Multiple sequence alignment - TraesCS2B01G235600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G235600 chr2B 100.000 3136 0 0 1 3136 235905024 235908159 0.000000e+00 5792.0
1 TraesCS2B01G235600 chr2B 90.315 1332 66 30 1849 3136 235063248 235064560 0.000000e+00 1687.0
2 TraesCS2B01G235600 chr2B 90.482 767 28 14 886 1613 235062491 235063251 0.000000e+00 970.0
3 TraesCS2B01G235600 chr2B 93.175 630 40 3 1 628 686806842 686807470 0.000000e+00 922.0
4 TraesCS2B01G235600 chr2B 88.525 427 43 3 1120 1540 383355488 383355914 2.160000e-141 512.0
5 TraesCS2B01G235600 chr2B 75.843 178 35 7 2619 2794 202012878 202013049 2.000000e-12 84.2
6 TraesCS2B01G235600 chr2D 91.530 732 56 5 2231 2961 178920843 178921569 0.000000e+00 1003.0
7 TraesCS2B01G235600 chr2D 89.508 772 27 16 887 1613 178528898 178529660 0.000000e+00 928.0
8 TraesCS2B01G235600 chr2D 88.918 758 48 16 887 1613 178696631 178697383 0.000000e+00 902.0
9 TraesCS2B01G235600 chr2D 92.540 630 43 4 1 628 558788499 558787872 0.000000e+00 900.0
10 TraesCS2B01G235600 chr2D 81.926 758 97 21 2202 2956 178698016 178698736 3.460000e-169 604.0
11 TraesCS2B01G235600 chr2D 80.607 758 97 26 2202 2956 178534834 178535544 9.890000e-150 540.0
12 TraesCS2B01G235600 chr2D 87.250 400 42 6 1162 1556 315425059 315425454 6.170000e-122 448.0
13 TraesCS2B01G235600 chr2D 95.111 225 7 1 1936 2160 178534541 178534761 4.980000e-93 351.0
14 TraesCS2B01G235600 chr2D 95.082 183 9 0 2954 3136 581016268 581016086 3.960000e-74 289.0
15 TraesCS2B01G235600 chr2D 91.827 208 8 2 1953 2160 178697745 178697943 6.620000e-72 281.0
16 TraesCS2B01G235600 chr2D 82.875 327 23 9 1849 2160 178697380 178697688 2.400000e-66 263.0
17 TraesCS2B01G235600 chr2D 89.552 201 13 3 687 887 620907359 620907551 6.720000e-62 248.0
18 TraesCS2B01G235600 chr2A 83.491 1163 98 40 1849 2965 193585543 193586657 0.000000e+00 998.0
19 TraesCS2B01G235600 chr2A 90.426 752 39 15 886 1613 193584804 193585546 0.000000e+00 959.0
20 TraesCS2B01G235600 chr2A 97.959 245 5 0 1609 1853 84977526 84977770 2.890000e-115 425.0
21 TraesCS2B01G235600 chr2A 77.841 352 65 10 2456 2805 514191723 514192063 4.100000e-49 206.0
22 TraesCS2B01G235600 chr2A 79.775 178 32 3 2628 2804 59697468 59697294 3.280000e-25 126.0
23 TraesCS2B01G235600 chr2A 96.078 51 2 0 2906 2956 193586836 193586886 2.000000e-12 84.2
24 TraesCS2B01G235600 chr6A 93.016 630 42 2 1 628 419773454 419774083 0.000000e+00 918.0
25 TraesCS2B01G235600 chr6A 76.471 374 79 8 2437 2805 457083459 457083828 8.870000e-46 195.0
26 TraesCS2B01G235600 chr1D 93.016 630 42 2 1 628 233887048 233886419 0.000000e+00 918.0
27 TraesCS2B01G235600 chr1D 92.350 183 14 0 2954 3136 130284164 130283982 8.630000e-66 261.0
28 TraesCS2B01G235600 chr4B 92.698 630 44 2 1 628 68661024 68661653 0.000000e+00 907.0
29 TraesCS2B01G235600 chr6B 92.698 630 42 4 1 628 694669537 694670164 0.000000e+00 905.0
30 TraesCS2B01G235600 chr6B 81.183 558 51 18 1014 1531 79797997 79797454 1.750000e-107 399.0
31 TraesCS2B01G235600 chr6B 73.020 404 90 13 2371 2761 493356101 493355704 1.180000e-24 124.0
32 TraesCS2B01G235600 chr6B 80.357 168 24 6 1988 2155 79796451 79796293 5.490000e-23 119.0
33 TraesCS2B01G235600 chr6B 80.892 157 15 6 1859 2000 79797075 79796919 3.310000e-20 110.0
34 TraesCS2B01G235600 chr6B 84.375 96 11 3 2698 2793 514833855 514833946 1.200000e-14 91.6
35 TraesCS2B01G235600 chr3D 92.698 630 42 3 1 628 20703282 20702655 0.000000e+00 905.0
36 TraesCS2B01G235600 chr3D 86.842 190 10 5 698 887 307061972 307062146 6.860000e-47 198.0
37 TraesCS2B01G235600 chr5B 92.698 630 40 4 1 628 6914475 6913850 0.000000e+00 904.0
38 TraesCS2B01G235600 chr7D 92.552 631 44 3 1 629 90994747 90994118 0.000000e+00 902.0
39 TraesCS2B01G235600 chr7D 94.475 181 10 0 2956 3136 593979486 593979306 2.380000e-71 279.0
40 TraesCS2B01G235600 chr7D 91.935 186 15 0 2951 3136 509235905 509235720 8.630000e-66 261.0
41 TraesCS2B01G235600 chr7D 88.670 203 14 3 685 887 615557340 615557533 4.040000e-59 239.0
42 TraesCS2B01G235600 chr7D 89.655 58 6 0 685 742 615557865 615557808 1.210000e-09 75.0
43 TraesCS2B01G235600 chrUn 85.116 430 40 7 1120 1531 27634952 27635375 4.840000e-113 418.0
44 TraesCS2B01G235600 chrUn 90.148 203 12 2 685 887 331424769 331424575 1.120000e-64 257.0
45 TraesCS2B01G235600 chrUn 92.920 113 7 1 685 797 68579659 68579548 2.500000e-36 163.0
46 TraesCS2B01G235600 chrUn 88.158 76 8 1 1988 2063 27636165 27636239 4.310000e-14 89.8
47 TraesCS2B01G235600 chrUn 92.063 63 4 1 1928 1990 27635940 27636001 1.550000e-13 87.9
48 TraesCS2B01G235600 chr7A 97.521 242 6 0 1612 1853 699150515 699150274 6.260000e-112 414.0
49 TraesCS2B01G235600 chr7A 96.386 249 8 1 1605 1853 580592450 580592697 2.910000e-110 409.0
50 TraesCS2B01G235600 chr7A 92.896 183 13 0 2954 3136 547571421 547571603 1.850000e-67 267.0
51 TraesCS2B01G235600 chr5A 96.063 254 8 2 1600 1853 677940643 677940392 2.250000e-111 412.0
52 TraesCS2B01G235600 chr3B 96.787 249 5 3 1608 1855 12175018 12174772 2.250000e-111 412.0
53 TraesCS2B01G235600 chr3B 97.510 241 6 0 1612 1852 742449919 742450159 2.250000e-111 412.0
54 TraesCS2B01G235600 chr3B 96.735 245 8 0 1611 1855 497096575 497096331 2.910000e-110 409.0
55 TraesCS2B01G235600 chr3A 97.119 243 7 0 1612 1854 246041517 246041759 8.090000e-111 411.0
56 TraesCS2B01G235600 chr3A 91.304 184 15 1 2953 3136 599999946 599999764 1.870000e-62 250.0
57 TraesCS2B01G235600 chr1B 96.735 245 8 0 1612 1856 152079865 152079621 2.910000e-110 409.0
58 TraesCS2B01G235600 chr1B 87.879 132 14 2 685 815 631811652 631811522 1.510000e-33 154.0
59 TraesCS2B01G235600 chr6D 93.370 181 12 0 2956 3136 354351019 354351199 5.160000e-68 268.0
60 TraesCS2B01G235600 chr7B 92.391 184 14 0 2953 3136 607423789 607423972 2.400000e-66 263.0
61 TraesCS2B01G235600 chr7B 77.491 271 50 10 2516 2783 703243964 703244226 5.420000e-33 152.0
62 TraesCS2B01G235600 chr1A 89.655 203 13 4 685 887 577274312 577274118 5.190000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G235600 chr2B 235905024 235908159 3135 False 5792.000000 5792 100.000000 1 3136 1 chr2B.!!$F2 3135
1 TraesCS2B01G235600 chr2B 235062491 235064560 2069 False 1328.500000 1687 90.398500 886 3136 2 chr2B.!!$F5 2250
2 TraesCS2B01G235600 chr2B 686806842 686807470 628 False 922.000000 922 93.175000 1 628 1 chr2B.!!$F4 627
3 TraesCS2B01G235600 chr2D 178920843 178921569 726 False 1003.000000 1003 91.530000 2231 2961 1 chr2D.!!$F2 730
4 TraesCS2B01G235600 chr2D 178528898 178529660 762 False 928.000000 928 89.508000 887 1613 1 chr2D.!!$F1 726
5 TraesCS2B01G235600 chr2D 558787872 558788499 627 True 900.000000 900 92.540000 1 628 1 chr2D.!!$R1 627
6 TraesCS2B01G235600 chr2D 178696631 178698736 2105 False 512.500000 902 86.386500 887 2956 4 chr2D.!!$F6 2069
7 TraesCS2B01G235600 chr2D 178534541 178535544 1003 False 445.500000 540 87.859000 1936 2956 2 chr2D.!!$F5 1020
8 TraesCS2B01G235600 chr2A 193584804 193586886 2082 False 680.400000 998 89.998333 886 2965 3 chr2A.!!$F3 2079
9 TraesCS2B01G235600 chr6A 419773454 419774083 629 False 918.000000 918 93.016000 1 628 1 chr6A.!!$F1 627
10 TraesCS2B01G235600 chr1D 233886419 233887048 629 True 918.000000 918 93.016000 1 628 1 chr1D.!!$R2 627
11 TraesCS2B01G235600 chr4B 68661024 68661653 629 False 907.000000 907 92.698000 1 628 1 chr4B.!!$F1 627
12 TraesCS2B01G235600 chr6B 694669537 694670164 627 False 905.000000 905 92.698000 1 628 1 chr6B.!!$F2 627
13 TraesCS2B01G235600 chr6B 79796293 79797997 1704 True 209.333333 399 80.810667 1014 2155 3 chr6B.!!$R2 1141
14 TraesCS2B01G235600 chr3D 20702655 20703282 627 True 905.000000 905 92.698000 1 628 1 chr3D.!!$R1 627
15 TraesCS2B01G235600 chr5B 6913850 6914475 625 True 904.000000 904 92.698000 1 628 1 chr5B.!!$R1 627
16 TraesCS2B01G235600 chr7D 90994118 90994747 629 True 902.000000 902 92.552000 1 629 1 chr7D.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 719 0.036858 GAAGACCCACCTCTCTGTGC 60.037 60.0 0.00 0.0 34.85 4.57 F
1654 2046 0.175760 TGCTTCCTCTATCCACGTGC 59.824 55.0 10.91 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 2211 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.0 4.18 5.6 42.35 6.13 R
