Multiple sequence alignment - TraesCS2B01G235500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G235500 chr2B 100.000 2811 0 0 1 2811 235602062 235599252 0.000000e+00 5192.0
1 TraesCS2B01G235500 chr2B 96.671 1412 42 4 895 2304 235055754 235054346 0.000000e+00 2342.0
2 TraesCS2B01G235500 chr2B 96.640 506 16 1 2302 2807 235054187 235053683 0.000000e+00 839.0
3 TraesCS2B01G235500 chr2B 80.538 781 82 32 2 720 235900916 235900144 1.310000e-148 536.0
4 TraesCS2B01G235500 chr2B 89.698 398 39 2 1 397 235058089 235057693 1.030000e-139 507.0
5 TraesCS2B01G235500 chr2B 83.759 431 43 11 411 814 235057479 235057049 1.810000e-102 383.0
6 TraesCS2B01G235500 chr2B 100.000 200 0 0 3013 3212 235599050 235598851 1.410000e-98 370.0
7 TraesCS2B01G235500 chr2B 97.619 168 4 0 3045 3212 138740027 138739860 4.050000e-74 289.0
8 TraesCS2B01G235500 chr2A 93.660 2429 111 15 411 2806 193552449 193550031 0.000000e+00 3592.0
9 TraesCS2B01G235500 chr2A 91.477 176 15 0 239 414 193552661 193552486 3.200000e-60 243.0
10 TraesCS2B01G235500 chr2A 91.156 147 10 3 4 149 193576889 193576745 2.530000e-46 196.0
11 TraesCS2B01G235500 chr2A 90.411 146 13 1 4 149 193554589 193554445 1.180000e-44 191.0
12 TraesCS2B01G235500 chr2D 95.857 1907 73 2 905 2811 178857419 178855519 0.000000e+00 3079.0
13 TraesCS2B01G235500 chr2D 96.187 1390 51 2 1422 2811 178671187 178669800 0.000000e+00 2272.0
14 TraesCS2B01G235500 chr2D 92.839 1187 63 9 538 1715 178518615 178517442 0.000000e+00 1701.0
15 TraesCS2B01G235500 chr2D 95.369 691 25 5 2124 2811 178508683 178507997 0.000000e+00 1092.0
16 TraesCS2B01G235500 chr2D 86.076 869 73 16 2 838 178692841 178691989 0.000000e+00 891.0
17 TraesCS2B01G235500 chr2D 95.285 403 18 1 1024 1426 178691495 178691094 3.490000e-179 638.0
18 TraesCS2B01G235500 chr2D 94.595 370 20 0 1752 2121 178517450 178517081 9.990000e-160 573.0
19 TraesCS2B01G235500 chr2D 85.605 521 50 12 2 521 178525350 178524854 1.020000e-144 523.0
20 TraesCS2B01G235500 chr2D 83.036 224 29 5 537 754 178857809 178857589 9.090000e-46 195.0
21 TraesCS2B01G235500 chr6B 98.000 200 4 0 3013 3212 132660693 132660494 6.590000e-92 348.0
22 TraesCS2B01G235500 chr1B 97.500 200 5 0 3013 3212 494557204 494557005 3.070000e-90 342.0
23 TraesCS2B01G235500 chr1B 93.532 201 11 2 3013 3212 414554557 414554756 6.740000e-77 298.0
24 TraesCS2B01G235500 chr1B 76.800 125 29 0 1533 1657 632218138 632218262 1.600000e-08 71.3
25 TraesCS2B01G235500 chr1B 90.698 43 3 1 6 47 558369900 558369942 4.480000e-04 56.5
26 TraesCS2B01G235500 chr7B 74.539 868 168 37 1029 1874 684930435 684931271 2.390000e-86 329.0
27 TraesCS2B01G235500 chr7B 75.874 572 123 12 1046 1614 693258593 693258034 8.780000e-71 278.0
28 TraesCS2B01G235500 chr7B 72.315 596 120 30 1297 1874 684935963 684936531 9.290000e-31 145.0
29 TraesCS2B01G235500 chr7B 82.927 82 11 1 2163 2241 695708106 695708187 1.600000e-08 71.3
30 TraesCS2B01G235500 chrUn 74.678 853 161 39 1045 1874 421073048 421072228 8.590000e-86 327.0
31 TraesCS2B01G235500 chrUn 72.315 596 120 30 1297 1874 419113180 419113748 9.290000e-31 145.0
32 TraesCS2B01G235500 chrUn 85.526 76 11 0 2163 2238 77485922 77485847 2.660000e-11 80.5
33 TraesCS2B01G235500 chr5A 97.283 184 3 1 3029 3212 651583725 651583544 8.650000e-81 311.0
34 TraesCS2B01G235500 chr7A 76.329 583 119 14 1049 1626 699865781 699865213 8.710000e-76 294.0
35 TraesCS2B01G235500 chr7A 82.857 105 14 4 314 418 171374702 171374602 1.230000e-14 91.6
36 TraesCS2B01G235500 chr7A 74.877 203 39 8 2163 2357 700073174 700072976 7.390000e-12 82.4
37 TraesCS2B01G235500 chr7A 74.825 143 34 2 264 405 696090021 696089880 2.680000e-06 63.9
38 TraesCS2B01G235500 chr7D 76.172 512 93 20 1136 1635 609412545 609412051 3.200000e-60 243.0
