Multiple sequence alignment - TraesCS2B01G239800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G239800 chr2B 100.000 2751 0 0 1 2751 244173356 244170606 0.000000e+00 5081.0
1 TraesCS2B01G239800 chr2B 90.816 392 29 5 2364 2751 209249536 209249148 4.060000e-143 518.0
2 TraesCS2B01G239800 chr2B 100.000 32 0 0 115 146 244173105 244173074 2.960000e-05 60.2
3 TraesCS2B01G239800 chr2B 100.000 32 0 0 252 283 244173242 244173211 2.960000e-05 60.2
4 TraesCS2B01G239800 chr2A 92.773 2380 97 28 35 2358 201799191 201796831 0.000000e+00 3373.0
5 TraesCS2B01G239800 chr2D 91.962 1978 71 31 407 2358 188281858 188279943 0.000000e+00 2691.0
6 TraesCS2B01G239800 chr2D 95.429 175 5 3 145 316 188282198 188282024 2.700000e-70 276.0
7 TraesCS2B01G239800 chr2D 88.889 126 10 3 301 422 188281998 188281873 4.750000e-33 152.0
8 TraesCS2B01G239800 chr2D 100.000 32 0 0 115 146 188282088 188282057 2.960000e-05 60.2
9 TraesCS2B01G239800 chr3B 93.194 382 24 1 2372 2751 777199529 777199148 6.650000e-156 560.0
10 TraesCS2B01G239800 chr5B 91.795 390 30 1 2364 2751 548558597 548558986 2.410000e-150 542.0
11 TraesCS2B01G239800 chr5B 88.776 392 42 1 2362 2751 503311666 503311275 1.920000e-131 479.0
12 TraesCS2B01G239800 chr7B 90.727 399 35 2 2355 2751 173067693 173067295 5.220000e-147 531.0
13 TraesCS2B01G239800 chr7B 90.404 396 36 1 2358 2751 620603584 620603189 1.130000e-143 520.0
14 TraesCS2B01G239800 chr7B 90.561 392 30 5 2364 2751 646374394 646374006 1.890000e-141 512.0
15 TraesCS2B01G239800 chr3D 88.945 398 39 4 2357 2751 50418388 50417993 1.150000e-133 486.0
16 TraesCS2B01G239800 chr6B 88.974 390 39 3 2364 2751 216350429 216350816 1.920000e-131 479.0
17 TraesCS2B01G239800 chr3A 86.000 50 7 0 33 82 703210808 703210759 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G239800 chr2B 244170606 244173356 2750 True 1733.8 5081 100.000 1 2751 3 chr2B.!!$R2 2750
1 TraesCS2B01G239800 chr2A 201796831 201799191 2360 True 3373.0 3373 92.773 35 2358 1 chr2A.!!$R1 2323
2 TraesCS2B01G239800 chr2D 188279943 188282198 2255 True 794.8 2691 94.070 115 2358 4 chr2D.!!$R1 2243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1092 0.771755 GGGAGGAGAACCAAGGTTGT 59.228 55.0 9.61 5.1 38.6 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2572 0.037605 AACGGTAGCGAAAGGGTCAG 60.038 55.0 22.88 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.340230 GAAAATCATCCGGCTTAAACTAAATG 57.660 34.615 0.00 0.00 0.00 2.32
26 27 7.404671 AAATCATCCGGCTTAAACTAAATGT 57.595 32.000 0.00 0.00 0.00 2.71
27 28 7.404671 AATCATCCGGCTTAAACTAAATGTT 57.595 32.000 0.00 0.00 41.29 2.71
29 30 7.222000 TCATCCGGCTTAAACTAAATGTTTT 57.778 32.000 0.00 0.00 45.69 2.43
30 31 7.309920 TCATCCGGCTTAAACTAAATGTTTTC 58.690 34.615 0.00 0.00 45.69 2.29
31 32 6.016213 TCCGGCTTAAACTAAATGTTTTCC 57.984 37.500 0.00 0.00 45.69 3.13
32 33 5.771165 TCCGGCTTAAACTAAATGTTTTCCT 59.229 36.000 0.00 0.00 45.69 3.36
33 34 6.941436 TCCGGCTTAAACTAAATGTTTTCCTA 59.059 34.615 0.00 0.00 45.69 2.94
74 75 7.771183 TGATTAAACTTTGCACTCTTTGACTT 58.229 30.769 0.00 0.00 0.00 3.01
81 82 6.374333 ACTTTGCACTCTTTGACTTTAGACAA 59.626 34.615 0.00 0.00 0.00 3.18
82 83 6.942532 TTGCACTCTTTGACTTTAGACAAT 57.057 33.333 0.00 0.00 30.67 2.71
144 145 0.976641 ACTGAGCACCATCTCCGAAA 59.023 50.000 0.00 0.00 32.22 3.46
146 147 1.205655 CTGAGCACCATCTCCGAAAGA 59.794 52.381 0.00 0.00 38.72 2.52
147 148 1.205655 TGAGCACCATCTCCGAAAGAG 59.794 52.381 0.00 0.00 44.75 2.85
199 220 5.447954 GCGTTTTTAAAATGTTGTTGCCCTT 60.448 36.000 10.76 0.00 0.00 3.95
240 261 1.705873 GTCCTGGATCGACACCCTAT 58.294 55.000 0.00 0.00 0.00 2.57
293 314 3.353836 CCGAAAGCCACACCACCG 61.354 66.667 0.00 0.00 0.00 4.94
411 477 4.022676 AGCCCAACGTTTGTATACCTTTTG 60.023 41.667 0.00 0.00 0.00 2.44
415 481 6.418523 CCCAACGTTTGTATACCTTTTGTTTC 59.581 38.462 0.00 0.00 0.00 2.78
440 536 6.773080 TCTTTCTTCTAGTACGTCGAATCAG 58.227 40.000 0.00 0.00 0.00 2.90
442 538 5.715429 TCTTCTAGTACGTCGAATCAGTC 57.285 43.478 0.00 0.00 0.00 3.51
449 545 2.881074 ACGTCGAATCAGTCTCCAATG 58.119 47.619 0.00 0.00 0.00 2.82
456 552 4.437930 CGAATCAGTCTCCAATGCCTTTTC 60.438 45.833 0.00 0.00 0.00 2.29
471 567 5.535333 TGCCTTTTCCAGCTACGTATATAC 58.465 41.667 2.53 2.53 0.00 1.47
561 658 7.648908 TCAGTATGAAAGTTGCACAATTTGAAG 59.351 33.333 2.79 0.00 45.97 3.02
623 720 3.397482 AGTGAGGATGCAGATTAATCGC 58.603 45.455 19.00 19.00 0.00 4.58
697 794 1.553248 TGACGGGTAATTAGCAGTGCT 59.447 47.619 23.44 23.44 43.41 4.40
710 807 1.403493 CAGTGCTATCGATGTCTCGC 58.597 55.000 8.54 3.56 44.65 5.03
955 1055 2.226330 CGTTCCTCCATTTTCACCACA 58.774 47.619 0.00 0.00 0.00 4.17
988 1088 1.275421 GGAGGGGAGGAGAACCAAGG 61.275 65.000 0.00 0.00 38.94 3.61
992 1092 0.771755 GGGAGGAGAACCAAGGTTGT 59.228 55.000 9.61 5.10 38.60 3.32
1055 1155 3.630148 CGTCGCCATGGATGTCGC 61.630 66.667 18.40 5.03 0.00 5.19
1074 1174 2.750237 GCCGGCGTCCTTGGAATT 60.750 61.111 12.58 0.00 0.00 2.17
1103 1203 0.908198 AAAGCTCAGAGCCAGGTAGG 59.092 55.000 19.40 0.00 43.77 3.18
1159 1259 3.640498 TCTGGTGATGTTTCATGGCAAAA 59.360 39.130 0.00 0.00 33.56 2.44
1172 1272 8.992073 GTTTCATGGCAAAATTTGATTACTCTT 58.008 29.630 10.26 0.00 0.00 2.85
1415 1515 4.063967 CCTGTCCTACGCACGCCA 62.064 66.667 0.00 0.00 0.00 5.69
1549 1650 1.685224 GATGGTTCTGCTGGTGGGA 59.315 57.895 0.00 0.00 0.00 4.37
1648 1749 3.466791 CTCCATCGGCGGCATCCTT 62.467 63.158 10.53 0.00 0.00 3.36
1651 1752 2.114670 CATCGGCGGCATCCTTTGT 61.115 57.895 10.53 0.00 0.00 2.83
1678 1779 2.811317 GCCGTCTTCTGCCTCGTG 60.811 66.667 0.00 0.00 0.00 4.35
1753 1854 3.908081 CCCGCCGGCGTGTAGTAT 61.908 66.667 43.12 0.00 37.81 2.12
1789 1899 3.899981 GACCAGTCGCCATGCACCA 62.900 63.158 0.00 0.00 0.00 4.17
