Multiple sequence alignment - TraesCS2B01G236100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G236100 chr2B 100.000 4466 0 0 1 4466 236455427 236459892 0.000000e+00 8248.0
1 TraesCS2B01G236100 chr2B 83.962 212 28 6 501 709 575902080 575902288 9.800000e-47 198.0
2 TraesCS2B01G236100 chr2B 91.538 130 7 3 594 721 92488806 92488933 4.590000e-40 176.0
3 TraesCS2B01G236100 chr2B 86.792 53 7 0 3713 3765 703704110 703704162 4.820000e-05 60.2
4 TraesCS2B01G236100 chr2B 97.143 35 0 1 3681 3715 28583085 28583118 1.740000e-04 58.4
5 TraesCS2B01G236100 chr2D 97.083 2880 72 5 811 3685 179661146 179664018 0.000000e+00 4843.0
6 TraesCS2B01G236100 chr2D 91.796 707 28 6 3767 4466 179664017 179664700 0.000000e+00 957.0
7 TraesCS2B01G236100 chr2D 91.989 362 17 7 1 357 179660702 179661056 8.630000e-137 497.0
8 TraesCS2B01G236100 chr2D 94.118 51 3 0 736 786 179661054 179661104 1.330000e-10 78.7
9 TraesCS2B01G236100 chr2A 96.645 1729 53 3 1961 3685 194122871 194124598 0.000000e+00 2867.0
10 TraesCS2B01G236100 chr2A 93.627 1020 52 5 779 1789 194121846 194122861 0.000000e+00 1511.0
11 TraesCS2B01G236100 chr2A 93.777 707 32 4 3767 4466 194124597 194125298 0.000000e+00 1051.0
12 TraesCS2B01G236100 chr2A 93.370 362 19 3 1 357 194121422 194121783 8.510000e-147 531.0
13 TraesCS2B01G236100 chr2A 96.032 252 10 0 351 602 61973145 61972894 1.160000e-110 411.0
14 TraesCS2B01G236100 chr1B 83.312 1564 223 20 881 2426 123968038 123966495 0.000000e+00 1408.0
15 TraesCS2B01G236100 chr1B 97.119 243 7 0 360 602 660398840 660398598 1.160000e-110 411.0
16 TraesCS2B01G236100 chr1B 84.375 192 22 7 540 726 340427109 340427297 9.870000e-42 182.0
17 TraesCS2B01G236100 chr1A 82.174 1509 233 22 968 2464 96462641 96464125 0.000000e+00 1264.0
18 TraesCS2B01G236100 chr1A 79.117 1609 251 43 883 2465 96470365 96471914 0.000000e+00 1031.0
19 TraesCS2B01G236100 chr1A 94.118 51 3 0 4304 4354 548453472 548453422 1.330000e-10 78.7
20 TraesCS2B01G236100 chr1A 100.000 31 0 0 3680 3710 531984749 531984779 1.740000e-04 58.4
21 TraesCS2B01G236100 chr6A 81.438 1363 212 19 968 2303 574713 573365 0.000000e+00 1077.0
22 TraesCS2B01G236100 chr6A 100.000 34 0 0 3737 3770 307208821 307208788 3.730000e-06 63.9
23 TraesCS2B01G236100 chr6A 79.545 88 14 4 3682 3768 29293112 29293196 4.820000e-05 60.2
24 TraesCS2B01G236100 chr6A 100.000 32 0 0 3738 3769 608711794 608711825 4.820000e-05 60.2
25 TraesCS2B01G236100 chr6A 100.000 32 0 0 3679 3710 613608712 613608743 4.820000e-05 60.2
26 TraesCS2B01G236100 chr6A 94.286 35 1 1 3681 3715 480694016 480693983 8.000000e-03 52.8
27 TraesCS2B01G236100 chr5B 79.158 1497 263 24 997 2461 610664610 610663131 0.000000e+00 990.0
28 TraesCS2B01G236100 chr5B 97.581 248 6 0 355 602 280458361 280458608 4.130000e-115 425.0
29 TraesCS2B01G236100 chr5B 96.414 251 9 0 352 602 476018213 476018463 8.940000e-112 414.0
30 TraesCS2B01G236100 chr5B 96.386 249 9 0 354 602 66293133 66293381 1.160000e-110 411.0
31 TraesCS2B01G236100 chr5B 93.388 121 6 2 599 718 9643309 9643428 1.280000e-40 178.0
32 TraesCS2B01G236100 chrUn 80.108 1106 190 16 1209 2303 217766781 217765695 0.000000e+00 797.0
33 TraesCS2B01G236100 chrUn 80.108 1106 190 16 1209 2303 246307959 246306873 0.000000e+00 797.0
34 TraesCS2B01G236100 chrUn 96.970 33 0 1 3683 3715 109117203 109117234 2.000000e-03 54.7
35 TraesCS2B01G236100 chrUn 100.000 29 0 0 3744 3772 269590382 269590354 2.000000e-03 54.7
36 TraesCS2B01G236100 chrUn 100.000 28 0 0 3681 3708 99858030 99858003 8.000000e-03 52.8
37 TraesCS2B01G236100 chr6B 80.249 1043 146 33 892 1904 3825683 3824671 0.000000e+00 730.0
38 TraesCS2B01G236100 chr6B 96.748 246 8 0 357 602 29525563 29525808 1.160000e-110 411.0
39 TraesCS2B01G236100 chr6B 95.312 256 11 1 347 602 184891584 184891838 5.380000e-109 405.0
40 TraesCS2B01G236100 chr6B 92.683 123 8 1 599 720 129854397 129854519 4.590000e-40 176.0
41 TraesCS2B01G236100 chr6B 91.935 124 10 0 592 715 299051564 299051441 1.650000e-39 174.0
42 TraesCS2B01G236100 chr7B 96.787 249 8 0 354 602 629873222 629872974 2.490000e-112 416.0
43 TraesCS2B01G236100 chr7B 97.119 243 7 0 360 602 709760382 709760140 1.160000e-110 411.0
44 TraesCS2B01G236100 chr7B 90.000 140 12 2 599 737 470986836 470986974 3.550000e-41 180.0
45 TraesCS2B01G236100 chr7B 94.737 114 5 1 595 708 548384356 548384244 4.590000e-40 176.0
46 TraesCS2B01G236100 chr4D 95.928 221 9 0 2327 2547 466320135 466320355 4.250000e-95 359.0
47 TraesCS2B01G236100 chr4D 95.928 221 9 0 2327 2547 471173436 471173216 4.250000e-95 359.0
48 TraesCS2B01G236100 chr4D 95.238 42 2 0 3684 3725 472708145 472708186 2.880000e-07 67.6
49 TraesCS2B01G236100 chr4D 100.000 28 0 0 3681 3708 403011913 403011940 8.000000e-03 52.8
50 TraesCS2B01G236100 chr3B 93.443 122 7 1 589 710 576562879 576562759 3.550000e-41 180.0
51 TraesCS2B01G236100 chr3B 87.209 86 11 0 3684 3769 505014402 505014487 1.020000e-16 99.0
52 TraesCS2B01G236100 chr7A 72.624 526 135 9 2549 3069 617703895 617703374 9.940000e-37 165.0
53 TraesCS2B01G236100 chr7A 88.182 110 7 4 4148 4257 728239408 728239305 4.690000e-25 126.0
54 TraesCS2B01G236100 chr7A 88.182 110 7 4 4148 4257 728456531 728456634 4.690000e-25 126.0
55 TraesCS2B01G236100 chr7A 93.182 44 3 0 3725 3768 634386481 634386524 1.040000e-06 65.8
56 TraesCS2B01G236100 chr7A 92.683 41 3 0 3728 3768 26030856 26030896 4.820000e-05 60.2
57 TraesCS2B01G236100 chr7A 88.889 45 4 1 3683 3726 689832598 689832642 2.000000e-03 54.7
58 TraesCS2B01G236100 chr7D 90.000 110 5 4 4148 4257 637573305 637573202 2.170000e-28 137.0
59 TraesCS2B01G236100 chr1D 89.412 85 9 0 3684 3768 350947689 350947605 1.700000e-19 108.0
60 TraesCS2B01G236100 chr1D 92.157 51 4 0 4304 4354 453571678 453571628 6.200000e-09 73.1
61 TraesCS2B01G236100 chr1D 94.737 38 1 1 3737 3774 447468578 447468614 1.740000e-04 58.4
62 TraesCS2B01G236100 chr1D 100.000 29 0 0 3682 3710 462903820 462903848 2.000000e-03 54.7
63 TraesCS2B01G236100 chr1D 100.000 28 0 0 3681 3708 187811384 187811411 8.000000e-03 52.8
64 TraesCS2B01G236100 chr1D 96.875 32 0 1 3679 3710 475822723 475822693 8.000000e-03 52.8
65 TraesCS2B01G236100 chr3D 87.952 83 10 0 3689 3771 247881652 247881570 1.020000e-16 99.0
66 TraesCS2B01G236100 chr3D 90.909 55 5 0 4304 4358 8506769 8506715 1.720000e-09 75.0
67 TraesCS2B01G236100 chr3D 94.872 39 2 0 3731 3769 291230712 291230750 1.340000e-05 62.1
