCATTTTACTGTAGCTTCGTGACAT 60.164 40.000 0.00 0.00 0.00 3.06
2389 2450 4.151689 GCATTTTACTGTAGCTTCGTGACA 59.848 41.667 0.00 0.00 0.00 3.58
2390 2451 4.151689 TGCATTTTACTGTAGCTTCGTGAC 59.848 41.667 0.00 0.00 0.00 3.67
2391 2452 4.311606 TGCATTTTACTGTAGCTTCGTGA 58.688 39.130 0.00 0.00 0.00 4.35
2392 2453 4.661993 TGCATTTTACTGTAGCTTCGTG 57.338 40.909 0.00 0.00 0.00 4.35
2393 2454 4.695455 ACATGCATTTTACTGTAGCTTCGT 59.305 37.500 0.00 0.00 0.00 3.85
2394 2455 5.023920 CACATGCATTTTACTGTAGCTTCG 58.976 41.667 0.00 0.00 0.00 3.79
2395 2456 5.796935 CACACATGCATTTTACTGTAGCTTC 59.203 40.000 0.00 0.00 0.00 3.86
2396 2457 5.473162 TCACACATGCATTTTACTGTAGCTT 59.527 36.000 0.00 0.00 0.00 3.74
2397 2458 5.003160 TCACACATGCATTTTACTGTAGCT 58.997 37.500 0.00 0.00 0.00 3.32
2398 2459 5.295431 TCACACATGCATTTTACTGTAGC 57.705 39.130 0.00 0.00 0.00 3.58
2399 2460 6.303022 CGTTTCACACATGCATTTTACTGTAG 59.697 38.462 0.00 0.00 0.00 2.74
2400 2461 6.017852 TCGTTTCACACATGCATTTTACTGTA 60.018 34.615 0.00 0.00 0.00 2.74
2401 2462 4.975502 CGTTTCACACATGCATTTTACTGT 59.024 37.500 0.00 0.00 0.00 3.55
2402 2463 5.211454 TCGTTTCACACATGCATTTTACTG 58.789 37.500 0.00 0.00 0.00 2.74
2403 2464 5.431420 TCGTTTCACACATGCATTTTACT 57.569 34.783 0.00 0.00 0.00 2.24
2404 2465 5.912396 TCTTCGTTTCACACATGCATTTTAC 59.088 36.000 0.00 0.00 0.00 2.01
2405 2466 6.066054 TCTTCGTTTCACACATGCATTTTA 57.934 33.333 0.00 0.00 0.00 1.52
2406 2467 4.930963 TCTTCGTTTCACACATGCATTTT 58.069 34.783 0.00 0.00 0.00 1.82
2407 2468 4.566545 TCTTCGTTTCACACATGCATTT 57.433 36.364 0.00 0.00 0.00 2.32
2408 2469 4.539870 CTTCTTCGTTTCACACATGCATT 58.460 39.130 0.00 0.00 0.00 3.56
2409 2470 3.058016 CCTTCTTCGTTTCACACATGCAT 60.058 43.478 0.00 0.00 0.00 3.96
2410 2471 2.290367 CCTTCTTCGTTTCACACATGCA 59.710 45.455 0.00 0.00 0.00 3.96
2411 2472 2.350772 CCCTTCTTCGTTTCACACATGC 60.351 50.000 0.00 0.00 0.00 4.06
2412 2473 3.138304 TCCCTTCTTCGTTTCACACATG 58.862 45.455 0.00 0.00 0.00 3.21
2413 2474 3.485463 TCCCTTCTTCGTTTCACACAT 57.515 42.857 0.00 0.00 0.00 3.21
2414 2475 2.992124 TCCCTTCTTCGTTTCACACA 57.008 45.000 0.00 0.00 0.00 3.72
2415 2476 3.139077 ACATCCCTTCTTCGTTTCACAC 58.861 45.455 0.00 0.00 0.00 3.82
2416 2477 3.181459 TGACATCCCTTCTTCGTTTCACA 60.181 43.478 0.00 0.00 0.00 3.58
2417 2478 3.399330 TGACATCCCTTCTTCGTTTCAC 58.601 45.455 0.00 0.00 0.00 3.18
2418 2479 3.557054 CCTGACATCCCTTCTTCGTTTCA 60.557 47.826 0.00 0.00 0.00 2.69
2419 2480 3.003480 CCTGACATCCCTTCTTCGTTTC 58.997 50.000 0.00 0.00 0.00 2.78