1812 1922 2.819595 CCGCGTGTTGCTGCCTAT 60.820 61.111 4.92 0.00 43.27 2.57
1818 1928 0.171903 GTGTTGCTGCCTATGCCTTG 59.828 55.000 0.00 0.00 36.33 3.61
1823 1933 1.718757 GCTGCCTATGCCTTGTTCGG 61.719 60.000 0.00 0.00 36.33 4.30
1826 1936 1.279558 TGCCTATGCCTTGTTCGGTAA 59.720 47.619 0.00 0.00 36.33 2.85
2022 2133 2.928334 TCGTAAGAGGCCGATACTTCT 58.072 47.619 0.00 0.00 45.01 2.85
2041 2152 2.025418 GGGTGACGACGCGTTCATT 61.025 57.895 15.53 0.00 41.37 2.57
2046 2157 0.782384 GACGACGCGTTCATTTGAGT 59.218 50.000 15.53 3.76 41.37 3.41
2171 2294 4.056125 CCGACAGAGCTCGGTGCA 62.056 66.667 24.62 0.00 46.93 4.57
2176 2299 4.521062 AGAGCTCGGTGCATCGGC 62.521 66.667 21.08 20.85 45.94 5.54
2182 2305 4.776322 CGGTGCATCGGCCAGGAA 62.776 66.667 12.68 0.00 40.13 3.36
2183 2306 2.361104 GGTGCATCGGCCAGGAAA 60.361 61.111 2.24 0.00 40.13 3.13
2184 2307 1.976474 GGTGCATCGGCCAGGAAAA 60.976 57.895 2.24 0.00 40.13 2.29
2228 2356 2.154462 CCTGTCAGATTTTTGCCGACT 58.846 47.619 0.00 0.00 0.00 4.18
2230 2358 3.372206 CCTGTCAGATTTTTGCCGACTAG 59.628 47.826 0.00 0.00 0.00 2.57
2231 2359 3.334691 TGTCAGATTTTTGCCGACTAGG 58.665 45.455 0.00 0.00 44.97 3.02
2232 2360 2.678336 GTCAGATTTTTGCCGACTAGGG 59.322 50.000 0.00 0.00 41.48 3.53
2233 2361 2.569853 TCAGATTTTTGCCGACTAGGGA 59.430 45.455 0.00 0.00 41.48 4.20
2291 2423 0.908198 AAGACTGCATCCTGAGTCCC 59.092 55.000 0.00 0.00 39.64 4.46
2296 2428 2.202797 CATCCTGAGTCCCGTGCG 60.203 66.667 0.00 0.00 0.00 5.34
2317 2457 2.560861 CATCACGCCAACCGGTTG 59.439 61.111 35.60 35.60 42.52 3.77
2325 2465 1.302192 CCAACCGGTTGTGGTCGAT 60.302 57.895 37.97 5.11 42.89 3.59
2358 2498 3.129502 CATCCACTGTGCCAGCCG 61.130 66.667 1.29 0.00 34.37 5.52
2359 2499 4.415150 ATCCACTGTGCCAGCCGG 62.415 66.667 1.29 0.00 34.37 6.13
2364 2504 4.680237 CTGTGCCAGCCGGTCGAA 62.680 66.667 1.90 0.00 33.28 3.71
2365 2505 3.958147 CTGTGCCAGCCGGTCGAAT 62.958 63.158 1.90 0.00 33.28 3.34
2366 2506 2.746277 GTGCCAGCCGGTCGAATT 60.746 61.111 1.90 0.00 33.28 2.17
2367 2507 2.033448 TGCCAGCCGGTCGAATTT 59.967 55.556 1.90 0.00 33.28 1.82
2368 2508 2.038269 TGCCAGCCGGTCGAATTTC 61.038 57.895 1.90 0.00 33.28 2.17
2369 2509 3.089784 CCAGCCGGTCGAATTTCG 58.910 61.111 12.54 12.54 42.10 3.46
2370 2510 1.740296 CCAGCCGGTCGAATTTCGT 60.740 57.895 17.61 0.00 41.35 3.85
2371 2511 1.419922 CAGCCGGTCGAATTTCGTG 59.580 57.895 17.61 9.42 41.35 4.35
2372 2512 1.005394 AGCCGGTCGAATTTCGTGT 60.005 52.632 17.61 0.00 41.35 4.49
2373 2513 0.601841 AGCCGGTCGAATTTCGTGTT 60.602 50.000 17.61 2.23 41.35 3.32
2374 2514 0.179233 GCCGGTCGAATTTCGTGTTC 60.179 55.000 17.61 7.76 41.35 3.18
2375 2515 1.425412 CCGGTCGAATTTCGTGTTCT 58.575 50.000 17.61 0.00 41.35 3.01
2376 2516 1.126113 CCGGTCGAATTTCGTGTTCTG 59.874 52.381 17.61 11.43 41.35 3.02
2377 2517 2.055838 CGGTCGAATTTCGTGTTCTGA 58.944 47.619 17.61 0.00 41.35 3.27
2378 2518 2.160013 CGGTCGAATTTCGTGTTCTGAC 60.160 50.000 17.61 7.24 41.35 3.51
2379 2519 2.157085 GGTCGAATTTCGTGTTCTGACC 59.843 50.000 17.61 12.12 41.35 4.02
2380 2520 2.157085 GTCGAATTTCGTGTTCTGACCC 59.843 50.000 17.61 0.00 41.35 4.46
2381 2521 2.036733 TCGAATTTCGTGTTCTGACCCT 59.963 45.455 17.61 0.00 41.35 4.34
2382 2522 2.806244 CGAATTTCGTGTTCTGACCCTT 59.194 45.455 10.61 0.00 34.72 3.95
2383 2523 3.250040 CGAATTTCGTGTTCTGACCCTTT 59.750 43.478 10.61 0.00 34.72 3.11
2384 2524 4.261031 CGAATTTCGTGTTCTGACCCTTTT 60.261 41.667 10.61 0.00 34.72 2.27
2385 2525 5.588240 GAATTTCGTGTTCTGACCCTTTTT 58.412 37.500 0.00 0.00 0.00 1.94
2386 2526 4.625972 TTTCGTGTTCTGACCCTTTTTC 57.374 40.909 0.00 0.00 0.00 2.29
2387 2527 2.206750 TCGTGTTCTGACCCTTTTTCG 58.793 47.619 0.00 0.00 0.00 3.46
2388 2528 2.159071 TCGTGTTCTGACCCTTTTTCGA 60.159 45.455 0.00 0.00 0.00 3.71
2389 2529 2.806244 CGTGTTCTGACCCTTTTTCGAT 59.194 45.455 0.00 0.00 0.00 3.59
2390 2530 3.991773 CGTGTTCTGACCCTTTTTCGATA 59.008 43.478 0.00 0.00 0.00 2.92
2391 2531 4.143179 CGTGTTCTGACCCTTTTTCGATAC 60.143 45.833 0.00 0.00 0.00 2.24
2392 2532 4.753107 GTGTTCTGACCCTTTTTCGATACA 59.247 41.667 0.00 0.00 0.00 2.29
2393 2533 5.237779 GTGTTCTGACCCTTTTTCGATACAA 59.762 40.000 0.00 0.00 0.00 2.41
2394 2534 5.823570 TGTTCTGACCCTTTTTCGATACAAA 59.176 36.000 0.00 0.00 0.00 2.83
2395 2535 6.488683 TGTTCTGACCCTTTTTCGATACAAAT 59.511 34.615 0.00 0.00 0.00 2.32
2396 2536 7.013846 TGTTCTGACCCTTTTTCGATACAAATT 59.986 33.333 0.00 0.00 0.00 1.82
2397 2537 7.141100 TCTGACCCTTTTTCGATACAAATTC 57.859 36.000 0.00 0.00 0.00 2.17
2398 2538 6.712998 TCTGACCCTTTTTCGATACAAATTCA 59.287 34.615 0.00 0.00 0.00 2.57
2399 2539 6.908825 TGACCCTTTTTCGATACAAATTCAG 58.091 36.000 0.00 0.00 0.00 3.02
2400 2540 6.072175 TGACCCTTTTTCGATACAAATTCAGG 60.072 38.462 0.00 0.00 0.00 3.86
2401 2541 6.007703 ACCCTTTTTCGATACAAATTCAGGA 58.992 36.000 0.00 0.00 0.00 3.86
2402 2542 6.663523 ACCCTTTTTCGATACAAATTCAGGAT 59.336 34.615 0.00 0.00 0.00 3.24
2403 2543 7.178451 ACCCTTTTTCGATACAAATTCAGGATT 59.822 33.333 0.00 0.00 0.00 3.01
2404 2544 8.034804 CCCTTTTTCGATACAAATTCAGGATTT 58.965 33.333 0.00 0.00 38.49 2.17
2417 2557 1.812571 CAGGATTTGACCCTGGTTTCG 59.187 52.381 0.00 0.00 45.66 3.46
2418 2558 1.702957 AGGATTTGACCCTGGTTTCGA 59.297 47.619 0.00 0.00 31.66 3.71
2419 2559 2.107552 AGGATTTGACCCTGGTTTCGAA 59.892 45.455 0.00 0.00 31.66 3.71
2420 2560 2.888414 GGATTTGACCCTGGTTTCGAAA 59.112 45.455 6.47 6.47 0.00 3.46
2421 2561 3.319689 GGATTTGACCCTGGTTTCGAAAA 59.680 43.478 13.10 0.00 0.00 2.29
2422 2562 4.021456 GGATTTGACCCTGGTTTCGAAAAT 60.021 41.667 13.10 0.00 0.00 1.82
2423 2563 5.510690 GGATTTGACCCTGGTTTCGAAAATT 60.511 40.000 13.10 0.00 0.00 1.82
2424 2564 5.346181 TTTGACCCTGGTTTCGAAAATTT 57.654 34.783 13.10 0.00 0.00 1.82
2425 2565 5.346181 TTGACCCTGGTTTCGAAAATTTT 57.654 34.783 13.10 2.28 0.00 1.82