68 TraesCS2B01G236100 chr3A 87.952 83 10 0 3689 3771 256236355 256236273 1.020000e-16 99.0
69 TraesCS2B01G236100 chr3A 97.059 34 0 1 3674 3707 12912159 12912191 6.240000e-04 56.5
70 TraesCS2B01G236100 chr5A 83.333 90 11 4 3684 3771 279115819 279115732 3.700000e-11 80.5
71 TraesCS2B01G236100 chr6D 100.000 32 0 0 3737 3768 436759072 436759041 4.820000e-05 60.2
72 TraesCS2B01G236100 chr6D 100.000 32 0 0 3738 3769 461925712 461925743 4.820000e-05 60.2
73 TraesCS2B01G236100 chr4A 92.857 42 2 1 3684 3725 679716420 679716460 4.820000e-05 60.2
74 TraesCS2B01G236100 chr4A 100.000 31 0 0 3680 3710 596481540 596481510 1.740000e-04 58.4
75 TraesCS2B01G236100 chr4A 97.059 34 0 1 3675 3708 55563135 55563103 6.240000e-04 56.5
76 TraesCS2B01G236100 chr5D 100.000 29 0 0 3682 3710 391976266 391976238 2.000000e-03 54.7
77 TraesCS2B01G236100 chr5D 100.000 29 0 0 3680 3708 488871679 488871707 2.000000e-03 54.7
78 TraesCS2B01G236100 chr5D 94.286 35 1 1 3674 3708 557217017 557217050 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G236100 chr2B 236455427 236459892 4465 False 8248.000 8248 100.00000 1 4466 1 chr2B.!!$F3 4465
1 TraesCS2B01G236100 chr2D 179660702 179664700 3998 False 1593.925 4843 93.74650 1 4466 4 chr2D.!!$F1 4465
2 TraesCS2B01G236100 chr2A 194121422 194125298 3876 False 1490.000 2867 94.35475 1 4466 4 chr2A.!!$F1 4465
3 TraesCS2B01G236100 chr1B 123966495 123968038 1543 True 1408.000 1408 83.31200 881 2426 1 chr1B.!!$R1 1545
4 TraesCS2B01G236100 chr1A 96462641 96464125 1484 False 1264.000 1264 82.17400 968 2464 1 chr1A.!!$F1 1496
5 TraesCS2B01G236100 chr1A 96470365 96471914 1549 False 1031.000 1031 79.11700 883 2465 1 chr1A.!!$F2 1582
6 TraesCS2B01G236100 chr6A 573365 574713 1348 True 1077.000 1077 81.43800 968 2303 1 chr6A.!!$R1 1335
7 TraesCS2B01G236100 chr5B 610663131 610664610 1479 True 990.000 990 79.15800 997 2461 1 chr5B.!!$R1 1464
8 TraesCS2B01G236100 chrUn 217765695 217766781 1086 True 797.000 797 80.10800 1209 2303 1 chrUn.!!$R2 1094
9 TraesCS2B01G236100 chrUn 246306873 246307959 1086 True 797.000 797 80.10800 1209 2303 1 chrUn.!!$R3 1094
10 TraesCS2B01G236100 chr6B 3824671 3825683 1012 True 730.000 730 80.24900 892 1904 1 chr6B.!!$R1 1012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 623 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.0 44.66 2.17 F
620 626 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.0 44.66 2.24 F
706 712 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.0 46.06 2.73 F
1656 1740 0.755327 GCCCCTGGAACGGCAATATT 60.755 55.000 7.49 0.0 45.01 1.28 F
3260 3374 1.899814 TGAAAGCACTAGACCCACGAT 59.100 47.619 0.00 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1740 1.004560 CTCTGGCACGAGGCTGAAA 60.005 57.895 15.49 0.0 45.23 2.69 R
2214 2319 4.451900 CACTGTACTGTTCTTGGAGGTTT 58.548 43.478 2.16 0.0 0.00 3.27 R
3260 3374 1.209504 GGATTTGGACGATCTGACCCA 59.790 52.381 0.00 0.0 0.00 4.51 R
3387 3501 1.344763 CTGTTCTCCGTCTGGGAAGTT 59.655 52.381 0.00 0.0 46.61 2.66 R
4102 4244 0.040058 TGTCAATCCAGCCAAGCCAT 59.960 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.272731 GCCTTCGTTTAAATATTCCAAGTCAAC 59.727 37.037 0.00 0.00 0.00 3.18
86 87 2.029020 GCTTCACACCATTTTTCTCCCC 60.029 50.000 0.00 0.00 0.00 4.81
143 149 5.357878 TCAGATATTGGCATTTCTGTTCACC 59.642 40.000 16.54 0.00 38.78 4.02
218 224 4.037446 GGCACAAAACAGTACTTCATCCAA 59.963 41.667 0.00 0.00 0.00 3.53
322 328 2.349817 GCAATTGAAGTGAGGTGACACG 60.350 50.000 10.34 0.00 44.35 4.49
338 344 5.448438 GTGACACGACATAAATCAAGCAAA 58.552 37.500 0.00 0.00 0.00 3.68
353 359 4.862018 TCAAGCAAAGAAAAGAAAACACCG 59.138 37.500 0.00 0.00 0.00 4.94
354 360 4.450082 AGCAAAGAAAAGAAAACACCGT 57.550 36.364 0.00 0.00 0.00 4.83
355 361 4.816392 AGCAAAGAAAAGAAAACACCGTT 58.184 34.783 0.00 0.00 0.00 4.44
356 362 5.956642 AGCAAAGAAAAGAAAACACCGTTA 58.043 33.333 0.00 0.00 0.00 3.18
357 363 6.033966 AGCAAAGAAAAGAAAACACCGTTAG 58.966 36.000 0.00 0.00 0.00 2.34
358 364 5.803461 GCAAAGAAAAGAAAACACCGTTAGT 59.197 36.000 0.00 0.00 0.00 2.24
359 365 6.020916 GCAAAGAAAAGAAAACACCGTTAGTC 60.021 38.462 0.00 0.00 0.00 2.59
360 366 6.997239 AAGAAAAGAAAACACCGTTAGTCT 57.003 33.333 0.00 0.00 0.00 3.24
361 367 6.359480 AGAAAAGAAAACACCGTTAGTCTG 57.641 37.500 0.00 0.00 0.00 3.51
362 368 5.296035 AGAAAAGAAAACACCGTTAGTCTGG 59.704 40.000 0.00 0.00 0.00 3.86
363 369 3.832615 AGAAAACACCGTTAGTCTGGT 57.167 42.857 0.00 0.00 39.66 4.00
364 370 4.146745 AGAAAACACCGTTAGTCTGGTT 57.853 40.909 0.00 0.00 35.96 3.67
365 371 3.875134 AGAAAACACCGTTAGTCTGGTTG 59.125 43.478 0.00 0.00 35.96 3.77
366 372 2.994186 AACACCGTTAGTCTGGTTGT 57.006 45.000 0.00 0.00 35.96 3.32
367 373 4.405116 AAACACCGTTAGTCTGGTTGTA 57.595 40.909 0.00 0.00 35.96 2.41
368 374 4.405116 AACACCGTTAGTCTGGTTGTAA 57.595 40.909 0.00 0.00 35.96 2.41
369 375 4.612264 ACACCGTTAGTCTGGTTGTAAT 57.388 40.909 0.00 0.00 35.96 1.89
370 376 4.312443 ACACCGTTAGTCTGGTTGTAATG 58.688 43.478 0.00 0.00 35.96 1.90
371 377 3.682858 CACCGTTAGTCTGGTTGTAATGG 59.317 47.826 0.00 0.00 38.36 3.16
372 378 3.267483 CCGTTAGTCTGGTTGTAATGGG 58.733 50.000 0.00 0.00 31.60 4.00
373 379 3.307199 CCGTTAGTCTGGTTGTAATGGGT 60.307 47.826 0.00 0.00 31.60 4.51
374 380 4.081531 CCGTTAGTCTGGTTGTAATGGGTA 60.082 45.833 0.00 0.00 31.60 3.69
375 381 5.107133 CGTTAGTCTGGTTGTAATGGGTAG 58.893 45.833 0.00 0.00 0.00 3.18
376 382 5.337009 CGTTAGTCTGGTTGTAATGGGTAGT 60.337 44.000 0.00 0.00 0.00 2.73
377 383 6.127647 CGTTAGTCTGGTTGTAATGGGTAGTA 60.128 42.308 0.00 0.00 0.00 1.82
378 384 7.417116 CGTTAGTCTGGTTGTAATGGGTAGTAT 60.417 40.741 0.00 0.00 0.00 2.12
379 385 6.481434 AGTCTGGTTGTAATGGGTAGTATC 57.519 41.667 0.00 0.00 0.00 2.24
380 386 5.962031 AGTCTGGTTGTAATGGGTAGTATCA 59.038 40.000 0.00 0.00 0.00 2.15
381 387 6.615726 AGTCTGGTTGTAATGGGTAGTATCAT 59.384 38.462 0.00 0.00 0.00 2.45
382 388 7.787904 AGTCTGGTTGTAATGGGTAGTATCATA 59.212 37.037 0.00 0.00 0.00 2.15
383 389 8.426489 GTCTGGTTGTAATGGGTAGTATCATAA 58.574 37.037 0.00 0.00 0.00 1.90
384 390 8.647796 TCTGGTTGTAATGGGTAGTATCATAAG 58.352 37.037 0.00 0.00 0.00 1.73
385 391 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
386 392 8.774183 TGGTTGTAATGGGTAGTATCATAAGTT 58.226 33.333 0.00 0.00 0.00 2.66
396 402 9.804758 GGGTAGTATCATAAGTTAGTATCATGC 57.195 37.037 0.00 0.00 0.00 4.06