39 TraesCS2B01G235500 chr7D 87.097 62 5 1 2163 2221 609649084 609649145 2.070000e-07 67.6
40 TraesCS2B01G235500 chr4A 97.500 120 2 1 3094 3212 718010666 718010547 1.510000e-48 204.0
41 TraesCS2B01G235500 chr3B 88.525 61 6 1 346 405 726360070 726360130 4.440000e-09 73.1
42 TraesCS2B01G235500 chr1D 90.385 52 3 2 2 52 413737908 413737958 2.070000e-07 67.6
43 TraesCS2B01G235500 chr1D 81.944 72 11 2 63 133 294215191 294215261 3.460000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G235500 chr2B 235598851 235602062 3211 True 2781.00 5192 100.000000 1 3212 2 chr2B.!!$R4 3211
1 TraesCS2B01G235500 chr2B 235053683 235058089 4406 True 1017.75 2342 91.692000 1 2807 4 chr2B.!!$R3 2806
2 TraesCS2B01G235500 chr2B 235900144 235900916 772 True 536.00 536 80.538000 2 720 1 chr2B.!!$R2 718
3 TraesCS2B01G235500 chr2A 193550031 193554589 4558 True 1342.00 3592 91.849333 4 2806 3 chr2A.!!$R2 2802
4 TraesCS2B01G235500 chr2D 178669800 178671187 1387 True 2272.00 2272 96.187000 1422 2811 1 chr2D.!!$R3 1389
5 TraesCS2B01G235500 chr2D 178855519 178857809 2290 True 1637.00 3079 89.446500 537 2811 2 chr2D.!!$R6 2274
6 TraesCS2B01G235500 chr2D 178517081 178518615 1534 True 1137.00 1701 93.717000 538 2121 2 chr2D.!!$R4 1583
7 TraesCS2B01G235500 chr2D 178507997 178508683 686 True 1092.00 1092 95.369000 2124 2811 1 chr2D.!!$R1 687
8 TraesCS2B01G235500 chr2D 178691094 178692841 1747 True 764.50 891 90.680500 2 1426 2 chr2D.!!$R5 1424
9 TraesCS2B01G235500 chr7B 684930435 684931271 836 False 329.00 329 74.539000 1029 1874 1 chr7B.!!$F1 845
10 TraesCS2B01G235500 chr7B 693258034 693258593 559 True 278.00 278 75.874000 1046 1614 1 chr7B.!!$R1 568
11 TraesCS2B01G235500 chrUn 421072228 421073048 820 True 327.00 327 74.678000 1045 1874 1 chrUn.!!$R2 829
12 TraesCS2B01G235500 chr7A 699865213 699865781 568 True 294.00 294 76.329000 1049 1626 1 chr7A.!!$R3 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 49 0.254747 TTTCTTCATGCCTACCCCCG 59.745 55.0 0.0 0.0 0.00 5.73 F
379 2098 0.312729 TGCTTGTAGTCGTCGCTTGA 59.687 50.0 0.0 0.0 0.00 3.02 F
1845 5185 0.171007 CACCGATTGCCATTGTGGAC 59.829 55.0 0.0 0.0 40.96 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 5128 0.181350 GGAGGTCGGCAATGGAGAAT 59.819 55.0 0.00 0.0 0.00 2.40 R
1970 5310 1.221635 ACCGGATTCCAATGGGATCA 58.778 50.0 21.35 0.0 44.48 2.92 R
3123 6631 0.034198 TCGCTGTTTCATGGGAACGA 59.966 50.0 0.00 0.0 31.35 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.032598 TCCCTGAAGATGGAATAAGTTTCTT 57.967 36.000 0.00 0.00 0.00 2.52
46 49 0.254747 TTTCTTCATGCCTACCCCCG 59.745 55.000 0.00 0.00 0.00 5.73
47 50 2.203209 CTTCATGCCTACCCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
48 51 2.690881 TTCATGCCTACCCCCGCT 60.691 61.111 0.00 0.00 0.00 5.52
98 101 0.529773 GCGTGTGGAAGTGTGTCTCA 60.530 55.000 0.00 0.00 0.00 3.27
101 104 2.481276 CGTGTGGAAGTGTGTCTCAAGA 60.481 50.000 0.00 0.00 0.00 3.02
133 136 2.338500 GATTCGGTCAGTGGTTGTCTC 58.662 52.381 0.00 0.00 0.00 3.36
142 145 0.608640 GTGGTTGTCTCCGATGGACT 59.391 55.000 0.00 0.00 35.04 3.85
199 1563 5.870706 TGTGTGTCTACATGTTAAATCCCA 58.129 37.500 2.30 0.00 39.39 4.37
291 2010 0.450983 CGACTTCCCGACTGTCTACC 59.549 60.000 6.21 0.00 0.00 3.18
309 2028 0.821711 CCAGAACCAAGTTTGCCCGA 60.822 55.000 0.00 0.00 0.00 5.14
317 2036 1.086696 AAGTTTGCCCGATGTCGATG 58.913 50.000 3.62 0.00 43.02 3.84
327 2046 2.158559 CGATGTCGATGAGGGAGAGAT 58.841 52.381 0.00 0.00 43.02 2.75
370 2089 2.094417 GCTCGTTCCAATGCTTGTAGTC 59.906 50.000 0.00 0.00 0.00 2.59
379 2098 0.312729 TGCTTGTAGTCGTCGCTTGA 59.687 50.000 0.00 0.00 0.00 3.02
459 2378 8.799367 GGGAATTAAGTTACAAGTTATGGTGTT 58.201 33.333 0.00 0.00 0.00 3.32
476 2395 4.039004 TGGTGTTGAGAATTGGTTGGAATG 59.961 41.667 0.00 0.00 0.00 2.67