2872 3955 1.138568 CAGGAATCTGCTCCATCCCT 58.861 55.0 0.00 0.0 38.02 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 1.687493 GTGCTGAGGCCCTAGTCCT 60.687 63.158 0.00 0.78 37.74 3.85
105 107 3.100503 GCCCTAGTCCTGGCTCTGC 62.101 68.421 0.84 0.00 44.46 4.26
115 120 2.046892 GGCTCTGCTTCTTCGCCA 60.047 61.111 0.00 0.00 40.41 5.69
205 210 2.506957 GGTTGGTTTGGTGGCTGGG 61.507 63.158 0.00 0.00 0.00 4.45
208 213 1.943730 TTGGTTTGGTGGCTGGGTCT 61.944 55.000 0.00 0.00 0.00 3.85
582 590 1.557099 CCAGCGCCTATCCCTGTATA 58.443 55.000 2.29 0.00 0.00 1.47
583 591 1.204941 CCAGCGCCTATCCCTGTATAC 59.795 57.143 2.29 0.00 0.00 1.47
588 596 2.415625 CGCCTATCCCTGTATACTTCGC 60.416 54.545 4.17 0.00 0.00 4.70
610 618 5.633182 CGCTTGGTTGCTTTGTATACAAAAT 59.367 36.000 26.60 0.00 44.24 1.82
613 621 6.412362 TGGTTGCTTTGTATACAAAATGGT 57.588 33.333 26.60 0.00 44.24 3.55
654 662 9.939802 TTAAAAGAAAGTTGTAGATAGAGTCCC 57.060 33.333 0.00 0.00 0.00 4.46
655 663 7.800300 AAAGAAAGTTGTAGATAGAGTCCCT 57.200 36.000 0.00 0.00 0.00 4.20
656 664 8.896722 AAAGAAAGTTGTAGATAGAGTCCCTA 57.103 34.615 0.00 0.00 0.00 3.53
657 665 7.885009 AGAAAGTTGTAGATAGAGTCCCTAC 57.115 40.000 7.59 7.59 34.81 3.18
658 666 6.543100 AGAAAGTTGTAGATAGAGTCCCTACG 59.457 42.308 9.16 0.00 36.47 3.51
659 667 5.627182 AGTTGTAGATAGAGTCCCTACGA 57.373 43.478 0.00 5.94 36.47 3.43
660 668 5.999044 AGTTGTAGATAGAGTCCCTACGAA 58.001 41.667 0.00 3.15 36.47 3.85
661 669 5.821995 AGTTGTAGATAGAGTCCCTACGAAC 59.178 44.000 0.00 10.98 36.47 3.95
662 670 5.363562 TGTAGATAGAGTCCCTACGAACA 57.636 43.478 0.00 0.00 36.47 3.18
663 671 5.366460 TGTAGATAGAGTCCCTACGAACAG 58.634 45.833 0.00 0.00 36.47 3.16
664 672 4.774660 AGATAGAGTCCCTACGAACAGA 57.225 45.455 0.00 0.00 0.00 3.41
665 673 5.113446 AGATAGAGTCCCTACGAACAGAA 57.887 43.478 0.00 0.00 0.00 3.02
666 674 5.507637 AGATAGAGTCCCTACGAACAGAAA 58.492 41.667 0.00 0.00 0.00 2.52
667 675 5.591067 AGATAGAGTCCCTACGAACAGAAAG 59.409 44.000 0.00 0.00 0.00 2.62
668 676 3.764218 AGAGTCCCTACGAACAGAAAGA 58.236 45.455 0.00 0.00 0.00 2.52
669 677 4.345854 AGAGTCCCTACGAACAGAAAGAT 58.654 43.478 0.00 0.00 0.00 2.40
670 678 4.399934 AGAGTCCCTACGAACAGAAAGATC 59.600 45.833 0.00 0.00 0.00 2.75
671 679 3.128938 AGTCCCTACGAACAGAAAGATCG 59.871 47.826 0.00 0.00 46.57 3.69
677 685 2.263077 CGAACAGAAAGATCGTGGAGG 58.737 52.381 0.00 0.00 37.70 4.30
678 686 2.094700 CGAACAGAAAGATCGTGGAGGA 60.095 50.000 0.00 0.00 37.70 3.71
679 687 3.614150 CGAACAGAAAGATCGTGGAGGAA 60.614 47.826 0.00 0.00 37.70 3.36
680 688 4.315803 GAACAGAAAGATCGTGGAGGAAA 58.684 43.478 0.00 0.00 0.00 3.13
681 689 3.931578 ACAGAAAGATCGTGGAGGAAAG 58.068 45.455 0.00 0.00 0.00 2.62
682 690 3.578716 ACAGAAAGATCGTGGAGGAAAGA 59.421 43.478 0.00 0.00 0.00 2.52
683 691 4.040461 ACAGAAAGATCGTGGAGGAAAGAA 59.960 41.667 0.00 0.00 0.00 2.52
684 692 4.390297 CAGAAAGATCGTGGAGGAAAGAAC 59.610 45.833 0.00 0.00 0.00 3.01
685 693 4.040461 AGAAAGATCGTGGAGGAAAGAACA 59.960 41.667 0.00 0.00 0.00 3.18
686 694 3.320673 AGATCGTGGAGGAAAGAACAC 57.679 47.619 0.00 0.00 0.00 3.32
687 695 2.632996 AGATCGTGGAGGAAAGAACACA 59.367 45.455 0.00 0.00 33.62 3.72
688 696 2.526304 TCGTGGAGGAAAGAACACAG 57.474 50.000 0.00 0.00 33.62 3.66
689 697 2.036387 TCGTGGAGGAAAGAACACAGA 58.964 47.619 0.00 0.00 33.62 3.41
690 698 2.135933 CGTGGAGGAAAGAACACAGAC 58.864 52.381 0.00 0.00 33.62 3.51
691 699 2.135933 GTGGAGGAAAGAACACAGACG 58.864 52.381 0.00 0.00 34.16 4.18
692 700 1.070134 TGGAGGAAAGAACACAGACGG 59.930 52.381 0.00 0.00 0.00 4.79
693 701 1.343465 GGAGGAAAGAACACAGACGGA 59.657 52.381 0.00 0.00 0.00 4.69
694 702 2.224209 GGAGGAAAGAACACAGACGGAA 60.224 50.000 0.00 0.00 0.00 4.30
695 703 3.060602 GAGGAAAGAACACAGACGGAAG 58.939 50.000 0.00 0.00 0.00 3.46
696 704 2.698797 AGGAAAGAACACAGACGGAAGA 59.301 45.455 0.00 0.00 0.00 2.87
697 705 2.801111 GGAAAGAACACAGACGGAAGAC 59.199 50.000 0.00 0.00 0.00 3.01
698 706 2.528041 AAGAACACAGACGGAAGACC 57.472 50.000 0.00 0.00 0.00 3.85
699 707 0.680061 AGAACACAGACGGAAGACCC 59.320 55.000 0.00 0.00 0.00 4.46
700 708 0.391597 GAACACAGACGGAAGACCCA 59.608 55.000 0.00 0.00 34.14 4.51
701 709 0.106149 AACACAGACGGAAGACCCAC 59.894 55.000 0.00 0.00 34.14 4.61
702 710 1.004918 CACAGACGGAAGACCCACC 60.005 63.158 0.00 0.00 34.14 4.61
703 711 1.152312 ACAGACGGAAGACCCACCT 60.152 57.895 0.00 0.00 34.14 4.00
704 712 1.186267 ACAGACGGAAGACCCACCTC 61.186 60.000 0.00 0.00 34.14 3.85
705 713 0.900647 CAGACGGAAGACCCACCTCT 60.901 60.000 0.00 0.00 34.14 3.69
706 714 0.612453 AGACGGAAGACCCACCTCTC 60.612 60.000 0.00 0.00 34.14 3.20
707 715 0.612453 GACGGAAGACCCACCTCTCT 60.612 60.000 0.00 0.00 34.14 3.10
708 716 0.900647 ACGGAAGACCCACCTCTCTG 60.901 60.000 0.00 0.00 34.14 3.35
709 717 0.900647 CGGAAGACCCACCTCTCTGT 60.901 60.000 0.00 0.00 34.14 3.41
710 718 0.610687 GGAAGACCCACCTCTCTGTG 59.389 60.000 0.00 0.00 35.98 3.66
711 719 0.036858 GAAGACCCACCTCTCTGTGC 60.037 60.000 0.00 0.00 34.85 4.57
712 720 1.821061 AAGACCCACCTCTCTGTGCG 61.821 60.000 0.00 0.00 34.85 5.34
713 721 2.203640 ACCCACCTCTCTGTGCGA 60.204 61.111 0.00 0.00 34.85 5.10
714 722 2.262915 CCCACCTCTCTGTGCGAC 59.737 66.667 0.00 0.00 34.85 5.19
715 723 2.574018 CCCACCTCTCTGTGCGACA 61.574 63.158 0.00 0.00 34.85 4.35
716 724 1.373497 CCACCTCTCTGTGCGACAC 60.373 63.158 3.44 3.44 34.85 3.67
717 725 1.730902 CACCTCTCTGTGCGACACG 60.731 63.158 5.69 0.00 37.14 4.49
718 726 2.194212 ACCTCTCTGTGCGACACGT 61.194 57.895 5.69 0.00 37.14 4.49
719 727 1.730902 CCTCTCTGTGCGACACGTG 60.731 63.158 15.48 15.48 37.14 4.49
720 728 1.730902 CTCTCTGTGCGACACGTGG 60.731 63.158 21.57 3.72 37.14 4.94
721 729 3.406361 CTCTGTGCGACACGTGGC 61.406 66.667 21.57 17.52 37.14 5.01
722 730 4.214327 TCTGTGCGACACGTGGCA 62.214 61.111 23.63 18.55 41.94 4.92
723 731 3.268603 CTGTGCGACACGTGGCAA 61.269 61.111 23.63 5.84 45.49 4.52
724 732 2.818487 CTGTGCGACACGTGGCAAA 61.818 57.895 23.63 15.35 45.49 3.68
725 733 2.351888 GTGCGACACGTGGCAAAC 60.352 61.111 23.63 14.99 45.49 2.93
726 734 2.512745 TGCGACACGTGGCAAACT 60.513 55.556 23.63 0.00 41.26 2.66
727 735 2.052237 GCGACACGTGGCAAACTG 60.052 61.111 23.63 5.43 34.31 3.16
728 736 2.530497 GCGACACGTGGCAAACTGA 61.530 57.895 23.63 0.00 34.31 3.41
729 737 2.010670 CGACACGTGGCAAACTGAA 58.989 52.632 23.63 0.00 0.00 3.02
730 738 0.586319 CGACACGTGGCAAACTGAAT 59.414 50.000 23.63 0.00 0.00 2.57
731 739 1.398451 CGACACGTGGCAAACTGAATC 60.398 52.381 23.63 3.76 0.00 2.52
732 740 1.873591 GACACGTGGCAAACTGAATCT 59.126 47.619 18.77 0.00 0.00 2.40
733 741 1.873591 ACACGTGGCAAACTGAATCTC 59.126 47.619 21.57 0.00 0.00 2.75
734 742 1.872952 CACGTGGCAAACTGAATCTCA 59.127 47.619 7.95 0.00 0.00 3.27
735 743 2.290367 CACGTGGCAAACTGAATCTCAA 59.710 45.455 7.95 0.00 0.00 3.02
736 744 2.948979 ACGTGGCAAACTGAATCTCAAA 59.051 40.909 0.00 0.00 0.00 2.69
737 745 3.003689 ACGTGGCAAACTGAATCTCAAAG 59.996 43.478 0.00 0.00 0.00 2.77
738 746 3.311966 GTGGCAAACTGAATCTCAAAGC 58.688 45.455 0.00 0.00 0.00 3.51
739 747 2.957680 TGGCAAACTGAATCTCAAAGCA 59.042 40.909 0.00 0.00 0.00 3.91
740 748 3.005050 TGGCAAACTGAATCTCAAAGCAG 59.995 43.478 0.00 0.00 34.65 4.24
741 749 2.985139 GCAAACTGAATCTCAAAGCAGC 59.015 45.455 0.00 0.00 31.74 5.25
742 750 3.572584 CAAACTGAATCTCAAAGCAGCC 58.427 45.455 0.00 0.00 31.74 4.85
743 751 2.574006 ACTGAATCTCAAAGCAGCCA 57.426 45.000 0.00 0.00 31.74 4.75
744 752 3.083122 ACTGAATCTCAAAGCAGCCAT 57.917 42.857 0.00 0.00 31.74 4.40
745 753 3.428532 ACTGAATCTCAAAGCAGCCATT 58.571 40.909 0.00 0.00 31.74 3.16
746 754 4.592942 ACTGAATCTCAAAGCAGCCATTA 58.407 39.130 0.00 0.00 31.74 1.90
747 755 5.012239 ACTGAATCTCAAAGCAGCCATTAA 58.988 37.500 0.00 0.00 31.74 1.40
748 756 5.655532 ACTGAATCTCAAAGCAGCCATTAAT 59.344 36.000 0.00 0.00 31.74 1.40
749 757 6.140303 TGAATCTCAAAGCAGCCATTAATC 57.860 37.500 0.00 0.00 0.00 1.75
750 758 5.068198 TGAATCTCAAAGCAGCCATTAATCC 59.932 40.000 0.00 0.00 0.00 3.01
751 759 3.290710 TCTCAAAGCAGCCATTAATCCC 58.709 45.455 0.00 0.00 0.00 3.85
752 760 2.363359 CTCAAAGCAGCCATTAATCCCC 59.637 50.000 0.00 0.00 0.00 4.81
753 761 2.024080 TCAAAGCAGCCATTAATCCCCT 60.024 45.455 0.00 0.00 0.00 4.79
754 762 2.767960 CAAAGCAGCCATTAATCCCCTT 59.232 45.455 0.00 0.00 0.00 3.95
