Multiple sequence alignment - TraesCS2B01G239700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G239700 chr2B 100.000 2820 0 0 1 2820 243831871 243829052 0.000000e+00 5208.0
1 TraesCS2B01G239700 chr2B 92.527 562 9 3 1 529 61110921 61111482 0.000000e+00 774.0
2 TraesCS2B01G239700 chr2B 98.578 211 3 0 319 529 138074865 138075075 9.540000e-100 374.0
3 TraesCS2B01G239700 chr2B 95.652 138 6 0 529 666 61111565 61111702 3.660000e-54 222.0
4 TraesCS2B01G239700 chr2B 87.179 195 25 0 1094 1288 243790829 243790635 3.660000e-54 222.0
5 TraesCS2B01G239700 chr2B 92.701 137 10 0 529 665 138075160 138075296 6.160000e-47 198.0
6 TraesCS2B01G239700 chr2A 93.337 1756 93 17 666 2413 200920583 200918844 0.000000e+00 2573.0
7 TraesCS2B01G239700 chr2A 88.718 195 22 0 1094 1288 200627162 200626968 3.630000e-59 239.0
8 TraesCS2B01G239700 chr2A 77.165 127 24 5 2637 2761 565236202 565236325 5.040000e-08 69.4
9 TraesCS2B01G239700 chr2A 100.000 32 0 0 2635 2666 733797981 733798012 3.030000e-05 60.2
10 TraesCS2B01G239700 chr2D 94.708 1474 56 11 666 2130 187970239 187968779 0.000000e+00 2270.0
11 TraesCS2B01G239700 chr2D 87.190 242 17 3 2162 2403 187967388 187967161 2.150000e-66 263.0
12 TraesCS2B01G239700 chr2D 88.718 195 22 0 1094 1288 187648546 187648352 3.630000e-59 239.0
13 TraesCS2B01G239700 chr2D 82.192 73 12 1 2635 2707 537004248 537004319 8.430000e-06 62.1
14 TraesCS2B01G239700 chr6B 97.615 671 13 3 1 668 597996875 597997545 0.000000e+00 1147.0
15 TraesCS2B01G239700 chr6B 82.197 264 44 2 1084 1346 256480083 256479822 1.020000e-54 224.0
16 TraesCS2B01G239700 chr6B 93.860 114 7 0 531 644 710283635 710283522 3.730000e-39 172.0
17 TraesCS2B01G239700 chr6B 83.212 137 17 4 1520 1650 256479776 256479640 1.370000e-23 121.0
18 TraesCS2B01G239700 chr5B 95.748 682 12 3 2 666 590079539 590078858 0.000000e+00 1083.0
19 TraesCS2B01G239700 chr5B 88.704 540 46 9 1 529 377679858 377680393 0.000000e+00 645.0
20 TraesCS2B01G239700 chr3B 97.921 529 8 3 3 529 685822298 685821771 0.000000e+00 913.0
21 TraesCS2B01G239700 chr3B 89.858 562 22 16 1 529 773713643 773713084 0.000000e+00 689.0
22 TraesCS2B01G239700 chr3B 85.672 677 64 16 1 665 542917850 542917195 0.000000e+00 682.0
23 TraesCS2B01G239700 chr3B 96.350 137 5 0 529 665 685821688 685821552 2.830000e-55 226.0
24 TraesCS2B01G239700 chr3B 95.385 130 6 0 531 660 773712999 773712870 1.020000e-49 207.0
25 TraesCS2B01G239700 chr5D 88.929 560 26 18 2 529 439320210 439320765 0.000000e+00 658.0
26 TraesCS2B01G239700 chr5D 94.161 137 7 1 529 665 439320848 439320983 1.020000e-49 207.0
27 TraesCS2B01G239700 chr1A 89.077 531 43 9 1 521 581738537 581739062 0.000000e+00 645.0
28 TraesCS2B01G239700 chr1A 100.000 32 0 0 2635 2666 321108016 321108047 3.030000e-05 60.2
29 TraesCS2B01G239700 chr1B 81.509 265 44 4 1084 1346 169641180 169640919 2.200000e-51 213.0
30 TraesCS2B01G239700 chr1B 82.482 137 18 4 1520 1650 169640873 169640737 6.380000e-22 115.0
31 TraesCS2B01G239700 chr6D 92.701 137 10 0 529 665 350115670 350115806 6.160000e-47 198.0
32 TraesCS2B01G239700 chr4B 90.076 131 13 0 1154 1284 41743730 41743860 1.340000e-38 171.0
33 TraesCS2B01G239700 chr7D 85.276 163 20 3 1154 1313 598485580 598485419 6.250000e-37 165.0
34 TraesCS2B01G239700 chr7B 83.448 145 21 2 1073 1216 146004980 146005122 6.340000e-27 132.0
35 TraesCS2B01G239700 chr7B 79.114 158 28 4 1264 1418 146005140 146005295 1.380000e-18 104.0
36 TraesCS2B01G239700 chr7A 87.500 64 7 1 2635 2697 730600150 730600213 3.900000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G239700 chr2B 243829052 243831871 2819 True 5208.0 5208 100.0000 1 2820 1 chr2B.!!$R2 2819
1 TraesCS2B01G239700 chr2B 61110921 61111702 781 False 498.0 774 94.0895 1 666 2 chr2B.!!$F1 665
2 TraesCS2B01G239700 chr2A 200918844 200920583 1739 True 2573.0 2573 93.3370 666 2413 1 chr2A.!!$R2 1747
3 TraesCS2B01G239700 chr2D 187967161 187970239 3078 True 1266.5 2270 90.9490 666 2403 2 chr2D.!!$R2 1737
4 TraesCS2B01G239700 chr6B 597996875 597997545 670 False 1147.0 1147 97.6150 1 668 1 chr6B.!!$F1 667
5 TraesCS2B01G239700 chr5B 590078858 590079539 681 True 1083.0 1083 95.7480 2 666 1 chr5B.!!$R1 664
6 TraesCS2B01G239700 chr5B 377679858 377680393 535 False 645.0 645 88.7040 1 529 1 chr5B.!!$F1 528
7 TraesCS2B01G239700 chr3B 542917195 542917850 655 True 682.0 682 85.6720 1 665 1 chr3B.!!$R1 664
8 TraesCS2B01G239700 chr3B 685821552 685822298 746 True 569.5 913 97.1355 3 665 2 chr3B.!!$R2 662
9 TraesCS2B01G239700 chr3B 773712870 773713643 773 True 448.0 689 92.6215 1 660 2 chr3B.!!$R3 659
10 TraesCS2B01G239700 chr5D 439320210 439320983 773 False 432.5 658 91.5450 2 665 2 chr5D.!!$F1 663
11 TraesCS2B01G239700 chr1A 581738537 581739062 525 False 645.0 645 89.0770 1 521 1 chr1A.!!$F2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 991 1.474077 CCAAGCACCCATCTTTACTGC 59.526 52.381 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 4097 0.101399 CAAGGATCGCAGCGACTAGT 59.899 55.0 22.28 3.38 39.18 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
545 833 2.976692 TATCTGAGCGCCATGGCACG 62.977 60.000 34.93 21.32 42.06 5.34
702 991 1.474077 CCAAGCACCCATCTTTACTGC 59.526 52.381 0.00 0.00 0.00 4.40
735 1024 1.841277 ACCGACAAGTGGGCCATATAA 59.159 47.619 10.70 0.00 30.95 0.98
791 1080 4.361971 AGACCTGGACTCCCGCGA 62.362 66.667 8.23 0.00 34.29 5.87
816 1105 2.033372 TCCAAAACGAAAACCTTCCCC 58.967 47.619 0.00 0.00 0.00 4.81
820 1109 3.428282 CGAAAACCTTCCCCCGCG 61.428 66.667 0.00 0.00 0.00 6.46
1191 1488 3.781307 CCCGTGGGAAGGATCGCA 61.781 66.667 0.00 0.00 45.25 5.10
1313 1610 2.308722 GGGTCTCATCCTTGCCCCA 61.309 63.158 0.00 0.00 33.40 4.96
1320 1617 0.622665 CATCCTTGCCCCAGTTCTCT 59.377 55.000 0.00 0.00 0.00 3.10
1347 1644 3.728076 TCTATTCCTTGATCCGGTTCG 57.272 47.619 0.00 0.00 0.00 3.95
1428 1725 0.927537 TAGCAATGCGTCGAAATCGG 59.072 50.000 0.00 0.00 40.29 4.18
1468 1765 8.098286 TCCAAATTCGTCAAGATAAGGTTTCTA 58.902 33.333 0.00 0.00 0.00 2.10
1474 1771 5.337330 CGTCAAGATAAGGTTTCTAGGGTGT 60.337 44.000 0.00 0.00 0.00 4.16
1513 1810 5.072055 TCCTATGTATCCATTGCATTGGTG 58.928 41.667 23.40 4.98 37.03 4.17
1540 1837 4.425520 CTTGTTCTAATCTGGTCGTCCTC 58.574 47.826 0.00 0.00 34.23 3.71
1550 1847 1.295746 GTCGTCCTCCCCCTTTGAC 59.704 63.158 0.00 0.00 0.00 3.18
1558 1855 1.852626 CCCCCTTTGACCCAGGTCT 60.853 63.158 17.44 0.00 44.80 3.85
1662 1959 0.475906 AGGAGCTGACCAAGTTGCTT 59.524 50.000 0.00 0.00 33.96 3.91
1785 2082 1.002868 CAACTGAGGCCCTGACCTG 60.003 63.158 0.00 0.00 41.32 4.00
1787 2084 1.062488 AACTGAGGCCCTGACCTGTT 61.062 55.000 0.00 0.00 41.32 3.16
1818 2115 0.751277 CCGCCTGCACCATGGATTAA 60.751 55.000 21.47 0.00 0.00 1.40