426 432 9.696572 TGATACTAGTGTATGATATTACCTCCC 57.303 37.037 5.39 0.00 39.29 4.30
427 433 9.924010 GATACTAGTGTATGATATTACCTCCCT 57.076 37.037 5.39 0.00 39.29 4.20
479 485 9.350357 CATAGATGACTTTATTTATTGCCATGC 57.650 33.333 0.00 0.00 0.00 4.06
480 486 7.350744 AGATGACTTTATTTATTGCCATGCA 57.649 32.000 0.00 0.00 36.47 3.96
481 487 7.959175 AGATGACTTTATTTATTGCCATGCAT 58.041 30.769 0.00 0.00 38.76 3.96
482 488 7.870954 AGATGACTTTATTTATTGCCATGCATG 59.129 33.333 20.19 20.19 38.76 4.06
483 489 7.110043 TGACTTTATTTATTGCCATGCATGA 57.890 32.000 28.31 8.76 38.76 3.07
484 490 6.979817 TGACTTTATTTATTGCCATGCATGAC 59.020 34.615 28.31 17.77 38.76 3.06
485 491 6.876155 ACTTTATTTATTGCCATGCATGACA 58.124 32.000 28.31 20.53 38.76 3.58
486 492 6.757947 ACTTTATTTATTGCCATGCATGACAC 59.242 34.615 28.31 16.49 38.76 3.67
487 493 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
488 494 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
489 495 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
490 496 3.720949 ATTGCCATGCATGACACATAC 57.279 42.857 28.31 8.36 38.76 2.39
491 497 2.423446 TGCCATGCATGACACATACT 57.577 45.000 28.31 0.00 31.71 2.12
492 498 3.557228 TGCCATGCATGACACATACTA 57.443 42.857 28.31 0.00 31.71 1.82
493 499 3.469739 TGCCATGCATGACACATACTAG 58.530 45.455 28.31 8.01 31.71 2.57
494 500 3.118298 TGCCATGCATGACACATACTAGT 60.118 43.478 28.31 0.00 31.71 2.57
495 501 3.249320 GCCATGCATGACACATACTAGTG 59.751 47.826 28.31 7.28 44.93 2.74
496 502 7.601456 TGCCATGCATGACACATACTAGTGT 62.601 44.000 28.31 0.00 44.07 3.55
497 503 8.307927 TGCCATGCATGACACATACTAGTGTA 62.308 42.308 28.31 2.94 42.57 2.90
498 504 9.976056 TGCCATGCATGACACATACTAGTGTAG 62.976 44.444 28.31 5.81 42.57 2.74
515 521 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
516 522 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
543 549 8.661752 TCATGATATGATACTCAACCATCTCT 57.338 34.615 0.00 0.00 33.59 3.10
544 550 9.097946 TCATGATATGATACTCAACCATCTCTT 57.902 33.333 0.00 0.00 33.59 2.85
547 553 9.593565 TGATATGATACTCAACCATCTCTTACT 57.406 33.333 0.00 0.00 0.00 2.24
550 556 7.718334 TGATACTCAACCATCTCTTACTTCA 57.282 36.000 0.00 0.00 0.00 3.02
551 557 8.311395 TGATACTCAACCATCTCTTACTTCAT 57.689 34.615 0.00 0.00 0.00 2.57
552 558 8.762645 TGATACTCAACCATCTCTTACTTCATT 58.237 33.333 0.00 0.00 0.00 2.57
553 559 9.606631 GATACTCAACCATCTCTTACTTCATTT 57.393 33.333 0.00 0.00 0.00 2.32
556 562 9.965902 ACTCAACCATCTCTTACTTCATTTAAT 57.034 29.630 0.00 0.00 0.00 1.40
567 573 9.679661 TCTTACTTCATTTAATTCTATGCCACA 57.320 29.630 0.00 0.00 0.00 4.17
570 576 8.523915 ACTTCATTTAATTCTATGCCACATCA 57.476 30.769 0.00 0.00 0.00 3.07
571 577 9.139734 ACTTCATTTAATTCTATGCCACATCAT 57.860 29.630 0.00 0.00 0.00 2.45
572 578 9.622004 CTTCATTTAATTCTATGCCACATCATC 57.378 33.333 0.00 0.00 0.00 2.92
573 579 8.694581 TCATTTAATTCTATGCCACATCATCA 57.305 30.769 0.00 0.00 0.00 3.07
574 580 9.134055 TCATTTAATTCTATGCCACATCATCAA 57.866 29.630 0.00 0.00 0.00 2.57
575 581 9.752961 CATTTAATTCTATGCCACATCATCAAA 57.247 29.630 0.00 0.00 0.00 2.69
576 582 9.976511 ATTTAATTCTATGCCACATCATCAAAG 57.023 29.630 0.00 0.00 0.00 2.77
577 583 8.523915 TTAATTCTATGCCACATCATCAAAGT 57.476 30.769 0.00 0.00 0.00 2.66
578 584 7.414222 AATTCTATGCCACATCATCAAAGTT 57.586 32.000 0.00 0.00 0.00 2.66
579 585 5.823209 TCTATGCCACATCATCAAAGTTG 57.177 39.130 0.00 0.00 0.00 3.16
580 586 2.728690 TGCCACATCATCAAAGTTGC 57.271 45.000 0.00 0.00 0.00 4.17
581 587 1.273048 TGCCACATCATCAAAGTTGCC 59.727 47.619 0.00 0.00 0.00 4.52
582 588 1.547372 GCCACATCATCAAAGTTGCCT 59.453 47.619 0.00 0.00 0.00 4.75
583 589 2.754552 GCCACATCATCAAAGTTGCCTA 59.245 45.455 0.00 0.00 0.00 3.93
584 590 3.181493 GCCACATCATCAAAGTTGCCTAG 60.181 47.826 0.00 0.00 0.00 3.02
585 591 4.012374 CCACATCATCAAAGTTGCCTAGT 58.988 43.478 0.00 0.00 0.00 2.57
586 592 4.460382 CCACATCATCAAAGTTGCCTAGTT 59.540 41.667 0.00 0.00 0.00 2.24
587 593 5.396484 CACATCATCAAAGTTGCCTAGTTG 58.604 41.667 0.00 0.00 0.00 3.16
588 594 4.460382 ACATCATCAAAGTTGCCTAGTTGG 59.540 41.667 0.00 0.00 39.35 3.77
589 595 4.098914 TCATCAAAGTTGCCTAGTTGGT 57.901 40.909 0.00 0.00 38.35 3.67
590 596 5.235850 TCATCAAAGTTGCCTAGTTGGTA 57.764 39.130 0.00 0.00 38.35 3.25
591 597 5.815581 TCATCAAAGTTGCCTAGTTGGTAT 58.184 37.500 0.00 0.00 38.35 2.73
592 598 5.647658 TCATCAAAGTTGCCTAGTTGGTATG 59.352 40.000 0.00 0.00 38.35 2.39
593 599 3.756434 TCAAAGTTGCCTAGTTGGTATGC 59.244 43.478 0.00 0.00 38.35 3.14
594 600 3.433306 AAGTTGCCTAGTTGGTATGCA 57.567 42.857 0.00 0.00 38.35 3.96
595 601 3.652057 AGTTGCCTAGTTGGTATGCAT 57.348 42.857 3.79 3.79 32.90 3.96
596 602 3.282021 AGTTGCCTAGTTGGTATGCATG 58.718 45.455 10.16 0.00 32.90 4.06
597 603 3.054434 AGTTGCCTAGTTGGTATGCATGA 60.054 43.478 10.16 0.00 32.90 3.07
598 604 3.862877 TGCCTAGTTGGTATGCATGAT 57.137 42.857 10.16 0.00 38.35 2.45
599 605 4.972751 TGCCTAGTTGGTATGCATGATA 57.027 40.909 10.16 0.00 38.35 2.15
600 606 4.641396 TGCCTAGTTGGTATGCATGATAC 58.359 43.478 10.16 0.00 38.35 2.24
601 607 4.347876 TGCCTAGTTGGTATGCATGATACT 59.652 41.667 10.16 9.74 37.64 2.12
602 608 4.932200 GCCTAGTTGGTATGCATGATACTC 59.068 45.833 10.16 0.00 37.64 2.59
603 609 5.482908 CCTAGTTGGTATGCATGATACTCC 58.517 45.833 10.16 3.03 37.64 3.85
604 610 4.357918 AGTTGGTATGCATGATACTCCC 57.642 45.455 10.16 0.00 37.64 4.30
605 611 3.976654 AGTTGGTATGCATGATACTCCCT 59.023 43.478 10.16 0.00 37.64 4.20
606 612 4.040952 AGTTGGTATGCATGATACTCCCTC 59.959 45.833 10.16 0.00 37.64 4.30
607 613 2.906389 TGGTATGCATGATACTCCCTCC 59.094 50.000 10.16 0.00 37.64 4.30
608 614 2.093973 GGTATGCATGATACTCCCTCCG 60.094 54.545 10.16 0.00 37.64 4.63
609 615 1.722034 ATGCATGATACTCCCTCCGT 58.278 50.000 0.00 0.00 0.00 4.69
610 616 1.040646 TGCATGATACTCCCTCCGTC 58.959 55.000 0.00 0.00 0.00 4.79
611 617 0.318762 GCATGATACTCCCTCCGTCC 59.681 60.000 0.00 0.00 0.00 4.79
612 618 0.598562 CATGATACTCCCTCCGTCCG 59.401 60.000 0.00 0.00 0.00 4.79
613 619 0.539901 ATGATACTCCCTCCGTCCGG 60.540 60.000 0.00 0.00 0.00 5.14
614 620 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
615 621 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
616 622 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
617 623 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
618 624 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
619 625 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
620 626 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
