AutoCloner

Multiple sequence alignment - TraesCS2B01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G235400	chr2B	100.000	2903	0	0	1	2903	235061603	235064505	0.000000e+00	5361.0
1	TraesCS2B01G235400	chr2B	89.977	1277	65	30	1646	2903	235906872	235908104	0.000000e+00	1591.0
2	TraesCS2B01G235400	chr2B	90.482	767	28	14	889	1649	235905909	235906636	0.000000e+00	970.0
3	TraesCS2B01G235400	chr2B	88.759	427	42	3	1155	1575	383355488	383355914	4.290000e-143	518.0
4	TraesCS2B01G235400	chr2A	89.948	1940	102	40	872	2787	193584787	193586657	0.000000e+00	2416.0
5	TraesCS2B01G235400	chr2A	75.148	507	110	12	2110	2611	496668748	496669243	1.050000e-54	224.0
6	TraesCS2B01G235400	chr2A	78.711	357	58	13	2274	2626	514191718	514192060	3.770000e-54	222.0
7	TraesCS2B01G235400	chr2A	78.289	152	22	6	2479	2626	59697440	59697296	1.430000e-13	87.9
8	TraesCS2B01G235400	chr2A	96.078	51	2	0	2728	2778	193586836	193586886	1.850000e-12	84.2
9	TraesCS2B01G235400	chr2D	92.748	1117	56	12	872	1974	178696613	178697718	0.000000e+00	1591.0
10	TraesCS2B01G235400	chr2D	95.283	848	28	6	872	1709	178528880	178529725	0.000000e+00	1334.0
11	TraesCS2B01G235400	chr2D	93.061	735	40	9	2052	2783	178920843	178921569	0.000000e+00	1064.0
12	TraesCS2B01G235400	chr2D	83.522	1062	114	26	1733	2778	178697720	178698736	0.000000e+00	935.0
13	TraesCS2B01G235400	chr2D	81.992	1044	108	40	1758	2778	178534558	178535544	0.000000e+00	813.0
14	TraesCS2B01G235400	chr2D	78.580	831	107	45	1197	1977	315425059	315425868	1.560000e-132	483.0
15	TraesCS2B01G235400	chr2D	93.750	128	8	0	2776	2903	581016268	581016141	2.950000e-45	193.0
16	TraesCS2B01G235400	chr2D	88.281	128	15	0	2776	2903	565078915	565078788	1.390000e-33	154.0
17	TraesCS2B01G235400	chr5B	96.416	837	19	6	1	833	658143977	658143148	0.000000e+00	1369.0
18	TraesCS2B01G235400	chr5B	90.476	126	10	2	2775	2900	513963516	513963639	6.440000e-37	165.0
19	TraesCS2B01G235400	chr5A	95.967	843	21	10	1	833	45272401	45271562	0.000000e+00	1356.0
20	TraesCS2B01G235400	chr5A	95.823	838	24	8	1	833	582877028	582876197	0.000000e+00	1343.0
21	TraesCS2B01G235400	chr5A	75.649	308	55	12	2320	2619	366638918	366638623	5.050000e-28	135.0
22	TraesCS2B01G235400	chr1B	96.172	836	21	9	1	832	39859014	39858186	0.000000e+00	1356.0
23	TraesCS2B01G235400	chr1B	95.611	843	24	10	1	833	39864480	39863641	0.000000e+00	1339.0
24	TraesCS2B01G235400	chr1B	89.764	127	11	2	2776	2900	678909951	678910077	8.330000e-36	161.0
25	TraesCS2B01G235400	chr3A	95.943	838	21	7	1	832	177687205	177686375	0.000000e+00	1347.0