1830 2127 6.107343 CACCATGGATTAAATTTGCATCACA 58.893 36.000 21.47 4.04 0.00 3.58
1853 2150 5.736486 AAAGACGAAGGAGTTTCTTGTTC 57.264 39.130 0.00 0.00 33.44 3.18
1854 2151 3.381949 AGACGAAGGAGTTTCTTGTTCG 58.618 45.455 0.00 0.00 44.29 3.95
1855 2152 3.175109 ACGAAGGAGTTTCTTGTTCGT 57.825 42.857 2.76 2.76 46.14 3.85
1857 2154 4.626321 CGAAGGAGTTTCTTGTTCGTAC 57.374 45.455 0.00 0.00 36.21 3.67
1914 2211 2.105821 CCGGATGGCTTGGTATTAGGAA 59.894 50.000 0.00 0.00 0.00 3.36
1920 2217 7.013846 CGGATGGCTTGGTATTAGGAAAATTTA 59.986 37.037 0.00 0.00 0.00 1.40
1921 2218 8.360390 GGATGGCTTGGTATTAGGAAAATTTAG 58.640 37.037 0.00 0.00 0.00 1.85
1922 2219 8.838649 ATGGCTTGGTATTAGGAAAATTTAGT 57.161 30.769 0.00 0.00 0.00 2.24
2027 2325 2.224523 TGCTTGATCTTGTCCGGTTTCT 60.225 45.455 0.00 0.00 0.00 2.52
2032 2330 2.396590 TCTTGTCCGGTTTCTATGGC 57.603 50.000 0.00 0.00 0.00 4.40
2067 2365 7.927048 TGAAAGGAACTCAACTTTAAGCTTAC 58.073 34.615 5.45 0.00 38.49 2.34
2074 2372 8.741603 AACTCAACTTTAAGCTTACTACCAAA 57.258 30.769 5.45 0.00 0.00 3.28
2087 2385 6.037281 GCTTACTACCAAATTTGTAGCTCCTC 59.963 42.308 16.73 5.28 0.00 3.71
2088 2386 4.844884 ACTACCAAATTTGTAGCTCCTCC 58.155 43.478 16.73 0.00 0.00 4.30
2102 2400 2.030981 GCTCCTCCTTCTAATCGTACCG 60.031 54.545 0.00 0.00 0.00 4.02
2103 2401 3.212685 CTCCTCCTTCTAATCGTACCGT 58.787 50.000 0.00 0.00 0.00 4.83
2130 3771 2.827322 TGTTTTGCCTGAAGGATCCATG 59.173 45.455 15.82 0.35 37.39 3.66
2141 3782 5.223655 TGAAGGATCCATGGTGATAGGTTA 58.776 41.667 15.82 0.00 0.00 2.85
2142 3783 5.307976 TGAAGGATCCATGGTGATAGGTTAG 59.692 44.000 15.82 0.00 0.00 2.34
2239 3897 2.245806 CCAAGATCCATCCCCCTTTCTT 59.754 50.000 0.00 0.00 0.00 2.52
2243 3901 0.850883 TCCATCCCCCTTTCTTGGCT 60.851 55.000 0.00 0.00 0.00 4.75
2258 3916 3.122369 GGCTATGCAGGCTGGAATT 57.878 52.632 14.16 0.00 43.88 2.17
2413 4071 3.699067 GATCGTTGCATATGCTTGCTTT 58.301 40.909 27.13 8.97 43.18 3.51
2414 4072 4.552572 CGATCGTTGCATATGCTTGCTTTA 60.553 41.667 27.13 3.32 43.18 1.85
2415 4073 4.277257 TCGTTGCATATGCTTGCTTTAG 57.723 40.909 27.13 10.65 43.18 1.85
2416 4074 3.938334 TCGTTGCATATGCTTGCTTTAGA 59.062 39.130 27.13 12.52 43.18 2.10
2417 4075 4.031028 CGTTGCATATGCTTGCTTTAGAC 58.969 43.478 27.13 10.96 43.18 2.59
2418 4076 4.437255 CGTTGCATATGCTTGCTTTAGACA 60.437 41.667 27.13 0.47 43.18 3.41
2419 4077 5.401550 GTTGCATATGCTTGCTTTAGACAA 58.598 37.500 27.13 6.90 43.18 3.18
2420 4078 4.985413 TGCATATGCTTGCTTTAGACAAC 58.015 39.130 27.13 0.00 43.18 3.32
2421 4079 4.142403 TGCATATGCTTGCTTTAGACAACC 60.142 41.667 27.13 0.00 43.18 3.77
2422 4080 4.142403 GCATATGCTTGCTTTAGACAACCA 60.142 41.667 20.64 0.00 39.57 3.67
2423 4081 5.450965 GCATATGCTTGCTTTAGACAACCAT 60.451 40.000 20.64 0.00 39.57 3.55
2424 4082 4.708726 ATGCTTGCTTTAGACAACCATC 57.291 40.909 0.00 0.00 0.00 3.51
2425 4083 3.754965 TGCTTGCTTTAGACAACCATCT 58.245 40.909 0.00 0.00 0.00 2.90
2426 4084 3.503363 TGCTTGCTTTAGACAACCATCTG 59.497 43.478 0.00 0.00 0.00 2.90
2427 4085 3.503748 GCTTGCTTTAGACAACCATCTGT 59.496 43.478 0.00 0.00 0.00 3.41
2428 4086 4.695455 GCTTGCTTTAGACAACCATCTGTA 59.305 41.667 0.00 0.00 0.00 2.74
2429 4087 5.163814 GCTTGCTTTAGACAACCATCTGTAG 60.164 44.000 0.00 0.00 0.00 2.74
2430 4088 5.738619 TGCTTTAGACAACCATCTGTAGA 57.261 39.130 0.00 0.00 0.00 2.59
2431 4089 6.109156 TGCTTTAGACAACCATCTGTAGAA 57.891 37.500 0.00 0.00 0.00 2.10
2432 4090 5.932303 TGCTTTAGACAACCATCTGTAGAAC 59.068 40.000 0.00 0.00 0.00 3.01
2433 4091 5.062308 GCTTTAGACAACCATCTGTAGAACG 59.938 44.000 0.00 0.00 0.00 3.95
2434 4092 5.970317 TTAGACAACCATCTGTAGAACGA 57.030 39.130 0.00 0.00 0.00 3.85
2435 4093 4.866508 AGACAACCATCTGTAGAACGAA 57.133 40.909 0.00 0.00 0.00 3.85
2436 4094 4.810790 AGACAACCATCTGTAGAACGAAG 58.189 43.478 0.00 0.00 0.00 3.79
2438 4096 4.307432 ACAACCATCTGTAGAACGAAGTG 58.693 43.478 0.00 0.00 45.00 3.16
2439 4097 4.038763 ACAACCATCTGTAGAACGAAGTGA 59.961 41.667 0.00 0.00 45.00 3.41
2440 4098 4.175787 ACCATCTGTAGAACGAAGTGAC 57.824 45.455 0.00 0.00 45.00 3.67
2441 4099 3.827302 ACCATCTGTAGAACGAAGTGACT 59.173 43.478 0.00 0.00 45.00 3.41
2442 4100 5.008331 ACCATCTGTAGAACGAAGTGACTA 58.992 41.667 0.00 0.00 45.00 2.59
2443 4101 5.124138 ACCATCTGTAGAACGAAGTGACTAG 59.876 44.000 0.00 0.00 45.00 2.57
2444 4102 5.124138 CCATCTGTAGAACGAAGTGACTAGT 59.876 44.000 0.00 0.00 45.00 2.57
2445 4103 5.859521 TCTGTAGAACGAAGTGACTAGTC 57.140 43.478 16.32 16.32 45.00 2.59
2446 4104 4.388165 TCTGTAGAACGAAGTGACTAGTCG 59.612 45.833 17.85 8.76 45.00 4.18
2447 4105 2.615489 AGAACGAAGTGACTAGTCGC 57.385 50.000 25.71 25.71 45.00 5.19
2454 4112 2.861375 GTGACTAGTCGCTGCGATC 58.139 57.895 28.51 20.67 38.42 3.69
2455 4113 0.592754 GTGACTAGTCGCTGCGATCC 60.593 60.000 28.51 16.07 38.42 3.36
2456 4114 0.748367 TGACTAGTCGCTGCGATCCT 60.748 55.000 28.51 22.22 38.42 3.24
2457 4115 0.382515 GACTAGTCGCTGCGATCCTT 59.617 55.000 28.51 15.74 38.42 3.36
2458 4116 0.101399 ACTAGTCGCTGCGATCCTTG 59.899 55.000 28.51 21.92 38.42 3.61
2459 4117 0.596083 CTAGTCGCTGCGATCCTTGG 60.596 60.000 28.51 12.05 38.42 3.61
2460 4118 2.629050 TAGTCGCTGCGATCCTTGGC 62.629 60.000 28.51 13.02 38.42 4.52
2461 4119 4.081185 TCGCTGCGATCCTTGGCA 62.081 61.111 22.24 0.00 35.14 4.92
2464 4122 3.494378 CTGCGATCCTTGGCAGTG 58.506 61.111 11.02 0.00 46.24 3.66
2465 4123 2.046023 TGCGATCCTTGGCAGTGG 60.046 61.111 2.66 2.66 32.36 4.00
2466 4124 2.268920 GCGATCCTTGGCAGTGGA 59.731 61.111 12.56 12.56 36.72 4.02
2467 4125 1.817099 GCGATCCTTGGCAGTGGAG 60.817 63.158 14.86 5.76 35.63 3.86
2468 4126 1.153289 CGATCCTTGGCAGTGGAGG 60.153 63.158 14.86 6.99 35.63 4.30
2469 4127 1.903877 CGATCCTTGGCAGTGGAGGT 61.904 60.000 14.86 1.96 35.63 3.85
2470 4128 1.204146 GATCCTTGGCAGTGGAGGTA 58.796 55.000 14.86 0.00 35.63 3.08
2471 4129 1.139853 GATCCTTGGCAGTGGAGGTAG 59.860 57.143 14.86 0.00 35.63 3.18
2472 4130 0.116342 TCCTTGGCAGTGGAGGTAGA 59.884 55.000 7.14 0.00 32.33 2.59
2473 4131 1.207791 CCTTGGCAGTGGAGGTAGAT 58.792 55.000 2.91 0.00 0.00 1.98
2474 4132 1.134280 CCTTGGCAGTGGAGGTAGATG 60.134 57.143 2.91 0.00 0.00 2.90
2475 4133 0.253044 TTGGCAGTGGAGGTAGATGC 59.747 55.000 0.00 0.00 36.16 3.91
2476 4134 0.909133 TGGCAGTGGAGGTAGATGCA 60.909 55.000 0.00 0.00 38.63 3.96
2477 4135 0.471617 GGCAGTGGAGGTAGATGCAT 59.528 55.000 0.00 0.00 38.63 3.96
2478 4136 1.590932 GCAGTGGAGGTAGATGCATG 58.409 55.000 2.46 0.00 36.88 4.06
2479 4137 1.139654 GCAGTGGAGGTAGATGCATGA 59.860 52.381 2.46 0.00 36.88 3.07
2480 4138 2.831333 CAGTGGAGGTAGATGCATGAC 58.169 52.381 2.46 1.20 0.00 3.06
2481 4139 1.410517 AGTGGAGGTAGATGCATGACG 59.589 52.381 2.46 0.00 0.00 4.35
2482 4140 0.752658 TGGAGGTAGATGCATGACGG 59.247 55.000 2.46 0.00 0.00 4.79
2483 4141 1.040646 GGAGGTAGATGCATGACGGA 58.959 55.000 2.46 0.00 0.00 4.69