621 627 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
622 628 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
623 629 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
624 630 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
625 631 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
626 632 1.403249 CCGTCCGGAATTACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
627 633 2.159393 CCGTCCGGAATTACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
628 634 3.103738 CGTCCGGAATTACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
629 635 3.181507 CGTCCGGAATTACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
630 636 4.672542 CGTCCGGAATTACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
631 637 5.163513 GTCCGGAATTACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
632 638 5.809051 GTCCGGAATTACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
633 639 5.808540 TCCGGAATTACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
634 640 5.006358 CCGGAATTACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
635 641 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
636 642 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
637 643 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
638 644 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
639 645 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
640 646 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
641 647 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
642 648 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
643 649 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
644 650 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
645 651 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
646 652 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
647 653 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
648 654 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
649 655 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
694 700 9.887406 TCATTTTTAAGACAAGTAATTCCGAAC 57.113 29.630 0.00 0.00 0.00 3.95
695 701 8.837059 CATTTTTAAGACAAGTAATTCCGAACG 58.163 33.333 0.00 0.00 0.00 3.95
696 702 6.470557 TTTAAGACAAGTAATTCCGAACGG 57.529 37.500 6.94 6.94 0.00 4.44
697 703 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
698 704 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
699 705 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
700 706 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
701 707 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
702 708 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
703 709 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
704 710 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
705 711 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
706 712 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
707 713 0.911769 TCCGAACGGAGGGAGTACTA 59.088 55.000 12.04 0.00 39.76 1.82
708 714 1.134280 TCCGAACGGAGGGAGTACTAG 60.134 57.143 12.04 0.00 39.76 2.57
709 715 0.662085 CGAACGGAGGGAGTACTAGC 59.338 60.000 0.00 0.00 0.00 3.42
710 716 1.746516 CGAACGGAGGGAGTACTAGCT 60.747 57.143 0.00 0.00 0.00 3.32
711 717 2.484417 CGAACGGAGGGAGTACTAGCTA 60.484 54.545 0.00 0.00 0.00 3.32
712 718 3.753815 GAACGGAGGGAGTACTAGCTAT 58.246 50.000 0.00 0.00 0.00 2.97
713 719 3.143211 ACGGAGGGAGTACTAGCTATG 57.857 52.381 0.00 0.00 0.00 2.23
714 720 2.709934 ACGGAGGGAGTACTAGCTATGA 59.290 50.000 0.00 0.00 0.00 2.15
715 721 3.331294 ACGGAGGGAGTACTAGCTATGAT 59.669 47.826 0.00 0.00 0.00 2.45
716 722 4.535294 ACGGAGGGAGTACTAGCTATGATA 59.465 45.833 0.00 0.00 0.00 2.15
717 723 4.877251 CGGAGGGAGTACTAGCTATGATAC 59.123 50.000 0.00 0.00 0.00 2.24
718 724 5.338544 CGGAGGGAGTACTAGCTATGATACT 60.339 48.000 10.65 10.65 0.00 2.12
719 725 6.117488 GGAGGGAGTACTAGCTATGATACTC 58.883 48.000 21.12 21.12 41.81 2.59
727 733 9.809395 AGTACTAGCTATGATACTCCAATTACA 57.191 33.333 0.00 0.00 0.00 2.41
730 736 8.368668 ACTAGCTATGATACTCCAATTACAACC 58.631 37.037 0.00 0.00 0.00 3.77
731 737 7.136822 AGCTATGATACTCCAATTACAACCA 57.863 36.000 0.00 0.00 0.00 3.67
732 738 7.220030 AGCTATGATACTCCAATTACAACCAG 58.780 38.462 0.00 0.00 0.00 4.00
733 739 6.073003 GCTATGATACTCCAATTACAACCAGC 60.073 42.308 0.00 0.00 0.00 4.85
734 740 4.523083 TGATACTCCAATTACAACCAGCC 58.477 43.478 0.00 0.00 0.00 4.85
797 825 2.481854 CTACTATTCAGCAGCAGCAGG 58.518 52.381 3.17 0.00 45.49 4.85
798 826 0.107312 ACTATTCAGCAGCAGCAGGG 60.107 55.000 3.17 0.00 45.49 4.45
799 827 1.445716 CTATTCAGCAGCAGCAGGGC 61.446 60.000 3.17 0.00 45.49 5.19
952 987 0.674895 CTCCAAAGTTCAGGCTCCCG 60.675 60.000 0.00 0.00 0.00 5.14
958 993 2.119611 TTCAGGCTCCCGTCCTCA 59.880 61.111 0.00 0.00 0.00 3.86
989 1032 1.492599 GGCTATTCTTCCAAGCTCCCT 59.507 52.381 0.00 0.00 36.48 4.20
1284 1345 1.078426 CTCCTTGGAAATCGCCCGT 60.078 57.895 0.00 0.00 0.00 5.28
1329 1392 3.890674 GCCAAGAACCGGCTACTG 58.109 61.111 0.00 0.00 46.56 2.74
1368 1431 1.668826 TAGCCTCCAACTCCACCATT 58.331 50.000 0.00 0.00 0.00 3.16
1371 1434 0.038744 CCTCCAACTCCACCATTGCT 59.961 55.000 0.00 0.00 0.00 3.91
1656 1740 0.755327 GCCCCTGGAACGGCAATATT 60.755 55.000 7.49 0.00 45.01 1.28
2952 3066 1.937278 TCAGCCGTGTTTTAACGACA 58.063 45.000 0.00 0.00 46.49 4.35
3073 3187 4.571369 ATCATATCAGGCAGGAGGAATG 57.429 45.455 0.00 0.00 0.00 2.67
3260 3374 1.899814 TGAAAGCACTAGACCCACGAT 59.100 47.619 0.00 0.00 0.00 3.73
3309 3423 3.319122 GGTTTCTGGATGTGAATATGCCC 59.681 47.826 0.00 0.00 0.00 5.36
3387 3501 3.580022 TCTCAGATCTGTCTTCAAGCCAA 59.420 43.478 21.92 0.00 30.42 4.52
3400 3514 0.537371 AAGCCAAACTTCCCAGACGG 60.537 55.000 0.00 0.00 30.77 4.79
3402 3516 0.955919 GCCAAACTTCCCAGACGGAG 60.956 60.000 0.00 0.00 43.39 4.63
3420 3537 3.206150 GGAGAACAGCACAACTTCTCAA 58.794 45.455 8.48 0.00 41.14 3.02
3466 3583 7.566868 GCAATTCACATTTCCAAAGTTCGTAAC 60.567 37.037 0.00 0.00 0.00 2.50
3685 3804 7.900782 TGCAGAATGGAAACTACTTTACTAC 57.099 36.000 0.00 0.00 35.86 2.73
3687 3806 7.817962 TGCAGAATGGAAACTACTTTACTACTC 59.182 37.037 0.00 0.00 35.86 2.59
3688 3807 7.278203 GCAGAATGGAAACTACTTTACTACTCC 59.722 40.741 0.00 0.00 35.86 3.85
3689 3808 7.764901 CAGAATGGAAACTACTTTACTACTCCC 59.235 40.741 0.00 0.00 0.00 4.30
3690 3809 7.679025 AGAATGGAAACTACTTTACTACTCCCT 59.321 37.037 0.00 0.00 0.00 4.20