26	TraesCS2B01G235400	chr4B	95.813	836	24	7	1	832	172784024	172783196	0.000000e+00	1339.0
27	TraesCS2B01G235400	chrUn	95.492	843	25	10	1	833	381499649	381498810	0.000000e+00	1334.0
28	TraesCS2B01G235400	chrUn	84.954	432	37	11	1155	1566	27634952	27635375	2.080000e-111	412.0
29	TraesCS2B01G235400	chr1A	95.492	843	25	10	1	833	15613016	15612177	0.000000e+00	1334.0
30	TraesCS2B01G235400	chr6B	83.834	433	40	9	1155	1566	79797877	79797454	4.540000e-103	385.0
31	TraesCS2B01G235400	chr6B	89.683	126	13	0	2778	2903	101243443	101243318	8.330000e-36	161.0
32	TraesCS2B01G235400	chr6B	78.884	251	33	15	1560	1793	79797179	79796932	5.010000e-33	152.0
33	TraesCS2B01G235400	chr4D	77.244	479	88	18	2117	2585	49886938	49887405	7.980000e-66	261.0
34	TraesCS2B01G235400	chr6A	77.640	322	62	7	2311	2628	457083511	457083826	1.370000e-43	187.0
35	TraesCS2B01G235400	chr3D	90.769	130	9	2	2774	2900	111181229	111181358	1.380000e-38	171.0
36	TraesCS2B01G235400	chr6D	90.476	126	12	0	2778	2903	268058403	268058528	1.790000e-37	167.0
37	TraesCS2B01G235400	chr3B	90.400	125	12	0	2776	2900	244229518	244229642	6.440000e-37	165.0
38	TraesCS2B01G235400	chr7B	76.344	279	52	11	2333	2607	703243958	703244226	1.400000e-28	137.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G235400	chr2B	235061603	235064505	2902	False	5361.0	5361	100.0000	1	2903	1	chr2B.!!$F1	2902
1	TraesCS2B01G235400	chr2B	235905909	235908104	2195	False	1280.5	1591	90.2295	889	2903	2	chr2B.!!$F3	2014
2	TraesCS2B01G235400	chr2A	193584787	193586886	2099	False	1250.1	2416	93.0130	872	2787	2	chr2A.!!$F3	1915
3	TraesCS2B01G235400	chr2D	178528880	178529725	845	False	1334.0	1334	95.2830	872	1709	1	chr2D.!!$F1	837
4	TraesCS2B01G235400	chr2D	178696613	178698736	2123	False	1263.0	1591	88.1350	872	2778	2	chr2D.!!$F5	1906
5	TraesCS2B01G235400	chr2D	178920843	178921569	726	False	1064.0	1064	93.0610	2052	2783	1	chr2D.!!$F3	731
6	TraesCS2B01G235400	chr2D	178534558	178535544	986	False	813.0	813	81.9920	1758	2778	1	chr2D.!!$F2	1020
7	TraesCS2B01G235400	chr2D	315425059	315425868	809	False	483.0	483	78.5800	1197	1977	1	chr2D.!!$F4	780
8	TraesCS2B01G235400	chr5B	658143148	658143977	829	True	1369.0	1369	96.4160	1	833	1	chr5B.!!$R1	832
9	TraesCS2B01G235400	chr5A	45271562	45272401	839	True	1356.0	1356	95.9670	1	833	1	chr5A.!!$R1	832
10	TraesCS2B01G235400	chr5A	582876197	582877028	831	True	1343.0	1343	95.8230	1	833	1	chr5A.!!$R3	832
11	TraesCS2B01G235400	chr1B	39858186	39859014	828	True	1356.0	1356	96.1720	1	832	1	chr1B.!!$R1	831