755 763 2.371658 AGCAGCCATTAATCCCCTTC 57.628 50.000 0.00 0.00 0.00 3.46
756 764 0.954452 GCAGCCATTAATCCCCTTCG 59.046 55.000 0.00 0.00 0.00 3.79
757 765 0.954452 CAGCCATTAATCCCCTTCGC 59.046 55.000 0.00 0.00 0.00 4.70
758 766 0.178990 AGCCATTAATCCCCTTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
759 767 0.467290 GCCATTAATCCCCTTCGCCA 60.467 55.000 0.00 0.00 0.00 5.69
760 768 2.026905 GCCATTAATCCCCTTCGCCAA 61.027 52.381 0.00 0.00 0.00 4.52
761 769 2.383855 CCATTAATCCCCTTCGCCAAA 58.616 47.619 0.00 0.00 0.00 3.28
762 770 2.965147 CCATTAATCCCCTTCGCCAAAT 59.035 45.455 0.00 0.00 0.00 2.32
763 771 3.005791 CCATTAATCCCCTTCGCCAAATC 59.994 47.826 0.00 0.00 0.00 2.17
764 772 2.358322 TAATCCCCTTCGCCAAATCC 57.642 50.000 0.00 0.00 0.00 3.01
765 773 0.397114 AATCCCCTTCGCCAAATCCC 60.397 55.000 0.00 0.00 0.00 3.85
766 774 1.580066 ATCCCCTTCGCCAAATCCCA 61.580 55.000 0.00 0.00 0.00 4.37
767 775 1.304879 CCCCTTCGCCAAATCCCAA 60.305 57.895 0.00 0.00 0.00 4.12
768 776 0.687427 CCCCTTCGCCAAATCCCAAT 60.687 55.000 0.00 0.00 0.00 3.16
769 777 1.194218 CCCTTCGCCAAATCCCAATT 58.806 50.000 0.00 0.00 0.00 2.32
770 778 1.554617 CCCTTCGCCAAATCCCAATTT 59.445 47.619 0.00 0.00 35.43 1.82
771 779 2.418609 CCCTTCGCCAAATCCCAATTTC 60.419 50.000 0.00 0.00 32.69 2.17
772 780 2.497273 CCTTCGCCAAATCCCAATTTCT 59.503 45.455 0.00 0.00 32.69 2.52
773 781 3.699038 CCTTCGCCAAATCCCAATTTCTA 59.301 43.478 0.00 0.00 32.69 2.10
774 782 4.342092 CCTTCGCCAAATCCCAATTTCTAT 59.658 41.667 0.00 0.00 32.69 1.98
775 783 5.163416 CCTTCGCCAAATCCCAATTTCTATT 60.163 40.000 0.00 0.00 32.69 1.73
776 784 6.040391 CCTTCGCCAAATCCCAATTTCTATTA 59.960 38.462 0.00 0.00 32.69 0.98
777 785 6.633500 TCGCCAAATCCCAATTTCTATTAG 57.367 37.500 0.00 0.00 32.69 1.73
778 786 5.009610 TCGCCAAATCCCAATTTCTATTAGC 59.990 40.000 0.00 0.00 32.69 3.09
779 787 5.541845 GCCAAATCCCAATTTCTATTAGCC 58.458 41.667 0.00 0.00 32.69 3.93
780 788 5.511373 GCCAAATCCCAATTTCTATTAGCCC 60.511 44.000 0.00 0.00 32.69 5.19
781 789 5.278957 CCAAATCCCAATTTCTATTAGCCCG 60.279 44.000 0.00 0.00 32.69 6.13
782 790 3.502123 TCCCAATTTCTATTAGCCCGG 57.498 47.619 0.00 0.00 0.00 5.73
783 791 2.107552 TCCCAATTTCTATTAGCCCGGG 59.892 50.000 19.09 19.09 0.00 5.73
784 792 2.158519 CCCAATTTCTATTAGCCCGGGT 60.159 50.000 24.63 11.76 0.00 5.28
785 793 3.562182 CCAATTTCTATTAGCCCGGGTT 58.438 45.455 24.63 20.60 0.00 4.11
786 794 3.568430 CCAATTTCTATTAGCCCGGGTTC 59.432 47.826 24.63 6.10 0.00 3.62
787 795 4.204012 CAATTTCTATTAGCCCGGGTTCA 58.796 43.478 24.63 8.35 0.00 3.18
788 796 4.513406 ATTTCTATTAGCCCGGGTTCAA 57.487 40.909 24.63 14.08 0.00 2.69
789 797 4.513406 TTTCTATTAGCCCGGGTTCAAT 57.487 40.909 24.63 19.91 0.00 2.57
790 798 3.485463 TCTATTAGCCCGGGTTCAATG 57.515 47.619 24.63 9.28 0.00 2.82
791 799 2.775384 TCTATTAGCCCGGGTTCAATGT 59.225 45.455 24.63 4.72 0.00 2.71
792 800 2.525105 ATTAGCCCGGGTTCAATGTT 57.475 45.000 24.63 0.35 0.00 2.71
793 801 1.828979 TTAGCCCGGGTTCAATGTTC 58.171 50.000 24.63 0.79 0.00 3.18
794 802 0.693622 TAGCCCGGGTTCAATGTTCA 59.306 50.000 24.63 0.00 0.00 3.18
795 803 0.178975 AGCCCGGGTTCAATGTTCAA 60.179 50.000 24.63 0.00 0.00 2.69
796 804 0.676736 GCCCGGGTTCAATGTTCAAA 59.323 50.000 24.63 0.00 0.00 2.69
797 805 1.336795 GCCCGGGTTCAATGTTCAAAG 60.337 52.381 24.63 0.00 0.00 2.77
798 806 1.960689 CCCGGGTTCAATGTTCAAAGT 59.039 47.619 14.18 0.00 0.00 2.66
799 807 2.364002 CCCGGGTTCAATGTTCAAAGTT 59.636 45.455 14.18 0.00 0.00 2.66
800 808 3.552068 CCCGGGTTCAATGTTCAAAGTTC 60.552 47.826 14.18 0.00 0.00 3.01
801 809 3.067461 CCGGGTTCAATGTTCAAAGTTCA 59.933 43.478 0.00 0.00 0.00 3.18
802 810 4.440802 CCGGGTTCAATGTTCAAAGTTCAA 60.441 41.667 0.00 0.00 0.00 2.69
803 811 5.105752 CGGGTTCAATGTTCAAAGTTCAAA 58.894 37.500 0.00 0.00 0.00 2.69
804 812 5.005299 CGGGTTCAATGTTCAAAGTTCAAAC 59.995 40.000 0.00 0.00 0.00 2.93
805 813 6.106003 GGGTTCAATGTTCAAAGTTCAAACT 58.894 36.000 0.00 0.00 42.04 2.66
806 814 6.255670 GGGTTCAATGTTCAAAGTTCAAACTC 59.744 38.462 0.00 0.00 38.57 3.01
807 815 6.255670 GGTTCAATGTTCAAAGTTCAAACTCC 59.744 38.462 0.00 0.00 38.57 3.85
808 816 6.522625 TCAATGTTCAAAGTTCAAACTCCA 57.477 33.333 0.00 0.00 38.57 3.86
809 817 6.563422 TCAATGTTCAAAGTTCAAACTCCAG 58.437 36.000 0.00 0.00 38.57 3.86
810 818 4.370364 TGTTCAAAGTTCAAACTCCAGC 57.630 40.909 0.00 0.00 38.57 4.85
811 819 3.130340 TGTTCAAAGTTCAAACTCCAGCC 59.870 43.478 0.00 0.00 38.57 4.85
812 820 1.946768 TCAAAGTTCAAACTCCAGCCG 59.053 47.619 0.00 0.00 38.57 5.52
813 821 0.668535 AAAGTTCAAACTCCAGCCGC 59.331 50.000 0.00 0.00 38.57 6.53
814 822 1.172812 AAGTTCAAACTCCAGCCGCC 61.173 55.000 0.00 0.00 38.57 6.13
815 823 2.668212 TTCAAACTCCAGCCGCCG 60.668 61.111 0.00 0.00 0.00 6.46
816 824 4.697756 TCAAACTCCAGCCGCCGG 62.698 66.667 0.00 0.00 0.00 6.13
851 859 4.465512 GCCGCATCGTTGCCTGTG 62.466 66.667 12.66 0.00 46.57 3.66
852 860 4.465512 CCGCATCGTTGCCTGTGC 62.466 66.667 12.66 0.00 46.57 4.57
855 863 3.425713 CATCGTTGCCTGTGCGCT 61.426 61.111 9.73 0.00 41.78 5.92
856 864 3.121030 ATCGTTGCCTGTGCGCTC 61.121 61.111 9.73 5.51 41.78 5.03
859 867 4.077188 GTTGCCTGTGCGCTCGTC 62.077 66.667 9.73 0.00 41.78 4.20
863 871 3.175240 CCTGTGCGCTCGTCGAAG 61.175 66.667 9.73 0.00 41.67 3.79
864 872 2.126850 CTGTGCGCTCGTCGAAGA 60.127 61.111 9.73 0.03 41.67 2.87
876 884 3.588277 TCGAAGACAGGTGCAACTC 57.412 52.632 0.00 0.00 36.74 3.01
877 885 1.040646 TCGAAGACAGGTGCAACTCT 58.959 50.000 0.00 0.00 36.74 3.24
878 886 1.000163 TCGAAGACAGGTGCAACTCTC 60.000 52.381 0.00 0.00 36.74 3.20
879 887 1.802069 GAAGACAGGTGCAACTCTCC 58.198 55.000 0.00 0.00 36.74 3.71
880 888 1.070758 GAAGACAGGTGCAACTCTCCA 59.929 52.381 0.00 0.00 36.74 3.86
881 889 0.683973 AGACAGGTGCAACTCTCCAG 59.316 55.000 0.00 0.00 36.74 3.86
882 890 0.952984 GACAGGTGCAACTCTCCAGC 60.953 60.000 0.00 0.00 36.74 4.85
883 891 1.071987 CAGGTGCAACTCTCCAGCA 59.928 57.895 0.00 0.00 36.74 4.41
959 967 8.156994 AGAACGAGAATGAGAAGGTAGTATAC 57.843 38.462 0.00 0.00 42.04 1.47
960 968 7.994334 AGAACGAGAATGAGAAGGTAGTATACT 59.006 37.037 10.87 10.87 42.51 2.12
961 969 9.270640 GAACGAGAATGAGAAGGTAGTATACTA 57.729 37.037 8.59 8.59 42.51 1.82
1114 1179 1.719725 GACCTGCTCGATCTCTCGCA 61.720 60.000 0.00 0.00 44.65 5.10
1543 1921 2.480416 CGAGGATTTGAGCGCTTCTACT 60.480 50.000 13.26 5.62 0.00 2.57
1557 1947 3.734293 GCTTCTACTCACGACATGTACCC 60.734 52.174 0.00 0.00 0.00 3.69
1559 1949 2.025605 TCTACTCACGACATGTACCCCT 60.026 50.000 0.00 0.00 0.00 4.79
1560 1950 2.519771 ACTCACGACATGTACCCCTA 57.480 50.000 0.00 0.00 0.00 3.53
1565 1955 0.249489 CGACATGTACCCCTAGCTGC 60.249 60.000 0.00 0.00 0.00 5.25
1566 1956 0.830648 GACATGTACCCCTAGCTGCA 59.169 55.000 0.00 0.00 0.00 4.41
1568 1958 0.179045 CATGTACCCCTAGCTGCACC 60.179 60.000 1.02 0.00 0.00 5.01
1604 1996 1.789523 GCCCTAGGGATGTACTGTGA 58.210 55.000 33.21 0.00 37.50 3.58
1609 2001 5.163237 GCCCTAGGGATGTACTGTGAAATTA 60.163 44.000 33.21 0.00 37.50 1.40
1610 2002 6.525629 CCCTAGGGATGTACTGTGAAATTAG 58.474 44.000 24.99 0.00 37.50 1.73
1611 2003 6.099845 CCCTAGGGATGTACTGTGAAATTAGT 59.900 42.308 24.99 0.00 37.50 2.24
1612 2004 7.289317 CCCTAGGGATGTACTGTGAAATTAGTA 59.711 40.741 24.99 0.00 37.50 1.82
1613 2005 8.142551 CCTAGGGATGTACTGTGAAATTAGTAC 58.857 40.741 0.00 8.66 45.89 2.73
1614 2006 7.735326 AGGGATGTACTGTGAAATTAGTACT 57.265 36.000 14.38 0.00 45.88 2.73
1615 2007 7.783042 AGGGATGTACTGTGAAATTAGTACTC 58.217 38.462 14.38 10.26 45.88 2.59
1616 2008 6.985059 GGGATGTACTGTGAAATTAGTACTCC 59.015 42.308 14.38 15.69 45.88 3.85
1617 2009 6.985059 GGATGTACTGTGAAATTAGTACTCCC 59.015 42.308 14.38 11.75 45.88 4.30
1618 2010 7.147707 GGATGTACTGTGAAATTAGTACTCCCT 60.148 40.741 14.38 1.66 45.88 4.20
1619 2011 7.166691 TGTACTGTGAAATTAGTACTCCCTC 57.833 40.000 14.38 0.00 45.88 4.30
1620 2012 5.678955 ACTGTGAAATTAGTACTCCCTCC 57.321 43.478 0.00 0.00 0.00 4.30
1621 2013 5.091552 ACTGTGAAATTAGTACTCCCTCCA 58.908 41.667 0.00 0.00 0.00 3.86
1622 2014 5.726793 ACTGTGAAATTAGTACTCCCTCCAT 59.273 40.000 0.00 0.00 0.00 3.41
1623 2015 6.215636 ACTGTGAAATTAGTACTCCCTCCATT 59.784 38.462 0.00 0.00 0.00 3.16
1624 2016 6.650120 TGTGAAATTAGTACTCCCTCCATTC 58.350 40.000 0.00 0.00 0.00 2.67