3692 3811 6.559429 TGGAAACTACTTTACTACTCCCTCT 58.441 40.000 0.00 0.00 0.00 3.69
3693 3812 6.436532 TGGAAACTACTTTACTACTCCCTCTG 59.563 42.308 0.00 0.00 0.00 3.35
3694 3813 6.436847 GGAAACTACTTTACTACTCCCTCTGT 59.563 42.308 0.00 0.00 0.00 3.41
3695 3814 7.039152 GGAAACTACTTTACTACTCCCTCTGTT 60.039 40.741 0.00 0.00 0.00 3.16
3696 3815 7.852550 AACTACTTTACTACTCCCTCTGTTT 57.147 36.000 0.00 0.00 0.00 2.83
3697 3816 7.465353 ACTACTTTACTACTCCCTCTGTTTC 57.535 40.000 0.00 0.00 0.00 2.78
3698 3817 7.240167 ACTACTTTACTACTCCCTCTGTTTCT 58.760 38.462 0.00 0.00 0.00 2.52
3699 3818 8.389366 ACTACTTTACTACTCCCTCTGTTTCTA 58.611 37.037 0.00 0.00 0.00 2.10
3700 3819 9.240734 CTACTTTACTACTCCCTCTGTTTCTAA 57.759 37.037 0.00 0.00 0.00 2.10
3701 3820 8.488308 ACTTTACTACTCCCTCTGTTTCTAAA 57.512 34.615 0.00 0.00 0.00 1.85
3702 3821 9.102453 ACTTTACTACTCCCTCTGTTTCTAAAT 57.898 33.333 0.00 0.00 0.00 1.40
3710 3829 9.268282 ACTCCCTCTGTTTCTAAATATAAGACA 57.732 33.333 0.00 0.00 0.00 3.41
3711 3830 9.535878 CTCCCTCTGTTTCTAAATATAAGACAC 57.464 37.037 0.00 0.00 0.00 3.67
3712 3831 9.268282 TCCCTCTGTTTCTAAATATAAGACACT 57.732 33.333 6.09 0.00 0.00 3.55
3713 3832 9.892130 CCCTCTGTTTCTAAATATAAGACACTT 57.108 33.333 6.09 0.00 0.00 3.16
3717 3836 9.774742 CTGTTTCTAAATATAAGACACTTTGGC 57.225 33.333 0.00 0.00 0.00 4.52
3718 3837 9.290988 TGTTTCTAAATATAAGACACTTTGGCA 57.709 29.630 0.00 0.00 0.00 4.92
3719 3838 9.774742 GTTTCTAAATATAAGACACTTTGGCAG 57.225 33.333 0.00 0.00 0.00 4.85
3720 3839 9.515226 TTTCTAAATATAAGACACTTTGGCAGT 57.485 29.630 0.00 0.00 35.35 4.40
3721 3840 9.515226 TTCTAAATATAAGACACTTTGGCAGTT 57.485 29.630 0.00 0.00 30.92 3.16
3722 3841 9.162764 TCTAAATATAAGACACTTTGGCAGTTC 57.837 33.333 0.00 0.00 30.92 3.01
3723 3842 7.759489 AAATATAAGACACTTTGGCAGTTCA 57.241 32.000 0.00 0.00 30.92 3.18
3724 3843 7.759489 AATATAAGACACTTTGGCAGTTCAA 57.241 32.000 0.00 0.00 30.92 2.69
3725 3844 7.944729 ATATAAGACACTTTGGCAGTTCAAT 57.055 32.000 0.00 0.00 30.92 2.57
3726 3845 4.574599 AAGACACTTTGGCAGTTCAATC 57.425 40.909 0.00 0.00 30.92 2.67
3727 3846 3.825328 AGACACTTTGGCAGTTCAATCT 58.175 40.909 0.00 0.00 30.92 2.40
3728 3847 4.973168 AGACACTTTGGCAGTTCAATCTA 58.027 39.130 0.00 0.00 30.92 1.98
3729 3848 5.564550 AGACACTTTGGCAGTTCAATCTAT 58.435 37.500 0.00 0.00 30.92 1.98
3730 3849 6.711277 AGACACTTTGGCAGTTCAATCTATA 58.289 36.000 0.00 0.00 30.92 1.31
3731 3850 6.595716 AGACACTTTGGCAGTTCAATCTATAC 59.404 38.462 0.00 0.00 30.92 1.47
3732 3851 6.476378 ACACTTTGGCAGTTCAATCTATACT 58.524 36.000 0.00 0.00 30.92 2.12
3733 3852 6.372659 ACACTTTGGCAGTTCAATCTATACTG 59.627 38.462 0.00 0.00 41.64 2.74
3741 3860 6.178507 CAGTTCAATCTATACTGCGAAAACG 58.821 40.000 0.00 0.00 33.63 3.60
3742 3861 5.867716 AGTTCAATCTATACTGCGAAAACGT 59.132 36.000 0.00 0.00 0.00 3.99
3743 3862 5.944049 TCAATCTATACTGCGAAAACGTC 57.056 39.130 0.00 0.00 0.00 4.34
3744 3863 5.647589 TCAATCTATACTGCGAAAACGTCT 58.352 37.500 0.00 0.00 0.00 4.18
3745 3864 6.097356 TCAATCTATACTGCGAAAACGTCTT 58.903 36.000 0.00 0.00 0.00 3.01
3746 3865 7.252708 TCAATCTATACTGCGAAAACGTCTTA 58.747 34.615 0.00 0.00 0.00 2.10
3747 3866 7.919091 TCAATCTATACTGCGAAAACGTCTTAT 59.081 33.333 0.00 0.00 0.00 1.73
3748 3867 9.177304 CAATCTATACTGCGAAAACGTCTTATA 57.823 33.333 0.00 0.00 0.00 0.98
3749 3868 9.909644 AATCTATACTGCGAAAACGTCTTATAT 57.090 29.630 0.00 0.00 0.00 0.86
3750 3869 9.909644 ATCTATACTGCGAAAACGTCTTATATT 57.090 29.630 0.00 0.00 0.00 1.28
3751 3870 9.740239 TCTATACTGCGAAAACGTCTTATATTT 57.260 29.630 0.00 0.00 0.00 1.40
3755 3874 8.415192 ACTGCGAAAACGTCTTATATTTATGA 57.585 30.769 0.00 0.00 0.00 2.15
3756 3875 8.875803 ACTGCGAAAACGTCTTATATTTATGAA 58.124 29.630 0.00 0.00 0.00 2.57
3757 3876 9.144085 CTGCGAAAACGTCTTATATTTATGAAC 57.856 33.333 0.00 0.00 0.00 3.18
3758 3877 8.657729 TGCGAAAACGTCTTATATTTATGAACA 58.342 29.630 0.00 0.00 0.00 3.18
3759 3878 9.144085 GCGAAAACGTCTTATATTTATGAACAG 57.856 33.333 0.00 0.00 0.00 3.16
3763 3882 8.888579 AACGTCTTATATTTATGAACAGAGGG 57.111 34.615 0.00 0.00 0.00 4.30
3764 3883 8.246430 ACGTCTTATATTTATGAACAGAGGGA 57.754 34.615 0.00 0.00 0.00 4.20
3765 3884 8.361139 ACGTCTTATATTTATGAACAGAGGGAG 58.639 37.037 0.00 0.00 0.00 4.30
3766 3885 8.361139 CGTCTTATATTTATGAACAGAGGGAGT 58.639 37.037 0.00 0.00 0.00 3.85
3775 3894 8.603898 TTATGAACAGAGGGAGTATTTAGACA 57.396 34.615 0.00 0.00 0.00 3.41
3825 3944 3.356290 AGTGTCTGCCTTTTCACAAACT 58.644 40.909 0.00 0.00 33.84 2.66
3865 3984 4.736168 GCGGTCATGGCATAATTTTGCTTA 60.736 41.667 18.46 9.94 42.38 3.09
3886 4005 2.449464 TGCTATTTGGCAGAAGCACAT 58.551 42.857 14.15 0.00 44.61 3.21
3987 4113 8.437742 CAAGTCAATTCAAATGATAAAACTGGC 58.562 33.333 0.00 0.00 0.00 4.85
3998 4124 5.432645 TGATAAAACTGGCAATATGGACGA 58.567 37.500 0.00 0.00 0.00 4.20
4038 4180 2.502745 TGCCTCTCCAGGGGATATTTT 58.497 47.619 0.00 0.00 40.75 1.82
4039 4181 2.858768 TGCCTCTCCAGGGGATATTTTT 59.141 45.455 0.00 0.00 40.75 1.94
4099 4241 8.046708 AGTATAAACTTGCAGAATACCACATGA 58.953 33.333 0.00 0.00 29.00 3.07
4102 4244 4.397420 ACTTGCAGAATACCACATGACAA 58.603 39.130 0.00 0.00 0.00 3.18
4159 4301 1.166531 GCAACTGGCTCGTTTGGAGT 61.167 55.000 0.00 0.00 45.03 3.85
4182 4324 7.454225 AGTCTCAAGAAAGTAAACTGGCTAAT 58.546 34.615 0.00 0.00 0.00 1.73
4279 4423 6.359804 CCAGAAAGGTCAGGATTGATATTCA 58.640 40.000 0.00 0.00 35.39 2.57
4367 4511 7.510685 AGTGAAGGATATTCCATAGCAGTTCTA 59.489 37.037 0.00 0.00 39.61 2.10
4398 4542 1.067915 TGGCCTTTTTGCAAGATACGC 60.068 47.619 3.32 0.00 0.00 4.42
4451 4595 7.595819 TTTCCACTTCCACAATTAAATCTGT 57.404 32.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.712917 ACTTGGAATATTTAAACGAAGGCCA 59.287 36.000 5.01 0.00 0.00 5.36
21 22 6.797995 GCGTTGACTTGGAATATTTAAACGAA 59.202 34.615 9.82 0.00 40.01 3.85
44 45 3.173247 GAAAAGTGGTTTTCCGGCG 57.827 52.632 0.00 0.00 44.02 6.46
92 94 0.950555 GATGCTGACTGTTGCCGACA 60.951 55.000 4.71 0.00 36.65 4.35
97 99 0.179145 GCCATGATGCTGACTGTTGC 60.179 55.000 0.00 0.76 0.00 4.17
99 101 1.271762 ACTGCCATGATGCTGACTGTT 60.272 47.619 7.62 0.00 34.63 3.16
185 191 3.069443 ACTGTTTTGTGCCATAGGGTTTG 59.931 43.478 0.00 0.00 36.17 2.93
338 344 5.296035 CCAGACTAACGGTGTTTTCTTTTCT 59.704 40.000 0.00 0.00 0.00 2.52
353 359 6.046290 ACTACCCATTACAACCAGACTAAC 57.954 41.667 0.00 0.00 0.00 2.34
354 360 7.620491 TGATACTACCCATTACAACCAGACTAA 59.380 37.037 0.00 0.00 0.00 2.24
355 361 7.127405 TGATACTACCCATTACAACCAGACTA 58.873 38.462 0.00 0.00 0.00 2.59
