Multiple sequence alignment - TraesCS2B01G235200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G235200 chr2B 100.000 2666 0 0 1 2666 235050127 235052792 0.000000e+00 4924.0
1 TraesCS2B01G235200 chr2B 91.842 1471 58 32 526 1972 235584777 235586209 0.000000e+00 1995.0
2 TraesCS2B01G235200 chr2B 94.571 700 24 4 1969 2666 235586321 235587008 0.000000e+00 1070.0
3 TraesCS2B01G235200 chr2B 95.429 350 15 1 1 350 235583620 235583968 8.340000e-155 556.0
4 TraesCS2B01G235200 chr2D 94.944 1859 61 15 831 2666 178853038 178854886 0.000000e+00 2881.0
5 TraesCS2B01G235200 chr2D 94.247 1860 72 16 831 2666 178505518 178507366 0.000000e+00 2809.0
6 TraesCS2B01G235200 chr2D 90.947 1447 84 21 831 2252 178667243 178668667 0.000000e+00 1903.0
7 TraesCS2B01G235200 chr2D 96.321 299 11 0 2368 2666 178668853 178669151 2.380000e-135 492.0
8 TraesCS2B01G235200 chr2D 90.446 157 1 3 2242 2384 178668685 178668841 7.530000e-46 195.0
9 TraesCS2B01G235200 chr2D 92.661 109 5 2 561 669 178505362 178505467 1.280000e-33 154.0
10 TraesCS2B01G235200 chr2D 100.000 71 0 0 1998 2068 178506766 178506696 5.990000e-27 132.0
11 TraesCS2B01G235200 chr2D 89.623 106 8 3 558 661 178667082 178667186 5.990000e-27 132.0
12 TraesCS2B01G235200 chr2D 85.938 64 6 2 1996 2056 649506144 649506207 6.160000e-07 65.8
13 TraesCS2B01G235200 chr2A 91.053 1766 81 27 947 2666 193547242 193548976 0.000000e+00 2314.0
14 TraesCS2B01G235200 chr2A 86.869 99 5 3 565 661 193543846 193543938 1.310000e-18 104.0
15 TraesCS2B01G235200 chr2A 97.500 40 1 0 1998 2037 14947802 14947763 4.760000e-08 69.4
16 TraesCS2B01G235200 chr3B 86.667 75 9 1 1994 2068 205684173 205684246 6.120000e-12 82.4
17 TraesCS2B01G235200 chr6A 90.476 42 4 0 2029 2070 193833563 193833604 3.710000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G235200 chr2B 235050127 235052792 2665 False 4924.0 4924 100.000000 1 2666 1 chr2B.!!$F1 2665
1 TraesCS2B01G235200 chr2B 235583620 235587008 3388 False 1207.0 1995 93.947333 1 2666 3 chr2B.!!$F2 2665
2 TraesCS2B01G235200 chr2D 178853038 178854886 1848 False 2881.0 2881 94.944000 831 2666 1 chr2D.!!$F1 1835
3 TraesCS2B01G235200 chr2D 178505362 178507366 2004 False 1481.5 2809 93.454000 561 2666 2 chr2D.!!$F3 2105
4 TraesCS2B01G235200 chr2D 178667082 178669151 2069 False 680.5 1903 91.834250 558 2666 4 chr2D.!!$F4 2108