12	TraesCS2B01G235400	chr1B	39863641	39864480	839	True	1339.0	1339	95.6110	1	833	1	chr1B.!!$R2	832
13	TraesCS2B01G235400	chr3A	177686375	177687205	830	True	1347.0	1347	95.9430	1	832	1	chr3A.!!$R1	831
14	TraesCS2B01G235400	chr4B	172783196	172784024	828	True	1339.0	1339	95.8130	1	832	1	chr4B.!!$R1	831
15	TraesCS2B01G235400	chrUn	381498810	381499649	839	True	1334.0	1334	95.4920	1	833	1	chrUn.!!$R1	832
16	TraesCS2B01G235400	chr1A	15612177	15613016	839	True	1334.0	1334	95.4920	1	833	1	chr1A.!!$R1	832
17	TraesCS2B01G235400	chr6B	79796932	79797877	945	True	268.5	385	81.3590	1155	1793	2	chr6B.!!$R2	638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
589	598	0.248215	CTCAATCCGCAATCCGCAAC	60.248	55.0	0.0	0.0	42.60	4.17	F
1069	1109	1.089481	GCGAGCAATCAATCGTCCCA	61.089	55.0	0.0	0.0	40.97	4.37	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1756	2396	0.531090	TGCGTACCAACTTGCGAAGT	60.531	50.000	0.0	0.0	45.46	3.01	R
2511	3470	2.168936	ACCACAGAACGACCACTACAAA	59.831	45.455	0.0	0.0	0.00	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
100	101	4.736896	GCGTCCTCGGCGACCTTT	62.737	66.667	4.99	0.00	37.56	3.11
123	124	1.374758	CGGCTTCAGCTTTCTCGGT	60.375	57.895	0.00	0.00	41.70	4.69
293	295	1.679305	GAGACCTGCTCTCCCGTCA	60.679	63.158	0.00	0.00	39.87	4.35
411	413	1.621622	GGCTAGGGTTAGGAGACACCA	60.622	57.143	0.00	0.00	42.04	4.17
584	593	3.025619	CGGCTCAATCCGCAATCC	58.974	61.111	0.00	0.00	43.18	3.01
585	594	2.885676	CGGCTCAATCCGCAATCCG	61.886	63.158	0.00	0.00	43.18	4.18
586	595	2.329339	GCTCAATCCGCAATCCGC	59.671	61.111	0.00	0.00	35.03	5.54
587	596	2.472059	GCTCAATCCGCAATCCGCA	61.472	57.895	0.00	0.00	42.60	5.69
588	597	1.992233	GCTCAATCCGCAATCCGCAA	61.992	55.000	0.00	0.00	42.60	4.85
589	598	0.248215	CTCAATCCGCAATCCGCAAC	60.248	55.000	0.00	0.00	42.60	4.17
590	599	1.226660	CAATCCGCAATCCGCAACC	60.227	57.895	0.00	0.00	42.60	3.77
591	600	2.414785	AATCCGCAATCCGCAACCC	61.415	57.895	0.00	0.00	42.60	4.11
595	604	4.049640	GCAATCCGCAACCCGCAA	62.050	61.111	0.00	0.00	42.60	4.85
596	605	2.126502	CAATCCGCAACCCGCAAC	60.127	61.111	0.00	0.00	42.60	4.17
597	606	3.370231	AATCCGCAACCCGCAACC	61.370	61.111	0.00	0.00	42.60	3.77
833	869	2.756760	GCCCATCTCAGATTTCAGCAAA	59.243	45.455	0.00	0.00	0.00	3.68
834	870	3.194116	GCCCATCTCAGATTTCAGCAAAA	59.806	43.478	0.00	0.00	0.00	2.44
835	871	4.322198	GCCCATCTCAGATTTCAGCAAAAA	60.322	41.667	0.00	0.00	0.00	1.94
836	872	5.166398	CCCATCTCAGATTTCAGCAAAAAC	58.834	41.667	0.00	0.00	0.00	2.43
837	873	5.279106	CCCATCTCAGATTTCAGCAAAAACA	60.279	40.000	0.00	0.00	0.00	2.83
838	874	6.218019	CCATCTCAGATTTCAGCAAAAACAA	58.782	36.000	0.00	0.00	0.00	2.83