2426 2566 4.939271 TGACCCTGGTTTCGAAAATTTTC 58.061 39.130 19.08 19.08 0.00 2.29
2440 2580 6.502136 GAAAATTTTCGAGATCTGACCCTT 57.498 37.500 14.83 0.00 0.00 3.95
2441 2581 6.901081 AAAATTTTCGAGATCTGACCCTTT 57.099 33.333 0.00 0.00 0.00 3.11
2442 2582 6.502136 AAATTTTCGAGATCTGACCCTTTC 57.498 37.500 0.00 0.00 0.00 2.62
2443 2583 2.941453 TTCGAGATCTGACCCTTTCG 57.059 50.000 0.00 0.00 0.00 3.46
2444 2584 0.456221 TCGAGATCTGACCCTTTCGC 59.544 55.000 0.00 0.00 0.00 4.70
2445 2585 0.457851 CGAGATCTGACCCTTTCGCT 59.542 55.000 0.00 0.00 0.00 4.93
2446 2586 1.676529 CGAGATCTGACCCTTTCGCTA 59.323 52.381 0.00 0.00 0.00 4.26
2447 2587 2.541999 CGAGATCTGACCCTTTCGCTAC 60.542 54.545 0.00 0.00 0.00 3.58
2448 2588 1.757699 AGATCTGACCCTTTCGCTACC 59.242 52.381 0.00 0.00 0.00 3.18
2449 2589 0.460311 ATCTGACCCTTTCGCTACCG 59.540 55.000 0.00 0.00 0.00 4.02
2450 2590 0.896940 TCTGACCCTTTCGCTACCGT 60.897 55.000 0.00 0.00 35.54 4.83
2451 2591 0.037605 CTGACCCTTTCGCTACCGTT 60.038 55.000 0.00 0.00 35.54 4.44
2452 2592 1.203052 CTGACCCTTTCGCTACCGTTA 59.797 52.381 0.00 0.00 35.54 3.18
2453 2593 1.067635 TGACCCTTTCGCTACCGTTAC 60.068 52.381 0.00 0.00 35.54 2.50
2454 2594 0.968405 ACCCTTTCGCTACCGTTACA 59.032 50.000 0.00 0.00 35.54 2.41
2455 2595 1.067354 ACCCTTTCGCTACCGTTACAG 60.067 52.381 0.00 0.00 35.54 2.74
2456 2596 1.636988 CCTTTCGCTACCGTTACAGG 58.363 55.000 0.00 0.00 35.54 4.00
2458 2598 2.611224 CCTTTCGCTACCGTTACAGGTT 60.611 50.000 4.47 0.00 43.00 3.50
2459 2599 2.818130 TTCGCTACCGTTACAGGTTT 57.182 45.000 4.47 0.00 43.00 3.27
2460 2600 2.818130 TCGCTACCGTTACAGGTTTT 57.182 45.000 4.47 0.00 43.00 2.43
2461 2601 2.406130 TCGCTACCGTTACAGGTTTTG 58.594 47.619 4.47 0.00 43.00 2.44
2462 2602 1.461897 CGCTACCGTTACAGGTTTTGG 59.538 52.381 4.47 0.00 43.00 3.28
2463 2603 1.198408 GCTACCGTTACAGGTTTTGGC 59.802 52.381 4.47 2.54 43.00 4.52
2464 2604 1.461897 CTACCGTTACAGGTTTTGGCG 59.538 52.381 4.47 0.00 43.00 5.69
2465 2605 1.167781 ACCGTTACAGGTTTTGGCGG 61.168 55.000 0.00 0.00 43.00 6.13
2466 2606 1.167781 CCGTTACAGGTTTTGGCGGT 61.168 55.000 0.00 0.00 36.57 5.68
2467 2607 1.510776 CGTTACAGGTTTTGGCGGTA 58.489 50.000 0.00 0.00 0.00 4.02
2468 2608 1.461897 CGTTACAGGTTTTGGCGGTAG 59.538 52.381 0.00 0.00 0.00 3.18
2469 2609 1.808343 GTTACAGGTTTTGGCGGTAGG 59.192 52.381 0.00 0.00 0.00 3.18
2470 2610 0.325602 TACAGGTTTTGGCGGTAGGG 59.674 55.000 0.00 0.00 0.00 3.53
2471 2611 1.074248 CAGGTTTTGGCGGTAGGGT 59.926 57.895 0.00 0.00 0.00 4.34
2472 2612 0.538746 CAGGTTTTGGCGGTAGGGTT 60.539 55.000 0.00 0.00 0.00 4.11
2473 2613 1.066471 AGGTTTTGGCGGTAGGGTTA 58.934 50.000 0.00 0.00 0.00 2.85
2474 2614 1.003928 AGGTTTTGGCGGTAGGGTTAG 59.996 52.381 0.00 0.00 0.00 2.34
2475 2615 1.003464 GGTTTTGGCGGTAGGGTTAGA 59.997 52.381 0.00 0.00 0.00 2.10
2476 2616 2.079158 GTTTTGGCGGTAGGGTTAGAC 58.921 52.381 0.00 0.00 0.00 2.59
2477 2617 1.350071 TTTGGCGGTAGGGTTAGACA 58.650 50.000 0.00 0.00 0.00 3.41
2478 2618 1.575419 TTGGCGGTAGGGTTAGACAT 58.425 50.000 0.00 0.00 0.00 3.06
2479 2619 0.828022 TGGCGGTAGGGTTAGACATG 59.172 55.000 0.00 0.00 0.00 3.21
2480 2620 0.532196 GGCGGTAGGGTTAGACATGC 60.532 60.000 0.00 0.00 0.00 4.06
2481 2621 0.464452 GCGGTAGGGTTAGACATGCT 59.536 55.000 0.00 0.00 0.00 3.79
2482 2622 1.684983 GCGGTAGGGTTAGACATGCTA 59.315 52.381 0.00 0.00 0.00 3.49
2483 2623 2.545322 GCGGTAGGGTTAGACATGCTAC 60.545 54.545 0.00 0.00 0.00 3.58
2484 2624 2.035576 CGGTAGGGTTAGACATGCTACC 59.964 54.545 11.40 11.40 33.89 3.18
2485 2625 2.035576 GGTAGGGTTAGACATGCTACCG 59.964 54.545 7.43 0.00 0.00 4.02
2486 2626 0.464452 AGGGTTAGACATGCTACCGC 59.536 55.000 0.00 0.00 0.00 5.68
2487 2627 0.532196 GGGTTAGACATGCTACCGCC 60.532 60.000 0.00 0.00 34.43 6.13
2488 2628 0.177141 GGTTAGACATGCTACCGCCA 59.823 55.000 0.00 0.00 34.43 5.69
2489 2629 1.571919 GTTAGACATGCTACCGCCAG 58.428 55.000 0.00 0.00 34.43 4.85
2490 2630 0.464036 TTAGACATGCTACCGCCAGG 59.536 55.000 0.00 0.00 45.13 4.45
2491 2631 1.399744 TAGACATGCTACCGCCAGGG 61.400 60.000 0.00 0.00 43.47 4.45
2505 2645 4.798682 AGGGTCCCTGGCGGTAGG 62.799 72.222 10.61 0.00 37.59 3.18
2512 2652 4.814294 CTGGCGGTAGGGTGCGAC 62.814 72.222 0.00 0.00 0.00 5.19
2516 2656 4.189188 CGGTAGGGTGCGACGGAG 62.189 72.222 0.00 0.00 0.00 4.63
2517 2657 3.834799 GGTAGGGTGCGACGGAGG 61.835 72.222 0.00 0.00 0.00 4.30
2518 2658 3.834799 GTAGGGTGCGACGGAGGG 61.835 72.222 0.00 0.00 0.00 4.30
2545 2685 3.055719 CCGTTTGCCCGTGCTGAT 61.056 61.111 0.00 0.00 38.71 2.90
2546 2686 2.176546 CGTTTGCCCGTGCTGATG 59.823 61.111 0.00 0.00 38.71 3.07
2547 2687 2.616330 CGTTTGCCCGTGCTGATGT 61.616 57.895 0.00 0.00 38.71 3.06
2548 2688 1.081242 GTTTGCCCGTGCTGATGTG 60.081 57.895 0.00 0.00 38.71 3.21
2549 2689 2.267351 TTTGCCCGTGCTGATGTGG 61.267 57.895 0.00 0.00 38.71 4.17
2550 2690 2.689035 TTTGCCCGTGCTGATGTGGA 62.689 55.000 0.00 0.00 38.71 4.02
2551 2691 3.127533 GCCCGTGCTGATGTGGAC 61.128 66.667 0.00 0.00 33.53 4.02
2552 2692 2.347114 CCCGTGCTGATGTGGACA 59.653 61.111 0.00 0.00 0.00 4.02
2553 2693 1.302431 CCCGTGCTGATGTGGACAA 60.302 57.895 0.00 0.00 0.00 3.18
2554 2694 1.300971 CCCGTGCTGATGTGGACAAG 61.301 60.000 0.00 0.00 0.00 3.16
2555 2695 0.603707 CCGTGCTGATGTGGACAAGT 60.604 55.000 0.00 0.00 0.00 3.16
2556 2696 1.337728 CCGTGCTGATGTGGACAAGTA 60.338 52.381 0.00 0.00 0.00 2.24
2557 2697 1.995484 CGTGCTGATGTGGACAAGTAG 59.005 52.381 0.00 0.00 0.00 2.57
2558 2698 1.734465 GTGCTGATGTGGACAAGTAGC 59.266 52.381 0.00 0.00 33.61 3.58
2559 2699 1.339055 TGCTGATGTGGACAAGTAGCC 60.339 52.381 9.42 0.00 32.71 3.93
2560 2700 1.065854 GCTGATGTGGACAAGTAGCCT 60.066 52.381 0.00 0.00 0.00 4.58
2561 2701 2.168521 GCTGATGTGGACAAGTAGCCTA 59.831 50.000 0.00 0.00 0.00 3.93
