Multiple sequence alignment - TraesCS2B01G233300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G233300 chr2B 100.000 6391 0 0 1 6391 231966312 231972702 0.000000e+00 11803.0
1 TraesCS2B01G233300 chr2B 98.225 169 1 2 3885 4052 246361823 246361990 1.740000e-75 294.0
2 TraesCS2B01G233300 chr2B 96.067 178 5 2 3878 4054 75846389 75846565 8.110000e-74 289.0
3 TraesCS2B01G233300 chr2B 94.030 134 8 0 129 262 721714650 721714783 3.020000e-48 204.0
4 TraesCS2B01G233300 chr2B 96.970 33 1 0 4352 4384 44408350 44408382 8.950000e-04 56.5
5 TraesCS2B01G233300 chr2B 100.000 30 0 0 4296 4325 231970358 231970387 8.950000e-04 56.5
6 TraesCS2B01G233300 chr2B 100.000 30 0 0 4047 4076 231970607 231970636 8.950000e-04 56.5
7 TraesCS2B01G233300 chr2D 95.007 3505 126 27 256 3744 165547417 165543946 0.000000e+00 5457.0
8 TraesCS2B01G233300 chr2D 94.533 1445 54 17 4415 5853 165543257 165541832 0.000000e+00 2207.0
9 TraesCS2B01G233300 chr2D 94.036 503 24 6 5893 6391 165541748 165541248 0.000000e+00 758.0
10 TraesCS2B01G233300 chr2D 96.524 374 10 3 4047 4418 165543767 165543395 3.270000e-172 616.0
11 TraesCS2B01G233300 chr2D 97.368 38 1 0 4288 4325 165543775 165543738 1.490000e-06 65.8
12 TraesCS2B01G233300 chr2A 94.412 2380 83 20 4028 6391 185123425 185125770 0.000000e+00 3613.0
13 TraesCS2B01G233300 chr2A 93.947 2412 88 20 1536 3905 185120707 185123102 0.000000e+00 3592.0
14 TraesCS2B01G233300 chr2A 88.807 1215 78 31 253 1422 185119503 185120704 0.000000e+00 1437.0
15 TraesCS2B01G233300 chr2A 96.685 181 4 2 3878 4057 199082322 199082143 3.750000e-77 300.0
16 TraesCS2B01G233300 chr2A 97.674 172 3 1 3885 4055 495825625 495825454 1.740000e-75 294.0
17 TraesCS2B01G233300 chr2A 100.000 31 0 0 4358 4388 559415204 559415174 2.490000e-04 58.4
18 TraesCS2B01G233300 chr2A 100.000 30 0 0 4296 4325 185123444 185123473 8.950000e-04 56.5
19 TraesCS2B01G233300 chr2A 100.000 30 0 0 4047 4076 185123691 185123720 8.950000e-04 56.5
20 TraesCS2B01G233300 chr1B 98.214 168 2 1 3882 4048 606362442 606362609 6.270000e-75 292.0
21 TraesCS2B01G233300 chr1B 96.850 127 4 0 132 258 167585697 167585571 5.020000e-51 213.0
22 TraesCS2B01G233300 chr5B 95.604 182 4 4 3879 4057 522874672 522874852 8.110000e-74 289.0
23 TraesCS2B01G233300 chr5B 100.000 29 0 0 5657 5685 621462464 621462492 3.000000e-03 54.7
24 TraesCS2B01G233300 chr3B 96.067 178 5 2 3876 4052 132658029 132657853 8.110000e-74 289.0