2484 4142 1.269831 GGAGGTAGATGCATGACGGAC 60.270 57.143 2.46 0.00 0.00 4.79
2485 4143 0.385751 AGGTAGATGCATGACGGACG 59.614 55.000 2.46 0.00 0.00 4.79
2486 4144 0.384309 GGTAGATGCATGACGGACGA 59.616 55.000 2.46 0.00 0.00 4.20
2487 4145 1.202371 GGTAGATGCATGACGGACGAA 60.202 52.381 2.46 0.00 0.00 3.85
2488 4146 2.120232 GTAGATGCATGACGGACGAAG 58.880 52.381 2.46 0.00 0.00 3.79
2513 4171 3.501396 GCATGGCATACTGCGTGT 58.499 55.556 0.00 0.00 46.21 4.49
2514 4172 1.063006 GCATGGCATACTGCGTGTG 59.937 57.895 0.00 2.11 46.21 3.82
2515 4173 1.647545 GCATGGCATACTGCGTGTGT 61.648 55.000 0.00 0.00 46.21 3.72
2516 4174 0.374758 CATGGCATACTGCGTGTGTC 59.625 55.000 0.00 3.80 46.21 3.67
2517 4175 0.250234 ATGGCATACTGCGTGTGTCT 59.750 50.000 0.00 0.00 46.21 3.41
2518 4176 0.670239 TGGCATACTGCGTGTGTCTG 60.670 55.000 10.22 0.00 46.21 3.51
2519 4177 1.421485 GCATACTGCGTGTGTCTGC 59.579 57.895 7.12 0.00 31.71 4.26
2520 4178 1.704010 CATACTGCGTGTGTCTGCG 59.296 57.895 0.00 0.00 0.00 5.18
2525 4183 3.947841 GCGTGTGTCTGCGCCAAA 61.948 61.111 4.18 0.00 46.93 3.28
2526 4184 2.712539 CGTGTGTCTGCGCCAAAA 59.287 55.556 4.18 0.00 0.00 2.44
2527 4185 1.063327 CGTGTGTCTGCGCCAAAAA 59.937 52.632 4.18 0.00 0.00 1.94
2528 4186 0.317770 CGTGTGTCTGCGCCAAAAAT 60.318 50.000 4.18 0.00 0.00 1.82
2529 4187 1.408422 GTGTGTCTGCGCCAAAAATC 58.592 50.000 4.18 0.00 0.00 2.17
2530 4188 0.040514 TGTGTCTGCGCCAAAAATCG 60.041 50.000 4.18 0.00 0.00 3.34
2531 4189 0.237235 GTGTCTGCGCCAAAAATCGA 59.763 50.000 4.18 0.00 0.00 3.59
2532 4190 0.516877 TGTCTGCGCCAAAAATCGAG 59.483 50.000 4.18 0.00 0.00 4.04
2533 4191 0.517316 GTCTGCGCCAAAAATCGAGT 59.483 50.000 4.18 0.00 0.00 4.18
2534 4192 1.730064 GTCTGCGCCAAAAATCGAGTA 59.270 47.619 4.18 0.00 0.00 2.59
2535 4193 2.158841 GTCTGCGCCAAAAATCGAGTAA 59.841 45.455 4.18 0.00 0.00 2.24
2536 4194 3.006940 TCTGCGCCAAAAATCGAGTAAT 58.993 40.909 4.18 0.00 0.00 1.89
2537 4195 3.063452 TCTGCGCCAAAAATCGAGTAATC 59.937 43.478 4.18 0.00 0.00 1.75
2538 4196 2.222931 TGCGCCAAAAATCGAGTAATCG 60.223 45.455 6.17 6.17 0.00 3.34
2539 4197 2.029970 GCGCCAAAAATCGAGTAATCGA 59.970 45.455 18.39 18.39 46.58 3.59
2540 4198 3.594312 CGCCAAAAATCGAGTAATCGAC 58.406 45.455 18.46 2.23 45.30 4.20
2541 4199 3.594312 GCCAAAAATCGAGTAATCGACG 58.406 45.455 18.46 4.34 45.30 5.12
2542 4200 3.543460 GCCAAAAATCGAGTAATCGACGG 60.543 47.826 18.46 13.60 45.30 4.79
2543 4201 3.543460 CCAAAAATCGAGTAATCGACGGC 60.543 47.826 18.46 0.00 45.30 5.68
2544 4202 2.865343 AAATCGAGTAATCGACGGCT 57.135 45.000 18.46 0.00 45.30 5.52
2545 4203 2.402640 AATCGAGTAATCGACGGCTC 57.597 50.000 18.46 0.00 45.30 4.70
2546 4204 1.306148 ATCGAGTAATCGACGGCTCA 58.694 50.000 18.46 0.00 45.30 4.26
2547 4205 0.656259 TCGAGTAATCGACGGCTCAG 59.344 55.000 11.80 5.61 37.20 3.35
2548 4206 0.317103 CGAGTAATCGACGGCTCAGG 60.317 60.000 6.77 0.00 34.64 3.86
2549 4207 0.739561 GAGTAATCGACGGCTCAGGT 59.260 55.000 0.00 0.00 0.00 4.00
2550 4208 0.456221 AGTAATCGACGGCTCAGGTG 59.544 55.000 0.00 0.00 0.00 4.00
2551 4209 0.172803 GTAATCGACGGCTCAGGTGT 59.827 55.000 0.00 0.00 0.00 4.16
2552 4210 0.172578 TAATCGACGGCTCAGGTGTG 59.827 55.000 0.00 0.00 0.00 3.82
2553 4211 2.507110 AATCGACGGCTCAGGTGTGG 62.507 60.000 0.00 0.00 0.00 4.17
2559 4217 4.357947 GCTCAGGTGTGGCGTCGA 62.358 66.667 0.00 0.00 0.00 4.20
2560 4218 2.430921 CTCAGGTGTGGCGTCGAC 60.431 66.667 5.18 5.18 0.00 4.20
2561 4219 4.337060 TCAGGTGTGGCGTCGACG 62.337 66.667 32.57 32.57 43.27 5.12
2573 4231 4.456253 TCGACGCGACCGCTCTTC 62.456 66.667 15.93 0.00 39.32 2.87
2577 4235 4.856607 CGCGACCGCTCTTCCCTC 62.857 72.222 12.69 0.00 39.32 4.30
2578 4236 4.856607 GCGACCGCTCTTCCCTCG 62.857 72.222 7.19 0.00 38.26 4.63
2579 4237 3.132139 CGACCGCTCTTCCCTCGA 61.132 66.667 0.00 0.00 0.00 4.04
2580 4238 2.490685 GACCGCTCTTCCCTCGAC 59.509 66.667 0.00 0.00 0.00 4.20
2581 4239 3.398353 GACCGCTCTTCCCTCGACG 62.398 68.421 0.00 0.00 0.00 5.12
2582 4240 3.441290 CCGCTCTTCCCTCGACGT 61.441 66.667 0.00 0.00 0.00 4.34
2583 4241 2.202492 CGCTCTTCCCTCGACGTG 60.202 66.667 0.00 0.00 0.00 4.49
2584 4242 2.963371 GCTCTTCCCTCGACGTGT 59.037 61.111 0.00 0.00 0.00 4.49
2585 4243 1.642037 CGCTCTTCCCTCGACGTGTA 61.642 60.000 0.00 0.00 0.00 2.90
2586 4244 0.739561 GCTCTTCCCTCGACGTGTAT 59.260 55.000 0.00 0.00 0.00 2.29
2587 4245 1.268640 GCTCTTCCCTCGACGTGTATC 60.269 57.143 0.00 0.00 0.00 2.24
2588 4246 2.290464 CTCTTCCCTCGACGTGTATCT 58.710 52.381 0.00 0.00 0.00 1.98
2589 4247 2.683867 CTCTTCCCTCGACGTGTATCTT 59.316 50.000 0.00 0.00 0.00 2.40
2590 4248 3.875727 CTCTTCCCTCGACGTGTATCTTA 59.124 47.826 0.00 0.00 0.00 2.10
2591 4249 4.458397 TCTTCCCTCGACGTGTATCTTAT 58.542 43.478 0.00 0.00 0.00 1.73
2592 4250 4.885907 TCTTCCCTCGACGTGTATCTTATT 59.114 41.667 0.00 0.00 0.00 1.40
2593 4251 4.825546 TCCCTCGACGTGTATCTTATTC 57.174 45.455 0.00 0.00 0.00 1.75
2594 4252 3.567164 TCCCTCGACGTGTATCTTATTCC 59.433 47.826 0.00 0.00 0.00 3.01
2595 4253 3.317149 CCCTCGACGTGTATCTTATTCCA 59.683 47.826 0.00 0.00 0.00 3.53
2596 4254 4.288531 CCTCGACGTGTATCTTATTCCAC 58.711 47.826 0.00 0.00 0.00 4.02
2597 4255 4.288531 CTCGACGTGTATCTTATTCCACC 58.711 47.826 0.00 0.00 0.00 4.61
2598 4256 3.040795 CGACGTGTATCTTATTCCACCG 58.959 50.000 0.00 0.00 0.00 4.94
2599 4257 3.378339 GACGTGTATCTTATTCCACCGG 58.622 50.000 0.00 0.00 0.00 5.28
2600 4258 2.132762 CGTGTATCTTATTCCACCGGC 58.867 52.381 0.00 0.00 0.00 6.13
2601 4259 2.223971 CGTGTATCTTATTCCACCGGCT 60.224 50.000 0.00 0.00 0.00 5.52
2602 4260 3.391049 GTGTATCTTATTCCACCGGCTC 58.609 50.000 0.00 0.00 0.00 4.70
2603 4261 2.367567 TGTATCTTATTCCACCGGCTCC 59.632 50.000 0.00 0.00 0.00 4.70
2604 4262 1.507140 ATCTTATTCCACCGGCTCCA 58.493 50.000 0.00 0.00 0.00 3.86
2605 4263 1.507140 TCTTATTCCACCGGCTCCAT 58.493 50.000 0.00 0.00 0.00 3.41
2606 4264 1.140852 TCTTATTCCACCGGCTCCATG 59.859 52.381 0.00 0.00 0.00 3.66
2607 4265 0.916086 TTATTCCACCGGCTCCATGT 59.084 50.000 0.00 0.00 0.00 3.21
2608 4266 0.180171 TATTCCACCGGCTCCATGTG 59.820 55.000 0.00 0.00 0.00 3.21
2609 4267 1.852157 ATTCCACCGGCTCCATGTGT 61.852 55.000 0.00 0.00 0.00 3.72
2610 4268 1.195442 TTCCACCGGCTCCATGTGTA 61.195 55.000 0.00 0.00 0.00 2.90
2611 4269 0.980754 TCCACCGGCTCCATGTGTAT 60.981 55.000 0.00 0.00 0.00 2.29
2612 4270 0.756294 CCACCGGCTCCATGTGTATA 59.244 55.000 0.00 0.00 0.00 1.47
2613 4271 1.270305 CCACCGGCTCCATGTGTATAG 60.270 57.143 0.00 0.00 0.00 1.31
2614 4272 1.048601 ACCGGCTCCATGTGTATAGG 58.951 55.000 0.00 0.00 0.00 2.57
2615 4273 1.338107 CCGGCTCCATGTGTATAGGA 58.662 55.000 0.00 0.00 0.00 2.94
2616 4274 1.691976 CCGGCTCCATGTGTATAGGAA 59.308 52.381 0.00 0.00 0.00 3.36
2617 4275 2.104111 CCGGCTCCATGTGTATAGGAAA 59.896 50.000 0.00 0.00 0.00 3.13