2420 2481 2.290323 CCCTGACATCCCTTCTTCGTTT 60.290 50.000 0.00 0.00 0.00 3.60
2421 2482 1.279271 CCCTGACATCCCTTCTTCGTT 59.721 52.381 0.00 0.00 0.00 3.85
2422 2483 0.905357 CCCTGACATCCCTTCTTCGT 59.095 55.000 0.00 0.00 0.00 3.85
2423 2484 0.905357 ACCCTGACATCCCTTCTTCG 59.095 55.000 0.00 0.00 0.00 3.79
2424 2485 3.519913 AGTAACCCTGACATCCCTTCTTC 59.480 47.826 0.00 0.00 0.00 2.87
2425 2486 3.264450 CAGTAACCCTGACATCCCTTCTT 59.736 47.826 0.00 0.00 44.49 2.52
2426 2487 2.840651 CAGTAACCCTGACATCCCTTCT 59.159 50.000 0.00 0.00 44.49 2.85
2427 2488 2.572104 ACAGTAACCCTGACATCCCTTC 59.428 50.000 0.00 0.00 44.49 3.46
2428 2489 2.632537 ACAGTAACCCTGACATCCCTT 58.367 47.619 0.00 0.00 44.49 3.95
2429 2490 2.344093 ACAGTAACCCTGACATCCCT 57.656 50.000 0.00 0.00 44.49 4.20
2430 2491 2.158943 GCTACAGTAACCCTGACATCCC 60.159 54.545 0.00 0.00 44.49 3.85
2431 2492 2.500098 TGCTACAGTAACCCTGACATCC 59.500 50.000 0.00 0.00 44.49 3.51
2432 2493 3.887621 TGCTACAGTAACCCTGACATC 57.112 47.619 0.00 0.00 44.49 3.06
2433 2494 3.939066 GTTGCTACAGTAACCCTGACAT 58.061 45.455 0.00 0.00 44.49 3.06
2434 2495 3.396260 GTTGCTACAGTAACCCTGACA 57.604 47.619 0.00 0.00 44.49 3.58
2441 2502 3.306166 CGCATAGTGGTTGCTACAGTAAC 59.694 47.826 0.00 1.97 39.44 2.50
2442 2503 3.517602 CGCATAGTGGTTGCTACAGTAA 58.482 45.455 0.00 0.00 37.96 2.24
2443 2504 2.159156 CCGCATAGTGGTTGCTACAGTA 60.159 50.000 0.00 0.00 37.96 2.74
2444 2505 1.405526 CCGCATAGTGGTTGCTACAGT 60.406 52.381 0.00 0.00 37.96 3.55
2445 2506 1.134818 TCCGCATAGTGGTTGCTACAG 60.135 52.381 0.00 0.00 37.96 2.74
2446 2507 0.899019 TCCGCATAGTGGTTGCTACA 59.101 50.000 0.00 0.00 37.96 2.74
2447 2508 2.240493 ATCCGCATAGTGGTTGCTAC 57.760 50.000 0.00 0.00 37.96 3.58
2448 2509 3.275617 AAATCCGCATAGTGGTTGCTA 57.724 42.857 0.00 0.00 37.96 3.49
2449 2510 2.128771 AAATCCGCATAGTGGTTGCT 57.871 45.000 0.00 0.00 37.96 3.91
2450 2511 2.943033 AGTAAATCCGCATAGTGGTTGC 59.057 45.455 0.00 0.00 34.40 4.17
2451 2512 3.938963 ACAGTAAATCCGCATAGTGGTTG 59.061 43.478 0.00 0.00 34.40 3.77
2452 2513 4.216411 ACAGTAAATCCGCATAGTGGTT 57.784 40.909 0.00 0.00 34.40 3.67
2453 2514 3.906720 ACAGTAAATCCGCATAGTGGT 57.093 42.857 0.00 0.00 34.40 4.16
2454 2515 3.741344 GCTACAGTAAATCCGCATAGTGG 59.259 47.826 0.00 0.00 33.99 4.00
2455 2516 4.368315 TGCTACAGTAAATCCGCATAGTG 58.632 43.478 0.00 0.00 0.00 2.74
2456 2517 4.665833 TGCTACAGTAAATCCGCATAGT 57.334 40.909 0.00 0.00 0.00 2.12
2457 2518 7.973944 TGTATATGCTACAGTAAATCCGCATAG 59.026 37.037 13.81 0.00 41.74 2.23
2458 2519 7.832769 TGTATATGCTACAGTAAATCCGCATA 58.167 34.615 11.77 11.77 42.37 3.14