480 2399 6.206634 GTGTTGAGAATTGGTTGGAATGTAGA 59.793 38.462 0.00 0.00 0.00 2.59
481 2400 6.775142 TGTTGAGAATTGGTTGGAATGTAGAA 59.225 34.615 0.00 0.00 0.00 2.10
485 2404 3.410631 TTGGTTGGAATGTAGAAGCGA 57.589 42.857 0.00 0.00 0.00 4.93
497 2416 1.985116 GAAGCGAGGAGGACCCACT 60.985 63.158 0.00 0.00 37.41 4.00
513 2432 3.581332 ACCCACTAGTGAAAATCGAAGGA 59.419 43.478 24.68 0.00 0.00 3.36
530 2453 7.715265 TCGAAGGAATTATTAAGAGATGTGC 57.285 36.000 0.00 0.00 0.00 4.57
543 2486 1.831106 AGATGTGCCCGTAGAACATGA 59.169 47.619 0.00 0.00 34.74 3.07
547 2490 0.463654 TGCCCGTAGAACATGATGCC 60.464 55.000 0.00 0.00 0.00 4.40
557 2500 0.839277 ACATGATGCCGGATTCTCCA 59.161 50.000 5.05 0.00 35.91 3.86
578 2521 0.783579 CGCAAACAAAGAAATGGGCG 59.216 50.000 0.00 0.00 34.78 6.13
710 2682 8.681486 AATCTGTTTCATTCGGATATTGATCA 57.319 30.769 0.00 0.00 33.27 2.92
745 2717 6.484818 ACATAATTTACGCGTTACTGGTTT 57.515 33.333 20.78 4.83 0.00 3.27
750 2722 2.385091 CGCGTTACTGGTTTCCGGG 61.385 63.158 0.00 0.00 33.40 5.73
768 2740 5.996644 TCCGGGTGAGTATGTTTTTCATAT 58.003 37.500 0.00 0.00 40.54 1.78
850 3062 1.201965 GCAGAGTGCGCTTTCACATAC 60.202 52.381 9.73 0.00 39.35 2.39
851 3063 2.341257 CAGAGTGCGCTTTCACATACT 58.659 47.619 9.73 0.00 39.35 2.12
852 3064 2.346847 CAGAGTGCGCTTTCACATACTC 59.653 50.000 9.73 10.61 39.35 2.59
853 3065 1.321743 GAGTGCGCTTTCACATACTCG 59.678 52.381 9.73 0.00 39.35 4.18
854 3066 1.068474 GTGCGCTTTCACATACTCGT 58.932 50.000 9.73 0.00 36.97 4.18
855 3067 2.094906 AGTGCGCTTTCACATACTCGTA 60.095 45.455 9.73 0.00 39.35 3.43
898 3110 2.035832 CACGAGAGGCCAAACCATTTTT 59.964 45.455 5.01 0.00 43.14 1.94
1068 4350 3.324930 CTCCTCCTGCTGCCCACA 61.325 66.667 0.00 0.00 0.00 4.17
1183 4465 2.955881 CGGCCCTTCCTCGGTTTCT 61.956 63.158 0.00 0.00 0.00 2.52
1736 5076 1.528129 GCTTGTGCCTGCTTCTACTT 58.472 50.000 0.00 0.00 0.00 2.24
1788 5128 1.630369 CTTGACACCAGGAGGATGGAA 59.370 52.381 0.00 0.00 43.57 3.53
1845 5185 0.171007 CACCGATTGCCATTGTGGAC 59.829 55.000 0.00 0.00 40.96 4.02
1970 5310 1.489649 CCAGTGGCAGATGGAGAAGAT 59.510 52.381 12.33 0.00 39.02 2.40
2266 5607 3.004002 TCCGTACCTGCATAGTTATCACG 59.996 47.826 0.00 0.00 0.00 4.35
2268 5609 4.023792 CCGTACCTGCATAGTTATCACGTA 60.024 45.833 0.00 0.00 0.00 3.57
2269 5610 5.335426 CCGTACCTGCATAGTTATCACGTAT 60.335 44.000 0.00 0.00 0.00 3.06
2324 5829 8.685838 TTGTAGTAGGCAAGTCTTGTTTAAAT 57.314 30.769 14.03 0.60 0.00 1.40
2379 5885 8.504815 GGAAAACTAACTTAAATCAGGAGTGAC 58.495 37.037 0.00 0.00 34.75 3.67
2448 5954 6.294473 GTCTTCCACACCATAGATCATTGAT 58.706 40.000 0.00 0.00 0.00 2.57
2549 6055 7.201947 GCAAAGATAAAGGGATTGCCTAATCTT 60.202 37.037 20.23 20.23 41.92 2.40
2562 6068 3.879892 GCCTAATCTTGGGAAGCAGTAAG 59.120 47.826 0.00 0.00 0.00 2.34
2576 6082 6.400727 GGAAGCAGTAAGTGTGTAAATGTACG 60.401 42.308 0.00 0.00 32.40 3.67
2691 6199 1.522092 CTCCTGCGGATGTAGGCAA 59.478 57.895 0.00 0.00 46.67 4.52
2771 6279 5.472137 GCTTTTCCTTGGTAGATTGTGTGTA 59.528 40.000 0.00 0.00 0.00 2.90
3029 6537 3.872431 ATGTAGTAGGAGGGCGCC 58.128 61.111 21.18 21.18 0.00 6.53
3030 6538 1.075525 ATGTAGTAGGAGGGCGCCA 60.076 57.895 30.85 3.35 0.00 5.69
3031 6539 1.115930 ATGTAGTAGGAGGGCGCCAG 61.116 60.000 30.85 0.00 0.00 4.85
3032 6540 1.455217 GTAGTAGGAGGGCGCCAGA 60.455 63.158 30.85 4.64 0.00 3.86
3033 6541 1.041447 GTAGTAGGAGGGCGCCAGAA 61.041 60.000 30.85 5.32 0.00 3.02
3034 6542 0.755698 TAGTAGGAGGGCGCCAGAAG 60.756 60.000 30.85 0.00 0.00 2.85
3035 6543 2.038975 TAGGAGGGCGCCAGAAGT 59.961 61.111 30.85 10.88 0.00 3.01
3036 6544 1.041447 GTAGGAGGGCGCCAGAAGTA 61.041 60.000 30.85 9.76 0.00 2.24
3037 6545 0.755698 TAGGAGGGCGCCAGAAGTAG 60.756 60.000 30.85 0.00 0.00 2.57
3038 6546 2.501610 GAGGGCGCCAGAAGTAGG 59.498 66.667 30.85 0.00 0.00 3.18