839	875	6.872020	CCATCTCAGATTTCAGCAAAAACAAT	59.128	34.615	0.00	0.00	0.00	2.71
840	876	7.386848	CCATCTCAGATTTCAGCAAAAACAATT	59.613	33.333	0.00	0.00	0.00	2.32
841	877	7.703298	TCTCAGATTTCAGCAAAAACAATTG	57.297	32.000	3.24	3.24	0.00	2.32
842	878	7.267128	TCTCAGATTTCAGCAAAAACAATTGT	58.733	30.769	4.92	4.92	32.80	2.71
843	879	8.412456	TCTCAGATTTCAGCAAAAACAATTGTA	58.588	29.630	12.39	0.00	32.80	2.41
844	880	8.939201	TCAGATTTCAGCAAAAACAATTGTAA	57.061	26.923	12.39	0.00	32.80	2.41
845	881	9.376075	TCAGATTTCAGCAAAAACAATTGTAAA	57.624	25.926	12.39	6.44	32.80	2.01
850	886	7.650834	TCAGCAAAAACAATTGTAAATAGCC	57.349	32.000	12.39	0.00	32.80	3.93
851	887	6.648725	TCAGCAAAAACAATTGTAAATAGCCC	59.351	34.615	12.39	0.00	32.80	5.19
852	888	6.650390	CAGCAAAAACAATTGTAAATAGCCCT	59.350	34.615	12.39	0.00	32.80	5.19
853	889	7.816995	CAGCAAAAACAATTGTAAATAGCCCTA	59.183	33.333	12.39	0.00	32.80	3.53
854	890	8.371699	AGCAAAAACAATTGTAAATAGCCCTAA	58.628	29.630	12.39	0.00	32.80	2.69
855	891	8.655970	GCAAAAACAATTGTAAATAGCCCTAAG	58.344	33.333	12.39	0.00	32.80	2.18
856	892	9.921637	CAAAAACAATTGTAAATAGCCCTAAGA	57.078	29.630	12.39	0.00	0.00	2.10
861	897	9.528489	ACAATTGTAAATAGCCCTAAGAAAAGA	57.472	29.630	9.97	0.00	0.00	2.52
865	901	9.802039	TTGTAAATAGCCCTAAGAAAAGAAAGA	57.198	29.630	0.00	0.00	0.00	2.52
866	902	9.975218	TGTAAATAGCCCTAAGAAAAGAAAGAT	57.025	29.630	0.00	0.00	0.00	2.40
879	915	4.453480	AAGAAAGATCTTTGTGGGACCA	57.547	40.909	25.12	0.00	43.43	4.02
961	997	7.033530	AGAACGAGAATGAGAAGGTAGTATG	57.966	40.000	0.00	0.00	0.00	2.39
962	998	6.603997	AGAACGAGAATGAGAAGGTAGTATGT	59.396	38.462	0.00	0.00	0.00	2.29
963	999	7.774157	AGAACGAGAATGAGAAGGTAGTATGTA	59.226	37.037	0.00	0.00	0.00	2.29
964	1000	7.261829	ACGAGAATGAGAAGGTAGTATGTAC	57.738	40.000	0.00	0.00	0.00	2.90
1038	1078	2.102438	TGCGCTGCGAAATCTCCAG	61.102	57.895	28.07	0.00	0.00	3.86
1069	1109	1.089481	GCGAGCAATCAATCGTCCCA	61.089	55.000	0.00	0.00	40.97	4.37
1117	1157	4.477975	GTAGGTGCGCGCGAGACT	62.478	66.667	37.18	27.30	0.00	3.24
1621	1980	1.427419	CTGACTCCTGCGAGAGACG	59.573	63.158	9.60	0.00	45.66	4.18
1662	2265	6.540189	GTGGAATTAGTATGTGTCTGATTGCT	59.460	38.462	0.00	0.00	33.16	3.91
1737	2377	5.220453	CGCCTGTTTTTATTCCATGCAAATC	60.220	40.000	0.00	0.00	0.00	2.17
1747	2387	2.618241	TCCATGCAAATCTCCATTACGC	59.382	45.455	0.00	0.00	0.00	4.42
1749	2389	3.304257	CCATGCAAATCTCCATTACGCTC	60.304	47.826	0.00	0.00	0.00	5.03
1750	2390	3.266510	TGCAAATCTCCATTACGCTCT	57.733	42.857	0.00	0.00	0.00	4.09
1751	2391	3.609853	TGCAAATCTCCATTACGCTCTT	58.390	40.909	0.00	0.00	0.00	2.85