1625 2017 6.056236 GTGAAATTAGTACTCCCTCCATTCC 58.944 44.000 0.00 0.00 0.00 3.01
1626 2018 5.729229 TGAAATTAGTACTCCCTCCATTCCA 59.271 40.000 0.00 0.00 0.00 3.53
1627 2019 6.389869 TGAAATTAGTACTCCCTCCATTCCAT 59.610 38.462 0.00 0.00 0.00 3.41
1628 2020 7.570982 TGAAATTAGTACTCCCTCCATTCCATA 59.429 37.037 0.00 0.00 0.00 2.74
1629 2021 7.947782 AATTAGTACTCCCTCCATTCCATAA 57.052 36.000 0.00 0.00 0.00 1.90
1630 2022 8.525729 AATTAGTACTCCCTCCATTCCATAAT 57.474 34.615 0.00 0.00 0.00 1.28
1631 2023 5.832539 AGTACTCCCTCCATTCCATAATG 57.167 43.478 0.00 0.00 41.90 1.90
1632 2024 5.227593 AGTACTCCCTCCATTCCATAATGT 58.772 41.667 0.00 0.00 40.84 2.71
1633 2025 6.390504 AGTACTCCCTCCATTCCATAATGTA 58.609 40.000 0.00 0.00 40.84 2.29
1634 2026 5.832539 ACTCCCTCCATTCCATAATGTAG 57.167 43.478 0.00 0.00 40.84 2.74
1635 2027 5.227593 ACTCCCTCCATTCCATAATGTAGT 58.772 41.667 0.00 0.00 40.84 2.73
1636 2028 5.072329 ACTCCCTCCATTCCATAATGTAGTG 59.928 44.000 0.00 0.00 40.84 2.74
1637 2029 4.074970 CCCTCCATTCCATAATGTAGTGC 58.925 47.826 0.00 0.00 40.84 4.40
1638 2030 4.202503 CCCTCCATTCCATAATGTAGTGCT 60.203 45.833 0.00 0.00 40.84 4.40
1639 2031 5.380043 CCTCCATTCCATAATGTAGTGCTT 58.620 41.667 0.00 0.00 40.84 3.91
1640 2032 5.471456 CCTCCATTCCATAATGTAGTGCTTC 59.529 44.000 0.00 0.00 40.84 3.86
1641 2033 5.376625 TCCATTCCATAATGTAGTGCTTCC 58.623 41.667 0.00 0.00 40.84 3.46
1642 2034 5.132648 TCCATTCCATAATGTAGTGCTTCCT 59.867 40.000 0.00 0.00 40.84 3.36
1643 2035 5.471456 CCATTCCATAATGTAGTGCTTCCTC 59.529 44.000 0.00 0.00 40.84 3.71
1644 2036 5.957771 TTCCATAATGTAGTGCTTCCTCT 57.042 39.130 0.00 0.00 0.00 3.69
1645 2037 7.445121 CATTCCATAATGTAGTGCTTCCTCTA 58.555 38.462 0.00 0.00 38.15 2.43
1646 2038 7.618019 TTCCATAATGTAGTGCTTCCTCTAT 57.382 36.000 0.00 0.00 0.00 1.98
1647 2039 7.233389 TCCATAATGTAGTGCTTCCTCTATC 57.767 40.000 0.00 0.00 0.00 2.08
1648 2040 6.211584 TCCATAATGTAGTGCTTCCTCTATCC 59.788 42.308 0.00 0.00 0.00 2.59
1649 2041 6.014242 CCATAATGTAGTGCTTCCTCTATCCA 60.014 42.308 0.00 0.00 0.00 3.41
1650 2042 4.946478 ATGTAGTGCTTCCTCTATCCAC 57.054 45.455 0.00 0.00 0.00 4.02
1651 2043 2.688446 TGTAGTGCTTCCTCTATCCACG 59.312 50.000 0.00 0.00 0.00 4.94
1652 2044 1.853963 AGTGCTTCCTCTATCCACGT 58.146 50.000 0.00 0.00 0.00 4.49
1653 2045 1.478510 AGTGCTTCCTCTATCCACGTG 59.521 52.381 9.08 9.08 0.00 4.49
1654 2046 0.175760 TGCTTCCTCTATCCACGTGC 59.824 55.000 10.91 0.00 0.00 5.34
1655 2047 0.461961 GCTTCCTCTATCCACGTGCT 59.538 55.000 10.91 1.67 0.00 4.40
1656 2048 1.134670 GCTTCCTCTATCCACGTGCTT 60.135 52.381 10.91 1.47 0.00 3.91
1657 2049 2.815478 CTTCCTCTATCCACGTGCTTC 58.185 52.381 10.91 0.00 0.00 3.86
1658 2050 1.847328 TCCTCTATCCACGTGCTTCA 58.153 50.000 10.91 0.00 0.00 3.02
1659 2051 2.176045 TCCTCTATCCACGTGCTTCAA 58.824 47.619 10.91 0.00 0.00 2.69
1660 2052 2.094182 TCCTCTATCCACGTGCTTCAAC 60.094 50.000 10.91 0.00 0.00 3.18
1661 2053 2.093973 CCTCTATCCACGTGCTTCAACT 60.094 50.000 10.91 0.00 0.00 3.16
1662 2054 3.589988 CTCTATCCACGTGCTTCAACTT 58.410 45.455 10.91 0.00 0.00 2.66
1663 2055 3.997021 CTCTATCCACGTGCTTCAACTTT 59.003 43.478 10.91 0.00 0.00 2.66
1664 2056 3.745975 TCTATCCACGTGCTTCAACTTTG 59.254 43.478 10.91 0.00 0.00 2.77
1665 2057 2.031258 TCCACGTGCTTCAACTTTGA 57.969 45.000 10.91 0.00 34.92 2.69
1666 2058 1.668751 TCCACGTGCTTCAACTTTGAC 59.331 47.619 10.91 0.00 36.83 3.18
1667 2059 1.268539 CCACGTGCTTCAACTTTGACC 60.269 52.381 10.91 0.00 36.83 4.02
1668 2060 0.655733 ACGTGCTTCAACTTTGACCG 59.344 50.000 0.00 0.00 36.83 4.79
1669 2061 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
1670 2062 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
1671 2063 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
1672 2064 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
1673 2065 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
1674 2066 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
1675 2067 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
1676 2068 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
1677 2069 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
1678 2070 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
1679 2071 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
1681 2073 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
1682 2074 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
1683 2075 7.120789 ACTTTGACCGTAAATTTAACTACCG 57.879 36.000 0.00 0.00 0.00 4.02
1684 2076 6.928492 ACTTTGACCGTAAATTTAACTACCGA 59.072 34.615 0.00 0.00 0.00 4.69
1685 2077 6.949578 TTGACCGTAAATTTAACTACCGAG 57.050 37.500 0.00 0.00 0.00 4.63
1686 2078 6.266168 TGACCGTAAATTTAACTACCGAGA 57.734 37.500 0.00 0.00 0.00 4.04
1687 2079 6.092748 TGACCGTAAATTTAACTACCGAGAC 58.907 40.000 0.00 0.00 0.00 3.36
1688 2080 5.410924 ACCGTAAATTTAACTACCGAGACC 58.589 41.667 0.00 0.00 0.00 3.85
1689 2081 4.500477 CCGTAAATTTAACTACCGAGACCG 59.500 45.833 0.00 0.00 0.00 4.79
1690 2082 5.331902 CGTAAATTTAACTACCGAGACCGA 58.668 41.667 0.00 0.00 38.22 4.69
1691 2083 5.973565 CGTAAATTTAACTACCGAGACCGAT 59.026 40.000 0.00 0.00 38.22 4.18
1692 2084 6.473455 CGTAAATTTAACTACCGAGACCGATT 59.527 38.462 0.00 0.00 38.22 3.34
1693 2085 6.657836 AAATTTAACTACCGAGACCGATTG 57.342 37.500 0.00 0.00 38.22 2.67
1694 2086 2.857592 TAACTACCGAGACCGATTGC 57.142 50.000 0.00 0.00 38.22 3.56
1695 2087 0.179145 AACTACCGAGACCGATTGCG 60.179 55.000 0.00 0.00 38.22 4.85
1720 2112 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
1721 2113 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
1722 2114 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
1723 2115 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
1724 2116 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
1725 2117 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
1726 2118 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
1772 2164 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
1773 2165 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
1774 2166 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
1775 2167 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
1782 2174 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
1783 2175 2.954753 GCCGCAGTTGGTCTCGTTG 61.955 63.158 0.00 0.00 0.00 4.10
1784 2176 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
1785 2177 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
1786 2178 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
1787 2179 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
1788 2180 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
1789 2181 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
1790 2182 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
1791 2183 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
1792 2184 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
1793 2185 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
1794 2186 7.590279 CAGTTGGTCTCGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
1795 2187 7.537306 CAGTTGGTCTCGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
1796 2188 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
1797 2189 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
1798 2190 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
1799 2191 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
1800 2192 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
1801 2193 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
1802 2194 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
1803 2195 6.864165 TCGTTGGTTAAATTTATGGTCAAAGC 59.136 34.615 0.00 0.00 0.00 3.51
1804 2196 6.866248 CGTTGGTTAAATTTATGGTCAAAGCT 59.134 34.615 0.00 0.00 0.00 3.74
1805 2197 7.148820 CGTTGGTTAAATTTATGGTCAAAGCTG 60.149 37.037 0.00 0.00 0.00 4.24
1806 2198 6.696411 TGGTTAAATTTATGGTCAAAGCTGG 58.304 36.000 0.00 0.00 0.00 4.85
1807 2199 6.495181 TGGTTAAATTTATGGTCAAAGCTGGA 59.505 34.615 0.00 0.00 0.00 3.86
1808 2200 6.811665 GGTTAAATTTATGGTCAAAGCTGGAC 59.188 38.462 9.69 9.69 34.52 4.02
1815 2207 2.550830 GTCAAAGCTGGACCTCAGAA 57.449 50.000 7.40 0.00 46.18 3.02
1816 2208 2.851195 GTCAAAGCTGGACCTCAGAAA 58.149 47.619 7.40 0.00 46.18 2.52