3039 6547 2.038975 AGGGCGCCAGAAGTAGGA 59.961 61.111 30.85 0.00 0.00 2.94
3040 6548 2.022240 GAGGGCGCCAGAAGTAGGAG 62.022 65.000 30.85 0.00 0.00 3.69
3041 6549 2.501610 GGCGCCAGAAGTAGGAGG 59.498 66.667 24.80 0.00 0.00 4.30
3042 6550 2.202946 GCGCCAGAAGTAGGAGGC 60.203 66.667 0.00 0.00 43.61 4.70
3043 6551 2.501610 CGCCAGAAGTAGGAGGCC 59.498 66.667 0.00 0.00 44.18 5.19
3044 6552 2.911928 GCCAGAAGTAGGAGGCCC 59.088 66.667 0.00 0.00 41.25 5.80
3045 6553 3.095347 GCCAGAAGTAGGAGGCCCG 62.095 68.421 0.00 0.00 41.25 6.13
3046 6554 1.381327 CCAGAAGTAGGAGGCCCGA 60.381 63.158 0.00 0.00 37.58 5.14
3047 6555 0.760945 CCAGAAGTAGGAGGCCCGAT 60.761 60.000 0.00 0.00 37.58 4.18
3048 6556 0.676736 CAGAAGTAGGAGGCCCGATC 59.323 60.000 0.00 0.00 37.58 3.69
3049 6557 0.824182 AGAAGTAGGAGGCCCGATCG 60.824 60.000 8.51 8.51 37.58 3.69
3050 6558 1.807495 GAAGTAGGAGGCCCGATCGG 61.807 65.000 27.65 27.65 37.58 4.18
3075 6583 4.569761 AAAAAGAGAAAGAAACGAGGCC 57.430 40.909 0.00 0.00 0.00 5.19
3076 6584 2.186532 AAGAGAAAGAAACGAGGCCC 57.813 50.000 0.00 0.00 0.00 5.80
3077 6585 1.056660 AGAGAAAGAAACGAGGCCCA 58.943 50.000 0.00 0.00 0.00 5.36
3078 6586 1.420138 AGAGAAAGAAACGAGGCCCAA 59.580 47.619 0.00 0.00 0.00 4.12
3079 6587 2.040412 AGAGAAAGAAACGAGGCCCAAT 59.960 45.455 0.00 0.00 0.00 3.16
3080 6588 2.420372 GAGAAAGAAACGAGGCCCAATC 59.580 50.000 0.00 0.00 0.00 2.67
3081 6589 1.130561 GAAAGAAACGAGGCCCAATCG 59.869 52.381 11.05 11.05 45.54 3.34
3082 6590 0.676782 AAGAAACGAGGCCCAATCGG 60.677 55.000 16.29 0.35 44.36 4.18
3091 6599 3.661911 CCCAATCGGCAACAACGA 58.338 55.556 0.00 0.00 45.19 3.85
3092 6600 2.179764 CCCAATCGGCAACAACGAT 58.820 52.632 0.00 0.00 44.92 3.73
3093 6601 0.179166 CCCAATCGGCAACAACGATG 60.179 55.000 0.80 0.00 44.92 3.84
3094 6602 0.521291 CCAATCGGCAACAACGATGT 59.479 50.000 0.80 0.00 44.92 3.06
3095 6603 1.465689 CCAATCGGCAACAACGATGTC 60.466 52.381 0.00 0.00 44.92 3.06
3096 6604 0.802494 AATCGGCAACAACGATGTCC 59.198 50.000 0.00 0.00 44.92 4.02
3097 6605 1.358725 ATCGGCAACAACGATGTCCG 61.359 55.000 16.67 16.67 44.23 4.79
3098 6606 2.024868 CGGCAACAACGATGTCCGA 61.025 57.895 17.56 0.00 45.14 4.55
3099 6607 1.358725 CGGCAACAACGATGTCCGAT 61.359 55.000 17.56 0.00 45.14 4.18
3100 6608 0.373716 GGCAACAACGATGTCCGATC 59.626 55.000 0.00 0.00 39.40 3.69
3101 6609 0.373716 GCAACAACGATGTCCGATCC 59.626 55.000 0.00 0.00 39.40 3.36
3102 6610 1.006832 CAACAACGATGTCCGATCCC 58.993 55.000 0.00 0.00 39.40 3.85
3103 6611 0.611200 AACAACGATGTCCGATCCCA 59.389 50.000 0.00 0.00 39.40 4.37
3104 6612 0.175760 ACAACGATGTCCGATCCCAG 59.824 55.000 0.00 0.00 41.76 4.45
3105 6613 1.144057 AACGATGTCCGATCCCAGC 59.856 57.895 0.00 0.00 41.76 4.85
3106 6614 2.355126 CGATGTCCGATCCCAGCG 60.355 66.667 0.00 0.00 41.76 5.18
3132 6640 3.521605 TCGCGAGATCGTTCCCAT 58.478 55.556 3.71 0.00 42.22 4.00
3133 6641 1.065764 TCGCGAGATCGTTCCCATG 59.934 57.895 3.71 0.00 42.22 3.66
3134 6642 1.065764 CGCGAGATCGTTCCCATGA 59.934 57.895 0.00 0.00 42.22 3.07
3135 6643 0.527600 CGCGAGATCGTTCCCATGAA 60.528 55.000 0.00 0.00 42.22 2.57
3136 6644 1.651987 GCGAGATCGTTCCCATGAAA 58.348 50.000 3.94 0.00 42.22 2.69
3137 6645 1.327764 GCGAGATCGTTCCCATGAAAC 59.672 52.381 3.94 0.00 42.22 2.78
3138 6646 2.616960 CGAGATCGTTCCCATGAAACA 58.383 47.619 0.00 0.00 30.79 2.83
3139 6647 2.604914 CGAGATCGTTCCCATGAAACAG 59.395 50.000 0.00 0.00 30.79 3.16
3140 6648 2.352960 GAGATCGTTCCCATGAAACAGC 59.647 50.000 0.00 0.00 30.79 4.40
3141 6649 1.062587 GATCGTTCCCATGAAACAGCG 59.937 52.381 0.00 0.00 30.79 5.18
3142 6650 0.034198 TCGTTCCCATGAAACAGCGA 59.966 50.000 0.00 0.00 30.79 4.93
3143 6651 0.443869 CGTTCCCATGAAACAGCGAG 59.556 55.000 0.00 0.00 30.79 5.03
3144 6652 1.808411 GTTCCCATGAAACAGCGAGA 58.192 50.000 0.00 0.00 30.79 4.04