2618 4276 3.244561 CCGGCTCCATGTGTATAGGAAAT 60.245 47.826 0.00 0.00 0.00 2.17
2619 4277 3.997021 CGGCTCCATGTGTATAGGAAATC 59.003 47.826 0.00 0.00 0.00 2.17
2620 4278 4.503123 CGGCTCCATGTGTATAGGAAATCA 60.503 45.833 0.00 0.00 0.00 2.57
2621 4279 4.999950 GGCTCCATGTGTATAGGAAATCAG 59.000 45.833 0.00 0.00 0.00 2.90
2622 4280 5.455326 GGCTCCATGTGTATAGGAAATCAGT 60.455 44.000 0.00 0.00 0.00 3.41
2623 4281 6.058183 GCTCCATGTGTATAGGAAATCAGTT 58.942 40.000 0.00 0.00 0.00 3.16
2624 4282 6.543831 GCTCCATGTGTATAGGAAATCAGTTT 59.456 38.462 0.00 0.00 0.00 2.66
2625 4283 7.067494 GCTCCATGTGTATAGGAAATCAGTTTT 59.933 37.037 0.00 0.00 0.00 2.43
2626 4284 8.279970 TCCATGTGTATAGGAAATCAGTTTTG 57.720 34.615 0.00 0.00 0.00 2.44
2627 4285 6.974622 CCATGTGTATAGGAAATCAGTTTTGC 59.025 38.462 0.00 0.00 36.00 3.68
2628 4286 7.148018 CCATGTGTATAGGAAATCAGTTTTGCT 60.148 37.037 3.72 3.72 46.41 3.91
2630 4288 8.856153 TGTGTATAGGAAATCAGTTTTGCTAA 57.144 30.769 8.72 0.00 46.97 3.09
2631 4289 9.290988 TGTGTATAGGAAATCAGTTTTGCTAAA 57.709 29.630 8.72 0.00 46.97 1.85
2632 4290 9.774742 GTGTATAGGAAATCAGTTTTGCTAAAG 57.225 33.333 8.72 0.00 46.97 1.85
2633 4291 9.515226 TGTATAGGAAATCAGTTTTGCTAAAGT 57.485 29.630 8.72 0.00 46.97 2.66
2636 4294 9.740710 ATAGGAAATCAGTTTTGCTAAAGTAGT 57.259 29.630 8.72 0.00 46.97 2.73
2638 4296 9.740710 AGGAAATCAGTTTTGCTAAAGTAGTAT 57.259 29.630 0.54 0.00 43.38 2.12
2641 4299 9.626045 AAATCAGTTTTGCTAAAGTAGTATTGC 57.374 29.630 0.54 0.00 0.00 3.56
2642 4300 7.737972 TCAGTTTTGCTAAAGTAGTATTGCA 57.262 32.000 0.54 0.00 0.00 4.08
2643 4301 7.581476 TCAGTTTTGCTAAAGTAGTATTGCAC 58.419 34.615 0.54 0.00 0.00 4.57
2644 4302 7.227711 TCAGTTTTGCTAAAGTAGTATTGCACA 59.772 33.333 0.54 0.00 0.00 4.57
2645 4303 8.023128 CAGTTTTGCTAAAGTAGTATTGCACAT 58.977 33.333 0.54 0.00 0.00 3.21
2646 4304 8.237267 AGTTTTGCTAAAGTAGTATTGCACATC 58.763 33.333 0.00 0.00 0.00 3.06
2647 4305 7.921786 TTTGCTAAAGTAGTATTGCACATCT 57.078 32.000 0.00 0.00 0.00 2.90
2648 4306 9.443323 TTTTGCTAAAGTAGTATTGCACATCTA 57.557 29.630 0.00 0.00 0.00 1.98
2649 4307 9.443323 TTTGCTAAAGTAGTATTGCACATCTAA 57.557 29.630 0.00 0.00 0.00 2.10
2650 4308 9.613428 TTGCTAAAGTAGTATTGCACATCTAAT 57.387 29.630 0.00 0.00 0.00 1.73
2651 4309 9.613428 TGCTAAAGTAGTATTGCACATCTAATT 57.387 29.630 0.00 0.00 0.00 1.40
2660 4318 9.836864 AGTATTGCACATCTAATTTCTATGTCA 57.163 29.630 0.00 0.00 31.60 3.58
2663 4321 9.961265 ATTGCACATCTAATTTCTATGTCATTG 57.039 29.630 0.00 0.00 31.60 2.82
2664 4322 8.735692 TGCACATCTAATTTCTATGTCATTGA 57.264 30.769 0.00 0.00 31.60 2.57
2665 4323 9.346005 TGCACATCTAATTTCTATGTCATTGAT 57.654 29.630 0.00 0.00 31.60 2.57
2666 4324 9.823098 GCACATCTAATTTCTATGTCATTGATC 57.177 33.333 0.00 0.00 31.60 2.92
2674 4332 9.850628 AATTTCTATGTCATTGATCTTGTGTTG 57.149 29.630 0.00 0.00 0.00 3.33
2675 4333 7.984422 TTCTATGTCATTGATCTTGTGTTGT 57.016 32.000 0.00 0.00 0.00 3.32
2676 4334 9.500785 TTTCTATGTCATTGATCTTGTGTTGTA 57.499 29.630 0.00 0.00 0.00 2.41
2677 4335 9.500785 TTCTATGTCATTGATCTTGTGTTGTAA 57.499 29.630 0.00 0.00 0.00 2.41
2678 4336 9.671279 TCTATGTCATTGATCTTGTGTTGTAAT 57.329 29.630 0.00 0.00 0.00 1.89
2681 4339 7.297391 TGTCATTGATCTTGTGTTGTAATTCG 58.703 34.615 0.00 0.00 0.00 3.34
2682 4340 7.041440 TGTCATTGATCTTGTGTTGTAATTCGT 60.041 33.333 0.00 0.00 0.00 3.85
2683 4341 7.269084 GTCATTGATCTTGTGTTGTAATTCGTG 59.731 37.037 0.00 0.00 0.00 4.35
2684 4342 6.612247 TTGATCTTGTGTTGTAATTCGTGT 57.388 33.333 0.00 0.00 0.00 4.49
2685 4343 5.984627 TGATCTTGTGTTGTAATTCGTGTG 58.015 37.500 0.00 0.00 0.00 3.82
2686 4344 5.755861 TGATCTTGTGTTGTAATTCGTGTGA 59.244 36.000 0.00 0.00 0.00 3.58
2687 4345 6.258947 TGATCTTGTGTTGTAATTCGTGTGAA 59.741 34.615 0.00 0.00 38.76 3.18
2688 4346 6.612247 TCTTGTGTTGTAATTCGTGTGAAT 57.388 33.333 0.00 0.00 46.75 2.57
2689 4347 7.716768 TCTTGTGTTGTAATTCGTGTGAATA 57.283 32.000 0.00 0.00 44.02 1.75
2690 4348 8.317891 TCTTGTGTTGTAATTCGTGTGAATAT 57.682 30.769 0.00 0.00 44.02 1.28
2691 4349 8.779303 TCTTGTGTTGTAATTCGTGTGAATATT 58.221 29.630 0.00 0.00 44.02 1.28
2692 4350 9.393249 CTTGTGTTGTAATTCGTGTGAATATTT 57.607 29.630 0.00 0.00 44.02 1.40
2693 4351 9.737427 TTGTGTTGTAATTCGTGTGAATATTTT 57.263 25.926 0.00 0.00 44.02 1.82
2694 4352 9.737427 TGTGTTGTAATTCGTGTGAATATTTTT 57.263 25.926 0.00 0.00 44.02 1.94
2721 4379 9.935241 TTCCTTATATCTCTATGCTTGATTCAC 57.065 33.333 0.00 0.00 0.00 3.18
2722 4380 8.535335 TCCTTATATCTCTATGCTTGATTCACC 58.465 37.037 0.00 0.00 0.00 4.02
2723 4381 7.768120 CCTTATATCTCTATGCTTGATTCACCC 59.232 40.741 0.00 0.00 0.00 4.61
2724 4382 6.692849 ATATCTCTATGCTTGATTCACCCA 57.307 37.500 0.00 0.00 0.00 4.51
2725 4383 4.142609 TCTCTATGCTTGATTCACCCAC 57.857 45.455 0.00 0.00 0.00 4.61
2726 4384 3.776969 TCTCTATGCTTGATTCACCCACT 59.223 43.478 0.00 0.00 0.00 4.00
2727 4385 4.225942 TCTCTATGCTTGATTCACCCACTT 59.774 41.667 0.00 0.00 0.00 3.16
2728 4386 5.425217 TCTCTATGCTTGATTCACCCACTTA 59.575 40.000 0.00 0.00 0.00 2.24
2729 4387 6.061022 TCTATGCTTGATTCACCCACTTAA 57.939 37.500 0.00 0.00 0.00 1.85
2730 4388 6.480763 TCTATGCTTGATTCACCCACTTAAA 58.519 36.000 0.00 0.00 0.00 1.52
2731 4389 7.118723 TCTATGCTTGATTCACCCACTTAAAT 58.881 34.615 0.00 0.00 0.00 1.40
2732 4390 8.271458 TCTATGCTTGATTCACCCACTTAAATA 58.729 33.333 0.00 0.00 0.00 1.40
2733 4391 7.902920 ATGCTTGATTCACCCACTTAAATAT 57.097 32.000 0.00 0.00 0.00 1.28
2734 4392 7.099266 TGCTTGATTCACCCACTTAAATATG 57.901 36.000 0.00 0.00 0.00 1.78
2735 4393 5.979517 GCTTGATTCACCCACTTAAATATGC 59.020 40.000 0.00 0.00 0.00 3.14
2736 4394 6.405731 GCTTGATTCACCCACTTAAATATGCA 60.406 38.462 0.00 0.00 0.00 3.96
2737 4395 7.473735 TTGATTCACCCACTTAAATATGCAA 57.526 32.000 0.00 0.00 0.00 4.08
2738 4396 7.658525 TGATTCACCCACTTAAATATGCAAT 57.341 32.000 0.00 0.00 0.00 3.56
2739 4397 8.759481 TGATTCACCCACTTAAATATGCAATA 57.241 30.769 0.00 0.00 0.00 1.90
2740 4398 9.194972 TGATTCACCCACTTAAATATGCAATAA 57.805 29.630 0.00 0.00 29.06 1.40
2741 4399 9.463443 GATTCACCCACTTAAATATGCAATAAC 57.537 33.333 0.00 0.00 29.06 1.89
2742 4400 8.588290 TTCACCCACTTAAATATGCAATAACT 57.412 30.769 0.00 0.00 29.06 2.24
2743 4401 9.688091 TTCACCCACTTAAATATGCAATAACTA 57.312 29.630 0.00 0.00 29.06 2.24
2744 4402 9.337396 TCACCCACTTAAATATGCAATAACTAG 57.663 33.333 0.00 0.00 29.06 2.57
2745 4403 9.337396 CACCCACTTAAATATGCAATAACTAGA 57.663 33.333 0.00 0.00 29.06 2.43
2746 4404 9.914834 ACCCACTTAAATATGCAATAACTAGAA 57.085 29.630 0.00 0.00 29.06 2.10
2759 4417 9.890629 TGCAATAACTAGAACTCATTTAGATGT 57.109 29.630 0.00 0.00 34.77 3.06
2762 4420 6.893958 AACTAGAACTCATTTAGATGTGCG 57.106 37.500 0.00 0.00 34.77 5.34
2763 4421 4.806247 ACTAGAACTCATTTAGATGTGCGC 59.194 41.667 0.00 0.00 34.77 6.09
2764 4422 3.866651 AGAACTCATTTAGATGTGCGCT 58.133 40.909 9.73 0.00 34.77 5.92