2562 2702 3.786635 CTGATGTGGACAAGTAGCCTAC 58.213 50.000 0.00 0.00 0.00 3.18
2563 2703 2.500098 TGATGTGGACAAGTAGCCTACC 59.500 50.000 0.00 0.00 0.00 3.18
2564 2704 0.892755 TGTGGACAAGTAGCCTACCG 59.107 55.000 0.00 0.00 0.00 4.02
2565 2705 0.459759 GTGGACAAGTAGCCTACCGC 60.460 60.000 0.00 0.00 37.98 5.68
2566 2706 1.143401 GGACAAGTAGCCTACCGCC 59.857 63.158 0.00 0.00 38.78 6.13
2567 2707 1.610554 GGACAAGTAGCCTACCGCCA 61.611 60.000 0.00 0.00 38.78 5.69
2568 2708 0.179108 GACAAGTAGCCTACCGCCAG 60.179 60.000 0.00 0.00 38.78 4.85
2569 2709 1.144057 CAAGTAGCCTACCGCCAGG 59.856 63.158 0.00 0.00 45.13 4.45
2570 2710 2.064581 AAGTAGCCTACCGCCAGGG 61.065 63.158 0.00 0.00 43.47 4.45
2571 2711 2.443390 GTAGCCTACCGCCAGGGA 60.443 66.667 3.06 0.00 43.47 4.20
2572 2712 2.443390 TAGCCTACCGCCAGGGAC 60.443 66.667 3.06 0.00 43.47 4.46
2575 2715 4.798682 CCTACCGCCAGGGACCCT 62.799 72.222 7.44 7.44 43.47 4.34
2588 2728 3.009115 ACCCTGGCGGTAGCATGT 61.009 61.111 0.00 0.00 45.97 3.21
2589 2729 2.602676 ACCCTGGCGGTAGCATGTT 61.603 57.895 0.00 0.00 45.97 2.71
2590 2730 1.268992 ACCCTGGCGGTAGCATGTTA 61.269 55.000 0.00 0.00 45.97 2.41
2591 2731 2.794957 ACCCTGGCGGTAGCATGTTAA 61.795 52.381 0.00 0.00 45.97 2.01
2592 2732 4.273239 ACCCTGGCGGTAGCATGTTAAA 62.273 50.000 0.00 0.00 45.97 1.52
2598 2738 4.268767 GCGGTAGCATGTTAAACCTTAC 57.731 45.455 0.00 0.00 44.35 2.34
2599 2739 3.064408 GCGGTAGCATGTTAAACCTTACC 59.936 47.826 0.00 0.00 44.35 2.85
2600 2740 3.307782 CGGTAGCATGTTAAACCTTACCG 59.692 47.826 3.86 3.86 41.19 4.02
2601 2741 3.064408 GGTAGCATGTTAAACCTTACCGC 59.936 47.826 0.00 0.00 0.00 5.68
2602 2742 2.089201 AGCATGTTAAACCTTACCGCC 58.911 47.619 0.00 0.00 0.00 6.13
2603 2743 1.813786 GCATGTTAAACCTTACCGCCA 59.186 47.619 0.00 0.00 0.00 5.69
2604 2744 2.159435 GCATGTTAAACCTTACCGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
2605 2745 1.525941 TGTTAAACCTTACCGCCAGC 58.474 50.000 0.00 0.00 0.00 4.85
2606 2746 1.202782 TGTTAAACCTTACCGCCAGCA 60.203 47.619 0.00 0.00 0.00 4.41
2607 2747 1.198408 GTTAAACCTTACCGCCAGCAC 59.802 52.381 0.00 0.00 0.00 4.40
2608 2748 0.321830 TAAACCTTACCGCCAGCACC 60.322 55.000 0.00 0.00 0.00 5.01
2609 2749 3.562732 AACCTTACCGCCAGCACCC 62.563 63.158 0.00 0.00 0.00 4.61
2611 2751 4.388499 CTTACCGCCAGCACCCGT 62.388 66.667 0.00 0.00 0.00 5.28
2612 2752 4.690719 TTACCGCCAGCACCCGTG 62.691 66.667 0.00 0.00 0.00 4.94
2619 2759 4.690719 CAGCACCCGTGGCGGTAA 62.691 66.667 6.82 0.00 46.80 2.85
2620 2760 3.943691 AGCACCCGTGGCGGTAAA 61.944 61.111 6.82 0.00 46.80 2.01
2621 2761 3.428282 GCACCCGTGGCGGTAAAG 61.428 66.667 6.82 0.00 46.80 1.85
2622 2762 2.031465 CACCCGTGGCGGTAAAGT 59.969 61.111 6.82 0.00 46.80 2.66
2623 2763 2.031465 ACCCGTGGCGGTAAAGTG 59.969 61.111 6.82 0.00 46.80 3.16
2624 2764 2.031465 CCCGTGGCGGTAAAGTGT 59.969 61.111 6.82 0.00 46.80 3.55
2625 2765 2.322081 CCCGTGGCGGTAAAGTGTG 61.322 63.158 6.82 0.00 46.80 3.82
2626 2766 2.322081 CCGTGGCGGTAAAGTGTGG 61.322 63.158 0.00 0.00 42.73 4.17
2627 2767 1.301087 CGTGGCGGTAAAGTGTGGA 60.301 57.895 0.00 0.00 0.00 4.02
2628 2768 0.672401 CGTGGCGGTAAAGTGTGGAT 60.672 55.000 0.00 0.00 0.00 3.41
2629 2769 0.802494 GTGGCGGTAAAGTGTGGATG 59.198 55.000 0.00 0.00 0.00 3.51
2630 2770 0.322098 TGGCGGTAAAGTGTGGATGG 60.322 55.000 0.00 0.00 0.00 3.51
2631 2771 1.029947 GGCGGTAAAGTGTGGATGGG 61.030 60.000 0.00 0.00 0.00 4.00
2632 2772 1.029947 GCGGTAAAGTGTGGATGGGG 61.030 60.000 0.00 0.00 0.00 4.96
2633 2773 1.029947 CGGTAAAGTGTGGATGGGGC 61.030 60.000 0.00 0.00 0.00 5.80
2634 2774 0.331616 GGTAAAGTGTGGATGGGGCT 59.668 55.000 0.00 0.00 0.00 5.19
2635 2775 1.272480 GGTAAAGTGTGGATGGGGCTT 60.272 52.381 0.00 0.00 0.00 4.35
2636 2776 2.525368 GTAAAGTGTGGATGGGGCTTT 58.475 47.619 0.00 0.00 34.35 3.51
2637 2777 1.341080 AAAGTGTGGATGGGGCTTTG 58.659 50.000 0.00 0.00 0.00 2.77
2638 2778 1.187567 AAGTGTGGATGGGGCTTTGC 61.188 55.000 0.00 0.00 0.00 3.68
2652 2792 4.855715 GGCTTTGCCTTCTAAAGTTTCT 57.144 40.909 0.73 0.00 46.69 2.52
2653 2793 4.550422 GGCTTTGCCTTCTAAAGTTTCTG 58.450 43.478 0.73 0.00 46.69 3.02
2654 2794 4.038042 GGCTTTGCCTTCTAAAGTTTCTGT 59.962 41.667 0.73 0.00 46.69 3.41
2655 2795 5.240844 GGCTTTGCCTTCTAAAGTTTCTGTA 59.759 40.000 0.73 0.00 46.69 2.74
2656 2796 6.238925 GGCTTTGCCTTCTAAAGTTTCTGTAA 60.239 38.462 0.73 0.00 46.69 2.41
2657 2797 6.637254 GCTTTGCCTTCTAAAGTTTCTGTAAC 59.363 38.462 0.00 0.00 37.44 2.50
2658 2798 5.917541 TGCCTTCTAAAGTTTCTGTAACG 57.082 39.130 0.00 0.00 41.78 3.18
2659 2799 5.603596 TGCCTTCTAAAGTTTCTGTAACGA 58.396 37.500 0.00 0.00 41.78 3.85
2660 2800 6.228258 TGCCTTCTAAAGTTTCTGTAACGAT 58.772 36.000 0.00 0.00 41.78 3.73
2661 2801 7.380536 TGCCTTCTAAAGTTTCTGTAACGATA 58.619 34.615 0.00 0.00 41.78 2.92
2662 2802 8.038944 TGCCTTCTAAAGTTTCTGTAACGATAT 58.961 33.333 0.00 0.00 41.78 1.63
2663 2803 9.525409 GCCTTCTAAAGTTTCTGTAACGATATA 57.475 33.333 0.00 0.00 41.78 0.86
2677 2817 2.969628 GATATATCGAGGTGCCCTGG 57.030 55.000 0.00 0.00 31.76 4.45
2678 2818 0.905357 ATATATCGAGGTGCCCTGGC 59.095 55.000 0.00 0.00 42.35 4.85
2679 2819 1.532604 TATATCGAGGTGCCCTGGCG 61.533 60.000 3.32 0.00 45.51 5.69
2690 2830 3.387947 CCTGGCGGGAGGTACGTT 61.388 66.667 6.48 0.00 37.23 3.99
2691 2831 2.183555 CTGGCGGGAGGTACGTTC 59.816 66.667 0.00 0.00 0.00 3.95
2692 2832 3.695022 CTGGCGGGAGGTACGTTCG 62.695 68.421 0.00 7.56 0.00 3.95
2693 2833 3.752339 GGCGGGAGGTACGTTCGT 61.752 66.667 0.00 2.91 0.00 3.85
2694 2834 2.202531 GCGGGAGGTACGTTCGTC 60.203 66.667 6.35 6.35 0.00 4.20
2695 2835 2.486966 CGGGAGGTACGTTCGTCC 59.513 66.667 21.54 21.54 40.40 4.79
2696 2836 2.042831 CGGGAGGTACGTTCGTCCT 61.043 63.158 26.31 14.99 40.77 3.85
2697 2837 0.744414 CGGGAGGTACGTTCGTCCTA 60.744 60.000 26.31 0.00 40.77 2.94