3145 6653 1.734465 GTTCCCATGAAACAGCGAGAG 59.266 52.381 0.00 0.00 30.79 3.20
3146 6654 1.266178 TCCCATGAAACAGCGAGAGA 58.734 50.000 0.00 0.00 0.00 3.10
3147 6655 1.833630 TCCCATGAAACAGCGAGAGAT 59.166 47.619 0.00 0.00 0.00 2.75
3148 6656 2.159043 TCCCATGAAACAGCGAGAGATC 60.159 50.000 0.00 0.00 0.00 2.75
3149 6657 2.208431 CCATGAAACAGCGAGAGATCC 58.792 52.381 0.00 0.00 0.00 3.36
3150 6658 2.158986 CCATGAAACAGCGAGAGATCCT 60.159 50.000 0.00 0.00 0.00 3.24
3151 6659 2.949451 TGAAACAGCGAGAGATCCTC 57.051 50.000 0.00 0.00 38.55 3.71
3152 6660 2.451490 TGAAACAGCGAGAGATCCTCT 58.549 47.619 8.86 0.00 44.28 3.69
3153 6661 2.165234 TGAAACAGCGAGAGATCCTCTG 59.835 50.000 0.64 4.96 41.35 3.35
3154 6662 1.110442 AACAGCGAGAGATCCTCTGG 58.890 55.000 0.64 1.53 41.35 3.86
3155 6663 0.257328 ACAGCGAGAGATCCTCTGGA 59.743 55.000 9.64 0.00 41.35 3.86
3156 6664 1.341482 ACAGCGAGAGATCCTCTGGAA 60.341 52.381 9.64 0.00 41.35 3.53
3157 6665 1.753649 CAGCGAGAGATCCTCTGGAAA 59.246 52.381 9.64 0.00 41.35 3.13
3158 6666 2.167281 CAGCGAGAGATCCTCTGGAAAA 59.833 50.000 9.64 0.00 41.35 2.29
3159 6667 2.834549 AGCGAGAGATCCTCTGGAAAAA 59.165 45.455 9.64 0.00 41.35 1.94
3184 6692 8.798859 AAAGAAAGATAGCAAATTAGAGAGCA 57.201 30.769 0.00 0.00 0.00 4.26
3185 6693 8.798859 AAGAAAGATAGCAAATTAGAGAGCAA 57.201 30.769 0.00 0.00 0.00 3.91
3186 6694 8.977267 AGAAAGATAGCAAATTAGAGAGCAAT 57.023 30.769 0.00 0.00 0.00 3.56
3187 6695 9.054922 AGAAAGATAGCAAATTAGAGAGCAATC 57.945 33.333 0.00 0.00 0.00 2.67
3188 6696 8.743085 AAAGATAGCAAATTAGAGAGCAATCA 57.257 30.769 0.00 0.00 0.00 2.57
3189 6697 7.966246 AGATAGCAAATTAGAGAGCAATCAG 57.034 36.000 0.00 0.00 0.00 2.90
3190 6698 4.897025 AGCAAATTAGAGAGCAATCAGC 57.103 40.909 0.00 0.00 46.19 4.26
3199 6707 3.869272 GCAATCAGCGCCTGGACG 61.869 66.667 2.29 1.52 31.51 4.79
3200 6708 2.434884 CAATCAGCGCCTGGACGT 60.435 61.111 2.29 0.00 34.88 4.34
3201 6709 2.434884 AATCAGCGCCTGGACGTG 60.435 61.111 2.29 0.00 34.88 4.49
3202 6710 2.942796 AATCAGCGCCTGGACGTGA 61.943 57.895 2.29 0.00 34.88 4.35
3203 6711 2.244117 AATCAGCGCCTGGACGTGAT 62.244 55.000 2.29 1.26 36.25 3.06
3204 6712 2.244117 ATCAGCGCCTGGACGTGATT 62.244 55.000 2.29 0.00 33.26 2.57
3205 6713 2.125512 AGCGCCTGGACGTGATTC 60.126 61.111 2.29 0.00 34.88 2.52
3206 6714 3.195698 GCGCCTGGACGTGATTCC 61.196 66.667 0.00 0.00 36.03 3.01
3207 6715 2.511600 CGCCTGGACGTGATTCCC 60.512 66.667 0.00 0.00 34.33 3.97
3208 6716 2.990479 GCCTGGACGTGATTCCCT 59.010 61.111 0.00 0.00 34.33 4.20
3209 6717 1.299976 GCCTGGACGTGATTCCCTT 59.700 57.895 0.00 0.00 34.33 3.95
3210 6718 0.744771 GCCTGGACGTGATTCCCTTC 60.745 60.000 0.00 0.00 34.33 3.46
3211 6719 0.107654 CCTGGACGTGATTCCCTTCC 60.108 60.000 0.00 0.00 34.33 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.161450 GAGCGGGGGTAGGCATGA 61.161 66.667 0.00 0.00 0.00 3.07
47 50 1.949847 CTAGACACACCGCCAGGGAG 61.950 65.000 0.00 0.00 43.47 4.30
48 51 1.982395 CTAGACACACCGCCAGGGA 60.982 63.158 0.00 0.00 43.47 4.20
98 101 2.697751 CCGAATCCTGTGAGATCCTCTT 59.302 50.000 0.00 0.00 0.00 2.85
101 104 2.035632 GACCGAATCCTGTGAGATCCT 58.964 52.381 0.00 0.00 0.00 3.24
109 112 1.056660 AACCACTGACCGAATCCTGT 58.943 50.000 0.00 0.00 0.00 4.00
133 136 0.933097 CATCGAAGCAAGTCCATCGG 59.067 55.000 0.00 0.00 36.05 4.18
142 145 1.270094 ACGAAGACCACATCGAAGCAA 60.270 47.619 1.84 0.00 39.16 3.91
291 2010 1.068333 CATCGGGCAAACTTGGTTCTG 60.068 52.381 0.00 0.00 0.00 3.02
309 2028 3.235750 TCATCTCTCCCTCATCGACAT 57.764 47.619 0.00 0.00 0.00 3.06
317 2036 0.965439 CCCGTCATCATCTCTCCCTC 59.035 60.000 0.00 0.00 0.00 4.30
370 2089 2.384899 TCGTAGATCATCAAGCGACG 57.615 50.000 0.00 0.00 42.68 5.12
452 2371 3.843422 TCCAACCAATTCTCAACACCAT 58.157 40.909 0.00 0.00 0.00 3.55
459 2378 5.415701 GCTTCTACATTCCAACCAATTCTCA 59.584 40.000 0.00 0.00 0.00 3.27