5 TraesCS2B01G235200 chr2A 193543846 193548976 5130 False 1209.0 2314 88.961000 565 2666 2 chr2A.!!$F1 2101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 707 0.243907 TACTGTTGACTCGCAGGAGC 59.756 55.0 0.0 0.0 44.48 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 5532 0.514691 CAGAAGGAAAGCGTGCTCAC 59.485 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.592529 TTTCATGTTTCCCATCAGATTATCAA 57.407 30.769 0.00 0.00 0.00 2.57
90 91 9.199645 TGCTATATTTCATCATTTTCCTTTCCA 57.800 29.630 0.00 0.00 0.00 3.53
97 98 7.077050 TCATCATTTTCCTTTCCAAAATGGT 57.923 32.000 14.72 7.64 45.42 3.55
120 121 5.793457 GTCGTTGAATTGCTTACCAATGTAC 59.207 40.000 0.00 0.00 43.22 2.90
180 181 2.192175 GCCCCCGGGTCATTACAG 59.808 66.667 21.85 0.03 37.65 2.74
250 251 7.706607 ACAACTTTTAGCTTTTCCACAATTCTC 59.293 33.333 0.00 0.00 0.00 2.87
312 313 5.182190 TGAAATCCACAACTTAGCGCAAATA 59.818 36.000 11.47 0.00 0.00 1.40
390 606 7.750229 TTTTTGCTGAGATTTAGTCAGATGT 57.250 32.000 4.28 0.00 43.65 3.06
391 607 6.974932 TTTGCTGAGATTTAGTCAGATGTC 57.025 37.500 4.28 0.00 43.65 3.06
392 608 5.016051 TGCTGAGATTTAGTCAGATGTCC 57.984 43.478 4.28 0.00 43.65 4.02
393 609 4.467438 TGCTGAGATTTAGTCAGATGTCCA 59.533 41.667 4.28 0.00 43.65 4.02
396 612 6.183360 GCTGAGATTTAGTCAGATGTCCAAAC 60.183 42.308 4.28 0.00 43.65 2.93
397 613 6.768483 TGAGATTTAGTCAGATGTCCAAACA 58.232 36.000 0.00 0.00 40.38 2.83
398 614 6.650807 TGAGATTTAGTCAGATGTCCAAACAC 59.349 38.462 0.00 0.00 38.48 3.32
400 616 1.512926 AGTCAGATGTCCAAACACGC 58.487 50.000 0.00 0.00 38.48 5.34
401 617 1.070758 AGTCAGATGTCCAAACACGCT 59.929 47.619 0.00 0.00 38.48 5.07
403 619 1.069978 TCAGATGTCCAAACACGCTGA 59.930 47.619 8.17 8.17 42.88 4.26
404 620 1.872952 CAGATGTCCAAACACGCTGAA 59.127 47.619 4.97 0.00 40.76 3.02
405 621 2.290367 CAGATGTCCAAACACGCTGAAA 59.710 45.455 4.97 0.00 40.76 2.69
406 622 3.058016 CAGATGTCCAAACACGCTGAAAT 60.058 43.478 4.97 0.00 40.76 2.17
407 623 3.569701 AGATGTCCAAACACGCTGAAATT 59.430 39.130 0.00 0.00 38.48 1.82
408 624 3.791973 TGTCCAAACACGCTGAAATTT 57.208 38.095 0.00 0.00 0.00 1.82
409 625 4.902443 TGTCCAAACACGCTGAAATTTA 57.098 36.364 0.00 0.00 0.00 1.40
410 626 4.854399 TGTCCAAACACGCTGAAATTTAG 58.146 39.130 0.00 0.00 0.00 1.85
411 627 3.668656 GTCCAAACACGCTGAAATTTAGC 59.331 43.478 0.00 0.00 37.80 3.09
412 628 3.316588 TCCAAACACGCTGAAATTTAGCA 59.683 39.130 10.34 1.30 41.18 3.49
413 629 3.425193 CCAAACACGCTGAAATTTAGCAC 59.575 43.478 10.34 0.00 41.18 4.40
414 630 2.594529 ACACGCTGAAATTTAGCACG 57.405 45.000 10.34 2.67 41.18 5.34