2698 2838 0.735471 GGGAGGTACGTTCGTCCTAC 59.265 60.000 26.31 15.19 40.77 3.18
2699 2839 0.735471 GGAGGTACGTTCGTCCTACC 59.265 60.000 22.14 9.64 38.75 3.18
2700 2840 0.375106 GAGGTACGTTCGTCCTACCG 59.625 60.000 13.16 0.00 36.03 4.02
2701 2841 1.226407 GGTACGTTCGTCCTACCGC 60.226 63.158 0.00 0.00 0.00 5.68
2702 2842 1.226407 GTACGTTCGTCCTACCGCC 60.226 63.158 0.00 0.00 0.00 6.13
2703 2843 1.673993 TACGTTCGTCCTACCGCCA 60.674 57.895 0.00 0.00 0.00 5.69
2704 2844 1.647545 TACGTTCGTCCTACCGCCAG 61.648 60.000 0.00 0.00 0.00 4.85
2705 2845 2.183555 GTTCGTCCTACCGCCAGG 59.816 66.667 0.00 0.00 45.13 4.45
2706 2846 3.072468 TTCGTCCTACCGCCAGGG 61.072 66.667 1.15 0.00 43.47 4.45
2718 2858 4.722700 CCAGGGTCCTTGGCGGTG 62.723 72.222 7.17 0.00 0.00 4.94
2719 2859 4.722700 CAGGGTCCTTGGCGGTGG 62.723 72.222 0.00 0.00 0.00 4.61
2721 2861 4.717313 GGGTCCTTGGCGGTGGTC 62.717 72.222 0.00 0.00 0.00 4.02
2722 2862 4.717313 GGTCCTTGGCGGTGGTCC 62.717 72.222 0.00 0.00 0.00 4.46
2723 2863 3.637273 GTCCTTGGCGGTGGTCCT 61.637 66.667 0.00 0.00 0.00 3.85
2724 2864 3.636231 TCCTTGGCGGTGGTCCTG 61.636 66.667 0.00 0.00 0.00 3.86
2725 2865 3.953775 CCTTGGCGGTGGTCCTGT 61.954 66.667 0.00 0.00 0.00 4.00
2726 2866 2.669569 CTTGGCGGTGGTCCTGTG 60.670 66.667 0.00 0.00 0.00 3.66
2727 2867 3.476031 CTTGGCGGTGGTCCTGTGT 62.476 63.158 0.00 0.00 0.00 3.72
2728 2868 2.958578 CTTGGCGGTGGTCCTGTGTT 62.959 60.000 0.00 0.00 0.00 3.32
2729 2869 2.203294 GGCGGTGGTCCTGTGTTT 60.203 61.111 0.00 0.00 0.00 2.83
2730 2870 1.826487 GGCGGTGGTCCTGTGTTTT 60.826 57.895 0.00 0.00 0.00 2.43
2731 2871 0.535553 GGCGGTGGTCCTGTGTTTTA 60.536 55.000 0.00 0.00 0.00 1.52
2732 2872 1.530323 GCGGTGGTCCTGTGTTTTAT 58.470 50.000 0.00 0.00 0.00 1.40
2733 2873 1.199097 GCGGTGGTCCTGTGTTTTATG 59.801 52.381 0.00 0.00 0.00 1.90
2734 2874 1.810151 CGGTGGTCCTGTGTTTTATGG 59.190 52.381 0.00 0.00 0.00 2.74
2735 2875 2.812613 CGGTGGTCCTGTGTTTTATGGT 60.813 50.000 0.00 0.00 0.00 3.55
2736 2876 3.227614 GGTGGTCCTGTGTTTTATGGTT 58.772 45.455 0.00 0.00 0.00 3.67
2737 2877 3.639561 GGTGGTCCTGTGTTTTATGGTTT 59.360 43.478 0.00 0.00 0.00 3.27
2738 2878 4.828387 GGTGGTCCTGTGTTTTATGGTTTA 59.172 41.667 0.00 0.00 0.00 2.01
2739 2879 5.479027 GGTGGTCCTGTGTTTTATGGTTTAT 59.521 40.000 0.00 0.00 0.00 1.40
2740 2880 6.660094 GGTGGTCCTGTGTTTTATGGTTTATA 59.340 38.462 0.00 0.00 0.00 0.98
2741 2881 7.177041 GGTGGTCCTGTGTTTTATGGTTTATAA 59.823 37.037 0.00 0.00 0.00 0.98
2742 2882 8.241367 GTGGTCCTGTGTTTTATGGTTTATAAG 58.759 37.037 0.00 0.00 33.03 1.73
2743 2883 7.945664 TGGTCCTGTGTTTTATGGTTTATAAGT 59.054 33.333 0.00 0.00 33.03 2.24
2744 2884 8.799367 GGTCCTGTGTTTTATGGTTTATAAGTT 58.201 33.333 0.00 0.00 33.03 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.973944 ACATTTAGTTTAAGCCGGATGATTTTC 59.026 33.333 5.05 0.00 0.00 2.29
1 2 7.836842 ACATTTAGTTTAAGCCGGATGATTTT 58.163 30.769 5.05 0.00 0.00 1.82
2 3 7.404671 ACATTTAGTTTAAGCCGGATGATTT 57.595 32.000 5.05 0.00 0.00 2.17
3 4 7.404671 AACATTTAGTTTAAGCCGGATGATT 57.595 32.000 5.05 0.00 37.03 2.57
53 54 8.395633 GTCTAAAGTCAAAGAGTGCAAAGTTTA 58.604 33.333 0.00 0.00 0.00 2.01
69 70 9.090692 GGCTTTTACGTATATTGTCTAAAGTCA 57.909 33.333 10.34 0.00 31.48 3.41
74 75 9.880157 AAGAAGGCTTTTACGTATATTGTCTAA 57.120 29.630 0.00 0.00 0.00 2.10
132 133 1.134280 CATGCCTCTTTCGGAGATGGT 60.134 52.381 0.00 0.00 44.45 3.55
175 196 4.034626 AGGGCAACAACATTTTAAAAACGC 59.965 37.500 4.44 0.79 39.74 4.84
199 220 4.131596 CGGAGGAAGTTTTGTTGTCCTTA 58.868 43.478 0.00 0.00 40.67 2.69
240 261 5.819379 AGTTTCTACTGTACGACGATGGATA 59.181 40.000 0.00 0.00 31.99 2.59
306 327 1.006086 CGATGTGGCGTGCAATAGAA 58.994 50.000 0.00 0.00 0.00 2.10
346 408 4.410743 GCCAGCCTGCGAAACAGC 62.411 66.667 0.00 0.00 45.78 4.40
385 451 2.160813 GGTATACAAACGTTGGGCTGTG 59.839 50.000 12.46 4.00 34.12 3.66
411 477 6.597614 TCGACGTACTAGAAGAAAGAGAAAC 58.402 40.000 0.00 0.00 0.00 2.78
415 481 6.773080 TGATTCGACGTACTAGAAGAAAGAG 58.227 40.000 0.00 0.00 0.00 2.85
422 488 4.569966 GGAGACTGATTCGACGTACTAGAA 59.430 45.833 0.00 0.00 0.00 2.10
424 490 3.869832 TGGAGACTGATTCGACGTACTAG 59.130 47.826 0.00 0.00 0.00 2.57
440 536 1.203287 GCTGGAAAAGGCATTGGAGAC 59.797 52.381 0.00 0.00 0.00 3.36
442 538 1.553706 AGCTGGAAAAGGCATTGGAG 58.446 50.000 0.00 0.00 0.00 3.86
449 545 5.404667 GTGTATATACGTAGCTGGAAAAGGC 59.595 44.000 8.33 0.00 0.00 4.35
456 552 4.841443 TGGTGTGTATATACGTAGCTGG 57.159 45.455 8.33 0.00 0.00 4.85
471 567 5.582269 AGAAACAGATCGTTATGATGGTGTG 59.418 40.000 0.00 0.00 37.47 3.82
561 658 8.167605 TCCATAGACTTACAGCTCTGTATTAC 57.832 38.462 10.20 5.53 44.54 1.89
680 777 2.987149 CGATAGCACTGCTAATTACCCG 59.013 50.000 14.74 7.98 44.62 5.28
790 888 1.194781 TTCCTCTCAGTGCTCCCACC 61.195 60.000 0.00 0.00 43.09 4.61
931 1031 0.958382 TGAAAATGGAGGAACGGCGG 60.958 55.000 13.24 0.00 0.00 6.13
937 1037 2.621055 CGTTGTGGTGAAAATGGAGGAA 59.379 45.455 0.00 0.00 0.00 3.36
955 1055 1.524863 CCCTCCTGTCGACTGTCGTT 61.525 60.000 27.16 0.00 41.35 3.85
988 1088 1.009829 CTCGCCATGGCTTCTACAAC 58.990 55.000 33.07 2.52 39.32 3.32
992 1092 1.134699 CAACTCTCGCCATGGCTTCTA 60.135 52.381 33.07 15.31 39.32 2.10
1074 1174 1.080501 CTGAGCTTTCTCCGCGTGA 60.081 57.895 4.92 0.00 38.58 4.35
1116 1216 2.293399 ACAACAACGAAATCCCTGCTTC 59.707 45.455 0.00 0.00 0.00 3.86
1159 1259 5.416952 CCCTGCAAGACAAGAGTAATCAAAT 59.583 40.000 0.00 0.00 34.07 2.32
1172 1272 2.853542 TGCCTCCCCTGCAAGACA 60.854 61.111 0.00 0.00 35.40 3.41
1292 1392 4.266070 GAGCAGCCGCCGACGATA 62.266 66.667 0.00 0.00 43.93 2.92
1415 1515 0.961857 TGATGTTGCGGCTCATGCTT 60.962 50.000 13.76 0.00 39.59 3.91
1549 1650 3.382803 GAGGATCAGCAGCGCCAGT 62.383 63.158 2.29 0.00 33.17 4.00
1648 1749 3.158011 GACGGCGTGCACGAAACAA 62.158 57.895 41.19 0.00 43.02 2.83