476 2395 0.683504 TGGGTCCTCCTCGCTTCTAC 60.684 60.000 0.00 0.00 36.20 2.59
480 2399 0.684805 CTAGTGGGTCCTCCTCGCTT 60.685 60.000 0.00 0.00 36.20 4.68
481 2400 1.076632 CTAGTGGGTCCTCCTCGCT 60.077 63.158 0.00 0.00 36.20 4.93
485 2404 2.715763 TTTCACTAGTGGGTCCTCCT 57.284 50.000 22.48 0.00 36.20 3.69
513 2432 7.062749 TCTACGGGCACATCTCTTAATAATT 57.937 36.000 0.00 0.00 0.00 1.40
530 2453 0.880278 CCGGCATCATGTTCTACGGG 60.880 60.000 0.00 0.54 36.45 5.28
557 2500 2.209273 GCCCATTTCTTTGTTTGCGTT 58.791 42.857 0.00 0.00 0.00 4.84
578 2521 2.099427 AGAGACGGATTCCTTTCTACGC 59.901 50.000 0.30 0.00 0.00 4.42
710 2682 6.081693 GCGTAAATTATGTCGAACCAAAACT 58.918 36.000 0.00 0.00 0.00 2.66
745 2717 3.773418 TGAAAAACATACTCACCCGGA 57.227 42.857 0.73 0.00 0.00 5.14
850 3062 3.869832 TCAGACGTGATTACTCCTACGAG 59.130 47.826 0.00 0.00 42.32 4.18
851 3063 3.620374 GTCAGACGTGATTACTCCTACGA 59.380 47.826 0.00 0.00 39.61 3.43
852 3064 3.622163 AGTCAGACGTGATTACTCCTACG 59.378 47.826 0.00 0.00 41.86 3.51
853 3065 5.564048 AAGTCAGACGTGATTACTCCTAC 57.436 43.478 0.00 0.00 34.36 3.18
854 3066 5.708697 TGAAAGTCAGACGTGATTACTCCTA 59.291 40.000 0.00 0.00 34.36 2.94
855 3067 4.523173 TGAAAGTCAGACGTGATTACTCCT 59.477 41.667 0.00 0.00 34.36 3.69
898 3110 2.238521 GGAAGGTCAAATGTCCAGCAA 58.761 47.619 0.00 0.00 0.00 3.91
900 3112 1.909700 TGGAAGGTCAAATGTCCAGC 58.090 50.000 0.00 0.00 35.22 4.85
1179 4461 1.757682 AGCCGTTGTGGTTGAAGAAA 58.242 45.000 0.00 0.00 41.21 2.52
1183 4465 0.394488 TGGAAGCCGTTGTGGTTGAA 60.394 50.000 0.00 0.00 41.21 2.69
1246 4528 2.886730 AAATCCGCGGCGAGGGAAAT 62.887 55.000 28.99 13.05 35.60 2.17
1373 4658 2.089349 GCGAGCTCCGTGAAGACAC 61.089 63.158 8.47 0.00 42.88 3.67
1736 5076 1.538629 TGCCTCCAGTCCATGACCA 60.539 57.895 0.00 0.00 32.18 4.02
1788 5128 0.181350 GGAGGTCGGCAATGGAGAAT 59.819 55.000 0.00 0.00 0.00 2.40
1845 5185 4.785453 GGTCTGCCTTCCCCAGCG 62.785 72.222 0.00 0.00 0.00 5.18
1970 5310 1.221635 ACCGGATTCCAATGGGATCA 58.778 50.000 21.35 0.00 44.48 2.92
2266 5607 8.512138 ACTATCAAGCACCAAACAAGTTAATAC 58.488 33.333 0.00 0.00 0.00 1.89
2268 5609 7.524717 ACTATCAAGCACCAAACAAGTTAAT 57.475 32.000 0.00 0.00 0.00 1.40
2269 5610 6.952773 ACTATCAAGCACCAAACAAGTTAA 57.047 33.333 0.00 0.00 0.00 2.01
2324 5829 4.518970 GCTCAGGAGAAATAAACACAACCA 59.481 41.667 0.00 0.00 0.00 3.67
2379 5885 4.707030 TCAAGATGGCAAGCAAATACTG 57.293 40.909 0.00 0.00 0.00 2.74
2462 5968 5.415701 GCAATTCCACTTGGTCTCTAAATGA 59.584 40.000 0.00 0.00 36.34 2.57
2467 5973 3.582647 TCTGCAATTCCACTTGGTCTCTA 59.417 43.478 0.00 0.00 36.34 2.43
2549 6055 4.425180 TTTACACACTTACTGCTTCCCA 57.575 40.909 0.00 0.00 0.00 4.37
2562 6068 6.327934 ACCTGAGTATCGTACATTTACACAC 58.672 40.000 0.00 0.00 38.61 3.82
2576 6082 9.978044 ACGTAAAAGGATATAAACCTGAGTATC 57.022 33.333 0.00 0.00 37.85 2.24
2691 6199 2.930950 TGTTTGCTAGGTTCAGCTGTT 58.069 42.857 14.67 0.92 42.30 3.16
3012 6520 1.075525 TGGCGCCCTCCTACTACAT 60.076 57.895 26.77 0.00 0.00 2.29
3013 6521 1.756950 CTGGCGCCCTCCTACTACA 60.757 63.158 26.77 0.00 0.00 2.74
3014 6522 1.041447 TTCTGGCGCCCTCCTACTAC 61.041 60.000 26.77 0.00 0.00 2.73
3015 6523 0.755698 CTTCTGGCGCCCTCCTACTA 60.756 60.000 26.77 0.19 0.00 1.82
3016 6524 2.038975 TTCTGGCGCCCTCCTACT 59.961 61.111 26.77 0.00 0.00 2.57
3017 6525 1.041447 TACTTCTGGCGCCCTCCTAC 61.041 60.000 26.77 0.00 0.00 3.18
3018 6526 0.755698 CTACTTCTGGCGCCCTCCTA 60.756 60.000 26.77 2.93 0.00 2.94
3019 6527 2.038975 TACTTCTGGCGCCCTCCT 59.961 61.111 26.77 4.86 0.00 3.69
3020 6528 2.501610 CTACTTCTGGCGCCCTCC 59.498 66.667 26.77 0.00 0.00 4.30
3021 6529 2.022240 CTCCTACTTCTGGCGCCCTC 62.022 65.000 26.77 0.00 0.00 4.30
3022 6530 2.038975 TCCTACTTCTGGCGCCCT 59.961 61.111 26.77 3.25 0.00 5.19