25 TraesCS2B01G233300 chr3B 95.082 183 7 2 3885 4066 78578617 78578436 2.920000e-73 287.0
26 TraesCS2B01G233300 chr3B 92.308 143 11 0 124 266 813313259 813313401 3.020000e-48 204.0
27 TraesCS2B01G233300 chr3B 100.000 30 0 0 4354 4383 46266094 46266123 8.950000e-04 56.5
28 TraesCS2B01G233300 chr6B 97.605 167 3 1 3883 4048 703948891 703948725 1.050000e-72 285.0
29 TraesCS2B01G233300 chr6B 92.105 38 1 2 4357 4394 4124895 4124860 1.200000e-02 52.8
30 TraesCS2B01G233300 chr6A 93.793 145 7 2 117 259 554386113 554386257 3.880000e-52 217.0
31 TraesCS2B01G233300 chr1A 94.815 135 7 0 124 258 530167086 530166952 1.810000e-50 211.0
32 TraesCS2B01G233300 chr1A 94.776 134 6 1 125 258 547018662 547018794 2.340000e-49 207.0
33 TraesCS2B01G233300 chr4A 95.455 132 5 1 131 262 534229353 534229483 6.490000e-50 209.0
34 TraesCS2B01G233300 chr1D 93.478 138 9 0 129 266 96916533 96916670 8.400000e-49 206.0
35 TraesCS2B01G233300 chr7B 87.805 164 19 1 115 278 744645682 744645844 2.350000e-44 191.0
36 TraesCS2B01G233300 chr7B 92.105 38 2 1 4358 4395 66003666 66003630 1.200000e-02 52.8
37 TraesCS2B01G233300 chr3A 79.286 140 16 5 5770 5898 668212335 668212472 1.140000e-12 86.1
38 TraesCS2B01G233300 chr5D 89.362 47 3 2 4358 4404 118203233 118203277 2.490000e-04 58.4
39 TraesCS2B01G233300 chr5A 100.000 30 0 0 4356 4385 138889227 138889256 8.950000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G233300 chr2B 231966312 231972702 6390 False 3972.00 11803 100.0000 1 6391 3 chr2B.!!$F5 6390
1 TraesCS2B01G233300 chr2D 165541248 165547417 6169 True 1820.76 5457 95.4936 256 6391 5 chr2D.!!$R1 6135
2 TraesCS2B01G233300 chr2A 185119503 185125770 6267 False 1751.00 3613 95.4332 253 6391 5 chr2A.!!$F1 6138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.108233 TACCATTGTTACGACCGGGC 60.108 55.000 6.32 0.0 0.00 6.13 F
48 49 0.179051 TGTTACGACCGGGCAAAAGT 60.179 50.000 8.76 0.0 0.00 2.66 F
902 933 0.464554 AGCAATAGCCTTTCCTCGCC 60.465 55.000 0.00 0.0 43.56 5.54 F
1467 1509 0.173255 TATCCCGAACCGTCGTTTCC 59.827 55.000 0.00 0.0 46.21 3.13 F
2125 2169 0.321671 CTCCAGGAGTTTTCCAGCGA 59.678 55.000 8.54 0.0 46.64 4.93 F
2549 2594 1.599071 TGCAGTCTGAAGCGTTTTGAG 59.401 47.619 3.32 0.0 0.00 3.02 F
4005 4091 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.0 0.00 3.16 F
4633 5065 0.817013 CAAGTTGCTTGGTGGTGTGT 59.183 50.000 1.23 0.0 37.77 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1333 1.134521 GTGGATCAAGTACGATGCCCA 60.135 52.381 0.00 9.69 33.12 5.36 R