2765 4423 3.620374 AGAACTCATTTAGATGTGCGCTG 59.380 43.478 9.73 0.00 34.77 5.18
2766 4424 2.283298 ACTCATTTAGATGTGCGCTGG 58.717 47.619 9.73 0.00 34.77 4.85
2767 4425 2.093500 ACTCATTTAGATGTGCGCTGGA 60.093 45.455 9.73 0.00 34.77 3.86
2768 4426 2.938451 CTCATTTAGATGTGCGCTGGAA 59.062 45.455 9.73 0.00 34.77 3.53
2769 4427 2.938451 TCATTTAGATGTGCGCTGGAAG 59.062 45.455 9.73 0.00 34.77 3.46
2770 4428 2.760634 TTTAGATGTGCGCTGGAAGA 57.239 45.000 9.73 0.00 34.07 2.87
2771 4429 2.299993 TTAGATGTGCGCTGGAAGAG 57.700 50.000 9.73 0.00 34.07 2.85
2772 4430 1.474330 TAGATGTGCGCTGGAAGAGA 58.526 50.000 9.73 0.00 34.81 3.10
2773 4431 0.175302 AGATGTGCGCTGGAAGAGAG 59.825 55.000 9.73 0.00 34.81 3.20
2774 4432 0.174389 GATGTGCGCTGGAAGAGAGA 59.826 55.000 9.73 0.00 34.81 3.10
2775 4433 0.610174 ATGTGCGCTGGAAGAGAGAA 59.390 50.000 9.73 0.00 34.81 2.87
2776 4434 0.610174 TGTGCGCTGGAAGAGAGAAT 59.390 50.000 9.73 0.00 34.81 2.40
2777 4435 1.005340 GTGCGCTGGAAGAGAGAATG 58.995 55.000 9.73 0.00 34.81 2.67
2778 4436 0.610174 TGCGCTGGAAGAGAGAATGT 59.390 50.000 9.73 0.00 34.81 2.71
2779 4437 1.005340 GCGCTGGAAGAGAGAATGTG 58.995 55.000 0.00 0.00 34.81 3.21
2780 4438 1.005340 CGCTGGAAGAGAGAATGTGC 58.995 55.000 0.00 0.00 34.81 4.57
2781 4439 1.405256 CGCTGGAAGAGAGAATGTGCT 60.405 52.381 0.00 0.00 34.81 4.40
2782 4440 2.008329 GCTGGAAGAGAGAATGTGCTG 58.992 52.381 0.00 0.00 34.07 4.41
2783 4441 2.614987 GCTGGAAGAGAGAATGTGCTGT 60.615 50.000 0.00 0.00 34.07 4.40
2784 4442 3.001414 CTGGAAGAGAGAATGTGCTGTG 58.999 50.000 0.00 0.00 34.07 3.66
2785 4443 2.289882 TGGAAGAGAGAATGTGCTGTGG 60.290 50.000 0.00 0.00 0.00 4.17
2786 4444 1.736681 GAAGAGAGAATGTGCTGTGGC 59.263 52.381 0.00 0.00 39.26 5.01
2797 4455 2.113860 TGCTGTGGCATTCTAGGAAC 57.886 50.000 0.00 0.00 44.28 3.62
2798 4456 1.340017 TGCTGTGGCATTCTAGGAACC 60.340 52.381 0.00 0.00 44.28 3.62
2799 4457 1.340017 GCTGTGGCATTCTAGGAACCA 60.340 52.381 0.00 0.00 38.54 3.67
2800 4458 2.879756 GCTGTGGCATTCTAGGAACCAA 60.880 50.000 0.00 0.00 38.54 3.67
2801 4459 3.624777 CTGTGGCATTCTAGGAACCAAT 58.375 45.455 0.00 0.00 30.82 3.16
2802 4460 3.355378 TGTGGCATTCTAGGAACCAATG 58.645 45.455 0.00 0.00 30.82 2.82
2803 4461 3.245229 TGTGGCATTCTAGGAACCAATGT 60.245 43.478 0.00 0.00 31.29 2.71
2804 4462 3.763897 GTGGCATTCTAGGAACCAATGTT 59.236 43.478 0.00 0.00 37.42 2.71
2805 4463 4.220602 GTGGCATTCTAGGAACCAATGTTT 59.779 41.667 0.00 0.00 33.97 2.83
2806 4464 4.220382 TGGCATTCTAGGAACCAATGTTTG 59.780 41.667 0.00 0.00 33.97 2.93
2807 4465 4.462483 GGCATTCTAGGAACCAATGTTTGA 59.538 41.667 3.79 0.00 33.97 2.69
2808 4466 5.402398 GCATTCTAGGAACCAATGTTTGAC 58.598 41.667 3.79 0.00 33.97 3.18
2809 4467 5.048083 GCATTCTAGGAACCAATGTTTGACA 60.048 40.000 3.79 0.00 33.97 3.58
2810 4468 6.381801 CATTCTAGGAACCAATGTTTGACAC 58.618 40.000 0.00 0.00 33.97 3.67
2811 4469 4.062293 TCTAGGAACCAATGTTTGACACG 58.938 43.478 0.00 0.00 33.97 4.49
2812 4470 2.925724 AGGAACCAATGTTTGACACGA 58.074 42.857 0.00 0.00 33.97 4.35
2813 4471 2.878406 AGGAACCAATGTTTGACACGAG 59.122 45.455 0.00 0.00 33.97 4.18
2814 4472 2.875933 GGAACCAATGTTTGACACGAGA 59.124 45.455 0.00 0.00 33.97 4.04
2815 4473 3.314080 GGAACCAATGTTTGACACGAGAA 59.686 43.478 0.00 0.00 33.97 2.87
2816 4474 4.201970 GGAACCAATGTTTGACACGAGAAA 60.202 41.667 0.00 0.00 33.97 2.52
2817 4475 4.974368 ACCAATGTTTGACACGAGAAAA 57.026 36.364 0.00 0.00 0.00 2.29
2818 4476 5.317733 ACCAATGTTTGACACGAGAAAAA 57.682 34.783 0.00 0.00 0.00 1.94
2819 4477 5.901552 ACCAATGTTTGACACGAGAAAAAT 58.098 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
690 979 7.965107 GTGTTATTTCTTCTGCAGTAAAGATGG 59.035 37.037 16.20 0.00 31.89 3.51
702 991 5.334105 CCACTTGTCGGTGTTATTTCTTCTG 60.334 44.000 0.00 0.00 35.63 3.02
735 1024 6.037726 GGAGTGGTCACGTGTTTTAATTTTT 58.962 36.000 16.51 0.00 36.20 1.94
791 1080 5.172934 GGAAGGTTTTCGTTTTGGACTTTT 58.827 37.500 0.00 0.00 33.98 2.27
820 1109 3.875510 GAGGGCAGGGGCATATGGC 62.876 68.421 20.55 20.55 43.71 4.40
874 1163 2.028125 GAGATTGGACGGCGGATGGA 62.028 60.000 13.24 0.00 0.00 3.41
988 1282 2.430367 GCAGGTGGGAGGTTTCGT 59.570 61.111 0.00 0.00 0.00 3.85
1191 1488 2.757077 CCGGCCTTGAGGAACCTT 59.243 61.111 0.00 0.00 37.39 3.50
1297 1594 0.329596 AACTGGGGCAAGGATGAGAC 59.670 55.000 0.00 0.00 0.00 3.36
1313 1610 6.834451 TCAAGGAATAGAATACCGAGAGAACT 59.166 38.462 0.00 0.00 0.00 3.01
1320 1617 4.219944 CCGGATCAAGGAATAGAATACCGA 59.780 45.833 0.00 0.00 39.11 4.69
1428 1725 8.073768 TGACGAATTTGGACAAGAAAATAACTC 58.926 33.333 0.00 0.00 0.00 3.01
1468 1765 0.392998 GCACATCGATTCCACACCCT 60.393 55.000 0.00 0.00 0.00 4.34
1474 1771 2.787473 AGGAAAGCACATCGATTCCA 57.213 45.000 14.06 0.00 43.03 3.53
1513 1810 2.680339 GACCAGATTAGAACAAGCAGCC 59.320 50.000 0.00 0.00 0.00 4.85
1540 1837 1.435346 AAGACCTGGGTCAAAGGGGG 61.435 60.000 20.16 0.00 46.76 5.40
1550 1847 2.673523 CCAGCTCCAAGACCTGGG 59.326 66.667 0.00 0.00 46.44 4.45
1558 1855 2.282180 GTTTCCGGCCAGCTCCAA 60.282 61.111 2.24 0.00 0.00 3.53
1804 2101 4.548451 TGCAAATTTAATCCATGGTGCA 57.452 36.364 16.02 16.02 38.35 4.57
1818 2115 4.984161 CCTTCGTCTTTTGTGATGCAAATT 59.016 37.500 0.00 0.00 45.38 1.82
1830 2127 5.220605 CGAACAAGAAACTCCTTCGTCTTTT 60.221 40.000 0.00 0.00 39.22 2.27
1853 2150 5.731599 AGACACTAAATCCTACGAGTACG 57.268 43.478 0.00 0.00 45.75 3.67
1854 2151 6.127786 ACCAAGACACTAAATCCTACGAGTAC 60.128 42.308 0.00 0.00 0.00 2.73
1855 2152 5.948162 ACCAAGACACTAAATCCTACGAGTA 59.052 40.000 0.00 0.00 0.00 2.59
1856 2153 4.771054 ACCAAGACACTAAATCCTACGAGT 59.229 41.667 0.00 0.00 0.00 4.18
1857 2154 5.326200 ACCAAGACACTAAATCCTACGAG 57.674 43.478 0.00 0.00 0.00 4.18
1914 2211 6.717997 ACTAATCCGACCACCAAACTAAATTT 59.282 34.615 0.00 0.00 0.00 1.82
1920 2217 3.408634 CAACTAATCCGACCACCAAACT 58.591 45.455 0.00 0.00 0.00 2.66
1921 2218 2.095415 GCAACTAATCCGACCACCAAAC 60.095 50.000 0.00 0.00 0.00 2.93
1922 2219 2.156098 GCAACTAATCCGACCACCAAA 58.844 47.619 0.00 0.00 0.00 3.28
2027 2325 6.721208 AGTTCCTTTCAATTTCTTCAGCCATA 59.279 34.615 0.00 0.00 0.00 2.74
2032 2330 7.710896 AGTTGAGTTCCTTTCAATTTCTTCAG 58.289 34.615 0.00 0.00 36.96 3.02
2067 2365 5.104259 AGGAGGAGCTACAAATTTGGTAG 57.896 43.478 21.74 18.79 40.89 3.18
2074 2372 5.364157 ACGATTAGAAGGAGGAGCTACAAAT 59.636 40.000 0.00 0.00 0.00 2.32
2080 2378 3.224269 GGTACGATTAGAAGGAGGAGCT 58.776 50.000 0.00 0.00 0.00 4.09
2102 2400 6.368791 GGATCCTTCAGGCAAAACAAATAAAC 59.631 38.462 3.84 0.00 34.44 2.01
2103 2401 6.042552 TGGATCCTTCAGGCAAAACAAATAAA 59.957 34.615 14.23 0.00 34.44 1.40
2130 3771 8.084684 CCTATAACGTTTACCTAACCTATCACC 58.915 40.741 5.91 0.00 32.92 4.02
2177 3834 6.088085 CAGCACGACAAGAAATACCAAATTTC 59.912 38.462 0.00 2.90 38.07 2.17