3023 6531 2.501610 CTCCTACTTCTGGCGCCC 59.498 66.667 26.77 6.44 0.00 6.13
3024 6532 2.501610 CCTCCTACTTCTGGCGCC 59.498 66.667 22.73 22.73 0.00 6.53
3025 6533 2.202946 GCCTCCTACTTCTGGCGC 60.203 66.667 0.00 0.00 35.79 6.53
3026 6534 2.501610 GGCCTCCTACTTCTGGCG 59.498 66.667 0.00 0.00 45.75 5.69
3027 6535 2.911928 GGGCCTCCTACTTCTGGC 59.088 66.667 0.84 0.00 44.22 4.85
3028 6536 0.760945 ATCGGGCCTCCTACTTCTGG 60.761 60.000 0.84 0.00 0.00 3.86
3029 6537 0.676736 GATCGGGCCTCCTACTTCTG 59.323 60.000 0.84 0.00 0.00 3.02
3030 6538 0.824182 CGATCGGGCCTCCTACTTCT 60.824 60.000 7.38 0.00 0.00 2.85
3031 6539 1.660917 CGATCGGGCCTCCTACTTC 59.339 63.158 7.38 0.00 0.00 3.01
3032 6540 1.833049 CCGATCGGGCCTCCTACTT 60.833 63.158 26.95 0.00 0.00 2.24
3033 6541 2.203509 CCGATCGGGCCTCCTACT 60.204 66.667 26.95 0.00 0.00 2.57
3054 6562 3.318275 GGGCCTCGTTTCTTTCTCTTTTT 59.682 43.478 0.84 0.00 0.00 1.94
3055 6563 2.885266 GGGCCTCGTTTCTTTCTCTTTT 59.115 45.455 0.84 0.00 0.00 2.27
3056 6564 2.158667 TGGGCCTCGTTTCTTTCTCTTT 60.159 45.455 4.53 0.00 0.00 2.52
3057 6565 1.420138 TGGGCCTCGTTTCTTTCTCTT 59.580 47.619 4.53 0.00 0.00 2.85
3058 6566 1.056660 TGGGCCTCGTTTCTTTCTCT 58.943 50.000 4.53 0.00 0.00 3.10
3059 6567 1.892209 TTGGGCCTCGTTTCTTTCTC 58.108 50.000 4.53 0.00 0.00 2.87
3060 6568 2.437413 GATTGGGCCTCGTTTCTTTCT 58.563 47.619 4.53 0.00 0.00 2.52
3061 6569 1.130561 CGATTGGGCCTCGTTTCTTTC 59.869 52.381 4.53 0.00 0.00 2.62
3062 6570 1.165270 CGATTGGGCCTCGTTTCTTT 58.835 50.000 4.53 0.00 0.00 2.52
3063 6571 0.676782 CCGATTGGGCCTCGTTTCTT 60.677 55.000 13.34 0.00 34.36 2.52
3064 6572 1.078426 CCGATTGGGCCTCGTTTCT 60.078 57.895 13.34 0.00 34.36 2.52
3065 6573 3.497879 CCGATTGGGCCTCGTTTC 58.502 61.111 13.34 0.00 34.36 2.78
3074 6582 0.179166 CATCGTTGTTGCCGATTGGG 60.179 55.000 0.00 0.00 42.75 4.12
3075 6583 0.521291 ACATCGTTGTTGCCGATTGG 59.479 50.000 0.00 0.00 42.75 3.16
3076 6584 1.465689 GGACATCGTTGTTGCCGATTG 60.466 52.381 0.00 0.00 42.75 2.67
3077 6585 0.802494 GGACATCGTTGTTGCCGATT 59.198 50.000 0.00 0.00 42.75 3.34
3078 6586 1.358725 CGGACATCGTTGTTGCCGAT 61.359 55.000 17.38 0.00 42.75 4.18
3079 6587 2.024868 CGGACATCGTTGTTGCCGA 61.025 57.895 17.38 0.00 42.75 5.54
3080 6588 1.358725 ATCGGACATCGTTGTTGCCG 61.359 55.000 16.57 16.57 41.95 5.69
3081 6589 0.373716 GATCGGACATCGTTGTTGCC 59.626 55.000 0.00 0.00 40.32 4.52
3082 6590 0.373716 GGATCGGACATCGTTGTTGC 59.626 55.000 0.00 0.00 40.32 4.17
3083 6591 1.006832 GGGATCGGACATCGTTGTTG 58.993 55.000 0.00 0.00 40.32 3.33
3084 6592 0.611200 TGGGATCGGACATCGTTGTT 59.389 50.000 0.00 0.00 40.32 2.83
3085 6593 0.175760 CTGGGATCGGACATCGTTGT 59.824 55.000 0.00 0.00 40.32 3.32
3086 6594 1.154205 GCTGGGATCGGACATCGTTG 61.154 60.000 0.00 0.00 40.32 4.10
3087 6595 1.144057 GCTGGGATCGGACATCGTT 59.856 57.895 0.00 0.00 40.32 3.85
3088 6596 2.815308 GCTGGGATCGGACATCGT 59.185 61.111 0.00 0.00 40.32 3.73
3089 6597 2.355126 CGCTGGGATCGGACATCG 60.355 66.667 0.00 0.00 40.90 3.84
3106 6614 4.654412 ATCTCGCGATCGCTGGCC 62.654 66.667 34.69 9.03 39.32 5.36
3107 6615 3.102668 GATCTCGCGATCGCTGGC 61.103 66.667 34.69 18.90 36.96 4.85
3113 6621 0.039074 ATGGGAACGATCTCGCGATC 60.039 55.000 10.36 4.05 44.43 3.69
3114 6622 0.319040 CATGGGAACGATCTCGCGAT 60.319 55.000 10.36 0.00 44.43 4.58
3115 6623 1.065764 CATGGGAACGATCTCGCGA 59.934 57.895 9.26 9.26 44.43 5.87
3116 6624 0.527600 TTCATGGGAACGATCTCGCG 60.528 55.000 0.00 0.00 44.43 5.87
3117 6625 1.327764 GTTTCATGGGAACGATCTCGC 59.672 52.381 0.00 0.00 44.43 5.03
3118 6626 2.604914 CTGTTTCATGGGAACGATCTCG 59.395 50.000 0.00 0.00 46.33 4.04
3119 6627 2.352960 GCTGTTTCATGGGAACGATCTC 59.647 50.000 0.00 0.00 31.35 2.75
3120 6628 2.359900 GCTGTTTCATGGGAACGATCT 58.640 47.619 0.00 0.00 31.35 2.75