1651 1752 2.586635 AAGACGGCGTGCACGAAA 60.587 55.556 41.19 0.00 43.02 3.46
1678 1779 1.067199 CGTTGGCGGACACGTAGTAC 61.067 60.000 0.00 0.00 41.61 2.73
1746 1847 6.486056 GGAGAGATCCATCAGGTATACTACA 58.514 44.000 2.25 0.00 35.89 2.74
1748 1849 5.487845 TCGGAGAGATCCATCAGGTATACTA 59.512 44.000 2.25 0.00 35.89 1.82
1750 1851 4.396790 GTCGGAGAGATCCATCAGGTATAC 59.603 50.000 0.00 0.00 36.95 1.47
1751 1852 4.567958 GGTCGGAGAGATCCATCAGGTATA 60.568 50.000 0.00 0.00 36.95 1.47
1752 1853 3.426615 GTCGGAGAGATCCATCAGGTAT 58.573 50.000 0.00 0.00 36.95 2.73
1753 1854 2.489255 GGTCGGAGAGATCCATCAGGTA 60.489 54.545 0.00 0.00 36.95 3.08
1812 1922 5.508320 GGAGAAAATTTTACCGAACAAGGCA 60.508 40.000 2.75 0.00 33.69 4.75
1818 1928 4.156182 CAGCGGAGAAAATTTTACCGAAC 58.844 43.478 33.37 23.33 40.25 3.95
1823 1933 3.124636 TCTCGCAGCGGAGAAAATTTTAC 59.875 43.478 16.42 1.49 39.99 2.01
1826 1936 1.808411 TCTCGCAGCGGAGAAAATTT 58.192 45.000 16.42 0.00 39.99 1.82
2022 2133 2.702751 AATGAACGCGTCGTCACCCA 62.703 55.000 14.44 2.63 39.99 4.51
2041 2152 3.989817 CGTGTCATCAGTTCATCACTCAA 59.010 43.478 0.00 0.00 30.92 3.02
2046 2157 2.029110 TGAGCGTGTCATCAGTTCATCA 60.029 45.455 0.00 0.00 0.00 3.07
2104 2227 8.425577 AAAGGTGAACATCAGACTATATTTCG 57.574 34.615 0.00 0.00 0.00 3.46
2108 2231 8.200792 GTGAGAAAGGTGAACATCAGACTATAT 58.799 37.037 0.00 0.00 0.00 0.86
2183 2306 4.399303 CCTCCGCTAAATCCACATCTTTTT 59.601 41.667 0.00 0.00 0.00 1.94
2184 2307 3.947834 CCTCCGCTAAATCCACATCTTTT 59.052 43.478 0.00 0.00 0.00 2.27
2186 2309 2.505819 ACCTCCGCTAAATCCACATCTT 59.494 45.455 0.00 0.00 0.00 2.40
2187 2310 2.103263 GACCTCCGCTAAATCCACATCT 59.897 50.000 0.00 0.00 0.00 2.90
2188 2311 2.484889 GACCTCCGCTAAATCCACATC 58.515 52.381 0.00 0.00 0.00 3.06
2189 2312 1.141053 GGACCTCCGCTAAATCCACAT 59.859 52.381 0.00 0.00 0.00 3.21
2190 2313 0.539986 GGACCTCCGCTAAATCCACA 59.460 55.000 0.00 0.00 0.00 4.17
2228 2356 4.207698 TCAGGCCATACATACTTCCCTA 57.792 45.455 5.01 0.00 0.00 3.53
2230 2358 3.857157 TTCAGGCCATACATACTTCCC 57.143 47.619 5.01 0.00 0.00 3.97
2231 2359 4.137543 CCTTTCAGGCCATACATACTTCC 58.862 47.826 5.01 0.00 0.00 3.46
2296 2428 3.124921 CGGTTGGCGTGATGGGTC 61.125 66.667 0.00 0.00 0.00 4.46
2325 2465 0.528466 GATGCGAATCCACGAGCTCA 60.528 55.000 15.40 0.00 35.09 4.26
2358 2498 2.157085 GGTCAGAACACGAAATTCGACC 59.843 50.000 22.92 12.86 43.74 4.79
2359 2499 2.157085 GGGTCAGAACACGAAATTCGAC 59.843 50.000 22.92 7.45 43.74 4.20
2360 2500 2.036733 AGGGTCAGAACACGAAATTCGA 59.963 45.455 22.92 0.00 43.74 3.71
2361 2501 2.413837 AGGGTCAGAACACGAAATTCG 58.586 47.619 14.35 14.35 46.93 3.34
2362 2502 4.830826 AAAGGGTCAGAACACGAAATTC 57.169 40.909 0.00 0.00 32.44 2.17
2363 2503 5.588240 GAAAAAGGGTCAGAACACGAAATT 58.412 37.500 0.00 0.00 32.44 1.82
2364 2504 4.261031 CGAAAAAGGGTCAGAACACGAAAT 60.261 41.667 0.00 0.00 32.44 2.17
2365 2505 3.064271 CGAAAAAGGGTCAGAACACGAAA 59.936 43.478 0.00 0.00 32.44 3.46
2366 2506 2.610374 CGAAAAAGGGTCAGAACACGAA 59.390 45.455 0.00 0.00 32.44 3.85
2367 2507 2.159071 TCGAAAAAGGGTCAGAACACGA 60.159 45.455 0.00 0.00 32.44 4.35
2368 2508 2.206750 TCGAAAAAGGGTCAGAACACG 58.793 47.619 0.00 0.00 32.44 4.49
2369 2509 4.753107 TGTATCGAAAAAGGGTCAGAACAC 59.247 41.667 0.00 0.00 0.00 3.32
2370 2510 4.963373 TGTATCGAAAAAGGGTCAGAACA 58.037 39.130 0.00 0.00 0.00 3.18
2371 2511 5.934935 TTGTATCGAAAAAGGGTCAGAAC 57.065 39.130 0.00 0.00 0.00 3.01
2372 2512 7.229707 TGAATTTGTATCGAAAAAGGGTCAGAA 59.770 33.333 0.00 0.00 0.00 3.02
2373 2513 6.712998 TGAATTTGTATCGAAAAAGGGTCAGA 59.287 34.615 0.00 0.00 0.00 3.27
2374 2514 6.908825 TGAATTTGTATCGAAAAAGGGTCAG 58.091 36.000 0.00 0.00 0.00 3.51
2375 2515 6.072175 CCTGAATTTGTATCGAAAAAGGGTCA 60.072 38.462 0.00 0.00 0.00 4.02
2376 2516 6.150474 TCCTGAATTTGTATCGAAAAAGGGTC 59.850 38.462 0.00 0.00 0.00 4.46
2377 2517 6.007703 TCCTGAATTTGTATCGAAAAAGGGT 58.992 36.000 0.00 0.00 0.00 4.34
2378 2518 6.509418 TCCTGAATTTGTATCGAAAAAGGG 57.491 37.500 0.00 0.00 0.00 3.95
2379 2519 8.863049 CAAATCCTGAATTTGTATCGAAAAAGG 58.137 33.333 0.00 0.00 46.12 3.11
2398 2538 1.702957 TCGAAACCAGGGTCAAATCCT 59.297 47.619 0.00 0.00 34.39 3.24
2399 2539 2.194201 TCGAAACCAGGGTCAAATCC 57.806 50.000 0.00 0.00 0.00 3.01
2400 2540 4.577834 TTTTCGAAACCAGGGTCAAATC 57.422 40.909 10.79 0.00 0.00 2.17
2401 2541 5.545063 AATTTTCGAAACCAGGGTCAAAT 57.455 34.783 10.79 0.00 0.00 2.32
2402 2542 5.346181 AAATTTTCGAAACCAGGGTCAAA 57.654 34.783 10.79 0.00 0.00 2.69
2403 2543 5.346181 AAAATTTTCGAAACCAGGGTCAA 57.654 34.783 10.79 0.00 0.00 3.18
2404 2544 4.939271 GAAAATTTTCGAAACCAGGGTCA 58.061 39.130 14.83 0.00 0.00 4.02
2417 2557 6.502136 AAGGGTCAGATCTCGAAAATTTTC 57.498 37.500 19.08 19.08 0.00 2.29
2418 2558 6.348540 CGAAAGGGTCAGATCTCGAAAATTTT 60.349 38.462 2.28 2.28 0.00 1.82
2419 2559 5.122396 CGAAAGGGTCAGATCTCGAAAATTT 59.878 40.000 0.00 0.00 0.00 1.82
2420 2560 4.631813 CGAAAGGGTCAGATCTCGAAAATT 59.368 41.667 0.00 0.00 0.00 1.82
2421 2561 4.184629 CGAAAGGGTCAGATCTCGAAAAT 58.815 43.478 0.00 0.00 0.00 1.82
2422 2562 3.585862 CGAAAGGGTCAGATCTCGAAAA 58.414 45.455 0.00 0.00 0.00 2.29
2423 2563 2.674177 GCGAAAGGGTCAGATCTCGAAA 60.674 50.000 0.00 0.00 0.00 3.46
2424 2564 1.135083 GCGAAAGGGTCAGATCTCGAA 60.135 52.381 0.00 0.00 0.00 3.71
2425 2565 0.456221 GCGAAAGGGTCAGATCTCGA 59.544 55.000 0.00 0.00 0.00 4.04
2426 2566 0.457851 AGCGAAAGGGTCAGATCTCG 59.542 55.000 0.00 0.00 0.00 4.04
2427 2567 2.223852 GGTAGCGAAAGGGTCAGATCTC 60.224 54.545 0.00 0.00 0.00 2.75
2428 2568 1.757699 GGTAGCGAAAGGGTCAGATCT 59.242 52.381 0.00 0.00 0.00 2.75
2429 2569 1.536284 CGGTAGCGAAAGGGTCAGATC 60.536 57.143 9.07 0.00 0.00 2.75
2430 2570 0.460311 CGGTAGCGAAAGGGTCAGAT 59.540 55.000 9.07 0.00 0.00 2.90