1752	2392	3.623060	TGCAAATCTCCATTACGCTCTTC	59.377	43.478	0.00	0.00	0.00	2.87
1753	2393	3.302740	GCAAATCTCCATTACGCTCTTCG	60.303	47.826	0.00	0.00	45.38	3.79
1754	2394	2.141535	ATCTCCATTACGCTCTTCGC	57.858	50.000	0.00	0.00	43.23	4.70
1755	2395	0.815095	TCTCCATTACGCTCTTCGCA	59.185	50.000	0.00	0.00	43.23	5.10
1756	2396	1.203758	TCTCCATTACGCTCTTCGCAA	59.796	47.619	0.00	0.00	43.23	4.85
1925	2851	7.859325	ATAACCATAGCTTAAAATCACACGT	57.141	32.000	0.00	0.00	0.00	4.49
1930	2856	8.569641	ACCATAGCTTAAAATCACACGTTTTTA	58.430	29.630	0.00	0.00	31.71	1.52
1936	2862	7.009357	GCTTAAAATCACACGTTTTTAACCACA	59.991	33.333	10.21	0.00	34.01	4.17
2155	3100	8.800332	CCACTTCAGTTAGTAGTTTAGGTTAGA	58.200	37.037	0.00	0.00	0.00	2.10
2281	3240	0.033504	TAATCGATGGAGCTTCGGCC	59.966	55.000	0.00	0.00	43.01	6.13
2457	3416	3.322541	TGGTTGTCATCTACGAGGTCAAA	59.677	43.478	0.00	0.00	0.00	2.69
2511	3470	2.107141	GGCGGCTCGTTCTAGCAT	59.893	61.111	0.00	0.00	44.64	3.79
2527	3486	3.402628	AGCATTTGTAGTGGTCGTTCT	57.597	42.857	0.00	0.00	0.00	3.01
2553	3512	9.085645	TGTGGTCTCGGAATATTAATGTACTAT	57.914	33.333	0.00	0.00	0.00	2.12
2554	3513	9.924650	GTGGTCTCGGAATATTAATGTACTATT	57.075	33.333	0.00	0.00	0.00	1.73
2713	3677	1.734655	GGGGATGGAGCAGATTCCTA	58.265	55.000	0.00	0.00	38.12	2.94
2845	3860	6.765403	TGTTGTTAGTCTATGTTGCTACCTT	58.235	36.000	0.00	0.00	0.00	3.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
100	101	1.873591	GAGAAAGCTGAAGCCGACAAA	59.126	47.619	0.00	0.00	43.38	2.83
228	229	2.070650	GGGGTGAGGGCGAATAGGT	61.071	63.158	0.00	0.00	0.00	3.08
293	295	3.604667	TCCGCCACGTACACGGTT	61.605	61.111	18.84	0.00	46.92	4.44
411	413	2.457366	GGCTGCGCCTATAAGTATGT	57.543	50.000	4.18	0.00	46.69	2.29
767	803	5.431731	TCTGAAAAATCTCTAAGGGCCCATA	59.568	40.000	27.56	16.81	0.00	2.74
835	871	9.528489	TCTTTTCTTAGGGCTATTTACAATTGT	57.472	29.630	16.68	16.68	0.00	2.71
839	875	9.802039	TCTTTCTTTTCTTAGGGCTATTTACAA	57.198	29.630	0.00	0.00	0.00	2.41
840	876	9.975218	ATCTTTCTTTTCTTAGGGCTATTTACA	57.025	29.630	0.00	0.00	0.00	2.41
843	879	9.760926	AAGATCTTTCTTTTCTTAGGGCTATTT	57.239	29.630	0.88	0.00	39.18	1.40
858	894	4.104738	TCTGGTCCCACAAAGATCTTTCTT	59.895	41.667	17.91	5.42	44.20	2.52
859	895	3.652869	TCTGGTCCCACAAAGATCTTTCT	59.347	43.478	17.91	3.74	0.00	2.52
860	896	4.021102	TCTGGTCCCACAAAGATCTTTC	57.979	45.455	17.91	5.81	0.00	2.62
861	897	4.664688	ATCTGGTCCCACAAAGATCTTT	57.335	40.909	15.11	15.11	0.00	2.52
862	898	4.338879	CAATCTGGTCCCACAAAGATCTT	58.661	43.478	0.88	0.88	0.00	2.40
863	899	3.875369	GCAATCTGGTCCCACAAAGATCT	60.875	47.826	0.00	0.00	0.00	2.75