1817 2209 2.810852 GTCAAAGCTGGACCTCAGAAAG 59.189 50.000 7.40 0.00 46.18 2.62
1818 2210 1.538950 CAAAGCTGGACCTCAGAAAGC 59.461 52.381 0.00 0.00 46.18 3.51
1819 2211 0.321122 AAGCTGGACCTCAGAAAGCG 60.321 55.000 0.00 0.00 46.18 4.68
1820 2212 2.394563 GCTGGACCTCAGAAAGCGC 61.395 63.158 0.00 0.00 46.18 5.92
1821 2213 2.048222 TGGACCTCAGAAAGCGCG 60.048 61.111 0.00 0.00 0.00 6.86
1822 2214 2.815647 GGACCTCAGAAAGCGCGG 60.816 66.667 8.83 0.00 0.00 6.46
1823 2215 2.815647 GACCTCAGAAAGCGCGGG 60.816 66.667 8.83 0.00 0.00 6.13
1835 2227 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
1836 2228 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
1837 2229 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
1838 2230 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
1839 2231 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
1840 2232 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
1841 2233 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
1842 2234 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
1843 2235 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
1844 2236 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
1845 2237 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
1846 2238 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
1847 2239 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
1881 2278 1.389555 TGCATCTCCGTCGTGTCTAT 58.610 50.000 0.00 0.00 0.00 1.98
1903 2300 2.430921 GTGACGACGAGGCTGTGG 60.431 66.667 0.00 0.00 0.00 4.17
2046 3058 4.202503 ACATCCAGATCCAATCGGCTAATT 60.203 41.667 0.00 0.00 0.00 1.40
2064 3076 7.910683 CGGCTAATTTTCTTTTTCTATCACTCC 59.089 37.037 0.00 0.00 0.00 3.85
2106 3118 7.617533 CGTCATACACGTGATTGTATATTCA 57.382 36.000 25.01 0.00 44.07 2.57
2196 3251 6.282167 GTCTAACCTTATAGGGCAAACTCTC 58.718 44.000 0.00 0.00 40.58 3.20
2312 3383 0.826062 CAAATCCCAATGCCTCCACC 59.174 55.000 0.00 0.00 0.00 4.61
2329 3400 5.950549 CCTCCACCTCAGTTAGTAGTTTAGA 59.049 44.000 0.00 0.00 0.00 2.10
2362 3434 3.857157 TTAATCCTCATAGGTGTGGCC 57.143 47.619 0.00 0.00 38.57 5.36
2387 3460 0.459585 GTGGATGACGGCGCTTCTTA 60.460 55.000 6.90 0.00 0.00 2.10
2395 3468 0.847035 CGGCGCTTCTTATTCGAGTC 59.153 55.000 7.64 0.00 0.00 3.36
2425 3499 2.569404 AGCTCCAATCCTTCTCGAGTTT 59.431 45.455 13.13 0.00 0.00 2.66
2432 3506 4.608948 ATCCTTCTCGAGTTTGTCTGTT 57.391 40.909 13.13 0.00 0.00 3.16
2492 3566 1.497309 TTCCTGGGGCGATGAGGTTT 61.497 55.000 0.00 0.00 0.00 3.27
2501 3575 2.755103 GGCGATGAGGTTTGGATTTCTT 59.245 45.455 0.00 0.00 0.00 2.52
2512 3586 7.410174 AGGTTTGGATTTCTTGTCATATGGTA 58.590 34.615 2.13 0.00 0.00 3.25
2536 3610 6.875972 AGATTTGGTGTCTAGGTACTTCAT 57.124 37.500 0.00 0.00 41.75 2.57
2604 3678 2.716828 CTTAGCGACACGTGCACGG 61.717 63.158 39.21 29.52 44.95 4.94
2712 3786 1.068585 GTGGTCGTTCGGTGGTCTT 59.931 57.895 0.00 0.00 0.00 3.01
2863 3946 3.201266 ACTTTGGTGTAGTGGTCTTTGGA 59.799 43.478 0.00 0.00 0.00 3.53
2872 3955 0.104144 TGGTCTTTGGAAGGGGAGGA 60.104 55.000 0.00 0.00 0.00 3.71
2978 4061 1.207329 CTAGCCACAGTGGGGAGTAAC 59.793 57.143 18.10 0.00 38.19 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 2.046892 GGCGAAGAAGCAGAGCCA 60.047 61.111 0.00 0.00 46.48 4.75
105 107 2.383527 GGACAGCGTGGCGAAGAAG 61.384 63.158 0.00 0.00 0.00 2.85
115 120 2.049063 GCGAAGTGAGGACAGCGT 60.049 61.111 0.00 0.00 0.00 5.07
160 165 2.281139 TGCCAACGCGGTCATGAA 60.281 55.556 12.47 0.00 38.08 2.57
180 185 1.190643 CACCAAACCAACCACCACTT 58.809 50.000 0.00 0.00 0.00 3.16
181 186 0.686112 CCACCAAACCAACCACCACT 60.686 55.000 0.00 0.00 0.00 4.00
316 321 1.300233 GCGAGAGGAATGGTAGCCG 60.300 63.158 0.00 0.00 0.00 5.52
324 329 1.749638 ACGACGAGGCGAGAGGAAT 60.750 57.895 4.95 0.00 34.83 3.01
365 370 1.874019 GCGACGATGATGACGCTGT 60.874 57.895 0.00 0.00 46.60 4.40
373 378 0.955178 AGAAGGATCGCGACGATGAT 59.045 50.000 12.93 0.06 47.00 2.45
423 428 0.322008 CTTCCACTGGCTCCAAGACC 60.322 60.000 0.00 0.00 0.00 3.85
472 478 2.315901 GCGGATCAACAAAAACGAAGG 58.684 47.619 0.00 0.00 0.00 3.46
568 576 2.826725 AGCGAAGTATACAGGGATAGGC 59.173 50.000 5.50 0.00 0.00 3.93
582 590 1.102978 ACAAAGCAACCAAGCGAAGT 58.897 45.000 0.00 0.00 40.15 3.01
583 591 3.559238 ATACAAAGCAACCAAGCGAAG 57.441 42.857 0.00 0.00 40.15 3.79
588 596 6.928492 ACCATTTTGTATACAAAGCAACCAAG 59.072 34.615 25.62 11.01 45.34 3.61
628 636 9.939802 GGGACTCTATCTACAACTTTCTTTTAA 57.060 33.333 0.00 0.00 0.00 1.52
629 637 9.322769 AGGGACTCTATCTACAACTTTCTTTTA 57.677 33.333 0.00 0.00 0.00 1.52
630 638 8.208575 AGGGACTCTATCTACAACTTTCTTTT 57.791 34.615 0.00 0.00 0.00 2.27
631 639 7.800300 AGGGACTCTATCTACAACTTTCTTT 57.200 36.000 0.00 0.00 0.00 2.52
632 640 7.067251 CGTAGGGACTCTATCTACAACTTTCTT 59.933 40.741 0.00 0.00 41.75 2.52
633 641 6.543100 CGTAGGGACTCTATCTACAACTTTCT 59.457 42.308 0.00 0.00 41.75 2.52
634 642 6.541641 TCGTAGGGACTCTATCTACAACTTTC 59.458 42.308 0.00 0.00 41.75 2.62
635 643 6.421485 TCGTAGGGACTCTATCTACAACTTT 58.579 40.000 0.00 0.00 41.75 2.66
636 644 5.999044 TCGTAGGGACTCTATCTACAACTT 58.001 41.667 0.00 0.00 41.75 2.66
637 645 5.627182 TCGTAGGGACTCTATCTACAACT 57.373 43.478 0.00 0.00 41.75 3.16
638 646 5.587844 TGTTCGTAGGGACTCTATCTACAAC 59.412 44.000 0.00 0.00 41.75 3.32
639 647 5.748402 TGTTCGTAGGGACTCTATCTACAA 58.252 41.667 0.00 0.00 41.75 2.41
640 648 5.129980 TCTGTTCGTAGGGACTCTATCTACA 59.870 44.000 0.00 0.00 41.75 2.74
641 649 5.609423 TCTGTTCGTAGGGACTCTATCTAC 58.391 45.833 0.00 0.00 41.75 2.59
642 650 5.883685 TCTGTTCGTAGGGACTCTATCTA 57.116 43.478 0.00 0.00 41.75 1.98
643 651 4.774660 TCTGTTCGTAGGGACTCTATCT 57.225 45.455 0.00 0.00 41.75 1.98
644 652 5.589452 TCTTTCTGTTCGTAGGGACTCTATC 59.411 44.000 0.00 0.00 41.75 2.08
645 653 5.507637 TCTTTCTGTTCGTAGGGACTCTAT 58.492 41.667 0.00 0.00 41.75 1.98
646 654 4.914983 TCTTTCTGTTCGTAGGGACTCTA 58.085 43.478 0.00 0.00 41.75 2.43
647 655 3.764218 TCTTTCTGTTCGTAGGGACTCT 58.236 45.455 0.00 0.00 41.75 3.24
648 656 4.674475 GATCTTTCTGTTCGTAGGGACTC 58.326 47.826 0.00 0.00 41.75 3.36
649 657 3.128938 CGATCTTTCTGTTCGTAGGGACT 59.871 47.826 0.00 0.00 46.37 3.85
650 658 3.119566 ACGATCTTTCTGTTCGTAGGGAC 60.120 47.826 0.00 0.00 45.70 4.46
651 659 3.087031 ACGATCTTTCTGTTCGTAGGGA 58.913 45.455 0.00 0.00 45.70 4.20
652 660 3.179830 CACGATCTTTCTGTTCGTAGGG 58.820 50.000 0.00 0.00 45.76 3.53
653 661 3.119602 TCCACGATCTTTCTGTTCGTAGG 60.120 47.826 0.00 0.00 45.76 3.18
654 662 4.092771 TCCACGATCTTTCTGTTCGTAG 57.907 45.455 0.00 0.00 45.76 3.51
655 663 3.119602 CCTCCACGATCTTTCTGTTCGTA 60.120 47.826 0.00 0.00 45.76 3.43
657 665 2.094700 TCCTCCACGATCTTTCTGTTCG 60.095 50.000 0.00 0.00 41.94 3.95
658 666 3.594603 TCCTCCACGATCTTTCTGTTC 57.405 47.619 0.00 0.00 0.00 3.18
659 667 4.040461 TCTTTCCTCCACGATCTTTCTGTT 59.960 41.667 0.00 0.00 0.00 3.16
660 668 3.578716 TCTTTCCTCCACGATCTTTCTGT 59.421 43.478 0.00 0.00 0.00 3.41
661 669 4.193826 TCTTTCCTCCACGATCTTTCTG 57.806 45.455 0.00 0.00 0.00 3.02
662 670 4.040461 TGTTCTTTCCTCCACGATCTTTCT 59.960 41.667 0.00 0.00 0.00 2.52
663 671 4.152580 GTGTTCTTTCCTCCACGATCTTTC 59.847 45.833 0.00 0.00 0.00 2.62
664 672 4.065789 GTGTTCTTTCCTCCACGATCTTT 58.934 43.478 0.00 0.00 0.00 2.52
665 673 3.071023 TGTGTTCTTTCCTCCACGATCTT 59.929 43.478 0.00 0.00 0.00 2.40
666 674 2.632996 TGTGTTCTTTCCTCCACGATCT 59.367 45.455 0.00 0.00 0.00 2.75
667 675 2.996621 CTGTGTTCTTTCCTCCACGATC 59.003 50.000 0.00 0.00 0.00 3.69
668 676 2.632996 TCTGTGTTCTTTCCTCCACGAT 59.367 45.455 0.00 0.00 0.00 3.73
669 677 2.036387 TCTGTGTTCTTTCCTCCACGA 58.964 47.619 0.00 0.00 0.00 4.35
670 678 2.135933 GTCTGTGTTCTTTCCTCCACG 58.864 52.381 0.00 0.00 0.00 4.94
671 679 2.135933 CGTCTGTGTTCTTTCCTCCAC 58.864 52.381 0.00 0.00 0.00 4.02
672 680 1.070134 CCGTCTGTGTTCTTTCCTCCA 59.930 52.381 0.00 0.00 0.00 3.86
673 681 1.343465 TCCGTCTGTGTTCTTTCCTCC 59.657 52.381 0.00 0.00 0.00 4.30
674 682 2.814280 TCCGTCTGTGTTCTTTCCTC 57.186 50.000 0.00 0.00 0.00 3.71
675 683 2.698797 TCTTCCGTCTGTGTTCTTTCCT 59.301 45.455 0.00 0.00 0.00 3.36
676 684 2.801111 GTCTTCCGTCTGTGTTCTTTCC 59.199 50.000 0.00 0.00 0.00 3.13
677 685 2.801111 GGTCTTCCGTCTGTGTTCTTTC 59.199 50.000 0.00 0.00 0.00 2.62
678 686 2.484947 GGGTCTTCCGTCTGTGTTCTTT 60.485 50.000 0.00 0.00 33.83 2.52