2213 3870 2.185474 AGGGGGATGGATCTTGGTAGAT 59.815 50.000 0.00 0.00 43.85 1.98
2215 3872 2.124560 AGGGGGATGGATCTTGGTAG 57.875 55.000 0.00 0.00 0.00 3.18
2239 3897 0.259647 AATTCCAGCCTGCATAGCCA 59.740 50.000 5.31 0.00 0.00 4.75
2243 3901 5.693961 TCTTCAATAATTCCAGCCTGCATA 58.306 37.500 0.00 0.00 0.00 3.14
2258 3916 5.277601 GCTTAACAGCACGTTCTTCAATA 57.722 39.130 0.00 0.00 46.49 1.90
2281 3939 7.876068 TCCAGTTAAATAGTCAGTTTCGTGATT 59.124 33.333 0.00 0.00 0.00 2.57
2364 4022 6.838090 TGTGGGATGCAAGGATAATAATTTGA 59.162 34.615 0.00 0.00 0.00 2.69
2372 4030 2.026729 TCGTTGTGGGATGCAAGGATAA 60.027 45.455 0.00 0.00 36.31 1.75
2413 4071 5.475909 ACTTCGTTCTACAGATGGTTGTCTA 59.524 40.000 0.00 0.00 32.56 2.59
2414 4072 4.281182 ACTTCGTTCTACAGATGGTTGTCT 59.719 41.667 0.00 0.00 32.56 3.41
2415 4073 4.386049 CACTTCGTTCTACAGATGGTTGTC 59.614 45.833 0.00 0.00 32.56 3.18
2416 4074 4.038763 TCACTTCGTTCTACAGATGGTTGT 59.961 41.667 0.00 0.00 35.09 3.32
2417 4075 4.386049 GTCACTTCGTTCTACAGATGGTTG 59.614 45.833 0.00 0.00 0.00 3.77
2418 4076 4.281182 AGTCACTTCGTTCTACAGATGGTT 59.719 41.667 0.00 0.00 0.00 3.67
2419 4077 3.827302 AGTCACTTCGTTCTACAGATGGT 59.173 43.478 0.00 0.00 0.00 3.55
2420 4078 4.442375 AGTCACTTCGTTCTACAGATGG 57.558 45.455 0.00 0.00 0.00 3.51
2421 4079 6.184580 ACTAGTCACTTCGTTCTACAGATG 57.815 41.667 0.00 0.00 0.00 2.90
2422 4080 5.063691 CGACTAGTCACTTCGTTCTACAGAT 59.936 44.000 22.37 0.00 0.00 2.90
2423 4081 4.388165 CGACTAGTCACTTCGTTCTACAGA 59.612 45.833 22.37 0.00 0.00 3.41
2424 4082 4.639959 CGACTAGTCACTTCGTTCTACAG 58.360 47.826 22.37 0.00 0.00 2.74
2425 4083 3.120408 GCGACTAGTCACTTCGTTCTACA 60.120 47.826 22.37 0.00 35.17 2.74
2426 4084 3.124976 AGCGACTAGTCACTTCGTTCTAC 59.875 47.826 22.37 0.00 35.17 2.59
2427 4085 3.124806 CAGCGACTAGTCACTTCGTTCTA 59.875 47.826 22.37 0.00 35.17 2.10
2428 4086 2.095668 CAGCGACTAGTCACTTCGTTCT 60.096 50.000 22.37 0.16 35.17 3.01
2429 4087 2.243407 CAGCGACTAGTCACTTCGTTC 58.757 52.381 22.37 0.00 35.17 3.95
2430 4088 1.666311 GCAGCGACTAGTCACTTCGTT 60.666 52.381 22.37 4.13 35.17 3.85
2431 4089 0.109689 GCAGCGACTAGTCACTTCGT 60.110 55.000 22.37 0.00 35.17 3.85
2432 4090 1.128724 CGCAGCGACTAGTCACTTCG 61.129 60.000 22.37 19.19 35.82 3.79
2433 4091 0.168348 TCGCAGCGACTAGTCACTTC 59.832 55.000 22.37 11.65 0.00 3.01
2434 4092 0.811915 ATCGCAGCGACTAGTCACTT 59.188 50.000 22.28 0.00 39.18 3.16
2435 4093 0.378962 GATCGCAGCGACTAGTCACT 59.621 55.000 22.28 15.38 39.18 3.41
2436 4094 0.592754 GGATCGCAGCGACTAGTCAC 60.593 60.000 22.28 13.18 39.18 3.67
2437 4095 0.748367 AGGATCGCAGCGACTAGTCA 60.748 55.000 22.28 2.19 39.18 3.41
2438 4096 0.382515 AAGGATCGCAGCGACTAGTC 59.617 55.000 22.28 13.79 39.18 2.59
2439 4097 0.101399 CAAGGATCGCAGCGACTAGT 59.899 55.000 22.28 3.38 39.18 2.57
2440 4098 0.596083 CCAAGGATCGCAGCGACTAG 60.596 60.000 22.28 8.54 39.18 2.57
2441 4099 1.437573 CCAAGGATCGCAGCGACTA 59.562 57.895 22.28 0.00 39.18 2.59
2442 4100 2.185350 CCAAGGATCGCAGCGACT 59.815 61.111 22.28 11.25 39.18 4.18
2443 4101 3.567797 GCCAAGGATCGCAGCGAC 61.568 66.667 22.28 13.92 39.18 5.19
2444 4102 4.081185 TGCCAAGGATCGCAGCGA 62.081 61.111 22.06 22.06 41.13 4.93
2445 4103 3.570638 CTGCCAAGGATCGCAGCG 61.571 66.667 9.06 9.06 45.39 5.18
2448 4106 2.046023 CCACTGCCAAGGATCGCA 60.046 61.111 0.00 0.00 0.00 5.10
2449 4107 1.817099 CTCCACTGCCAAGGATCGC 60.817 63.158 0.00 0.00 32.53 4.58
2450 4108 1.153289 CCTCCACTGCCAAGGATCG 60.153 63.158 0.00 0.00 32.53 3.69
2451 4109 1.139853 CTACCTCCACTGCCAAGGATC 59.860 57.143 0.00 0.00 34.16 3.36
2452 4110 1.207791 CTACCTCCACTGCCAAGGAT 58.792 55.000 0.00 0.00 34.16 3.24
2453 4111 0.116342 TCTACCTCCACTGCCAAGGA 59.884 55.000 0.00 0.00 34.16 3.36
2454 4112 1.134280 CATCTACCTCCACTGCCAAGG 60.134 57.143 0.00 0.00 36.21 3.61
2455 4113 1.745141 GCATCTACCTCCACTGCCAAG 60.745 57.143 0.00 0.00 0.00 3.61
2456 4114 0.253044 GCATCTACCTCCACTGCCAA 59.747 55.000 0.00 0.00 0.00 4.52
2457 4115 0.909133 TGCATCTACCTCCACTGCCA 60.909 55.000 0.00 0.00 31.89 4.92
2458 4116 0.471617 ATGCATCTACCTCCACTGCC 59.528 55.000 0.00 0.00 31.89 4.85
2459 4117 1.139654 TCATGCATCTACCTCCACTGC 59.860 52.381 0.00 0.00 0.00 4.40
2460 4118 2.800985 CGTCATGCATCTACCTCCACTG 60.801 54.545 0.00 0.00 0.00 3.66
2461 4119 1.410517 CGTCATGCATCTACCTCCACT 59.589 52.381 0.00 0.00 0.00 4.00
2462 4120 1.539065 CCGTCATGCATCTACCTCCAC 60.539 57.143 0.00 0.00 0.00 4.02
2463 4121 0.752658 CCGTCATGCATCTACCTCCA 59.247 55.000 0.00 0.00 0.00 3.86
2464 4122 1.040646 TCCGTCATGCATCTACCTCC 58.959 55.000 0.00 0.00 0.00 4.30
2465 4123 1.600663 CGTCCGTCATGCATCTACCTC 60.601 57.143 0.00 0.00 0.00 3.85
2466 4124 0.385751 CGTCCGTCATGCATCTACCT 59.614 55.000 0.00 0.00 0.00 3.08
2467 4125 0.384309 TCGTCCGTCATGCATCTACC 59.616 55.000 0.00 0.00 0.00 3.18
2468 4126 2.120232 CTTCGTCCGTCATGCATCTAC 58.880 52.381 0.00 0.00 0.00 2.59
2469 4127 1.749063 ACTTCGTCCGTCATGCATCTA 59.251 47.619 0.00 0.00 0.00 1.98
2470 4128 0.532573 ACTTCGTCCGTCATGCATCT 59.467 50.000 0.00 0.00 0.00 2.90
2471 4129 0.647410 CACTTCGTCCGTCATGCATC 59.353 55.000 0.00 0.00 0.00 3.91
2472 4130 1.361668 GCACTTCGTCCGTCATGCAT 61.362 55.000 0.00 0.00 33.27 3.96
2473 4131 2.027073 GCACTTCGTCCGTCATGCA 61.027 57.895 0.00 0.00 33.27 3.96
2474 4132 2.778679 GCACTTCGTCCGTCATGC 59.221 61.111 0.00 0.00 0.00 4.06
2475 4133 1.406219 CTCGCACTTCGTCCGTCATG 61.406 60.000 0.00 0.00 39.67 3.07
2476 4134 1.154016 CTCGCACTTCGTCCGTCAT 60.154 57.895 0.00 0.00 39.67 3.06
2477 4135 2.254350 CTCGCACTTCGTCCGTCA 59.746 61.111 0.00 0.00 39.67 4.35
2478 4136 3.173240 GCTCGCACTTCGTCCGTC 61.173 66.667 0.00 0.00 39.67 4.79
2490 4148 2.969238 AGTATGCCATGCGCTCGC 60.969 61.111 9.73 7.38 38.78 5.03
2491 4149 2.933666 CAGTATGCCATGCGCTCG 59.066 61.111 9.73 0.00 38.78 5.03
2502 4160 1.704010 CGCAGACACACGCAGTATG 59.296 57.895 0.00 0.00 42.87 2.39
2503 4161 4.169102 CGCAGACACACGCAGTAT 57.831 55.556 0.00 0.00 41.61 2.12
2514 4172 0.517316 ACTCGATTTTTGGCGCAGAC 59.483 50.000 10.83 0.00 0.00 3.51
2515 4173 2.087501 TACTCGATTTTTGGCGCAGA 57.912 45.000 10.83 0.00 0.00 4.26
2516 4174 2.892373 TTACTCGATTTTTGGCGCAG 57.108 45.000 10.83 0.00 0.00 5.18
2517 4175 3.398954 GATTACTCGATTTTTGGCGCA 57.601 42.857 10.83 0.00 0.00 6.09
2529 4187 0.317103 CCTGAGCCGTCGATTACTCG 60.317 60.000 0.00 0.00 46.41 4.18
2530 4188 0.739561 ACCTGAGCCGTCGATTACTC 59.260 55.000 0.00 0.00 0.00 2.59
2531 4189 0.456221 CACCTGAGCCGTCGATTACT 59.544 55.000 0.00 0.00 0.00 2.24
2532 4190 0.172803 ACACCTGAGCCGTCGATTAC 59.827 55.000 0.00 0.00 0.00 1.89
2533 4191 0.172578 CACACCTGAGCCGTCGATTA 59.827 55.000 0.00 0.00 0.00 1.75
2534 4192 1.079819 CACACCTGAGCCGTCGATT 60.080 57.895 0.00 0.00 0.00 3.34
2535 4193 2.573869 CACACCTGAGCCGTCGAT 59.426 61.111 0.00 0.00 0.00 3.59