864	900	2.424956	GCAATCTGGTCCCACAAAGATC	59.575	50.000	0.00	0.00	0.00	2.75
865	901	2.450476	GCAATCTGGTCCCACAAAGAT	58.550	47.619	0.00	0.00	0.00	2.40
866	902	1.547675	GGCAATCTGGTCCCACAAAGA	60.548	52.381	0.00	0.00	0.00	2.52
867	903	0.890683	GGCAATCTGGTCCCACAAAG	59.109	55.000	0.00	0.00	0.00	2.77
868	904	0.482446	AGGCAATCTGGTCCCACAAA	59.518	50.000	0.00	0.00	0.00	2.83
869	905	0.251297	CAGGCAATCTGGTCCCACAA	60.251	55.000	0.00	0.00	39.76	3.33
870	906	1.379916	CAGGCAATCTGGTCCCACA	59.620	57.895	0.00	0.00	39.76	4.17
932	968	5.480205	ACCTTCTCATTCTCGTTCTTTACC	58.520	41.667	0.00	0.00	0.00	2.85
961	997	6.823497	TGTGTCCTGGCCTTTTATATAGTAC	58.177	40.000	3.32	0.00	0.00	2.73
962	998	7.440505	TTGTGTCCTGGCCTTTTATATAGTA	57.559	36.000	3.32	0.00	0.00	1.82
963	999	5.968676	TGTGTCCTGGCCTTTTATATAGT	57.031	39.130	3.32	0.00	0.00	2.12
964	1000	5.239525	GCTTGTGTCCTGGCCTTTTATATAG	59.760	44.000	3.32	0.00	0.00	1.31
1069	1109	4.194720	GACGATCGTGCTCCCGCT	62.195	66.667	28.12	0.00	36.97	5.52
1117	1157	0.524816	GCGAGTTACCGATCGAGCAA	60.525	55.000	18.66	4.24	41.40	3.91
1297	1343	2.659063	CCTGAGGCCGGACATGACA	61.659	63.158	11.69	2.84	0.00	3.58
1399	1454	1.685224	CAGCAGCCCCACCTTCTTA	59.315	57.895	0.00	0.00	0.00	2.10
1621	1980	4.737855	TTCCACAGTACATCTCTAAGGC	57.262	45.455	0.00	0.00	0.00	4.35
1662	2265	1.901591	AAGGTAGACACGACGGAGAA	58.098	50.000	0.00	0.00	0.00	2.87
1747	2387	0.861837	ACTTGCGAAGTTGCGAAGAG	59.138	50.000	8.70	0.00	39.04	2.85
1756	2396	0.531090	TGCGTACCAACTTGCGAAGT	60.531	50.000	0.00	0.00	45.46	3.01
1861	2779	1.514657	TATGACGTACGTGCGGTGC	60.515	57.895	28.16	17.85	35.98	5.01
1923	2849	6.153067	TCTATTGGCAATGTGGTTAAAAACG	58.847	36.000	22.57	0.00	0.00	3.60
1925	2851	9.566432	AAAATCTATTGGCAATGTGGTTAAAAA	57.434	25.926	22.57	0.00	0.00	1.94
2012	2939	3.227273	GGGGGAGAGGGAGTAACTC	57.773	63.158	0.00	0.00	35.20	3.01
2160	3107	5.299279	CGCCACACCTATGAGGATTAAAAAT	59.701	40.000	0.00	0.00	38.80	1.82
2161	3108	4.638421	CGCCACACCTATGAGGATTAAAAA	59.362	41.667	0.00	0.00	38.80	1.94
2281	3240	3.307059	CCCAGGAAGACAACAGGAACTAG	60.307	52.174	0.00	0.00	36.02	2.57
2511	3470	2.168936	ACCACAGAACGACCACTACAAA	59.831	45.455	0.00	0.00	0.00	2.83
2527	3486	7.356089	AGTACATTAATATTCCGAGACCACA	57.644	36.000	0.00	0.00	0.00	4.17
2713	3677	9.525826	CTCCATAATTAGGCCTCATAATTCTTT	57.474	33.333	9.68	0.00	35.17	2.52
2822	3837	7.668525	AAAGGTAGCAACATAGACTAACAAC	57.331	36.000	0.00	0.00	0.00	3.32
2871	3886	9.524106	CATAATAAATGAAGTGTTGCATGACAT	57.476	29.630	0.00	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.