679 687 1.070289 GGGTCTTCCGTCTGTGTTCTT 59.930 52.381 0.00 0.00 33.83 2.52
680 688 0.680061 GGGTCTTCCGTCTGTGTTCT 59.320 55.000 0.00 0.00 33.83 3.01
681 689 0.391597 TGGGTCTTCCGTCTGTGTTC 59.608 55.000 0.00 0.00 38.76 3.18
682 690 0.106149 GTGGGTCTTCCGTCTGTGTT 59.894 55.000 0.00 0.00 38.76 3.32
683 691 1.746517 GTGGGTCTTCCGTCTGTGT 59.253 57.895 0.00 0.00 38.76 3.72
684 692 1.004918 GGTGGGTCTTCCGTCTGTG 60.005 63.158 0.00 0.00 38.76 3.66
685 693 1.152312 AGGTGGGTCTTCCGTCTGT 60.152 57.895 0.00 0.00 38.76 3.41
686 694 0.900647 AGAGGTGGGTCTTCCGTCTG 60.901 60.000 0.00 0.00 38.76 3.51
687 695 0.612453 GAGAGGTGGGTCTTCCGTCT 60.612 60.000 0.00 0.00 38.76 4.18
688 696 0.612453 AGAGAGGTGGGTCTTCCGTC 60.612 60.000 0.00 0.00 38.76 4.79
689 697 0.900647 CAGAGAGGTGGGTCTTCCGT 60.901 60.000 0.00 0.00 38.76 4.69
690 698 0.900647 ACAGAGAGGTGGGTCTTCCG 60.901 60.000 0.00 0.00 38.76 4.30
691 699 0.610687 CACAGAGAGGTGGGTCTTCC 59.389 60.000 0.00 0.00 35.13 3.46
692 700 0.036858 GCACAGAGAGGTGGGTCTTC 60.037 60.000 0.00 0.00 39.19 2.87
693 701 1.821061 CGCACAGAGAGGTGGGTCTT 61.821 60.000 0.00 0.00 44.11 3.01
694 702 2.279069 CGCACAGAGAGGTGGGTCT 61.279 63.158 0.00 0.00 44.11 3.85
695 703 2.262915 CGCACAGAGAGGTGGGTC 59.737 66.667 0.00 0.00 44.11 4.46
698 706 1.373497 GTGTCGCACAGAGAGGTGG 60.373 63.158 5.30 0.00 39.19 4.61
699 707 1.730902 CGTGTCGCACAGAGAGGTG 60.731 63.158 9.95 0.00 41.72 4.00
700 708 2.194212 ACGTGTCGCACAGAGAGGT 61.194 57.895 9.95 0.00 36.58 3.85
701 709 1.730902 CACGTGTCGCACAGAGAGG 60.731 63.158 7.58 0.00 33.40 3.69
702 710 1.730902 CCACGTGTCGCACAGAGAG 60.731 63.158 15.65 0.00 33.40 3.20
703 711 2.335011 CCACGTGTCGCACAGAGA 59.665 61.111 15.65 0.00 33.40 3.10
704 712 3.406361 GCCACGTGTCGCACAGAG 61.406 66.667 15.65 0.00 33.40 3.35
705 713 3.724914 TTGCCACGTGTCGCACAGA 62.725 57.895 17.47 2.74 33.97 3.41
706 714 2.818487 TTTGCCACGTGTCGCACAG 61.818 57.895 17.47 0.34 33.97 3.66
707 715 2.820037 TTTGCCACGTGTCGCACA 60.820 55.556 17.47 9.84 33.97 4.57
708 716 2.351888 GTTTGCCACGTGTCGCAC 60.352 61.111 17.47 5.51 33.97 5.34
709 717 2.512745 AGTTTGCCACGTGTCGCA 60.513 55.556 15.65 14.96 0.00 5.10
710 718 2.042520 TTCAGTTTGCCACGTGTCGC 62.043 55.000 15.65 12.30 0.00 5.19
711 719 0.586319 ATTCAGTTTGCCACGTGTCG 59.414 50.000 15.65 0.51 0.00 4.35
712 720 1.873591 AGATTCAGTTTGCCACGTGTC 59.126 47.619 15.65 0.98 0.00 3.67
713 721 1.873591 GAGATTCAGTTTGCCACGTGT 59.126 47.619 15.65 0.00 0.00 4.49
714 722 1.872952 TGAGATTCAGTTTGCCACGTG 59.127 47.619 9.08 9.08 0.00 4.49
715 723 2.254546 TGAGATTCAGTTTGCCACGT 57.745 45.000 0.00 0.00 0.00 4.49
716 724 3.558505 CTTTGAGATTCAGTTTGCCACG 58.441 45.455 0.00 0.00 0.00 4.94
717 725 3.243501 TGCTTTGAGATTCAGTTTGCCAC 60.244 43.478 0.00 0.00 0.00 5.01
718 726 2.957680 TGCTTTGAGATTCAGTTTGCCA 59.042 40.909 0.00 0.00 0.00 4.92
719 727 3.572584 CTGCTTTGAGATTCAGTTTGCC 58.427 45.455 0.00 0.00 0.00 4.52
720 728 2.985139 GCTGCTTTGAGATTCAGTTTGC 59.015 45.455 0.00 0.00 0.00 3.68
721 729 3.005050 TGGCTGCTTTGAGATTCAGTTTG 59.995 43.478 0.00 0.00 0.00 2.93
722 730 3.225104 TGGCTGCTTTGAGATTCAGTTT 58.775 40.909 0.00 0.00 0.00 2.66
723 731 2.867624 TGGCTGCTTTGAGATTCAGTT 58.132 42.857 0.00 0.00 0.00 3.16
724 732 2.574006 TGGCTGCTTTGAGATTCAGT 57.426 45.000 0.00 0.00 0.00 3.41
725 733 5.571784 TTAATGGCTGCTTTGAGATTCAG 57.428 39.130 0.00 0.00 0.00 3.02
726 734 5.068198 GGATTAATGGCTGCTTTGAGATTCA 59.932 40.000 0.00 0.00 0.00 2.57
727 735 5.508657 GGGATTAATGGCTGCTTTGAGATTC 60.509 44.000 0.00 0.00 0.00 2.52
728 736 4.343239 GGGATTAATGGCTGCTTTGAGATT 59.657 41.667 0.00 0.00 0.00 2.40
729 737 3.893813 GGGATTAATGGCTGCTTTGAGAT 59.106 43.478 0.00 0.00 0.00 2.75
730 738 3.290710 GGGATTAATGGCTGCTTTGAGA 58.709 45.455 0.00 0.00 0.00 3.27
731 739 2.363359 GGGGATTAATGGCTGCTTTGAG 59.637 50.000 0.00 0.00 0.00 3.02
732 740 2.024080 AGGGGATTAATGGCTGCTTTGA 60.024 45.455 0.00 0.00 0.00 2.69
733 741 2.391678 AGGGGATTAATGGCTGCTTTG 58.608 47.619 0.00 0.00 0.00 2.77
734 742 2.854736 AGGGGATTAATGGCTGCTTT 57.145 45.000 0.00 0.00 0.00 3.51
735 743 2.670939 GAAGGGGATTAATGGCTGCTT 58.329 47.619 0.00 0.00 0.00 3.91
736 744 1.477558 CGAAGGGGATTAATGGCTGCT 60.478 52.381 0.00 0.00 0.00 4.24
737 745 0.954452 CGAAGGGGATTAATGGCTGC 59.046 55.000 0.00 0.00 0.00 5.25
738 746 0.954452 GCGAAGGGGATTAATGGCTG 59.046 55.000 0.00 0.00 0.00 4.85
739 747 0.178990 GGCGAAGGGGATTAATGGCT 60.179 55.000 0.00 0.00 0.00 4.75
740 748 0.467290 TGGCGAAGGGGATTAATGGC 60.467 55.000 0.00 0.00 0.00 4.40
741 749 2.065899 TTGGCGAAGGGGATTAATGG 57.934 50.000 0.00 0.00 0.00 3.16
742 750 3.005791 GGATTTGGCGAAGGGGATTAATG 59.994 47.826 0.00 0.00 0.00 1.90
743 751 3.230976 GGATTTGGCGAAGGGGATTAAT 58.769 45.455 0.00 0.00 0.00 1.40
744 752 2.661718 GGATTTGGCGAAGGGGATTAA 58.338 47.619 0.00 0.00 0.00 1.40
745 753 1.133606 GGGATTTGGCGAAGGGGATTA 60.134 52.381 0.00 0.00 0.00 1.75
746 754 0.397114 GGGATTTGGCGAAGGGGATT 60.397 55.000 0.00 0.00 0.00 3.01
747 755 1.230212 GGGATTTGGCGAAGGGGAT 59.770 57.895 0.00 0.00 0.00 3.85
748 756 1.794885 TTGGGATTTGGCGAAGGGGA 61.795 55.000 0.00 0.00 0.00 4.81
749 757 0.687427 ATTGGGATTTGGCGAAGGGG 60.687 55.000 0.00 0.00 0.00 4.79
750 758 1.194218 AATTGGGATTTGGCGAAGGG 58.806 50.000 0.00 0.00 0.00 3.95
751 759 2.497273 AGAAATTGGGATTTGGCGAAGG 59.503 45.455 0.00 0.00 35.65 3.46
752 760 3.874392 AGAAATTGGGATTTGGCGAAG 57.126 42.857 0.00 0.00 35.65 3.79
753 761 5.930837 AATAGAAATTGGGATTTGGCGAA 57.069 34.783 0.00 0.00 35.65 4.70
754 762 5.009610 GCTAATAGAAATTGGGATTTGGCGA 59.990 40.000 0.00 0.00 35.65 5.54
755 763 5.222631 GCTAATAGAAATTGGGATTTGGCG 58.777 41.667 0.00 0.00 35.65 5.69
756 764 5.511373 GGGCTAATAGAAATTGGGATTTGGC 60.511 44.000 0.00 0.00 35.65 4.52
757 765 5.278957 CGGGCTAATAGAAATTGGGATTTGG 60.279 44.000 0.00 0.00 35.65 3.28
758 766 5.278957 CCGGGCTAATAGAAATTGGGATTTG 60.279 44.000 0.00 0.00 35.65 2.32
759 767 4.832823 CCGGGCTAATAGAAATTGGGATTT 59.167 41.667 0.00 0.00 38.16 2.17
760 768 4.407365 CCGGGCTAATAGAAATTGGGATT 58.593 43.478 0.00 0.00 0.00 3.01
761 769 3.245264 CCCGGGCTAATAGAAATTGGGAT 60.245 47.826 8.08 0.00 36.17 3.85
762 770 2.107552 CCCGGGCTAATAGAAATTGGGA 59.892 50.000 8.08 0.00 36.17 4.37
763 771 2.158519 ACCCGGGCTAATAGAAATTGGG 60.159 50.000 24.08 0.00 40.04 4.12
764 772 3.223674 ACCCGGGCTAATAGAAATTGG 57.776 47.619 24.08 0.00 0.00 3.16
765 773 4.204012 TGAACCCGGGCTAATAGAAATTG 58.796 43.478 24.08 0.00 0.00 2.32
766 774 4.513406 TGAACCCGGGCTAATAGAAATT 57.487 40.909 24.08 2.08 0.00 1.82
767 775 4.513406 TTGAACCCGGGCTAATAGAAAT 57.487 40.909 24.08 0.00 0.00 2.17
768 776 4.204012 CATTGAACCCGGGCTAATAGAAA 58.796 43.478 24.08 4.31 0.00 2.52
769 777 3.201266 ACATTGAACCCGGGCTAATAGAA 59.799 43.478 24.08 4.13 0.00 2.10
770 778 2.775384 ACATTGAACCCGGGCTAATAGA 59.225 45.455 24.08 0.00 0.00 1.98
771 779 3.208747 ACATTGAACCCGGGCTAATAG 57.791 47.619 24.08 9.90 0.00 1.73
772 780 3.054287 TGAACATTGAACCCGGGCTAATA 60.054 43.478 24.08 2.29 0.00 0.98
773 781 2.291282 TGAACATTGAACCCGGGCTAAT 60.291 45.455 24.08 15.93 0.00 1.73
774 782 1.074084 TGAACATTGAACCCGGGCTAA 59.926 47.619 24.08 14.12 0.00 3.09
775 783 0.693622 TGAACATTGAACCCGGGCTA 59.306 50.000 24.08 3.58 0.00 3.93
776 784 0.178975 TTGAACATTGAACCCGGGCT 60.179 50.000 24.08 8.98 0.00 5.19
777 785 0.676736 TTTGAACATTGAACCCGGGC 59.323 50.000 24.08 5.60 0.00 6.13
778 786 1.960689 ACTTTGAACATTGAACCCGGG 59.039 47.619 22.25 22.25 0.00 5.73
779 787 3.067461 TGAACTTTGAACATTGAACCCGG 59.933 43.478 0.00 0.00 0.00 5.73
780 788 4.300189 TGAACTTTGAACATTGAACCCG 57.700 40.909 0.00 0.00 0.00 5.28
781 789 6.106003 AGTTTGAACTTTGAACATTGAACCC 58.894 36.000 0.00 0.00 35.21 4.11
782 790 6.255670 GGAGTTTGAACTTTGAACATTGAACC 59.744 38.462 0.00 0.00 39.88 3.62
783 791 6.811170 TGGAGTTTGAACTTTGAACATTGAAC 59.189 34.615 0.00 0.00 39.88 3.18
784 792 6.929625 TGGAGTTTGAACTTTGAACATTGAA 58.070 32.000 0.00 0.00 39.88 2.69
785 793 6.522625 TGGAGTTTGAACTTTGAACATTGA 57.477 33.333 0.00 0.00 39.88 2.57
786 794 5.232838 GCTGGAGTTTGAACTTTGAACATTG 59.767 40.000 0.00 0.00 39.88 2.82
787 795 5.351458 GCTGGAGTTTGAACTTTGAACATT 58.649 37.500 0.00 0.00 39.88 2.71
788 796 4.202151 GGCTGGAGTTTGAACTTTGAACAT 60.202 41.667 0.00 0.00 39.88 2.71