2536 4194 3.680786 CCACACCTGAGCCGTCGA 61.681 66.667 0.00 0.00 0.00 4.20
2542 4200 4.357947 TCGACGCCACACCTGAGC 62.358 66.667 0.00 0.00 0.00 4.26
2543 4201 2.430921 GTCGACGCCACACCTGAG 60.431 66.667 0.00 0.00 0.00 3.35
2544 4202 4.337060 CGTCGACGCCACACCTGA 62.337 66.667 26.59 0.00 0.00 3.86
2561 4219 4.856607 CGAGGGAAGAGCGGTCGC 62.857 72.222 9.28 7.32 42.33 5.19
2562 4220 3.132139 TCGAGGGAAGAGCGGTCG 61.132 66.667 9.28 0.00 0.00 4.79
2563 4221 2.490685 GTCGAGGGAAGAGCGGTC 59.509 66.667 6.48 6.48 0.00 4.79
2564 4222 3.441290 CGTCGAGGGAAGAGCGGT 61.441 66.667 0.00 0.00 0.00 5.68
2565 4223 3.441290 ACGTCGAGGGAAGAGCGG 61.441 66.667 10.27 0.00 0.00 5.52
2566 4224 1.642037 TACACGTCGAGGGAAGAGCG 61.642 60.000 10.27 0.00 0.00 5.03
2567 4225 0.739561 ATACACGTCGAGGGAAGAGC 59.260 55.000 10.27 0.00 0.00 4.09
2568 4226 2.290464 AGATACACGTCGAGGGAAGAG 58.710 52.381 10.27 0.00 0.00 2.85
2569 4227 2.414994 AGATACACGTCGAGGGAAGA 57.585 50.000 10.27 0.00 0.00 2.87
2570 4228 4.832590 ATAAGATACACGTCGAGGGAAG 57.167 45.455 10.27 1.75 0.00 3.46
2571 4229 4.037208 GGAATAAGATACACGTCGAGGGAA 59.963 45.833 10.27 0.00 0.00 3.97
2572 4230 3.567164 GGAATAAGATACACGTCGAGGGA 59.433 47.826 10.27 0.00 0.00 4.20
2573 4231 3.317149 TGGAATAAGATACACGTCGAGGG 59.683 47.826 10.27 1.27 0.00 4.30
2574 4232 4.288531 GTGGAATAAGATACACGTCGAGG 58.711 47.826 3.03 3.03 0.00 4.63
2575 4233 4.288531 GGTGGAATAAGATACACGTCGAG 58.711 47.826 0.00 0.00 34.78 4.04
2576 4234 3.242837 CGGTGGAATAAGATACACGTCGA 60.243 47.826 0.00 0.00 34.78 4.20
2577 4235 3.040795 CGGTGGAATAAGATACACGTCG 58.959 50.000 0.00 0.00 34.78 5.12
2578 4236 3.378339 CCGGTGGAATAAGATACACGTC 58.622 50.000 0.00 0.00 34.78 4.34
2579 4237 2.482490 GCCGGTGGAATAAGATACACGT 60.482 50.000 1.90 0.00 34.78 4.49
2580 4238 2.132762 GCCGGTGGAATAAGATACACG 58.867 52.381 1.90 0.00 34.78 4.49
2581 4239 3.391049 GAGCCGGTGGAATAAGATACAC 58.609 50.000 1.90 0.00 0.00 2.90
2582 4240 2.367567 GGAGCCGGTGGAATAAGATACA 59.632 50.000 1.90 0.00 0.00 2.29
2583 4241 2.367567 TGGAGCCGGTGGAATAAGATAC 59.632 50.000 1.90 0.00 0.00 2.24
2584 4242 2.684943 TGGAGCCGGTGGAATAAGATA 58.315 47.619 1.90 0.00 0.00 1.98
2585 4243 1.507140 TGGAGCCGGTGGAATAAGAT 58.493 50.000 1.90 0.00 0.00 2.40
2586 4244 1.140852 CATGGAGCCGGTGGAATAAGA 59.859 52.381 1.90 0.00 0.00 2.10
2587 4245 1.134098 ACATGGAGCCGGTGGAATAAG 60.134 52.381 1.90 0.00 0.00 1.73
2588 4246 0.916086 ACATGGAGCCGGTGGAATAA 59.084 50.000 1.90 0.00 0.00 1.40
2589 4247 0.180171 CACATGGAGCCGGTGGAATA 59.820 55.000 1.90 0.00 0.00 1.75
2590 4248 1.077501 CACATGGAGCCGGTGGAAT 60.078 57.895 1.90 0.00 0.00 3.01
2591 4249 1.195442 TACACATGGAGCCGGTGGAA 61.195 55.000 1.90 0.00 36.87 3.53
2592 4250 0.980754 ATACACATGGAGCCGGTGGA 60.981 55.000 1.90 7.16 36.87 4.02
2593 4251 0.756294 TATACACATGGAGCCGGTGG 59.244 55.000 1.90 0.00 36.87 4.61
2594 4252 1.270305 CCTATACACATGGAGCCGGTG 60.270 57.143 1.90 8.91 38.47 4.94
2595 4253 1.048601 CCTATACACATGGAGCCGGT 58.951 55.000 1.90 0.00 0.00 5.28
2596 4254 1.338107 TCCTATACACATGGAGCCGG 58.662 55.000 0.00 0.00 0.00 6.13
2597 4255 3.469008 TTTCCTATACACATGGAGCCG 57.531 47.619 0.00 0.00 0.00 5.52
2598 4256 4.973168 TGATTTCCTATACACATGGAGCC 58.027 43.478 0.00 0.00 0.00 4.70
2599 4257 5.615289 ACTGATTTCCTATACACATGGAGC 58.385 41.667 0.00 0.00 0.00 4.70
2600 4258 8.400947 CAAAACTGATTTCCTATACACATGGAG 58.599 37.037 0.00 0.00 0.00 3.86
2601 4259 7.148086 GCAAAACTGATTTCCTATACACATGGA 60.148 37.037 0.00 0.00 0.00 3.41
2602 4260 6.974622 GCAAAACTGATTTCCTATACACATGG 59.025 38.462 0.00 0.00 0.00 3.66
2603 4261 7.765307 AGCAAAACTGATTTCCTATACACATG 58.235 34.615 0.00 0.00 0.00 3.21
2604 4262 7.944729 AGCAAAACTGATTTCCTATACACAT 57.055 32.000 0.00 0.00 0.00 3.21
2605 4263 8.856153 TTAGCAAAACTGATTTCCTATACACA 57.144 30.769 0.00 0.00 0.00 3.72
2606 4264 9.774742 CTTTAGCAAAACTGATTTCCTATACAC 57.225 33.333 0.00 0.00 0.00 2.90
2607 4265 9.515226 ACTTTAGCAAAACTGATTTCCTATACA 57.485 29.630 0.00 0.00 0.00 2.29
2610 4268 9.740710 ACTACTTTAGCAAAACTGATTTCCTAT 57.259 29.630 0.00 0.00 0.00 2.57
2612 4270 9.740710 ATACTACTTTAGCAAAACTGATTTCCT 57.259 29.630 0.00 0.00 0.00 3.36
2615 4273 9.626045 GCAATACTACTTTAGCAAAACTGATTT 57.374 29.630 0.00 0.00 0.00 2.17
2616 4274 8.792633 TGCAATACTACTTTAGCAAAACTGATT 58.207 29.630 0.00 0.00 0.00 2.57
2617 4275 8.237267 GTGCAATACTACTTTAGCAAAACTGAT 58.763 33.333 0.00 0.00 33.37 2.90
2618 4276 7.227711 TGTGCAATACTACTTTAGCAAAACTGA 59.772 33.333 0.00 0.00 33.37 3.41
2619 4277 7.359595 TGTGCAATACTACTTTAGCAAAACTG 58.640 34.615 0.00 0.00 33.37 3.16
2620 4278 7.504924 TGTGCAATACTACTTTAGCAAAACT 57.495 32.000 0.00 0.00 33.37 2.66
2621 4279 8.237267 AGATGTGCAATACTACTTTAGCAAAAC 58.763 33.333 0.00 0.00 33.37 2.43
2622 4280 8.335532 AGATGTGCAATACTACTTTAGCAAAA 57.664 30.769 0.00 0.00 33.37 2.44
2623 4281 7.921786 AGATGTGCAATACTACTTTAGCAAA 57.078 32.000 0.00 0.00 33.37 3.68
2624 4282 9.613428 ATTAGATGTGCAATACTACTTTAGCAA 57.387 29.630 0.00 0.00 33.37 3.91
2625 4283 9.613428 AATTAGATGTGCAATACTACTTTAGCA 57.387 29.630 0.00 0.00 0.00 3.49
2634 4292 9.836864 TGACATAGAAATTAGATGTGCAATACT 57.163 29.630 4.91 0.00 33.99 2.12
2637 4295 9.961265 CAATGACATAGAAATTAGATGTGCAAT 57.039 29.630 4.91 0.00 33.99 3.56
2638 4296 9.176460 TCAATGACATAGAAATTAGATGTGCAA 57.824 29.630 4.91 0.00 33.99 4.08
2639 4297 8.735692 TCAATGACATAGAAATTAGATGTGCA 57.264 30.769 4.91 0.00 33.99 4.57
2640 4298 9.823098 GATCAATGACATAGAAATTAGATGTGC 57.177 33.333 4.91 0.00 33.99 4.57
2648 4306 9.850628 CAACACAAGATCAATGACATAGAAATT 57.149 29.630 5.62 0.00 0.00 1.82
2649 4307 9.017509 ACAACACAAGATCAATGACATAGAAAT 57.982 29.630 5.62 0.00 0.00 2.17
2650 4308 8.394971 ACAACACAAGATCAATGACATAGAAA 57.605 30.769 5.62 0.00 0.00 2.52
2651 4309 7.984422 ACAACACAAGATCAATGACATAGAA 57.016 32.000 5.62 0.00 0.00 2.10
2652 4310 9.671279 ATTACAACACAAGATCAATGACATAGA 57.329 29.630 5.62 0.00 0.00 1.98
2655 4313 7.964559 CGAATTACAACACAAGATCAATGACAT 59.035 33.333 5.62 0.00 0.00 3.06
2656 4314 7.041440 ACGAATTACAACACAAGATCAATGACA 60.041 33.333 5.62 0.00 0.00 3.58
2657 4315 7.269084 CACGAATTACAACACAAGATCAATGAC 59.731 37.037 5.62 0.00 0.00 3.06
2658 4316 7.041440 ACACGAATTACAACACAAGATCAATGA 60.041 33.333 5.62 0.00 0.00 2.57
2659 4317 7.059831 CACACGAATTACAACACAAGATCAATG 59.940 37.037 0.00 0.00 0.00 2.82
2660 4318 7.041440 TCACACGAATTACAACACAAGATCAAT 60.041 33.333 0.00 0.00 0.00 2.57
2661 4319 6.258947 TCACACGAATTACAACACAAGATCAA 59.741 34.615 0.00 0.00 0.00 2.57
2662 4320 5.755861 TCACACGAATTACAACACAAGATCA 59.244 36.000 0.00 0.00 0.00 2.92
2663 4321 6.223138 TCACACGAATTACAACACAAGATC 57.777 37.500 0.00 0.00 0.00 2.75
2664 4322 6.612247 TTCACACGAATTACAACACAAGAT 57.388 33.333 0.00 0.00 0.00 2.40