415 631 2.139917 ACACGCTGAAATTTAGCACGA 58.860 42.857 10.34 0.00 41.18 4.35
416 632 2.157668 ACACGCTGAAATTTAGCACGAG 59.842 45.455 10.34 8.45 41.18 4.18
417 633 1.128692 ACGCTGAAATTTAGCACGAGC 59.871 47.619 10.34 0.00 41.18 5.03
418 634 1.529826 CGCTGAAATTTAGCACGAGCC 60.530 52.381 10.34 0.00 43.56 4.70
419 635 1.740025 GCTGAAATTTAGCACGAGCCT 59.260 47.619 4.81 0.00 43.56 4.58
420 636 2.936498 GCTGAAATTTAGCACGAGCCTA 59.064 45.455 4.81 0.00 43.56 3.93
421 637 3.374058 GCTGAAATTTAGCACGAGCCTAA 59.626 43.478 4.81 0.00 43.56 2.69
484 700 7.408132 TTCTTCTGATTTTACTGTTGACTCG 57.592 36.000 0.00 0.00 0.00 4.18
485 701 5.405571 TCTTCTGATTTTACTGTTGACTCGC 59.594 40.000 0.00 0.00 0.00 5.03
487 703 4.686091 TCTGATTTTACTGTTGACTCGCAG 59.314 41.667 0.00 0.00 38.58 5.18
488 704 3.745975 TGATTTTACTGTTGACTCGCAGG 59.254 43.478 0.00 0.00 37.07 4.85
489 705 3.462483 TTTTACTGTTGACTCGCAGGA 57.538 42.857 0.00 0.00 37.07 3.86
490 706 2.724977 TTACTGTTGACTCGCAGGAG 57.275 50.000 0.00 0.00 46.13 3.69
491 707 0.243907 TACTGTTGACTCGCAGGAGC 59.756 55.000 0.00 0.00 44.48 4.70
493 966 1.005748 TGTTGACTCGCAGGAGCAG 60.006 57.895 0.00 0.00 44.48 4.24
499 972 1.592131 CTCGCAGGAGCAGATGAGC 60.592 63.158 0.00 0.00 42.27 4.26
508 981 2.758736 AGCAGATGAGCTCTCGTTTT 57.241 45.000 16.19 0.00 42.18 2.43
510 983 3.779759 AGCAGATGAGCTCTCGTTTTAG 58.220 45.455 16.19 0.00 42.18 1.85
512 985 4.099266 AGCAGATGAGCTCTCGTTTTAGAT 59.901 41.667 16.19 0.00 42.18 1.98
513 986 4.444056 GCAGATGAGCTCTCGTTTTAGATC 59.556 45.833 16.19 6.06 29.16 2.75
514 987 5.586339 CAGATGAGCTCTCGTTTTAGATCA 58.414 41.667 16.19 0.00 41.87 2.92
515 988 5.686841 CAGATGAGCTCTCGTTTTAGATCAG 59.313 44.000 16.19 0.00 41.06 2.90
516 989 5.592282 AGATGAGCTCTCGTTTTAGATCAGA 59.408 40.000 16.19 0.00 41.06 3.27
517 990 5.242069 TGAGCTCTCGTTTTAGATCAGAG 57.758 43.478 16.19 0.00 33.47 3.35
521 994 5.242069 CTCTCGTTTTAGATCAGAGCAGA 57.758 43.478 0.00 0.00 0.00 4.26
522 995 5.830912 CTCTCGTTTTAGATCAGAGCAGAT 58.169 41.667 0.00 0.00 0.00 2.90
532 1172 1.904537 TCAGAGCAGATGAGCTTTGGA 59.095 47.619 6.63 0.00 46.75 3.53
562 1202 1.070309 GCTGCTCTCACACTTTCGTTG 60.070 52.381 0.00 0.00 0.00 4.10
566 1206 3.438781 TGCTCTCACACTTTCGTTGTTTT 59.561 39.130 0.00 0.00 0.00 2.43
720 4200 7.827819 TGTATACGATGACCTCAAAAGAAAG 57.172 36.000 0.00 0.00 0.00 2.62
751 4236 8.912988 TGATGTATTGTGTTTTCCTCTCTTTTT 58.087 29.630 0.00 0.00 0.00 1.94
796 4281 3.896648 CGTAGCTCCTTGCAAAAGAAA 57.103 42.857 11.65 0.00 45.94 2.52