789 797 3.130340 GGCTGGAGTTTGAACTTTGAACA 59.870 43.478 0.00 0.00 39.88 3.18
790 798 3.706698 GGCTGGAGTTTGAACTTTGAAC 58.293 45.455 0.00 0.00 39.88 3.18
791 799 2.357637 CGGCTGGAGTTTGAACTTTGAA 59.642 45.455 0.00 0.00 39.88 2.69
792 800 1.946768 CGGCTGGAGTTTGAACTTTGA 59.053 47.619 0.00 0.00 39.88 2.69
793 801 1.600413 GCGGCTGGAGTTTGAACTTTG 60.600 52.381 0.00 0.00 39.88 2.77
794 802 0.668535 GCGGCTGGAGTTTGAACTTT 59.331 50.000 0.00 0.00 39.88 2.66
795 803 1.172812 GGCGGCTGGAGTTTGAACTT 61.173 55.000 0.00 0.00 39.88 2.66
796 804 1.600916 GGCGGCTGGAGTTTGAACT 60.601 57.895 0.00 0.00 43.16 3.01
797 805 2.954611 GGCGGCTGGAGTTTGAAC 59.045 61.111 0.00 0.00 0.00 3.18
798 806 2.668212 CGGCGGCTGGAGTTTGAA 60.668 61.111 7.61 0.00 0.00 2.69
799 807 4.697756 CCGGCGGCTGGAGTTTGA 62.698 66.667 23.67 0.00 29.82 2.69
838 846 3.372676 GAGCGCACAGGCAACGATG 62.373 63.158 11.47 0.00 46.39 3.84
839 847 3.121030 GAGCGCACAGGCAACGAT 61.121 61.111 11.47 0.00 46.39 3.73
842 850 4.077188 GACGAGCGCACAGGCAAC 62.077 66.667 11.47 0.00 41.24 4.17
846 854 3.175240 CTTCGACGAGCGCACAGG 61.175 66.667 11.47 0.00 40.61 4.00
847 855 2.126850 TCTTCGACGAGCGCACAG 60.127 61.111 11.47 2.09 40.61 3.66
848 856 2.428569 GTCTTCGACGAGCGCACA 60.429 61.111 11.47 0.00 40.61 4.57
849 857 2.428569 TGTCTTCGACGAGCGCAC 60.429 61.111 11.47 0.96 40.61 5.34
850 858 2.126850 CTGTCTTCGACGAGCGCA 60.127 61.111 11.47 0.00 40.61 6.09
851 859 2.876645 CCTGTCTTCGACGAGCGC 60.877 66.667 0.00 0.00 40.61 5.92
852 860 1.797933 CACCTGTCTTCGACGAGCG 60.798 63.158 0.00 0.00 42.69 5.03
853 861 2.089349 GCACCTGTCTTCGACGAGC 61.089 63.158 0.00 0.00 34.95 5.03
854 862 0.318699 TTGCACCTGTCTTCGACGAG 60.319 55.000 0.00 0.00 34.95 4.18
855 863 0.596600 GTTGCACCTGTCTTCGACGA 60.597 55.000 0.00 0.00 34.95 4.20
856 864 0.597637 AGTTGCACCTGTCTTCGACG 60.598 55.000 0.00 0.00 34.95 5.12
857 865 1.140816 GAGTTGCACCTGTCTTCGAC 58.859 55.000 0.00 0.00 0.00 4.20
858 866 1.000163 GAGAGTTGCACCTGTCTTCGA 60.000 52.381 0.75 0.00 0.00 3.71
859 867 1.423395 GAGAGTTGCACCTGTCTTCG 58.577 55.000 0.75 0.00 0.00 3.79
860 868 1.070758 TGGAGAGTTGCACCTGTCTTC 59.929 52.381 8.33 0.00 0.00 2.87
861 869 1.071385 CTGGAGAGTTGCACCTGTCTT 59.929 52.381 8.33 0.00 0.00 3.01
862 870 0.683973 CTGGAGAGTTGCACCTGTCT 59.316 55.000 8.33 0.00 0.00 3.41
863 871 0.952984 GCTGGAGAGTTGCACCTGTC 60.953 60.000 0.00 0.00 0.00 3.51
864 872 1.072159 GCTGGAGAGTTGCACCTGT 59.928 57.895 0.00 0.00 0.00 4.00
865 873 1.071987 TGCTGGAGAGTTGCACCTG 59.928 57.895 0.00 0.00 0.00 4.00
866 874 3.567308 TGCTGGAGAGTTGCACCT 58.433 55.556 0.00 0.00 0.00 4.00
869 877 2.031012 CCGTGCTGGAGAGTTGCA 59.969 61.111 0.00 0.00 42.00 4.08
870 878 1.598130 AACCGTGCTGGAGAGTTGC 60.598 57.895 2.38 0.00 42.00 4.17
871 879 1.230635 CCAACCGTGCTGGAGAGTTG 61.231 60.000 2.38 4.79 42.00 3.16
872 880 1.071471 CCAACCGTGCTGGAGAGTT 59.929 57.895 2.38 0.00 42.00 3.01
873 881 2.743718 CCAACCGTGCTGGAGAGT 59.256 61.111 2.38 0.00 42.00 3.24
874 882 2.743928 GCCAACCGTGCTGGAGAG 60.744 66.667 2.38 0.00 42.00 3.20
875 883 4.680237 CGCCAACCGTGCTGGAGA 62.680 66.667 2.38 0.00 42.00 3.71
960 968 9.925545 TGTGTCCTGACCTTTTATAGTACTATA 57.074 33.333 17.03 17.03 0.00 1.31
961 969 8.834004 TGTGTCCTGACCTTTTATAGTACTAT 57.166 34.615 19.07 19.07 0.00 2.12
994 1002 2.415893 GCCGGAATTGGTTCTGTGATTG 60.416 50.000 5.05 0.00 38.77 2.67
1114 1179 1.079819 CTCGCCTCCATGTTGTCGT 60.080 57.895 0.00 0.00 0.00 4.34
1189 1264 1.014044 GCAGAGATCGTTTGTCGCCA 61.014 55.000 0.00 0.00 39.67 5.69
1263 1341 1.690219 GACCTGAGGCCGGACATGAT 61.690 60.000 11.69 0.00 0.00 2.45
1439 1532 0.034059 AGTCGAAGAAGCAGGTGTGG 59.966 55.000 0.00 0.00 39.69 4.17
1543 1921 1.108776 GCTAGGGGTACATGTCGTGA 58.891 55.000 0.00 0.00 0.00 4.35
1557 1947 2.055042 AGGAGTCGGTGCAGCTAGG 61.055 63.158 14.92 0.00 0.00 3.02
1559 1949 3.006756 GCAGGAGTCGGTGCAGCTA 62.007 63.158 14.92 0.00 39.62 3.32
1560 1950 4.385405 GCAGGAGTCGGTGCAGCT 62.385 66.667 14.92 0.00 39.62 4.24
1565 1955 2.041115 TCTCTCGCAGGAGTCGGTG 61.041 63.158 3.39 0.00 41.26 4.94
1566 1956 2.041686 GTCTCTCGCAGGAGTCGGT 61.042 63.158 3.39 0.00 41.26 4.69
1568 1958 2.401592 CGTCTCTCGCAGGAGTCG 59.598 66.667 7.76 7.76 41.26 4.18
1592 1984 6.985059 GGGAGTACTAATTTCACAGTACATCC 59.015 42.308 15.34 16.10 46.26 3.51
1604 1996 6.848562 ATGGAATGGAGGGAGTACTAATTT 57.151 37.500 0.00 0.00 0.00 1.82
1609 2001 5.227593 ACATTATGGAATGGAGGGAGTACT 58.772 41.667 0.00 0.00 45.83 2.73
1610 2002 5.568620 ACATTATGGAATGGAGGGAGTAC 57.431 43.478 0.00 0.00 45.83 2.73
1611 2003 6.935240 CTACATTATGGAATGGAGGGAGTA 57.065 41.667 2.44 0.00 46.58 2.59
1612 2004 5.832539 CTACATTATGGAATGGAGGGAGT 57.167 43.478 2.44 0.00 46.58 3.85
1618 2010 5.132648 AGGAAGCACTACATTATGGAATGGA 59.867 40.000 0.00 0.00 45.83 3.41
1619 2011 5.380043 AGGAAGCACTACATTATGGAATGG 58.620 41.667 0.00 0.00 45.83 3.16
1620 2012 6.294473 AGAGGAAGCACTACATTATGGAATG 58.706 40.000 0.00 0.00 46.77 2.67
1621 2013 6.506538 AGAGGAAGCACTACATTATGGAAT 57.493 37.500 0.00 0.00 0.00 3.01
1622 2014 5.957771 AGAGGAAGCACTACATTATGGAA 57.042 39.130 0.00 0.00 0.00 3.53
1623 2015 6.211584 GGATAGAGGAAGCACTACATTATGGA 59.788 42.308 0.00 0.00 0.00 3.41
1624 2016 6.014242 TGGATAGAGGAAGCACTACATTATGG 60.014 42.308 0.00 0.00 0.00 2.74
1625 2017 6.870965 GTGGATAGAGGAAGCACTACATTATG 59.129 42.308 0.00 0.00 0.00 1.90
1626 2018 6.294787 CGTGGATAGAGGAAGCACTACATTAT 60.295 42.308 0.00 0.00 0.00 1.28
1627 2019 5.009710 CGTGGATAGAGGAAGCACTACATTA 59.990 44.000 0.00 0.00 0.00 1.90
1628 2020 4.202161 CGTGGATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
1629 2021 3.319405 CGTGGATAGAGGAAGCACTACAT 59.681 47.826 0.00 0.00 0.00 2.29
1630 2022 2.688446 CGTGGATAGAGGAAGCACTACA 59.312 50.000 0.00 0.00 0.00 2.74
1631 2023 2.688958 ACGTGGATAGAGGAAGCACTAC 59.311 50.000 0.00 0.00 0.00 2.73
1632 2024 2.688446 CACGTGGATAGAGGAAGCACTA 59.312 50.000 7.95 0.00 0.00 2.74
1633 2025 1.478510 CACGTGGATAGAGGAAGCACT 59.521 52.381 7.95 0.00 0.00 4.40
1634 2026 1.927895 CACGTGGATAGAGGAAGCAC 58.072 55.000 7.95 0.00 0.00 4.40
1635 2027 0.175760 GCACGTGGATAGAGGAAGCA 59.824 55.000 18.88 0.00 0.00 3.91
1636 2028 0.461961 AGCACGTGGATAGAGGAAGC 59.538 55.000 18.88 0.00 0.00 3.86
1637 2029 2.166459 TGAAGCACGTGGATAGAGGAAG 59.834 50.000 18.88 0.00 0.00 3.46
1638 2030 2.176045 TGAAGCACGTGGATAGAGGAA 58.824 47.619 18.88 0.00 0.00 3.36
1639 2031 1.847328 TGAAGCACGTGGATAGAGGA 58.153 50.000 18.88 0.00 0.00 3.71
1640 2032 2.093973 AGTTGAAGCACGTGGATAGAGG 60.094 50.000 18.88 0.00 0.00 3.69
1641 2033 3.238108 AGTTGAAGCACGTGGATAGAG 57.762 47.619 18.88 0.00 0.00 2.43
1642 2034 3.678056 AAGTTGAAGCACGTGGATAGA 57.322 42.857 18.88 0.00 0.00 1.98
1643 2035 3.745975 TCAAAGTTGAAGCACGTGGATAG 59.254 43.478 18.88 0.00 33.55 2.08
1644 2036 3.496884 GTCAAAGTTGAAGCACGTGGATA 59.503 43.478 18.88 0.00 39.21 2.59
1645 2037 2.290641 GTCAAAGTTGAAGCACGTGGAT 59.709 45.455 18.88 0.00 39.21 3.41
1646 2038 1.668751 GTCAAAGTTGAAGCACGTGGA 59.331 47.619 18.88 0.00 39.21 4.02
1647 2039 1.268539 GGTCAAAGTTGAAGCACGTGG 60.269 52.381 18.88 0.00 39.21 4.94
1648 2040 1.594518 CGGTCAAAGTTGAAGCACGTG 60.595 52.381 12.28 12.28 39.21 4.49
1649 2041 0.655733 CGGTCAAAGTTGAAGCACGT 59.344 50.000 0.00 0.00 39.21 4.49
1650 2042 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
1651 2043 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
1652 2044 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
1653 2045 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
1655 2047 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
1656 2048 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
1657 2049 7.531534 CGGTAGTTAAATTTACGGTCAAAGTTG 59.468 37.037 0.00 0.00 29.44 3.16
1658 2050 7.440856 TCGGTAGTTAAATTTACGGTCAAAGTT 59.559 33.333 0.00 0.00 31.36 2.66
1659 2051 6.928492 TCGGTAGTTAAATTTACGGTCAAAGT 59.072 34.615 0.00 0.00 0.00 2.66
1660 2052 7.329226 TCTCGGTAGTTAAATTTACGGTCAAAG 59.671 37.037 0.00 0.00 0.00 2.77
1661 2053 7.116233 GTCTCGGTAGTTAAATTTACGGTCAAA 59.884 37.037 0.00 0.00 0.00 2.69
1662 2054 6.586082 GTCTCGGTAGTTAAATTTACGGTCAA 59.414 38.462 0.00 0.00 0.00 3.18
1663 2055 6.092748 GTCTCGGTAGTTAAATTTACGGTCA 58.907 40.000 0.00 0.00 0.00 4.02