2665 4323 6.612247 ATTCACACGAATTACAACACAAGA 57.388 33.333 0.00 0.00 38.80 3.02
2666 4324 8.948853 AATATTCACACGAATTACAACACAAG 57.051 30.769 0.00 0.00 42.06 3.16
2667 4325 9.737427 AAAATATTCACACGAATTACAACACAA 57.263 25.926 0.00 0.00 42.06 3.33
2668 4326 9.737427 AAAAATATTCACACGAATTACAACACA 57.263 25.926 0.00 0.00 42.06 3.72
2695 4353 9.935241 GTGAATCAAGCATAGAGATATAAGGAA 57.065 33.333 0.00 0.00 0.00 3.36
2696 4354 8.535335 GGTGAATCAAGCATAGAGATATAAGGA 58.465 37.037 0.00 0.00 0.00 3.36
2697 4355 7.768120 GGGTGAATCAAGCATAGAGATATAAGG 59.232 40.741 0.00 0.00 0.00 2.69
2698 4356 8.316946 TGGGTGAATCAAGCATAGAGATATAAG 58.683 37.037 0.00 0.00 0.00 1.73
2699 4357 8.097038 GTGGGTGAATCAAGCATAGAGATATAA 58.903 37.037 0.00 0.00 0.00 0.98
2700 4358 7.455953 AGTGGGTGAATCAAGCATAGAGATATA 59.544 37.037 0.00 0.00 0.00 0.86
2701 4359 6.271857 AGTGGGTGAATCAAGCATAGAGATAT 59.728 38.462 0.00 0.00 0.00 1.63
2702 4360 5.604231 AGTGGGTGAATCAAGCATAGAGATA 59.396 40.000 0.00 0.00 0.00 1.98
2703 4361 4.411540 AGTGGGTGAATCAAGCATAGAGAT 59.588 41.667 0.00 0.00 0.00 2.75
2704 4362 3.776969 AGTGGGTGAATCAAGCATAGAGA 59.223 43.478 0.00 0.00 0.00 3.10
2705 4363 4.148128 AGTGGGTGAATCAAGCATAGAG 57.852 45.455 0.00 0.00 0.00 2.43
2706 4364 4.574674 AAGTGGGTGAATCAAGCATAGA 57.425 40.909 0.00 0.00 0.00 1.98
2707 4365 6.757897 TTTAAGTGGGTGAATCAAGCATAG 57.242 37.500 0.00 0.00 0.00 2.23
2708 4366 8.849168 CATATTTAAGTGGGTGAATCAAGCATA 58.151 33.333 0.00 0.00 0.00 3.14
2709 4367 7.685155 GCATATTTAAGTGGGTGAATCAAGCAT 60.685 37.037 0.00 0.00 0.00 3.79
2710 4368 6.405731 GCATATTTAAGTGGGTGAATCAAGCA 60.406 38.462 0.00 0.00 0.00 3.91
2711 4369 5.979517 GCATATTTAAGTGGGTGAATCAAGC 59.020 40.000 0.00 0.00 0.00 4.01
2712 4370 7.099266 TGCATATTTAAGTGGGTGAATCAAG 57.901 36.000 0.00 0.00 0.00 3.02
2713 4371 7.473735 TTGCATATTTAAGTGGGTGAATCAA 57.526 32.000 0.00 0.00 0.00 2.57
2714 4372 7.658525 ATTGCATATTTAAGTGGGTGAATCA 57.341 32.000 0.00 0.00 0.00 2.57
2715 4373 9.463443 GTTATTGCATATTTAAGTGGGTGAATC 57.537 33.333 0.00 0.00 0.00 2.52
2716 4374 9.200817 AGTTATTGCATATTTAAGTGGGTGAAT 57.799 29.630 0.00 0.00 0.00 2.57
2717 4375 8.588290 AGTTATTGCATATTTAAGTGGGTGAA 57.412 30.769 0.00 0.00 0.00 3.18
2718 4376 9.337396 CTAGTTATTGCATATTTAAGTGGGTGA 57.663 33.333 0.00 0.00 0.00 4.02
2719 4377 9.337396 TCTAGTTATTGCATATTTAAGTGGGTG 57.663 33.333 0.00 0.00 0.00 4.61
2720 4378 9.914834 TTCTAGTTATTGCATATTTAAGTGGGT 57.085 29.630 0.00 0.00 0.00 4.51
2733 4391 9.890629 ACATCTAAATGAGTTCTAGTTATTGCA 57.109 29.630 0.00 0.00 36.67 4.08
2736 4394 9.035607 CGCACATCTAAATGAGTTCTAGTTATT 57.964 33.333 0.00 0.00 36.67 1.40
2737 4395 7.169982 GCGCACATCTAAATGAGTTCTAGTTAT 59.830 37.037 0.30 0.00 36.67 1.89
2738 4396 6.475727 GCGCACATCTAAATGAGTTCTAGTTA 59.524 38.462 0.30 0.00 36.67 2.24
2739 4397 5.292101 GCGCACATCTAAATGAGTTCTAGTT 59.708 40.000 0.30 0.00 36.67 2.24
2740 4398 4.806247 GCGCACATCTAAATGAGTTCTAGT 59.194 41.667 0.30 0.00 36.67 2.57
2741 4399 5.046529 AGCGCACATCTAAATGAGTTCTAG 58.953 41.667 11.47 0.00 36.67 2.43
2742 4400 4.805719 CAGCGCACATCTAAATGAGTTCTA 59.194 41.667 11.47 0.00 36.67 2.10
2743 4401 3.620374 CAGCGCACATCTAAATGAGTTCT 59.380 43.478 11.47 0.00 36.67 3.01
2744 4402 3.242543 CCAGCGCACATCTAAATGAGTTC 60.243 47.826 11.47 0.00 36.67 3.01
2745 4403 2.679837 CCAGCGCACATCTAAATGAGTT 59.320 45.455 11.47 0.00 36.67 3.01
2746 4404 2.093500 TCCAGCGCACATCTAAATGAGT 60.093 45.455 11.47 0.00 36.67 3.41
2747 4405 2.554142 TCCAGCGCACATCTAAATGAG 58.446 47.619 11.47 0.00 36.67 2.90
2748 4406 2.689553 TCCAGCGCACATCTAAATGA 57.310 45.000 11.47 0.00 36.67 2.57
2749 4407 2.938451 TCTTCCAGCGCACATCTAAATG 59.062 45.455 11.47 0.00 38.93 2.32
2750 4408 3.118629 TCTCTTCCAGCGCACATCTAAAT 60.119 43.478 11.47 0.00 0.00 1.40
2751 4409 2.233676 TCTCTTCCAGCGCACATCTAAA 59.766 45.455 11.47 0.00 0.00 1.85
2752 4410 1.824852 TCTCTTCCAGCGCACATCTAA 59.175 47.619 11.47 0.00 0.00 2.10
2753 4411 1.406898 CTCTCTTCCAGCGCACATCTA 59.593 52.381 11.47 0.00 0.00 1.98
2754 4412 0.175302 CTCTCTTCCAGCGCACATCT 59.825 55.000 11.47 0.00 0.00 2.90
2755 4413 0.174389 TCTCTCTTCCAGCGCACATC 59.826 55.000 11.47 0.00 0.00 3.06
2756 4414 0.610174 TTCTCTCTTCCAGCGCACAT 59.390 50.000 11.47 0.00 0.00 3.21
2757 4415 0.610174 ATTCTCTCTTCCAGCGCACA 59.390 50.000 11.47 0.00 0.00 4.57
2758 4416 1.005340 CATTCTCTCTTCCAGCGCAC 58.995 55.000 11.47 0.00 0.00 5.34
2759 4417 0.610174 ACATTCTCTCTTCCAGCGCA 59.390 50.000 11.47 0.00 0.00 6.09
2760 4418 1.005340 CACATTCTCTCTTCCAGCGC 58.995 55.000 0.00 0.00 0.00 5.92
2761 4419 1.005340 GCACATTCTCTCTTCCAGCG 58.995 55.000 0.00 0.00 0.00 5.18
2762 4420 2.008329 CAGCACATTCTCTCTTCCAGC 58.992 52.381 0.00 0.00 0.00 4.85
2763 4421 3.001414 CACAGCACATTCTCTCTTCCAG 58.999 50.000 0.00 0.00 0.00 3.86
2764 4422 2.289882 CCACAGCACATTCTCTCTTCCA 60.290 50.000 0.00 0.00 0.00 3.53
2765 4423 2.354259 CCACAGCACATTCTCTCTTCC 58.646 52.381 0.00 0.00 0.00 3.46
2766 4424 1.736681 GCCACAGCACATTCTCTCTTC 59.263 52.381 0.00 0.00 39.53 2.87
2767 4425 1.072806 TGCCACAGCACATTCTCTCTT 59.927 47.619 0.00 0.00 46.52 2.85
2768 4426 0.689055 TGCCACAGCACATTCTCTCT 59.311 50.000 0.00 0.00 46.52 3.10
2769 4427 3.238232 TGCCACAGCACATTCTCTC 57.762 52.632 0.00 0.00 46.52 3.20
2779 4437 1.340017 TGGTTCCTAGAATGCCACAGC 60.340 52.381 0.00 0.00 40.48 4.40
2780 4438 2.787473 TGGTTCCTAGAATGCCACAG 57.213 50.000 0.00 0.00 0.00 3.66
2781 4439 3.245229 ACATTGGTTCCTAGAATGCCACA 60.245 43.478 0.00 0.00 31.45 4.17
2782 4440 3.356290 ACATTGGTTCCTAGAATGCCAC 58.644 45.455 0.00 0.00 31.45 5.01
2783 4441 3.737559 ACATTGGTTCCTAGAATGCCA 57.262 42.857 0.00 0.00 31.45 4.92
2784 4442 4.462483 TCAAACATTGGTTCCTAGAATGCC 59.538 41.667 0.00 0.00 35.82 4.40
2785 4443 5.048083 TGTCAAACATTGGTTCCTAGAATGC 60.048 40.000 0.00 0.00 35.82 3.56
2786 4444 6.381801 GTGTCAAACATTGGTTCCTAGAATG 58.618 40.000 0.00 0.00 35.82 2.67
2787 4445 5.181245 CGTGTCAAACATTGGTTCCTAGAAT 59.819 40.000 0.00 0.00 35.82 2.40
2788 4446 4.513692 CGTGTCAAACATTGGTTCCTAGAA 59.486 41.667 0.00 0.00 35.82 2.10
2789 4447 4.062293 CGTGTCAAACATTGGTTCCTAGA 58.938 43.478 0.00 0.00 35.82 2.43
2790 4448 4.062293 TCGTGTCAAACATTGGTTCCTAG 58.938 43.478 0.00 0.00 35.82 3.02
2791 4449 4.062293 CTCGTGTCAAACATTGGTTCCTA 58.938 43.478 0.00 0.00 35.82 2.94
2792 4450 2.878406 CTCGTGTCAAACATTGGTTCCT 59.122 45.455 0.00 0.00 35.82 3.36
2793 4451 2.875933 TCTCGTGTCAAACATTGGTTCC 59.124 45.455 0.00 0.00 35.82 3.62
2794 4452 4.545823 TTCTCGTGTCAAACATTGGTTC 57.454 40.909 0.00 0.00 35.82 3.62
2795 4453 4.974368 TTTCTCGTGTCAAACATTGGTT 57.026 36.364 0.00 0.00 39.43 3.67
2796 4454 4.974368 TTTTCTCGTGTCAAACATTGGT 57.026 36.364 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.