1434 1476 1.761371 CGGGATAGGACTGGGATGGAA 60.761 57.143 0.00 0.00 0.00 3.53 R
2534 2579 0.581529 CACGCTCAAAACGCTTCAGA 59.418 50.000 0.00 0.00 0.00 3.27 R
3207 3252 5.468540 ACTGGGAAATTTTAACAGAAGCC 57.531 39.130 18.55 2.49 33.57 4.35 R
3984 4070 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26 R
4442 4872 1.081509 GCAATGAAAGAACGCCGCA 60.082 52.632 0.00 0.00 0.00 5.69 R
5176 5609 1.986882 AGTTCCTTGGCTTGAACCAG 58.013 50.000 9.61 0.00 41.82 4.00 R
6182 6691 1.044790 GGATTGGATGGTGGGGCTTG 61.045 60.000 0.00 0.00 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.810650 CAAATTCCGCGTACTAGCTCT 58.189 47.619 4.92 0.00 34.40 4.09
21 22 3.961182 CAAATTCCGCGTACTAGCTCTA 58.039 45.455 4.92 0.00 34.40 2.43
22 23 3.900388 AATTCCGCGTACTAGCTCTAG 57.100 47.619 4.92 2.55 39.04 2.43
24 25 3.459232 TTCCGCGTACTAGCTCTAGTA 57.541 47.619 4.92 11.59 43.98 1.82
35 36 6.374565 ACTAGCTCTAGTACCATTGTTACG 57.625 41.667 7.73 0.00 43.98 3.18
36 37 6.118170 ACTAGCTCTAGTACCATTGTTACGA 58.882 40.000 7.73 0.00 43.98 3.43
37 38 5.246145 AGCTCTAGTACCATTGTTACGAC 57.754 43.478 0.00 0.00 0.00 4.34
38 39 4.097589 AGCTCTAGTACCATTGTTACGACC 59.902 45.833 0.00 0.00 0.00 4.79
39 40 4.595116 CTCTAGTACCATTGTTACGACCG 58.405 47.826 0.00 0.00 0.00 4.79
40 41 2.660189 AGTACCATTGTTACGACCGG 57.340 50.000 0.00 0.00 0.00 5.28
41 42 1.205417 AGTACCATTGTTACGACCGGG 59.795 52.381 6.32 0.00 0.00 5.73
42 43 0.108233 TACCATTGTTACGACCGGGC 60.108 55.000 6.32 0.00 0.00 6.13
43 44 1.376166 CCATTGTTACGACCGGGCA 60.376 57.895 8.76 0.00 0.00 5.36
44 45 0.956410 CCATTGTTACGACCGGGCAA 60.956 55.000 8.76 0.00 0.00 4.52
45 46 0.875728 CATTGTTACGACCGGGCAAA 59.124 50.000 8.76 0.00 0.00 3.68
46 47 1.267261 CATTGTTACGACCGGGCAAAA 59.733 47.619 8.76 0.00 0.00 2.44
47 48 0.945813 TTGTTACGACCGGGCAAAAG 59.054 50.000 8.76 0.00 0.00 2.27
48 49 0.179051 TGTTACGACCGGGCAAAAGT 60.179 50.000 8.76 0.00 0.00 2.66
49 50 0.514255 GTTACGACCGGGCAAAAGTC 59.486 55.000 8.76 0.00 0.00 3.01
50 51 0.603439 TTACGACCGGGCAAAAGTCC 60.603 55.000 8.76 0.00 0.00 3.85
51 52 2.453379 TACGACCGGGCAAAAGTCCC 62.453 60.000 8.76 0.00 40.43 4.46
52 53 2.434774 GACCGGGCAAAAGTCCCT 59.565 61.111 0.00 0.00 41.69 4.20
53 54 1.971695 GACCGGGCAAAAGTCCCTG 60.972 63.158 0.00 0.00 41.69 4.45
54 55 2.406002 GACCGGGCAAAAGTCCCTGA 62.406 60.000 0.00 0.00 41.69 3.86