3121 6629 1.062587 CGCTGTTTCATGGGAACGATC 59.937 52.381 0.00 0.00 31.35 3.69
3122 6630 1.086696 CGCTGTTTCATGGGAACGAT 58.913 50.000 0.00 0.00 31.35 3.73
3123 6631 0.034198 TCGCTGTTTCATGGGAACGA 59.966 50.000 0.00 0.00 31.35 3.85
3124 6632 0.443869 CTCGCTGTTTCATGGGAACG 59.556 55.000 0.00 0.00 31.35 3.95
3125 6633 1.734465 CTCTCGCTGTTTCATGGGAAC 59.266 52.381 0.00 0.00 31.35 3.62
3126 6634 1.623311 TCTCTCGCTGTTTCATGGGAA 59.377 47.619 0.00 0.00 0.00 3.97
3127 6635 1.266178 TCTCTCGCTGTTTCATGGGA 58.734 50.000 0.00 0.00 0.00 4.37
3128 6636 2.208431 GATCTCTCGCTGTTTCATGGG 58.792 52.381 0.00 0.00 0.00 4.00
3129 6637 2.158986 AGGATCTCTCGCTGTTTCATGG 60.159 50.000 0.00 0.00 0.00 3.66
3130 6638 3.122297 GAGGATCTCTCGCTGTTTCATG 58.878 50.000 0.00 0.00 32.18 3.07
3131 6639 3.451141 GAGGATCTCTCGCTGTTTCAT 57.549 47.619 0.00 0.00 32.18 2.57
3132 6640 2.949451 GAGGATCTCTCGCTGTTTCA 57.051 50.000 0.00 0.00 32.18 2.69
3158 6666 9.236006 TGCTCTCTAATTTGCTATCTTTCTTTT 57.764 29.630 0.00 0.00 0.00 2.27
3159 6667 8.798859 TGCTCTCTAATTTGCTATCTTTCTTT 57.201 30.769 0.00 0.00 0.00 2.52
3160 6668 8.798859 TTGCTCTCTAATTTGCTATCTTTCTT 57.201 30.769 0.00 0.00 0.00 2.52
3161 6669 8.977267 ATTGCTCTCTAATTTGCTATCTTTCT 57.023 30.769 0.00 0.00 0.00 2.52
3162 6670 8.834465 TGATTGCTCTCTAATTTGCTATCTTTC 58.166 33.333 0.00 0.00 38.08 2.62
3163 6671 8.743085 TGATTGCTCTCTAATTTGCTATCTTT 57.257 30.769 0.00 0.00 38.08 2.52
3164 6672 7.041235 GCTGATTGCTCTCTAATTTGCTATCTT 60.041 37.037 0.00 0.00 38.08 2.40
3165 6673 6.427547 GCTGATTGCTCTCTAATTTGCTATCT 59.572 38.462 0.00 0.00 38.08 1.98
3166 6674 6.601264 GCTGATTGCTCTCTAATTTGCTATC 58.399 40.000 0.00 0.00 37.86 2.08
3167 6675 5.178996 CGCTGATTGCTCTCTAATTTGCTAT 59.821 40.000 0.00 0.00 40.11 2.97
3168 6676 4.509230 CGCTGATTGCTCTCTAATTTGCTA 59.491 41.667 0.00 0.00 40.11 3.49
3169 6677 3.311871 CGCTGATTGCTCTCTAATTTGCT 59.688 43.478 0.00 0.00 40.11 3.91
3170 6678 3.615614 CGCTGATTGCTCTCTAATTTGC 58.384 45.455 0.00 0.00 40.11 3.68
3171 6679 3.547613 GGCGCTGATTGCTCTCTAATTTG 60.548 47.826 7.64 0.00 40.11 2.32
3172 6680 2.615912 GGCGCTGATTGCTCTCTAATTT 59.384 45.455 7.64 0.00 40.11 1.82
3173 6681 2.158842 AGGCGCTGATTGCTCTCTAATT 60.159 45.455 7.64 0.00 40.11 1.40
3174 6682 1.415659 AGGCGCTGATTGCTCTCTAAT 59.584 47.619 7.64 0.00 40.11 1.73
3175 6683 0.826715 AGGCGCTGATTGCTCTCTAA 59.173 50.000 7.64 0.00 40.11 2.10
3176 6684 0.103755 CAGGCGCTGATTGCTCTCTA 59.896 55.000 7.64 0.00 40.11 2.43
3177 6685 1.153409 CAGGCGCTGATTGCTCTCT 60.153 57.895 7.64 0.00 40.11 3.10
3178 6686 2.178890 CCAGGCGCTGATTGCTCTC 61.179 63.158 7.64 0.00 40.11 3.20
3179 6687 2.124819 CCAGGCGCTGATTGCTCT 60.125 61.111 7.64 0.00 40.11 4.09
3180 6688 2.124983 TCCAGGCGCTGATTGCTC 60.125 61.111 7.64 0.00 40.11 4.26
3181 6689 2.437359 GTCCAGGCGCTGATTGCT 60.437 61.111 7.64 0.00 40.11 3.91
3182 6690 3.869272 CGTCCAGGCGCTGATTGC 61.869 66.667 7.64 0.00 32.44 3.56
3183 6691 2.434884 ACGTCCAGGCGCTGATTG 60.435 61.111 7.64 0.81 32.44 2.67
3184 6692 2.244117 ATCACGTCCAGGCGCTGATT 62.244 55.000 7.64 0.00 32.85 2.57
3185 6693 2.244117 AATCACGTCCAGGCGCTGAT 62.244 55.000 7.64 3.47 35.68 2.90
3186 6694 2.835701 GAATCACGTCCAGGCGCTGA 62.836 60.000 7.64 0.57 32.44 4.26
3187 6695 2.434884 AATCACGTCCAGGCGCTG 60.435 61.111 7.64 3.34 34.88 5.18
3188 6696 2.125512 GAATCACGTCCAGGCGCT 60.126 61.111 7.64 0.00 34.88 5.92
3189 6697 3.195698 GGAATCACGTCCAGGCGC 61.196 66.667 0.00 0.00 37.65 6.53
3190 6698 2.511600 GGGAATCACGTCCAGGCG 60.512 66.667 2.15 2.15 39.70 5.52
3191 6699 0.744771 GAAGGGAATCACGTCCAGGC 60.745 60.000 0.00 0.00 39.70 4.85
3192 6700 0.107654 GGAAGGGAATCACGTCCAGG 60.108 60.000 12.58 0.00 39.70 4.45
3193 6701 3.460648 GGAAGGGAATCACGTCCAG 57.539 57.895 12.58 0.00 39.70 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.