356 362 5.962031 TGATACTACCCATTACAACCAGACT 59.038 40.000 0.00 0.00 0.00 3.24
357 363 6.229936 TGATACTACCCATTACAACCAGAC 57.770 41.667 0.00 0.00 0.00 3.51
358 364 8.555896 TTATGATACTACCCATTACAACCAGA 57.444 34.615 0.00 0.00 0.00 3.86
359 365 8.429641 ACTTATGATACTACCCATTACAACCAG 58.570 37.037 0.00 0.00 0.00 4.00
360 366 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
370 376 9.804758 GCATGATACTAACTTATGATACTACCC 57.195 37.037 0.00 0.00 0.00 3.69
400 406 9.696572 GGGAGGTAATATCATACACTAGTATCA 57.303 37.037 0.00 0.00 38.88 2.15
401 407 9.924010 AGGGAGGTAATATCATACACTAGTATC 57.076 37.037 0.00 0.00 38.88 2.24
453 459 9.350357 GCATGGCAATAAATAAAGTCATCTATG 57.650 33.333 0.00 0.00 0.00 2.23
454 460 9.081204 TGCATGGCAATAAATAAAGTCATCTAT 57.919 29.630 0.00 0.00 34.76 1.98
455 461 8.462589 TGCATGGCAATAAATAAAGTCATCTA 57.537 30.769 0.00 0.00 34.76 1.98
456 462 7.350744 TGCATGGCAATAAATAAAGTCATCT 57.649 32.000 0.00 0.00 34.76 2.90
457 463 7.868922 TCATGCATGGCAATAAATAAAGTCATC 59.131 33.333 25.97 0.00 43.62 2.92
458 464 7.654520 GTCATGCATGGCAATAAATAAAGTCAT 59.345 33.333 26.04 0.00 43.62 3.06
459 465 6.979817 GTCATGCATGGCAATAAATAAAGTCA 59.020 34.615 26.04 0.00 43.62 3.41
460 466 6.979817 TGTCATGCATGGCAATAAATAAAGTC 59.020 34.615 30.82 0.00 43.62 3.01
461 467 6.757947 GTGTCATGCATGGCAATAAATAAAGT 59.242 34.615 34.01 0.00 44.94 2.66
462 468 6.757478 TGTGTCATGCATGGCAATAAATAAAG 59.243 34.615 34.01 0.00 44.94 1.85
463 469 6.637657 TGTGTCATGCATGGCAATAAATAAA 58.362 32.000 34.01 6.82 44.94 1.40
464 470 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
465 471 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
466 472 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
467 473 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
468 474 4.888823 AGTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
469 475 4.463070 AGTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 26.44 44.94 1.90
470 476 3.293337 AGTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
471 477 2.725637 AGTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
472 478 2.423446 AGTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
473 479 3.249320 CACTAGTATGTGTCATGCATGGC 59.751 47.826 24.40 24.40 33.61 4.40
474 480 4.445453 ACACTAGTATGTGTCATGCATGG 58.555 43.478 25.97 8.61 46.90 3.66
475 481 5.176406 GCTACACTAGTATGTGTCATGCATG 59.824 44.000 21.07 21.07 46.90 4.06
476 482 5.163416 TGCTACACTAGTATGTGTCATGCAT 60.163 40.000 3.46 0.00 46.90 3.96
477 483 4.159506 TGCTACACTAGTATGTGTCATGCA 59.840 41.667 3.46 10.15 46.90 3.96
478 484 4.682787 TGCTACACTAGTATGTGTCATGC 58.317 43.478 3.46 8.05 46.90 4.06
479 485 7.776933 AAATGCTACACTAGTATGTGTCATG 57.223 36.000 3.46 0.00 46.90 3.07
489 495 9.856488 CCGTATCATAATAAATGCTACACTAGT 57.144 33.333 0.00 0.00 0.00 2.57
490 496 9.856488 ACCGTATCATAATAAATGCTACACTAG 57.144 33.333 0.00 0.00 0.00 2.57
527 533 9.606631 AAATGAAGTAAGAGATGGTTGAGTATC 57.393 33.333 0.00 0.00 0.00 2.24
530 536 9.965902 ATTAAATGAAGTAAGAGATGGTTGAGT 57.034 29.630 0.00 0.00 0.00 3.41
541 547 9.679661 TGTGGCATAGAATTAAATGAAGTAAGA 57.320 29.630 0.00 0.00 0.00 2.10
544 550 9.625747 TGATGTGGCATAGAATTAAATGAAGTA 57.374 29.630 0.00 0.00 0.00 2.24
545 551 8.523915 TGATGTGGCATAGAATTAAATGAAGT 57.476 30.769 0.00 0.00 0.00 3.01
546 552 9.622004 GATGATGTGGCATAGAATTAAATGAAG 57.378 33.333 0.00 0.00 0.00 3.02
547 553 9.134055 TGATGATGTGGCATAGAATTAAATGAA 57.866 29.630 0.00 0.00 0.00 2.57
548 554 8.694581 TGATGATGTGGCATAGAATTAAATGA 57.305 30.769 0.00 0.00 0.00 2.57
549 555 9.752961 TTTGATGATGTGGCATAGAATTAAATG 57.247 29.630 0.00 0.00 0.00 2.32
550 556 9.976511 CTTTGATGATGTGGCATAGAATTAAAT 57.023 29.630 0.00 0.00 0.00 1.40
551 557 8.970020 ACTTTGATGATGTGGCATAGAATTAAA 58.030 29.630 0.00 0.00 0.00 1.52
552 558 8.523915 ACTTTGATGATGTGGCATAGAATTAA 57.476 30.769 0.00 0.00 0.00 1.40
553 559 8.407832 CAACTTTGATGATGTGGCATAGAATTA 58.592 33.333 0.00 0.00 0.00 1.40
554 560 7.262772 CAACTTTGATGATGTGGCATAGAATT 58.737 34.615 0.00 0.00 0.00 2.17
555 561 6.682113 GCAACTTTGATGATGTGGCATAGAAT 60.682 38.462 0.00 0.00 33.61 2.40
556 562 5.393352 GCAACTTTGATGATGTGGCATAGAA 60.393 40.000 0.00 0.00 33.61 2.10
557 563 4.096833 GCAACTTTGATGATGTGGCATAGA 59.903 41.667 0.00 0.00 33.61 1.98
558 564 4.357142 GCAACTTTGATGATGTGGCATAG 58.643 43.478 0.00 0.00 33.61 2.23
559 565 3.130869 GGCAACTTTGATGATGTGGCATA 59.869 43.478 0.00 0.00 34.76 3.14
560 566 2.093869 GGCAACTTTGATGATGTGGCAT 60.094 45.455 0.00 0.00 34.76 4.40
561 567 1.273048 GGCAACTTTGATGATGTGGCA 59.727 47.619 0.00 0.00 34.76 4.92
562 568 2.000429 GGCAACTTTGATGATGTGGC 58.000 50.000 0.00 0.00 32.84 5.01
574 580 8.597925 GTATCATGCATACCAACTAGGCAACTT 61.598 40.741 0.00 0.00 44.97 2.66
575 581 7.186873 GTATCATGCATACCAACTAGGCAACT 61.187 42.308 0.00 0.00 44.97 3.16
576 582 3.278574 TCATGCATACCAACTAGGCAAC 58.721 45.455 0.00 0.00 44.97 4.17
577 583 3.643199 TCATGCATACCAACTAGGCAA 57.357 42.857 0.00 0.00 44.97 4.52
578 584 3.862877 ATCATGCATACCAACTAGGCA 57.137 42.857 0.00 0.00 45.84 4.75
579 585 4.899502 AGTATCATGCATACCAACTAGGC 58.100 43.478 0.00 0.00 43.14 3.93
580 586 5.482908 GGAGTATCATGCATACCAACTAGG 58.517 45.833 0.00 0.00 38.62 3.02
581 587 5.247110 AGGGAGTATCATGCATACCAACTAG 59.753 44.000 0.00 0.00 38.62 2.57
582 588 5.155161 AGGGAGTATCATGCATACCAACTA 58.845 41.667 0.00 0.00 38.62 2.24
583 589 3.976654 AGGGAGTATCATGCATACCAACT 59.023 43.478 0.00 0.53 38.62 3.16
584 590 4.319177 GAGGGAGTATCATGCATACCAAC 58.681 47.826 0.00 0.00 38.62 3.77
585 591 3.327757 GGAGGGAGTATCATGCATACCAA 59.672 47.826 0.00 0.00 38.62 3.67
586 592 2.906389 GGAGGGAGTATCATGCATACCA 59.094 50.000 0.00 0.00 38.62 3.25
587 593 2.093973 CGGAGGGAGTATCATGCATACC 60.094 54.545 0.00 0.00 38.62 2.73
588 594 2.563179 ACGGAGGGAGTATCATGCATAC 59.437 50.000 0.00 0.00 38.16 2.39
589 595 2.826128 GACGGAGGGAGTATCATGCATA 59.174 50.000 0.00 0.00 36.25 3.14
590 596 1.620819 GACGGAGGGAGTATCATGCAT 59.379 52.381 0.00 0.00 36.25 3.96
591 597 1.040646 GACGGAGGGAGTATCATGCA 58.959 55.000 0.00 0.00 36.25 3.96
592 598 0.318762 GGACGGAGGGAGTATCATGC 59.681 60.000 0.00 0.00 36.25 4.06
593 599 0.598562 CGGACGGAGGGAGTATCATG 59.401 60.000 0.00 0.00 36.25 3.07
594 600 0.539901 CCGGACGGAGGGAGTATCAT 60.540 60.000 4.40 0.00 34.77 2.45
595 601 1.152819 CCGGACGGAGGGAGTATCA 60.153 63.158 4.40 0.00 34.77 2.15