1664 2056 5.516696 GGTCTCGGTAGTTAAATTTACGGTC 59.483 44.000 0.00 0.00 0.00 4.79
1665 2057 5.410924 GGTCTCGGTAGTTAAATTTACGGT 58.589 41.667 0.00 0.00 0.00 4.83
1666 2058 4.500477 CGGTCTCGGTAGTTAAATTTACGG 59.500 45.833 0.00 0.00 0.00 4.02
1667 2059 5.331902 TCGGTCTCGGTAGTTAAATTTACG 58.668 41.667 0.00 0.00 36.95 3.18
1668 2060 7.615790 CAATCGGTCTCGGTAGTTAAATTTAC 58.384 38.462 0.00 0.00 36.95 2.01
1669 2061 6.256321 GCAATCGGTCTCGGTAGTTAAATTTA 59.744 38.462 0.00 0.00 36.95 1.40
1670 2062 5.064325 GCAATCGGTCTCGGTAGTTAAATTT 59.936 40.000 0.00 0.00 36.95 1.82
1671 2063 4.569564 GCAATCGGTCTCGGTAGTTAAATT 59.430 41.667 0.00 0.00 36.95 1.82
1672 2064 4.117685 GCAATCGGTCTCGGTAGTTAAAT 58.882 43.478 0.00 0.00 36.95 1.40
1673 2065 3.514645 GCAATCGGTCTCGGTAGTTAAA 58.485 45.455 0.00 0.00 36.95 1.52
1674 2066 2.478370 CGCAATCGGTCTCGGTAGTTAA 60.478 50.000 0.00 0.00 36.95 2.01
1675 2067 1.064505 CGCAATCGGTCTCGGTAGTTA 59.935 52.381 0.00 0.00 36.95 2.24
1676 2068 0.179145 CGCAATCGGTCTCGGTAGTT 60.179 55.000 0.00 0.00 36.95 2.24
1677 2069 1.432251 CGCAATCGGTCTCGGTAGT 59.568 57.895 0.00 0.00 36.95 2.73
1678 2070 4.303853 CGCAATCGGTCTCGGTAG 57.696 61.111 0.00 0.00 36.95 3.18
1689 2081 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
1690 2082 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
1691 2083 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
1692 2084 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
1693 2085 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
1694 2086 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
1695 2087 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
1696 2088 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
1697 2089 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
1698 2090 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
1699 2091 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
1700 2092 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
1755 2147 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
1756 2148 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
1757 2149 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
1758 2150 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
1765 2157 2.665185 AACGAGACCAACTGCGGC 60.665 61.111 0.00 0.00 0.00 6.53
1766 2158 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
1767 2159 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
1768 2160 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
1769 2161 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
1770 2162 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
1771 2163 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
1772 2164 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
1773 2165 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
1774 2166 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
1775 2167 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
1776 2168 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
1777 2169 7.061789 GCTTTGACCATAAATTTAACCAACGAG 59.938 37.037 1.21 2.26 0.00 4.18
1778 2170 6.864165 GCTTTGACCATAAATTTAACCAACGA 59.136 34.615 1.21 0.00 0.00 3.85
1779 2171 6.866248 AGCTTTGACCATAAATTTAACCAACG 59.134 34.615 1.21 3.96 0.00 4.10
1780 2172 7.117667 CCAGCTTTGACCATAAATTTAACCAAC 59.882 37.037 1.21 0.00 0.00 3.77
1781 2173 7.015682 TCCAGCTTTGACCATAAATTTAACCAA 59.984 33.333 1.21 2.19 0.00 3.67
1782 2174 6.495181 TCCAGCTTTGACCATAAATTTAACCA 59.505 34.615 1.21 0.00 0.00 3.67
1783 2175 6.811665 GTCCAGCTTTGACCATAAATTTAACC 59.188 38.462 1.21 0.00 0.00 2.85
1784 2176 7.812309 GTCCAGCTTTGACCATAAATTTAAC 57.188 36.000 1.21 0.00 0.00 2.01
1796 2188 2.550830 TTCTGAGGTCCAGCTTTGAC 57.449 50.000 4.83 4.83 42.62 3.18
1797 2189 2.811873 GCTTTCTGAGGTCCAGCTTTGA 60.812 50.000 0.00 0.00 42.62 2.69
1798 2190 1.538950 GCTTTCTGAGGTCCAGCTTTG 59.461 52.381 0.00 0.00 42.62 2.77
1799 2191 1.879796 CGCTTTCTGAGGTCCAGCTTT 60.880 52.381 0.00 0.00 42.62 3.51
1800 2192 0.321122 CGCTTTCTGAGGTCCAGCTT 60.321 55.000 0.00 0.00 42.62 3.74
1801 2193 1.294780 CGCTTTCTGAGGTCCAGCT 59.705 57.895 0.00 0.00 42.62 4.24
1802 2194 2.394563 GCGCTTTCTGAGGTCCAGC 61.395 63.158 0.00 0.00 42.62 4.85
1803 2195 2.097038 CGCGCTTTCTGAGGTCCAG 61.097 63.158 5.56 0.00 44.27 3.86
1804 2196 2.048222 CGCGCTTTCTGAGGTCCA 60.048 61.111 5.56 0.00 0.00 4.02
1805 2197 2.815647 CCGCGCTTTCTGAGGTCC 60.816 66.667 5.56 0.00 0.00 4.46
1806 2198 2.815647 CCCGCGCTTTCTGAGGTC 60.816 66.667 5.56 0.00 0.00 3.85
1818 2210 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
1819 2211 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
1820 2212 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
1821 2213 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
1822 2214 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
1823 2215 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
1824 2216 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
1825 2217 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
1826 2218 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
1827 2219 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
1828 2220 8.386264 ACATACTCCCTCCATTCCAAAATATAG 58.614 37.037 0.00 0.00 0.00 1.31
1829 2221 8.163408 CACATACTCCCTCCATTCCAAAATATA 58.837 37.037 0.00 0.00 0.00 0.86
1830 2222 7.006509 CACATACTCCCTCCATTCCAAAATAT 58.993 38.462 0.00 0.00 0.00 1.28
1831 2223 6.069088 ACACATACTCCCTCCATTCCAAAATA 60.069 38.462 0.00 0.00 0.00 1.40
1832 2224 5.203528 CACATACTCCCTCCATTCCAAAAT 58.796 41.667 0.00 0.00 0.00 1.82
1833 2225 4.044065 ACACATACTCCCTCCATTCCAAAA 59.956 41.667 0.00 0.00 0.00 2.44
1834 2226 3.591527 ACACATACTCCCTCCATTCCAAA 59.408 43.478 0.00 0.00 0.00 3.28
1835 2227 3.189606 ACACATACTCCCTCCATTCCAA 58.810 45.455 0.00 0.00 0.00 3.53
1836 2228 2.771943 GACACATACTCCCTCCATTCCA 59.228 50.000 0.00 0.00 0.00 3.53
1837 2229 2.104963 GGACACATACTCCCTCCATTCC 59.895 54.545 0.00 0.00 0.00 3.01
1838 2230 2.224066 CGGACACATACTCCCTCCATTC 60.224 54.545 0.00 0.00 0.00 2.67
1839 2231 1.762957 CGGACACATACTCCCTCCATT 59.237 52.381 0.00 0.00 0.00 3.16
1840 2232 1.063190 TCGGACACATACTCCCTCCAT 60.063 52.381 0.00 0.00 0.00 3.41
1841 2233 0.333652 TCGGACACATACTCCCTCCA 59.666 55.000 0.00 0.00 0.00 3.86
1842 2234 1.705873 ATCGGACACATACTCCCTCC 58.294 55.000 0.00 0.00 0.00 4.30
1843 2235 2.803492 GCAATCGGACACATACTCCCTC 60.803 54.545 0.00 0.00 0.00 4.30
1844 2236 1.139058 GCAATCGGACACATACTCCCT 59.861 52.381 0.00 0.00 0.00 4.20
1845 2237 1.134521 TGCAATCGGACACATACTCCC 60.135 52.381 0.00 0.00 0.00 4.30
1846 2238 2.309528 TGCAATCGGACACATACTCC 57.690 50.000 0.00 0.00 0.00 3.85
1881 2278 0.318699 CAGCCTCGTCGTCACAAAGA 60.319 55.000 0.00 0.00 0.00 2.52
2046 3058 8.215050 TGGTAACTGGAGTGATAGAAAAAGAAA 58.785 33.333 0.00 0.00 37.61 2.52
2064 3076 1.339235 CGTACGTGCGGTGGTAACTG 61.339 60.000 18.81 0.00 35.60 3.16
2132 3147 5.224888 CAAGGTGGTCAAAATCTTGTGATG 58.775 41.667 0.00 0.00 33.94 3.07
2271 3326 2.105128 CCTTCTGCCTACCGCTCG 59.895 66.667 0.00 0.00 38.78 5.03
2362 3434 2.511600 GCCGTCATCCACCCGAAG 60.512 66.667 0.00 0.00 0.00 3.79
2425 3499 5.484639 CGTCGATTACGTAAAAACAGACA 57.515 39.130 12.81 0.00 46.72 3.41
2492 3566 9.699410 AAATCTTACCATATGACAAGAAATCCA 57.301 29.630 17.54 1.47 31.25 3.41
2501 3575 6.957631 AGACACCAAATCTTACCATATGACA 58.042 36.000 3.65 0.00 0.00 3.58
2512 3586 6.681729 TGAAGTACCTAGACACCAAATCTT 57.318 37.500 0.00 0.00 0.00 2.40
2536 3610 9.923143 CGTCATTATTGAACCCTTACATAGATA 57.077 33.333 0.00 0.00 32.48 1.98
2555 3629 3.446161 CCCTGGAGTTGTAGTCGTCATTA 59.554 47.826 0.00 0.00 0.00 1.90
2604 3678 6.183360 CCTCGTAGATGACAACCAGAAATTTC 60.183 42.308 10.33 10.33 33.89 2.17
2863 3946 1.319799 CTCCATCCCTCCTCCCCTT 59.680 63.158 0.00 0.00 0.00 3.95
2872 3955 1.138568 CAGGAATCTGCTCCATCCCT 58.861 55.000 0.00 0.00 38.02 4.20
3000 4083 7.380423 AGAGGTAGCAACATGGACTAATAAT 57.620 36.000 0.00 0.00 0.00 1.28
3003 4086 8.492415 TTATAGAGGTAGCAACATGGACTAAT 57.508 34.615 0.00 0.00 0.00 1.73
3010 4093 5.013079 TCCCCATTATAGAGGTAGCAACATG 59.987 44.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.