55 56 1.228429 CCGGGCAAAAGTCCCTGAA 60.228 57.895 0.00 0.00 41.69 3.02
56 57 1.524008 CCGGGCAAAAGTCCCTGAAC 61.524 60.000 0.00 0.00 41.69 3.18
57 58 0.821711 CGGGCAAAAGTCCCTGAACA 60.822 55.000 0.00 0.00 41.69 3.18
58 59 1.632589 GGGCAAAAGTCCCTGAACAT 58.367 50.000 0.00 0.00 40.66 2.71
59 60 1.273327 GGGCAAAAGTCCCTGAACATG 59.727 52.381 0.00 0.00 40.66 3.21
60 61 1.963515 GGCAAAAGTCCCTGAACATGT 59.036 47.619 0.00 0.00 0.00 3.21
61 62 2.365293 GGCAAAAGTCCCTGAACATGTT 59.635 45.455 11.78 11.78 0.00 2.71
62 63 3.383761 GCAAAAGTCCCTGAACATGTTG 58.616 45.455 17.58 1.98 0.00 3.33
63 64 3.799917 GCAAAAGTCCCTGAACATGTTGG 60.800 47.826 17.58 11.90 0.00 3.77
64 65 3.312736 AAAGTCCCTGAACATGTTGGT 57.687 42.857 17.58 0.00 0.00 3.67
65 66 3.312736 AAGTCCCTGAACATGTTGGTT 57.687 42.857 17.58 0.00 0.00 3.67
66 67 3.312736 AGTCCCTGAACATGTTGGTTT 57.687 42.857 17.58 1.71 0.00 3.27
67 68 4.447138 AGTCCCTGAACATGTTGGTTTA 57.553 40.909 17.58 0.00 0.00 2.01
68 69 4.142038 AGTCCCTGAACATGTTGGTTTAC 58.858 43.478 17.58 8.65 0.00 2.01
69 70 4.141251 AGTCCCTGAACATGTTGGTTTACT 60.141 41.667 17.58 10.76 0.00 2.24
70 71 4.215613 GTCCCTGAACATGTTGGTTTACTC 59.784 45.833 17.58 0.00 0.00 2.59
71 72 4.141287 CCCTGAACATGTTGGTTTACTCA 58.859 43.478 17.58 4.04 0.00 3.41
72 73 4.023193 CCCTGAACATGTTGGTTTACTCAC 60.023 45.833 17.58 0.00 0.00 3.51
73 74 4.578516 CCTGAACATGTTGGTTTACTCACA 59.421 41.667 17.58 2.48 0.00 3.58
74 75 5.067153 CCTGAACATGTTGGTTTACTCACAA 59.933 40.000 17.58 0.00 0.00 3.33
75 76 5.885881 TGAACATGTTGGTTTACTCACAAC 58.114 37.500 17.58 0.00 43.47 3.32
76 77 5.650266 TGAACATGTTGGTTTACTCACAACT 59.350 36.000 17.58 0.00 43.54 3.16
77 78 5.751243 ACATGTTGGTTTACTCACAACTC 57.249 39.130 0.00 0.00 43.54 3.01
78 79 5.189928 ACATGTTGGTTTACTCACAACTCA 58.810 37.500 0.00 0.00 43.54 3.41
79 80 5.827797 ACATGTTGGTTTACTCACAACTCAT 59.172 36.000 0.00 0.00 43.54 2.90
80 81 6.995686 ACATGTTGGTTTACTCACAACTCATA 59.004 34.615 0.00 0.00 43.54 2.15
81 82 7.500892 ACATGTTGGTTTACTCACAACTCATAA 59.499 33.333 0.00 0.00 43.54 1.90
82 83 7.867305 TGTTGGTTTACTCACAACTCATAAA 57.133 32.000 8.06 0.00 43.54 1.40
83 84 7.699566 TGTTGGTTTACTCACAACTCATAAAC 58.300 34.615 8.06 0.00 43.54 2.01
84 85 7.337184 TGTTGGTTTACTCACAACTCATAAACA 59.663 33.333 8.06 0.00 43.54 2.83
85 86 8.349983 GTTGGTTTACTCACAACTCATAAACAT 58.650 33.333 7.30 0.00 40.83 2.71
86 87 7.870826 TGGTTTACTCACAACTCATAAACATG 58.129 34.615 7.30 0.00 37.43 3.21