2431 2571 0.896940 ACGGTAGCGAAAGGGTCAGA 60.897 55.000 22.88 0.00 0.00 3.27
2432 2572 0.037605 AACGGTAGCGAAAGGGTCAG 60.038 55.000 22.88 0.00 0.00 3.51
2433 2573 1.067635 GTAACGGTAGCGAAAGGGTCA 60.068 52.381 22.88 0.00 0.00 4.02
2434 2574 1.067635 TGTAACGGTAGCGAAAGGGTC 60.068 52.381 22.88 4.67 0.00 4.46
2435 2575 0.968405 TGTAACGGTAGCGAAAGGGT 59.032 50.000 22.88 0.00 0.00 4.34
2436 2576 1.636988 CTGTAACGGTAGCGAAAGGG 58.363 55.000 22.88 4.29 0.00 3.95
2437 2577 1.067354 ACCTGTAACGGTAGCGAAAGG 60.067 52.381 22.88 20.89 34.94 3.11
2438 2578 2.358939 ACCTGTAACGGTAGCGAAAG 57.641 50.000 22.88 11.58 34.94 2.62
2439 2579 2.818130 AACCTGTAACGGTAGCGAAA 57.182 45.000 22.88 5.25 35.89 3.46
2440 2580 2.801679 CAAAACCTGTAACGGTAGCGAA 59.198 45.455 22.88 5.64 35.89 4.70
2441 2581 2.406130 CAAAACCTGTAACGGTAGCGA 58.594 47.619 22.88 0.00 35.89 4.93
2442 2582 1.461897 CCAAAACCTGTAACGGTAGCG 59.538 52.381 13.69 13.69 35.89 4.26
2443 2583 1.198408 GCCAAAACCTGTAACGGTAGC 59.802 52.381 0.00 0.00 35.89 3.58
2444 2584 1.461897 CGCCAAAACCTGTAACGGTAG 59.538 52.381 0.00 0.00 35.89 3.18
2445 2585 1.510776 CGCCAAAACCTGTAACGGTA 58.489 50.000 0.00 0.00 35.89 4.02
2446 2586 1.167781 CCGCCAAAACCTGTAACGGT 61.168 55.000 0.00 0.00 39.48 4.83
2447 2587 1.167781 ACCGCCAAAACCTGTAACGG 61.168 55.000 0.00 0.00 39.04 4.44
2448 2588 1.461897 CTACCGCCAAAACCTGTAACG 59.538 52.381 0.00 0.00 0.00 3.18
2449 2589 1.808343 CCTACCGCCAAAACCTGTAAC 59.192 52.381 0.00 0.00 0.00 2.50
2450 2590 1.271488 CCCTACCGCCAAAACCTGTAA 60.271 52.381 0.00 0.00 0.00 2.41
2451 2591 0.325602 CCCTACCGCCAAAACCTGTA 59.674 55.000 0.00 0.00 0.00 2.74
2452 2592 1.074248 CCCTACCGCCAAAACCTGT 59.926 57.895 0.00 0.00 0.00 4.00
2453 2593 0.538746 AACCCTACCGCCAAAACCTG 60.539 55.000 0.00 0.00 0.00 4.00
2454 2594 1.003928 CTAACCCTACCGCCAAAACCT 59.996 52.381 0.00 0.00 0.00 3.50
2455 2595 1.003464 TCTAACCCTACCGCCAAAACC 59.997 52.381 0.00 0.00 0.00 3.27
2456 2596 2.079158 GTCTAACCCTACCGCCAAAAC 58.921 52.381 0.00 0.00 0.00 2.43
2457 2597 1.698532 TGTCTAACCCTACCGCCAAAA 59.301 47.619 0.00 0.00 0.00 2.44
2458 2598 1.350071 TGTCTAACCCTACCGCCAAA 58.650 50.000 0.00 0.00 0.00 3.28
2459 2599 1.208535 CATGTCTAACCCTACCGCCAA 59.791 52.381 0.00 0.00 0.00 4.52
2460 2600 0.828022 CATGTCTAACCCTACCGCCA 59.172 55.000 0.00 0.00 0.00 5.69
2461 2601 0.532196 GCATGTCTAACCCTACCGCC 60.532 60.000 0.00 0.00 0.00 6.13
2462 2602 0.464452 AGCATGTCTAACCCTACCGC 59.536 55.000 0.00 0.00 0.00 5.68
2463 2603 2.035576 GGTAGCATGTCTAACCCTACCG 59.964 54.545 7.43 0.00 38.82 4.02
2464 2604 2.035576 CGGTAGCATGTCTAACCCTACC 59.964 54.545 11.40 11.40 42.80 3.18
2465 2605 2.545322 GCGGTAGCATGTCTAACCCTAC 60.545 54.545 6.62 2.40 44.35 3.18
2466 2606 1.684983 GCGGTAGCATGTCTAACCCTA 59.315 52.381 6.62 0.00 44.35 3.53
2467 2607 0.464452 GCGGTAGCATGTCTAACCCT 59.536 55.000 6.62 0.00 44.35 4.34
2468 2608 2.987752 GCGGTAGCATGTCTAACCC 58.012 57.895 6.62 1.98 44.35 4.11
2474 2614 3.031417 ACCCTGGCGGTAGCATGTC 62.031 63.158 0.00 0.00 45.97 3.06
2475 2615 3.009115 ACCCTGGCGGTAGCATGT 61.009 61.111 0.00 0.00 45.97 3.21
2488 2628 4.798682 CCTACCGCCAGGGACCCT 62.799 72.222 7.44 7.44 43.47 4.34
2495 2635 4.814294 GTCGCACCCTACCGCCAG 62.814 72.222 0.00 0.00 0.00 4.85
2499 2639 4.189188 CTCCGTCGCACCCTACCG 62.189 72.222 0.00 0.00 0.00 4.02
2500 2640 3.834799 CCTCCGTCGCACCCTACC 61.835 72.222 0.00 0.00 0.00 3.18
2501 2641 3.834799 CCCTCCGTCGCACCCTAC 61.835 72.222 0.00 0.00 0.00 3.18
2528 2668 3.055719 ATCAGCACGGGCAAACGG 61.056 61.111 14.57 0.00 44.61 4.44
2529 2669 2.176546 CATCAGCACGGGCAAACG 59.823 61.111 14.57 0.00 44.61 3.60
2530 2670 1.081242 CACATCAGCACGGGCAAAC 60.081 57.895 14.57 0.00 44.61 2.93
2531 2671 2.267351 CCACATCAGCACGGGCAAA 61.267 57.895 14.57 0.00 44.61 3.68
2532 2672 2.672651 CCACATCAGCACGGGCAA 60.673 61.111 14.57 0.00 44.61 4.52
2533 2673 3.635191 TCCACATCAGCACGGGCA 61.635 61.111 14.57 0.00 44.61 5.36
2534 2674 3.127533 GTCCACATCAGCACGGGC 61.128 66.667 0.00 0.00 41.61 6.13
2535 2675 1.300971 CTTGTCCACATCAGCACGGG 61.301 60.000 0.00 0.00 0.00 5.28
2536 2676 0.603707 ACTTGTCCACATCAGCACGG 60.604 55.000 0.00 0.00 0.00 4.94
2537 2677 1.995484 CTACTTGTCCACATCAGCACG 59.005 52.381 0.00 0.00 0.00 5.34
2538 2678 1.734465 GCTACTTGTCCACATCAGCAC 59.266 52.381 0.00 0.00 0.00 4.40
2539 2679 1.339055 GGCTACTTGTCCACATCAGCA 60.339 52.381 8.91 0.00 0.00 4.41
2540 2680 1.065854 AGGCTACTTGTCCACATCAGC 60.066 52.381 0.00 0.00 0.00 4.26
2541 2681 3.430929 GGTAGGCTACTTGTCCACATCAG 60.431 52.174 23.01 0.00 0.00 2.90
2542 2682 2.500098 GGTAGGCTACTTGTCCACATCA 59.500 50.000 23.01 0.00 0.00 3.07
2543 2683 2.481449 CGGTAGGCTACTTGTCCACATC 60.481 54.545 23.01 2.78 0.00 3.06
2544 2684 1.480954 CGGTAGGCTACTTGTCCACAT 59.519 52.381 23.01 0.00 0.00 3.21
2545 2685 0.892755 CGGTAGGCTACTTGTCCACA 59.107 55.000 23.01 0.00 0.00 4.17
2546 2686 0.459759 GCGGTAGGCTACTTGTCCAC 60.460 60.000 23.01 4.86 39.11 4.02
2547 2687 1.610554 GGCGGTAGGCTACTTGTCCA 61.611 60.000 23.01 0.00 42.94 4.02
2548 2688 1.143401 GGCGGTAGGCTACTTGTCC 59.857 63.158 23.01 16.07 42.94 4.02
2549 2689 0.179108 CTGGCGGTAGGCTACTTGTC 60.179 60.000 23.01 17.42 44.18 3.18
2550 2690 1.614241 CCTGGCGGTAGGCTACTTGT 61.614 60.000 23.01 0.00 44.18 3.16
2551 2691 1.144057 CCTGGCGGTAGGCTACTTG 59.856 63.158 23.01 16.68 44.18 3.16
2552 2692 2.064581 CCCTGGCGGTAGGCTACTT 61.065 63.158 23.01 0.00 44.18 2.24
2553 2693 2.444140 CCCTGGCGGTAGGCTACT 60.444 66.667 23.01 0.00 44.18 2.57
2554 2694 2.443390 TCCCTGGCGGTAGGCTAC 60.443 66.667 16.40 16.40 44.18 3.58
2555 2695 2.443390 GTCCCTGGCGGTAGGCTA 60.443 66.667 0.00 0.00 44.18 3.93
2558 2698 4.798682 AGGGTCCCTGGCGGTAGG 62.799 72.222 10.61 0.00 37.59 3.18