797 4282 4.223320 CGTAGCTCCTTGCAAAAGAAAA 57.777 40.909 11.65 0.00 45.94 2.29
798 4283 4.606961 CGTAGCTCCTTGCAAAAGAAAAA 58.393 39.130 11.65 0.00 45.94 1.94
822 4307 8.895932 AAAAGAAAAACTACGCATAGCTATTG 57.104 30.769 2.64 2.23 30.75 1.90
826 4311 3.469008 ACTACGCATAGCTATTGGCAA 57.531 42.857 14.43 0.68 44.79 4.52
827 4312 3.131396 ACTACGCATAGCTATTGGCAAC 58.869 45.455 14.43 0.00 44.79 4.17
970 4756 2.540145 CGAAAGCAAACCCTAGCGT 58.460 52.632 0.00 0.00 35.48 5.07
1662 5448 1.938585 TCTCAGGATTCAACCGGAGT 58.061 50.000 9.46 0.00 46.76 3.85
1723 5532 4.424061 TTGCATTTGAATCGTCAGGAAG 57.576 40.909 0.00 0.00 34.49 3.46
1725 5534 3.189080 TGCATTTGAATCGTCAGGAAGTG 59.811 43.478 0.00 0.00 34.49 3.16
1783 5592 3.651562 ACTGTCGTTTCTGTGTTTTCG 57.348 42.857 0.00 0.00 0.00 3.46
1826 5635 1.661463 TCCATCCAGCAGAGGAAAGT 58.339 50.000 0.00 0.00 41.92 2.66
1827 5636 1.988107 TCCATCCAGCAGAGGAAAGTT 59.012 47.619 0.00 0.00 41.92 2.66
1901 5710 6.061022 TGGCCTAAATATCAAGTCTGTCAA 57.939 37.500 3.32 0.00 0.00 3.18
1988 5913 3.555917 AGTAGCGTGTTACAGTCAGTC 57.444 47.619 0.00 0.00 0.00 3.51
2338 6306 1.162698 CACTGACCTGCATGGACAAG 58.837 55.000 8.91 5.88 39.78 3.16
2427 6448 1.411977 CAGTCTCATGTCTAGGGCCAG 59.588 57.143 6.18 0.85 0.00 4.85
2536 6559 0.242825 CCTGCATTGACAACTGCTGG 59.757 55.000 21.89 21.89 46.50 4.85
2661 6684 4.403752 TGACTATGACTCCACTGAATCTGG 59.596 45.833 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.556999 TCAACGACCATTTTGGAAAGGA 58.443 40.909 0.00 0.00 40.96 3.36
84 85 5.333263 GCAATTCAACGACCATTTTGGAAAG 60.333 40.000 0.00 0.00 40.96 2.62
87 88 3.320541 AGCAATTCAACGACCATTTTGGA 59.679 39.130 0.00 0.00 40.96 3.53
88 89 3.652274 AGCAATTCAACGACCATTTTGG 58.348 40.909 0.00 0.00 45.02 3.28
89 90 5.118510 GGTAAGCAATTCAACGACCATTTTG 59.881 40.000 0.00 0.00 0.00 2.44
90 91 5.221342 TGGTAAGCAATTCAACGACCATTTT 60.221 36.000 0.00 0.00 30.67 1.82
97 98 5.470437 TGTACATTGGTAAGCAATTCAACGA 59.530 36.000 0.00 0.00 0.00 3.85
201 202 3.872771 TCGTTTGAGACAACTGTAAACCC 59.127 43.478 0.00 0.00 31.73 4.11
210 211 6.021704 GCTAAAAGTTGTTCGTTTGAGACAAC 60.022 38.462 9.81 9.81 40.43 3.32
250 251 6.551385 AGCTAAGAAAGATGTTGTGAACTG 57.449 37.500 0.00 0.00 0.00 3.16
293 294 5.440234 TTTTATTTGCGCTAAGTTGTGGA 57.560 34.783 9.73 0.00 0.00 4.02
373 589 6.650807 GTGTTTGGACATCTGACTAAATCTCA 59.349 38.462 0.00 0.00 38.23 3.27
374 590 6.183360 CGTGTTTGGACATCTGACTAAATCTC 60.183 42.308 0.00 0.00 38.23 2.75