2459 2520 6.697395 TGTATATGCTACAGTAAATCCGCAT 58.303 36.000 8.76 8.76 40.70 4.73
2460 2521 6.091718 TGTATATGCTACAGTAAATCCGCA 57.908 37.500 0.00 0.00 0.00 5.69
2461 2522 7.416154 TTTGTATATGCTACAGTAAATCCGC 57.584 36.000 0.00 0.00 0.00 5.54
2588 2649 8.659527 TCCTTCACATTCATATGATTAAGCCTA 58.340 33.333 6.17 0.00 35.65 3.93
2589 2650 7.520798 TCCTTCACATTCATATGATTAAGCCT 58.479 34.615 6.17 0.00 35.65 4.58
2592 2653 8.159447 TCCCTCCTTCACATTCATATGATTAAG 58.841 37.037 6.17 4.31 35.65 1.85
2593 2654 8.044574 TCCCTCCTTCACATTCATATGATTAA 57.955 34.615 6.17 0.00 35.65 1.40
2594 2655 7.631510 TCCCTCCTTCACATTCATATGATTA 57.368 36.000 6.17 0.00 35.65 1.75
2595 2656 6.520021 TCCCTCCTTCACATTCATATGATT 57.480 37.500 6.17 0.00 35.65 2.57
2596 2657 6.045224 ACATCCCTCCTTCACATTCATATGAT 59.955 38.462 6.17 0.00 35.65 2.45
2597 2658 5.370584 ACATCCCTCCTTCACATTCATATGA 59.629 40.000 0.00 0.00 35.65 2.15
2598 2659 5.628130 ACATCCCTCCTTCACATTCATATG 58.372 41.667 0.00 0.00 37.79 1.78
2601 2662 3.524789 TGACATCCCTCCTTCACATTCAT 59.475 43.478 0.00 0.00 0.00 2.57
2602 2663 2.912295 TGACATCCCTCCTTCACATTCA 59.088 45.455 0.00 0.00 0.00 2.57
2603 2664 3.274288 GTGACATCCCTCCTTCACATTC 58.726 50.000 0.00 0.00 38.60 2.67
2604 2665 2.644299 TGTGACATCCCTCCTTCACATT 59.356 45.455 0.00 0.00 42.61 2.71
2606 2667 1.728323 TGTGACATCCCTCCTTCACA 58.272 50.000 0.00 0.00 44.68 3.58
2607 2668 3.356529 AATGTGACATCCCTCCTTCAC 57.643 47.619 0.00 0.00 39.09 3.18
2610 2671 4.289672 ACAGTAAATGTGACATCCCTCCTT 59.710 41.667 0.00 0.00 41.91 3.36
2614 2675 4.471386 AGCTACAGTAAATGTGACATCCCT 59.529 41.667 0.00 0.00 43.80 4.20
2615 2676 4.770795 AGCTACAGTAAATGTGACATCCC 58.229 43.478 0.00 0.00 43.80 3.85
2616 2677 6.019801 CGTAAGCTACAGTAAATGTGACATCC 60.020 42.308 0.00 0.00 43.80 3.51
2617 2678 6.530534 ACGTAAGCTACAGTAAATGTGACATC 59.469 38.462 0.00 0.00 42.33 3.06
2619 2680 5.631929 CACGTAAGCTACAGTAAATGTGACA 59.368 40.000 0.00 0.00 42.33 3.58
2620 2681 5.860182 TCACGTAAGCTACAGTAAATGTGAC 59.140 40.000 0.00 0.00 42.33 3.67
2622 2683 5.631929 TGTCACGTAAGCTACAGTAAATGTG 59.368 40.000 0.00 0.00 42.33 3.21
2623 2684 5.775686 TGTCACGTAAGCTACAGTAAATGT 58.224 37.500 0.00 0.00 44.26 2.71
2624 2685 6.019801 GGATGTCACGTAAGCTACAGTAAATG 60.020 42.308 0.00 0.00 45.62 2.32
2625 2686 6.040878 GGATGTCACGTAAGCTACAGTAAAT 58.959 40.000 0.00 0.00 45.62 1.40
2626 2687 5.404946 GGATGTCACGTAAGCTACAGTAAA 58.595 41.667 0.00 0.00 45.62 2.01
2627 2688 4.142315 GGGATGTCACGTAAGCTACAGTAA 60.142 45.833 0.00 0.00 45.62 2.24