596 602 0.466922 TTCCGGACGGAGGGAGTATC 60.467 60.000 13.64 0.00 46.06 2.24
597 603 0.187851 ATTCCGGACGGAGGGAGTAT 59.812 55.000 13.64 0.61 46.06 2.12
598 604 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
599 605 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
600 606 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
601 607 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
602 608 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
603 609 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
604 610 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
605 611 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
606 612 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
607 613 1.986698 ACGACAAGTAATTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
608 614 4.361451 TCTACGACAAGTAATTCCGGAC 57.639 45.455 1.83 0.00 34.45 4.79
609 615 5.389859 TTTCTACGACAAGTAATTCCGGA 57.610 39.130 0.00 0.00 34.45 5.14
610 616 5.006358 CCATTTCTACGACAAGTAATTCCGG 59.994 44.000 0.00 0.00 34.45 5.14
611 617 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
612 618 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
613 619 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
614 620 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
615 621 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
616 622 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
617 623 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
618 624 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
619 625 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
620 626 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
621 627 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
622 628 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
623 629 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
668 674 9.887406 GTTCGGAATTACTTGTCTTAAAAATGA 57.113 29.630 0.00 0.00 0.00 2.57
669 675 8.837059 CGTTCGGAATTACTTGTCTTAAAAATG 58.163 33.333 0.00 0.00 0.00 2.32
670 676 8.019094 CCGTTCGGAATTACTTGTCTTAAAAAT 58.981 33.333 5.19 0.00 0.00 1.82
671 677 7.226325 TCCGTTCGGAATTACTTGTCTTAAAAA 59.774 33.333 11.66 0.00 0.00 1.94
672 678 6.705381 TCCGTTCGGAATTACTTGTCTTAAAA 59.295 34.615 11.66 0.00 0.00 1.52
673 679 6.222389 TCCGTTCGGAATTACTTGTCTTAAA 58.778 36.000 11.66 0.00 0.00 1.52
674 680 5.782047 TCCGTTCGGAATTACTTGTCTTAA 58.218 37.500 11.66 0.00 0.00 1.85
675 681 5.389859 TCCGTTCGGAATTACTTGTCTTA 57.610 39.130 11.66 0.00 0.00 2.10
676 682 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
677 683 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
678 684 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
679 685 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
680 686 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
681 687 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
682 688 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
683 689 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
684 690 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
685 691 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
686 692 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
687 693 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
688 694 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
689 695 1.307097 CTAGTACTCCCTCCGTTCGG 58.693 60.000 0.00 4.74 0.00 4.30
690 696 0.662085 GCTAGTACTCCCTCCGTTCG 59.338 60.000 0.00 0.00 0.00 3.95
691 697 2.055684 AGCTAGTACTCCCTCCGTTC 57.944 55.000 0.00 0.00 0.00 3.95
692 698 3.137913 TCATAGCTAGTACTCCCTCCGTT 59.862 47.826 0.00 0.00 0.00 4.44
693 699 2.709934 TCATAGCTAGTACTCCCTCCGT 59.290 50.000 0.00 0.00 0.00 4.69
694 700 3.420300 TCATAGCTAGTACTCCCTCCG 57.580 52.381 0.00 0.00 0.00 4.63
695 701 6.069705 AGTATCATAGCTAGTACTCCCTCC 57.930 45.833 0.00 0.00 0.00 4.30
701 707 9.809395 TGTAATTGGAGTATCATAGCTAGTACT 57.191 33.333 13.17 13.17 36.25 2.73
704 710 8.368668 GGTTGTAATTGGAGTATCATAGCTAGT 58.631 37.037 0.00 0.00 36.25 2.57
705 711 8.367911 TGGTTGTAATTGGAGTATCATAGCTAG 58.632 37.037 0.00 0.00 36.25 3.42
706 712 8.257602 TGGTTGTAATTGGAGTATCATAGCTA 57.742 34.615 0.00 0.00 36.25 3.32
707 713 7.136822 TGGTTGTAATTGGAGTATCATAGCT 57.863 36.000 0.00 0.00 36.25 3.32
708 714 6.073003 GCTGGTTGTAATTGGAGTATCATAGC 60.073 42.308 0.00 0.00 36.25 2.97
709 715 6.428159 GGCTGGTTGTAATTGGAGTATCATAG 59.572 42.308 0.00 0.00 36.25 2.23
710 716 6.101150 AGGCTGGTTGTAATTGGAGTATCATA 59.899 38.462 0.00 0.00 36.25 2.15
711 717 5.103940 AGGCTGGTTGTAATTGGAGTATCAT 60.104 40.000 0.00 0.00 36.25 2.45
712 718 4.227300 AGGCTGGTTGTAATTGGAGTATCA 59.773 41.667 0.00 0.00 36.25 2.15
713 719 4.781934 AGGCTGGTTGTAATTGGAGTATC 58.218 43.478 0.00 0.00 0.00 2.24
714 720 4.862641 AGGCTGGTTGTAATTGGAGTAT 57.137 40.909 0.00 0.00 0.00 2.12
715 721 4.650972 AAGGCTGGTTGTAATTGGAGTA 57.349 40.909 0.00 0.00 0.00 2.59
716 722 3.525800 AAGGCTGGTTGTAATTGGAGT 57.474 42.857 0.00 0.00 0.00 3.85
717 723 4.157840 GGTTAAGGCTGGTTGTAATTGGAG 59.842 45.833 0.00 0.00 0.00 3.86
718 724 4.083565 GGTTAAGGCTGGTTGTAATTGGA 58.916 43.478 0.00 0.00 0.00 3.53
719 725 3.829601 TGGTTAAGGCTGGTTGTAATTGG 59.170 43.478 0.00 0.00 0.00 3.16
720 726 5.047377 ACATGGTTAAGGCTGGTTGTAATTG 60.047 40.000 0.00 0.00 0.00 2.32
721 727 5.047377 CACATGGTTAAGGCTGGTTGTAATT 60.047 40.000 0.00 0.00 0.00 1.40
722 728 4.462483 CACATGGTTAAGGCTGGTTGTAAT 59.538 41.667 0.00 0.00 0.00 1.89
723 729 3.823873 CACATGGTTAAGGCTGGTTGTAA 59.176 43.478 0.00 0.00 0.00 2.41
724 730 3.181438 ACACATGGTTAAGGCTGGTTGTA 60.181 43.478 0.00 0.00 0.00 2.41
725 731 2.238521 CACATGGTTAAGGCTGGTTGT 58.761 47.619 0.00 0.00 0.00 3.32
726 732 2.228822 GACACATGGTTAAGGCTGGTTG 59.771 50.000 0.00 0.00 0.00 3.77
727 733 2.158534 TGACACATGGTTAAGGCTGGTT 60.159 45.455 0.00 0.00 0.00 3.67
728 734 1.423541 TGACACATGGTTAAGGCTGGT 59.576 47.619 0.00 0.00 0.00 4.00
729 735 2.198827 TGACACATGGTTAAGGCTGG 57.801 50.000 0.00 0.00 0.00 4.85
730 736 5.895636 TTTATGACACATGGTTAAGGCTG 57.104 39.130 0.00 0.00 0.00 4.85
731 737 7.178274 TGAAATTTATGACACATGGTTAAGGCT 59.822 33.333 0.00 0.00 0.00 4.58
732 738 7.319646 TGAAATTTATGACACATGGTTAAGGC 58.680 34.615 0.00 0.00 0.00 4.35
733 739 9.139174 GTTGAAATTTATGACACATGGTTAAGG 57.861 33.333 0.00 0.00 0.00 2.69
734 740 9.689976 TGTTGAAATTTATGACACATGGTTAAG 57.310 29.630 0.00 0.00 0.00 1.85