376 592 5.671329 GCGTGTTTGGACATCTGACTAAATC 60.671 44.000 0.00 0.00 38.23 2.17
378 594 3.496884 GCGTGTTTGGACATCTGACTAAA 59.503 43.478 0.00 0.00 38.23 1.85
379 595 3.064207 GCGTGTTTGGACATCTGACTAA 58.936 45.455 0.00 0.00 38.23 2.24
381 597 1.070758 AGCGTGTTTGGACATCTGACT 59.929 47.619 0.00 0.00 38.23 3.41
383 599 1.069978 TCAGCGTGTTTGGACATCTGA 59.930 47.619 9.06 9.06 41.57 3.27
386 602 3.559238 ATTTCAGCGTGTTTGGACATC 57.441 42.857 0.00 0.00 38.23 3.06
387 603 4.320608 AAATTTCAGCGTGTTTGGACAT 57.679 36.364 0.00 0.00 38.23 3.06
388 604 3.791973 AAATTTCAGCGTGTTTGGACA 57.208 38.095 0.00 0.00 0.00 4.02
389 605 3.668656 GCTAAATTTCAGCGTGTTTGGAC 59.331 43.478 0.00 0.00 0.00 4.02
390 606 3.316588 TGCTAAATTTCAGCGTGTTTGGA 59.683 39.130 0.00 0.00 42.13 3.53
391 607 3.425193 GTGCTAAATTTCAGCGTGTTTGG 59.575 43.478 0.00 0.00 42.13 3.28
392 608 3.117832 CGTGCTAAATTTCAGCGTGTTTG 59.882 43.478 0.00 0.00 42.13 2.93
393 609 3.002862 TCGTGCTAAATTTCAGCGTGTTT 59.997 39.130 0.00 0.00 42.13 2.83
396 612 2.762472 CTCGTGCTAAATTTCAGCGTG 58.238 47.619 0.00 0.33 42.13 5.34
397 613 1.128692 GCTCGTGCTAAATTTCAGCGT 59.871 47.619 1.41 0.00 42.13 5.07
398 614 1.529826 GGCTCGTGCTAAATTTCAGCG 60.530 52.381 9.61 0.00 42.13 5.18
400 616 5.545658 TTTAGGCTCGTGCTAAATTTCAG 57.454 39.130 9.61 0.00 39.59 3.02
401 617 5.950758 TTTTAGGCTCGTGCTAAATTTCA 57.049 34.783 9.61 0.00 39.59 2.69
458 674 8.335356 CGAGTCAACAGTAAAATCAGAAGAAAA 58.665 33.333 0.00 0.00 0.00 2.29
459 675 7.518370 GCGAGTCAACAGTAAAATCAGAAGAAA 60.518 37.037 0.00 0.00 0.00 2.52
461 677 5.405571 GCGAGTCAACAGTAAAATCAGAAGA 59.594 40.000 0.00 0.00 0.00 2.87
462 678 5.177511 TGCGAGTCAACAGTAAAATCAGAAG 59.822 40.000 0.00 0.00 0.00 2.85
464 680 4.627058 TGCGAGTCAACAGTAAAATCAGA 58.373 39.130 0.00 0.00 0.00 3.27
465 681 4.143030 CCTGCGAGTCAACAGTAAAATCAG 60.143 45.833 8.83 0.00 31.76 2.90
467 683 3.994392 TCCTGCGAGTCAACAGTAAAATC 59.006 43.478 8.83 0.00 31.76 2.17
474 690 1.005748 TGCTCCTGCGAGTCAACAG 60.006 57.895 3.64 3.64 43.34 3.16
476 692 0.108424 ATCTGCTCCTGCGAGTCAAC 60.108 55.000 0.00 0.00 43.34 3.18
477 693 0.108472 CATCTGCTCCTGCGAGTCAA 60.108 55.000 0.00 0.00 43.34 3.18
481 697 1.592131 GCTCATCTGCTCCTGCGAG 60.592 63.158 0.00 0.00 43.34 5.03
482 698 2.056815 AGCTCATCTGCTCCTGCGA 61.057 57.895 0.00 0.00 39.34 5.10
483 699 2.500165 AGCTCATCTGCTCCTGCG 59.500 61.111 0.00 0.00 39.34 5.18
490 706 3.775202 TCTAAAACGAGAGCTCATCTGC 58.225 45.455 17.77 0.00 38.84 4.26