2628 2689 3.379372 GGGATGTCACGTAAGCTACAGTA 59.621 47.826 0.00 0.00 45.62 2.74
2629 2690 2.165845 GGGATGTCACGTAAGCTACAGT 59.834 50.000 0.00 0.00 45.62 3.55
2630 2691 2.427453 AGGGATGTCACGTAAGCTACAG 59.573 50.000 0.00 0.00 45.62 2.74
2631 2692 2.453521 AGGGATGTCACGTAAGCTACA 58.546 47.619 0.00 0.00 45.62 2.74
2632 2693 3.119245 TCAAGGGATGTCACGTAAGCTAC 60.119 47.826 0.00 0.00 45.62 3.58
2633 2694 3.093814 TCAAGGGATGTCACGTAAGCTA 58.906 45.455 0.00 0.00 45.62 3.32
2634 2695 1.899814 TCAAGGGATGTCACGTAAGCT 59.100 47.619 0.00 0.00 45.62 3.74
2635 2696 2.271800 CTCAAGGGATGTCACGTAAGC 58.728 52.381 0.00 0.00 45.62 3.09
2636 2697 2.496070 TCCTCAAGGGATGTCACGTAAG 59.504 50.000 0.00 0.00 39.58 2.34
2639 2700 3.067011 TCCTCAAGGGATGTCACGT 57.933 52.632 0.00 0.00 39.58 4.49
2648 2709 3.326297 GGATCCTCTAACATCCTCAAGGG 59.674 52.174 3.84 0.00 36.39 3.95
2649 2710 3.006323 CGGATCCTCTAACATCCTCAAGG 59.994 52.174 10.75 0.00 37.08 3.61
2651 2712 3.643237 ACGGATCCTCTAACATCCTCAA 58.357 45.455 10.75 0.00 37.08 3.02
2653 2714 4.501743 GGAAACGGATCCTCTAACATCCTC 60.502 50.000 10.75 0.00 37.08 3.71
2654 2715 3.388350 GGAAACGGATCCTCTAACATCCT 59.612 47.826 10.75 0.00 37.08 3.24
2656 2717 3.134081 TGGGAAACGGATCCTCTAACATC 59.866 47.826 10.75 0.00 39.57 3.06
2658 2719 2.235402 GTGGGAAACGGATCCTCTAACA 59.765 50.000 10.75 0.00 39.57 2.41
2659 2720 2.419713 GGTGGGAAACGGATCCTCTAAC 60.420 54.545 10.75 3.81 39.57 2.34
2661 2722 1.492764 GGTGGGAAACGGATCCTCTA 58.507 55.000 10.75 0.00 39.57 2.43
2662 2723 1.614241 CGGTGGGAAACGGATCCTCT 61.614 60.000 10.75 0.00 39.57 3.69
2663 2724 1.153429 CGGTGGGAAACGGATCCTC 60.153 63.158 10.75 0.00 39.57 3.71
2664 2725 2.987125 CGGTGGGAAACGGATCCT 59.013 61.111 10.75 0.00 39.57 3.24
2670 2731 3.047877 GCTCACCGGTGGGAAACG 61.048 66.667 38.64 17.53 36.97 3.60
2674 2735 3.770040 CGATGCTCACCGGTGGGA 61.770 66.667 38.64 26.58 36.97 4.37
2681 2742 1.880601 CTATTCGCGCGATGCTCACC 61.881 60.000 35.21 0.00 43.27 4.02
2722 2908 0.032952 TTCCTCCACTGAAACGACGG 59.967 55.000 0.00 0.00 0.00 4.79
2727 2913 6.909909 ACGAAAATATTTCCTCCACTGAAAC 58.090 36.000 0.10 0.00 34.77 2.78
2745 2931 4.094090 ACTACGGCAACAAAAACGAAAA 57.906 36.364 0.00 0.00 0.00 2.29
2758 2944 3.708544 CCGGGGGAAACTACGGCA 61.709 66.667 0.00 0.00 41.17 5.69
2836 3026 0.164432 GGTAAAAGTACCGCACACGC 59.836 55.000 0.00 0.00 40.59 5.34
2887 3079 7.860373 TCAATACAAGTGTGCATGTTTCTTTAC 59.140 33.333 0.00 0.00 0.00 2.01
2953 3145 8.547967 AGCAATAATATCTGGTTACATTACGG 57.452 34.615 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.