2572 2712 0.107410 TTAACATGCTACCGCCAGGG 60.107 55.000 0.00 0.00 43.47 4.45
2573 2713 1.400494 GTTTAACATGCTACCGCCAGG 59.600 52.381 0.00 0.00 45.13 4.45
2574 2714 1.400494 GGTTTAACATGCTACCGCCAG 59.600 52.381 0.00 0.00 34.43 4.85
2575 2715 1.003812 AGGTTTAACATGCTACCGCCA 59.996 47.619 0.00 0.00 35.80 5.69
2576 2716 1.746470 AGGTTTAACATGCTACCGCC 58.254 50.000 0.00 0.00 35.80 6.13
2577 2717 3.064408 GGTAAGGTTTAACATGCTACCGC 59.936 47.826 0.00 0.00 35.80 5.68
2578 2718 3.307782 CGGTAAGGTTTAACATGCTACCG 59.692 47.826 15.29 15.29 41.19 4.02
2579 2719 3.064408 GCGGTAAGGTTTAACATGCTACC 59.936 47.826 0.00 0.00 0.00 3.18
2580 2720 3.064408 GGCGGTAAGGTTTAACATGCTAC 59.936 47.826 0.00 0.00 0.00 3.58
2581 2721 3.272581 GGCGGTAAGGTTTAACATGCTA 58.727 45.455 0.00 0.00 0.00 3.49
2582 2722 2.089201 GGCGGTAAGGTTTAACATGCT 58.911 47.619 0.00 0.00 0.00 3.79
2583 2723 1.813786 TGGCGGTAAGGTTTAACATGC 59.186 47.619 0.00 0.00 0.00 4.06
2584 2724 2.159435 GCTGGCGGTAAGGTTTAACATG 60.159 50.000 0.00 0.00 0.00 3.21
2585 2725 2.089201 GCTGGCGGTAAGGTTTAACAT 58.911 47.619 0.00 0.00 0.00 2.71
2586 2726 1.202782 TGCTGGCGGTAAGGTTTAACA 60.203 47.619 0.00 0.00 0.00 2.41
2587 2727 1.198408 GTGCTGGCGGTAAGGTTTAAC 59.802 52.381 0.00 0.00 0.00 2.01
2588 2728 1.525941 GTGCTGGCGGTAAGGTTTAA 58.474 50.000 0.00 0.00 0.00 1.52
2589 2729 0.321830 GGTGCTGGCGGTAAGGTTTA 60.322 55.000 0.00 0.00 0.00 2.01
2590 2730 1.602605 GGTGCTGGCGGTAAGGTTT 60.603 57.895 0.00 0.00 0.00 3.27
2591 2731 2.033602 GGTGCTGGCGGTAAGGTT 59.966 61.111 0.00 0.00 0.00 3.50
2592 2732 4.029809 GGGTGCTGGCGGTAAGGT 62.030 66.667 0.00 0.00 0.00 3.50
2594 2734 4.388499 ACGGGTGCTGGCGGTAAG 62.388 66.667 0.00 0.00 0.00 2.34
2595 2735 4.690719 CACGGGTGCTGGCGGTAA 62.691 66.667 0.00 0.00 0.00 2.85
2609 2749 0.672401 ATCCACACTTTACCGCCACG 60.672 55.000 0.00 0.00 0.00 4.94
2610 2750 0.802494 CATCCACACTTTACCGCCAC 59.198 55.000 0.00 0.00 0.00 5.01
2611 2751 0.322098 CCATCCACACTTTACCGCCA 60.322 55.000 0.00 0.00 0.00 5.69
2612 2752 1.029947 CCCATCCACACTTTACCGCC 61.030 60.000 0.00 0.00 0.00 6.13
2613 2753 1.029947 CCCCATCCACACTTTACCGC 61.030 60.000 0.00 0.00 0.00 5.68
2614 2754 1.029947 GCCCCATCCACACTTTACCG 61.030 60.000 0.00 0.00 0.00 4.02
2615 2755 0.331616 AGCCCCATCCACACTTTACC 59.668 55.000 0.00 0.00 0.00 2.85
2616 2756 2.215942 AAGCCCCATCCACACTTTAC 57.784 50.000 0.00 0.00 0.00 2.01
2617 2757 2.524306 CAAAGCCCCATCCACACTTTA 58.476 47.619 0.00 0.00 0.00 1.85
2618 2758 1.341080 CAAAGCCCCATCCACACTTT 58.659 50.000 0.00 0.00 0.00 2.66
2619 2759 1.187567 GCAAAGCCCCATCCACACTT 61.188 55.000 0.00 0.00 0.00 3.16
2620 2760 1.607467 GCAAAGCCCCATCCACACT 60.607 57.895 0.00 0.00 0.00 3.55
2621 2761 2.649129 GGCAAAGCCCCATCCACAC 61.649 63.158 0.00 0.00 44.06 3.82
2622 2762 2.283821 GGCAAAGCCCCATCCACA 60.284 61.111 0.00 0.00 44.06 4.17
2631 2771 8.207039 GTTACAGAAACTTTAGAAGGCAAAGCC 61.207 40.741 0.00 0.00 41.11 4.35
2632 2772 5.188327 ACAGAAACTTTAGAAGGCAAAGC 57.812 39.130 0.00 0.00 36.63 3.51
2633 2773 6.851330 CGTTACAGAAACTTTAGAAGGCAAAG 59.149 38.462 0.00 0.00 38.65 2.77
2634 2774 6.539464 TCGTTACAGAAACTTTAGAAGGCAAA 59.461 34.615 0.00 0.00 35.81 3.68
2635 2775 6.050432 TCGTTACAGAAACTTTAGAAGGCAA 58.950 36.000 0.00 0.00 35.81 4.52
2636 2776 5.603596 TCGTTACAGAAACTTTAGAAGGCA 58.396 37.500 0.00 0.00 35.81 4.75
2637 2777 6.723131 ATCGTTACAGAAACTTTAGAAGGC 57.277 37.500 0.00 0.00 35.81 4.35
2673 2813 3.366739 GAACGTACCTCCCGCCAGG 62.367 68.421 0.00 0.00 39.80 4.45
2674 2814 2.183555 GAACGTACCTCCCGCCAG 59.816 66.667 0.00 0.00 0.00 4.85
2675 2815 3.751246 CGAACGTACCTCCCGCCA 61.751 66.667 0.00 0.00 0.00 5.69
2676 2816 3.690108 GACGAACGTACCTCCCGCC 62.690 68.421 0.00 0.00 0.00 6.13
2677 2817 2.202531 GACGAACGTACCTCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
2678 2818 0.744414 TAGGACGAACGTACCTCCCG 60.744 60.000 16.64 0.00 35.52 5.14
2679 2819 0.735471 GTAGGACGAACGTACCTCCC 59.265 60.000 16.64 7.49 34.86 4.30
2684 2824 1.226407 GGCGGTAGGACGAACGTAC 60.226 63.158 0.95 0.95 38.61 3.67
2685 2825 1.647545 CTGGCGGTAGGACGAACGTA 61.648 60.000 0.00 0.00 35.47 3.57
2686 2826 2.985282 TGGCGGTAGGACGAACGT 60.985 61.111 0.00 0.00 35.47 3.99
2687 2827 2.202570 CTGGCGGTAGGACGAACG 60.203 66.667 0.00 0.00 35.47 3.95
2688 2828 2.183555 CCTGGCGGTAGGACGAAC 59.816 66.667 0.00 0.00 40.42 3.95
2689 2829 3.072468 CCCTGGCGGTAGGACGAA 61.072 66.667 0.00 0.00 40.42 3.85
2690 2830 4.371417 ACCCTGGCGGTAGGACGA 62.371 66.667 0.00 0.00 45.97 4.20
2701 2841 4.722700 CACCGCCAAGGACCCTGG 62.723 72.222 4.56 4.56 45.00 4.45
2702 2842 4.722700 CCACCGCCAAGGACCCTG 62.723 72.222 0.00 0.00 45.00 4.45
2704 2844 4.717313 GACCACCGCCAAGGACCC 62.717 72.222 0.00 0.00 45.00 4.46
2705 2845 4.717313 GGACCACCGCCAAGGACC 62.717 72.222 0.00 0.00 45.00 4.46
2706 2846 3.637273 AGGACCACCGCCAAGGAC 61.637 66.667 0.00 0.00 45.00 3.85
2707 2847 3.636231 CAGGACCACCGCCAAGGA 61.636 66.667 0.00 0.00 45.00 3.36
2709 2849 2.669569 CACAGGACCACCGCCAAG 60.670 66.667 0.00 0.00 41.83 3.61
2710 2850 2.559922 AAACACAGGACCACCGCCAA 62.560 55.000 0.00 0.00 41.83 4.52
2711 2851 2.559922 AAAACACAGGACCACCGCCA 62.560 55.000 0.00 0.00 41.83 5.69
2712 2852 0.535553 TAAAACACAGGACCACCGCC 60.536 55.000 0.00 0.00 41.83 6.13
2713 2853 1.199097 CATAAAACACAGGACCACCGC 59.801 52.381 0.00 0.00 41.83 5.68
2714 2854 1.810151 CCATAAAACACAGGACCACCG 59.190 52.381 0.00 0.00 41.83 4.94
2715 2855 2.871453 ACCATAAAACACAGGACCACC 58.129 47.619 0.00 0.00 0.00 4.61
2716 2856 4.929819 AAACCATAAAACACAGGACCAC 57.070 40.909 0.00 0.00 0.00 4.16
2717 2857 7.945664 ACTTATAAACCATAAAACACAGGACCA 59.054 33.333 0.00 0.00 0.00 4.02
2718 2858 8.344446 ACTTATAAACCATAAAACACAGGACC 57.656 34.615 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.