491 707 5.586339 TGATCTAAAACGAGAGCTCATCTG 58.414 41.667 17.77 4.73 38.84 2.90
493 966 5.826586 TCTGATCTAAAACGAGAGCTCATC 58.173 41.667 17.77 9.60 32.92 2.92
499 972 5.242069 TCTGCTCTGATCTAAAACGAGAG 57.758 43.478 0.00 0.00 34.48 3.20
503 976 4.208873 GCTCATCTGCTCTGATCTAAAACG 59.791 45.833 0.00 0.00 0.00 3.60
508 981 4.202233 CCAAAGCTCATCTGCTCTGATCTA 60.202 45.833 0.00 0.00 43.24 1.98
510 983 2.873472 CCAAAGCTCATCTGCTCTGATC 59.127 50.000 0.00 0.00 43.24 2.92
512 985 1.904537 TCCAAAGCTCATCTGCTCTGA 59.095 47.619 0.00 0.00 43.24 3.27
513 986 2.398252 TCCAAAGCTCATCTGCTCTG 57.602 50.000 0.00 0.00 43.24 3.35
514 987 2.988570 CTTCCAAAGCTCATCTGCTCT 58.011 47.619 0.00 0.00 43.24 4.09
566 1206 2.928801 TGCCTGTAGTTCTCAGCAAA 57.071 45.000 0.00 0.00 0.00 3.68
695 4175 8.258007 TCTTTCTTTTGAGGTCATCGTATACAT 58.742 33.333 3.32 0.00 0.00 2.29
720 4200 9.346725 GAGAGGAAAACACAATACATCATTTTC 57.653 33.333 0.00 0.00 36.02 2.29
796 4281 9.341899 CAATAGCTATGCGTAGTTTTTCTTTTT 57.658 29.630 14.37 0.00 0.00 1.94
797 4282 7.968405 CCAATAGCTATGCGTAGTTTTTCTTTT 59.032 33.333 14.37 2.05 0.00 2.27
798 4283 7.472543 CCAATAGCTATGCGTAGTTTTTCTTT 58.527 34.615 14.37 0.00 0.00 2.52
801 4286 5.205565 GCCAATAGCTATGCGTAGTTTTTC 58.794 41.667 14.37 0.00 38.99 2.29
1252 5038 2.806856 GCATGAAGAGCGCGAGGTG 61.807 63.158 12.10 0.00 45.11 4.00
1723 5532 0.514691 CAGAAGGAAAGCGTGCTCAC 59.485 55.000 0.00 0.00 0.00 3.51
1725 5534 0.793250 GACAGAAGGAAAGCGTGCTC 59.207 55.000 0.00 0.00 0.00 4.26
1783 5592 1.165270 CACCGGAAACAACCTCCATC 58.835 55.000 9.46 0.00 32.77 3.51
1826 5635 1.328279 TGCTTCTCGTCCTCTGACAA 58.672 50.000 0.00 0.00 41.85 3.18
1827 5636 1.270826 CTTGCTTCTCGTCCTCTGACA 59.729 52.381 0.00 0.00 41.85 3.58
1845 5654 1.373999 GCGTCTGCTGTGAGCTCTT 60.374 57.895 16.19 0.00 42.97 2.85
1988 5913 2.100197 TGACGGAGGGAGTAATGACTG 58.900 52.381 0.00 0.00 35.45 3.51
2097 6034 8.863049 GTGCAAAACATTGAATAGTCTTTATGG 58.137 33.333 0.00 0.00 0.00 2.74
2098 6035 8.577939 CGTGCAAAACATTGAATAGTCTTTATG 58.422 33.333 0.00 0.00 0.00 1.90
2112 6051 1.401409 CGAGCCATCGTGCAAAACATT 60.401 47.619 0.00 0.00 44.09 2.71
2338 6306 6.935208 AGAAGAACACAGGGAAATACTGTAAC 59.065 38.462 0.00 0.00 46.76 2.50
2427 6448 3.511699 TGCTCAGAACATGTATGTCGTC 58.488 45.455 0.00 0.00 40.80 4.20
2536 6559 1.325355 CCACATTCTCATGGCCATCC 58.675 55.000 17.61 0.00 34.27 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.