845 873 1.561542 CAGCCCTCTTTGACCTGGTAT 59.438 52.381 0.00 0.00 0.00 2.73
952 987 1.298014 CCAGGGCTTGAGTGAGGAC 59.702 63.158 0.00 0.00 0.00 3.85
1284 1345 1.070786 GAGGACAAGGTTGCCGTCA 59.929 57.895 0.00 0.00 32.17 4.35
1368 1431 0.108186 CGCTGTCCTTGATGGTAGCA 60.108 55.000 0.00 0.00 42.68 3.49
1371 1434 1.754803 CTACCGCTGTCCTTGATGGTA 59.245 52.381 0.00 0.00 37.07 3.25
1656 1740 1.004560 CTCTGGCACGAGGCTGAAA 60.005 57.895 15.49 0.00 45.23 2.69
2214 2319 4.451900 CACTGTACTGTTCTTGGAGGTTT 58.548 43.478 2.16 0.00 0.00 3.27
2952 3066 3.010250 GGTAACCCCTTGTTCCTCTCATT 59.990 47.826 0.00 0.00 38.42 2.57
3073 3187 0.686224 CCCTCCTCTCCATGATCAGC 59.314 60.000 0.09 0.00 0.00 4.26
3260 3374 1.209504 GGATTTGGACGATCTGACCCA 59.790 52.381 0.00 0.00 0.00 4.51
3387 3501 1.344763 CTGTTCTCCGTCTGGGAAGTT 59.655 52.381 0.00 0.00 46.61 2.66
3400 3514 4.094887 TGTTTGAGAAGTTGTGCTGTTCTC 59.905 41.667 4.68 4.68 44.36 2.87
3402 3516 4.098416 GTGTTTGAGAAGTTGTGCTGTTC 58.902 43.478 0.00 0.00 0.00 3.18
3420 3537 2.838736 CCTGAAGTAGCACTGTGTGTT 58.161 47.619 9.86 0.00 35.75 3.32
3573 3690 7.389330 AGTGTTTATTGATACGGATGACACAAA 59.611 33.333 0.00 0.00 37.81 2.83
3575 3692 6.312672 CAGTGTTTATTGATACGGATGACACA 59.687 38.462 0.00 0.00 37.81 3.72
3576 3693 6.312918 ACAGTGTTTATTGATACGGATGACAC 59.687 38.462 0.00 0.00 36.14 3.67
3577 3694 6.403049 ACAGTGTTTATTGATACGGATGACA 58.597 36.000 0.00 0.00 0.00 3.58
3581 3698 5.989777 GCCTACAGTGTTTATTGATACGGAT 59.010 40.000 0.00 0.00 0.00 4.18
3583 3700 5.357257 AGCCTACAGTGTTTATTGATACGG 58.643 41.667 0.00 0.00 0.00 4.02
3584 3701 6.019801 GTGAGCCTACAGTGTTTATTGATACG 60.020 42.308 0.00 0.00 0.00 3.06
3664 3783 7.679025 AGGGAGTAGTAAAGTAGTTTCCATTCT 59.321 37.037 0.00 0.00 0.00 2.40
3685 3804 9.535878 GTGTCTTATATTTAGAAACAGAGGGAG 57.464 37.037 3.97 0.00 31.45 4.30
3687 3806 9.892130 AAGTGTCTTATATTTAGAAACAGAGGG 57.108 33.333 9.36 0.00 33.18 4.30
3692 3811 9.290988 TGCCAAAGTGTCTTATATTTAGAAACA 57.709 29.630 9.36 0.00 33.18 2.83
3693 3812 9.774742 CTGCCAAAGTGTCTTATATTTAGAAAC 57.225 33.333 0.00 0.00 31.26 2.78
3694 3813 9.515226 ACTGCCAAAGTGTCTTATATTTAGAAA 57.485 29.630 0.00 0.00 37.88 2.52
3695 3814 9.515226 AACTGCCAAAGTGTCTTATATTTAGAA 57.485 29.630 0.00 0.00 39.81 2.10
3696 3815 9.162764 GAACTGCCAAAGTGTCTTATATTTAGA 57.837 33.333 0.00 0.00 39.81 2.10
3697 3816 8.946085 TGAACTGCCAAAGTGTCTTATATTTAG 58.054 33.333 0.00 0.00 39.81 1.85
3698 3817 8.856153 TGAACTGCCAAAGTGTCTTATATTTA 57.144 30.769 0.00 0.00 39.81 1.40
3699 3818 7.759489 TGAACTGCCAAAGTGTCTTATATTT 57.241 32.000 0.00 0.00 39.81 1.40
3700 3819 7.759489 TTGAACTGCCAAAGTGTCTTATATT 57.241 32.000 0.00 0.00 39.81 1.28
3701 3820 7.831193 AGATTGAACTGCCAAAGTGTCTTATAT 59.169 33.333 0.00 0.00 39.81 0.86
3702 3821 7.168219 AGATTGAACTGCCAAAGTGTCTTATA 58.832 34.615 0.00 0.00 39.81 0.98
3703 3822 6.006449 AGATTGAACTGCCAAAGTGTCTTAT 58.994 36.000 0.00 0.00 39.81 1.73
3704 3823 5.376625 AGATTGAACTGCCAAAGTGTCTTA 58.623 37.500 0.00 0.00 39.81 2.10
3705 3824 4.210331 AGATTGAACTGCCAAAGTGTCTT 58.790 39.130 0.00 0.00 39.81 3.01
3706 3825 3.825328 AGATTGAACTGCCAAAGTGTCT 58.175 40.909 0.00 0.00 39.81 3.41
3707 3826 5.886960 ATAGATTGAACTGCCAAAGTGTC 57.113 39.130 0.00 0.00 39.81 3.67
3708 3827 6.372659 CAGTATAGATTGAACTGCCAAAGTGT 59.627 38.462 0.00 0.00 39.81 3.55
3709 3828 6.779117 CAGTATAGATTGAACTGCCAAAGTG 58.221 40.000 0.00 0.00 39.81 3.16
3710 3829 6.992063 CAGTATAGATTGAACTGCCAAAGT 57.008 37.500 0.00 0.00 42.60 2.66
3717 3836 6.178507 CGTTTTCGCAGTATAGATTGAACTG 58.821 40.000 0.00 0.00 42.80 3.16
3718 3837 6.332504 CGTTTTCGCAGTATAGATTGAACT 57.667 37.500 0.00 0.00 36.22 3.01
3737 3856 9.326413 CCCTCTGTTCATAAATATAAGACGTTT 57.674 33.333 0.00 0.00 0.00 3.60
3738 3857 8.701895 TCCCTCTGTTCATAAATATAAGACGTT 58.298 33.333 0.00 0.00 0.00 3.99
3739 3858 8.246430 TCCCTCTGTTCATAAATATAAGACGT 57.754 34.615 0.00 0.00 0.00 4.34
3740 3859 8.361139 ACTCCCTCTGTTCATAAATATAAGACG 58.639 37.037 0.00 0.00 0.00 4.18
3749 3868 9.042450 TGTCTAAATACTCCCTCTGTTCATAAA 57.958 33.333 0.00 0.00 0.00 1.40
3750 3869 8.603898 TGTCTAAATACTCCCTCTGTTCATAA 57.396 34.615 0.00 0.00 0.00 1.90
3751 3870 8.603898 TTGTCTAAATACTCCCTCTGTTCATA 57.396 34.615 0.00 0.00 0.00 2.15
3752 3871 7.496346 TTGTCTAAATACTCCCTCTGTTCAT 57.504 36.000 0.00 0.00 0.00 2.57
3753 3872 6.928348 TTGTCTAAATACTCCCTCTGTTCA 57.072 37.500 0.00 0.00 0.00 3.18
3754 3873 8.617290 TTTTTGTCTAAATACTCCCTCTGTTC 57.383 34.615 0.00 0.00 0.00 3.18
3825 3944 0.941542 CGCCTTTTTCCAAGACACGA 59.058 50.000 0.00 0.00 0.00 4.35
3865 3984 2.449464 TGTGCTTCTGCCAAATAGCAT 58.551 42.857 0.00 0.00 44.52 3.79
3886 4005 6.780031 TGGACTTTCCTTTGTGAAATTATGGA 59.220 34.615 0.00 0.00 37.46 3.41
3930 4049 7.375834 CCAGACAACAGTTGTACTATCTGTTA 58.624 38.462 19.17 0.00 46.27 2.41
3937 4056 4.897076 TCTTCCCAGACAACAGTTGTACTA 59.103 41.667 19.17 1.08 45.52 1.82
3938 4057 3.709653 TCTTCCCAGACAACAGTTGTACT 59.290 43.478 19.17 14.20 45.52 2.73
3939 4058 4.067972 TCTTCCCAGACAACAGTTGTAC 57.932 45.455 19.17 12.30 45.52 2.90
3987 4113 7.645340 GTCCATTGATTTCTTTCGTCCATATTG 59.355 37.037 0.00 0.00 0.00 1.90
3998 4124 4.298332 GCAACACGTCCATTGATTTCTTT 58.702 39.130 7.69 0.00 0.00 2.52
4038 4180 3.583086 CTCCTGGAGAGGGTTAGTTCAAA 59.417 47.826 19.13 0.00 40.25 2.69
4039 4181 3.173965 CTCCTGGAGAGGGTTAGTTCAA 58.826 50.000 19.13 0.00 40.25 2.69
4040 4182 2.821437 CTCCTGGAGAGGGTTAGTTCA 58.179 52.381 19.13 0.00 40.25 3.18
4050 4192 1.677637 GGGCGTTACCTCCTGGAGAG 61.678 65.000 25.18 16.48 42.83 3.20
4051 4193 1.684734 GGGCGTTACCTCCTGGAGA 60.685 63.158 25.18 2.84 39.10 3.71
4052 4194 1.265454 AAGGGCGTTACCTCCTGGAG 61.265 60.000 17.02 17.02 40.87 3.86
4053 4195 1.229400 AAGGGCGTTACCTCCTGGA 60.229 57.895 0.00 0.00 40.87 3.86
4099 4241 0.899720 CAATCCAGCCAAGCCATTGT 59.100 50.000 0.00 0.00 34.39 2.71
4102 4244 0.040058 TGTCAATCCAGCCAAGCCAT 59.960 50.000 0.00 0.00 0.00 4.40
4159 4301 6.879458 GGATTAGCCAGTTTACTTTCTTGAGA 59.121 38.462 0.00 0.00 36.34 3.27
4161 4303 6.779860 AGGATTAGCCAGTTTACTTTCTTGA 58.220 36.000 0.00 0.00 40.02 3.02
4314 4458 6.249035 TGACTAAAAATGGAACGGAATGAC 57.751 37.500 0.00 0.00 0.00 3.06
4383 4527 4.455533 ACTGATGAGCGTATCTTGCAAAAA 59.544 37.500 0.00 0.00 33.85 1.94
4387 4531 2.967599 ACTGATGAGCGTATCTTGCA 57.032 45.000 5.13 0.00 33.85 4.08
4398 4542 9.926158 AGTAATATATGAGCAGAAACTGATGAG 57.074 33.333 2.81 0.00 32.44 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.