87 88 7.500892 TGGTTTACTCACAACTCATAAACATGT 59.499 33.333 0.00 0.00 37.43 3.21
88 89 8.349983 GGTTTACTCACAACTCATAAACATGTT 58.650 33.333 4.92 4.92 37.43 2.71
91 92 7.435068 ACTCACAACTCATAAACATGTTACC 57.565 36.000 12.39 0.00 0.00 2.85
92 93 6.995686 ACTCACAACTCATAAACATGTTACCA 59.004 34.615 12.39 0.51 0.00 3.25
93 94 7.665559 ACTCACAACTCATAAACATGTTACCAT 59.334 33.333 12.39 3.05 0.00 3.55
107 108 7.125536 CATGTTACCATGCATACACTAGATG 57.874 40.000 0.00 0.00 41.88 2.90
108 109 5.610398 TGTTACCATGCATACACTAGATGG 58.390 41.667 0.00 0.00 39.66 3.51
109 110 3.777106 ACCATGCATACACTAGATGGG 57.223 47.619 0.00 0.00 38.33 4.00
110 111 2.224621 ACCATGCATACACTAGATGGGC 60.225 50.000 0.00 0.00 38.33 5.36
111 112 2.430465 CATGCATACACTAGATGGGCC 58.570 52.381 0.00 0.00 0.00 5.80
112 113 1.506025 TGCATACACTAGATGGGCCA 58.494 50.000 9.61 9.61 0.00 5.36
113 114 2.057140 TGCATACACTAGATGGGCCAT 58.943 47.619 21.39 21.39 0.00 4.40
114 115 3.247162 TGCATACACTAGATGGGCCATA 58.753 45.455 21.26 3.49 0.00 2.74
115 116 3.650461 TGCATACACTAGATGGGCCATAA 59.350 43.478 21.26 10.01 0.00 1.90
116 117 4.289410 TGCATACACTAGATGGGCCATAAT 59.711 41.667 21.26 13.93 0.00 1.28
117 118 5.222109 TGCATACACTAGATGGGCCATAATT 60.222 40.000 21.26 10.83 0.00 1.40
118 119 5.711976 GCATACACTAGATGGGCCATAATTT 59.288 40.000 21.26 8.21 0.00 1.82
119 120 6.349611 GCATACACTAGATGGGCCATAATTTG 60.350 42.308 21.26 16.37 0.00 2.32
120 121 3.891366 ACACTAGATGGGCCATAATTTGC 59.109 43.478 21.26 5.69 0.00 3.68
121 122 3.890756 CACTAGATGGGCCATAATTTGCA 59.109 43.478 21.26 0.00 0.00 4.08
122 123 4.341806 CACTAGATGGGCCATAATTTGCAA 59.658 41.667 21.26 0.00 0.00 4.08
123 124 5.011329 CACTAGATGGGCCATAATTTGCAAT 59.989 40.000 21.26 0.00 0.00 3.56
124 125 5.603813 ACTAGATGGGCCATAATTTGCAATT 59.396 36.000 21.26 0.00 0.00 2.32
125 126 6.782000 ACTAGATGGGCCATAATTTGCAATTA 59.218 34.615 21.26 1.93 0.00 1.40
126 127 6.497624 AGATGGGCCATAATTTGCAATTAA 57.502 33.333 21.26 0.00 0.00 1.40
127 128 6.527423 AGATGGGCCATAATTTGCAATTAAG 58.473 36.000 21.26 0.00 0.00 1.85
128 129 5.946942 TGGGCCATAATTTGCAATTAAGA 57.053 34.783 0.00 0.00 0.00 2.10
129 130 6.497624 TGGGCCATAATTTGCAATTAAGAT 57.502 33.333 0.00 0.00 0.00 2.40
130 131 6.289834 TGGGCCATAATTTGCAATTAAGATG 58.710 36.000 0.00 2.38 0.00 2.90
131 132 6.126825 TGGGCCATAATTTGCAATTAAGATGT 60.127 34.615 0.00 0.00 0.00 3.06
132 133 7.070447 TGGGCCATAATTTGCAATTAAGATGTA 59.930 33.333 0.00 0.00 0.00 2.29
133 134 7.384932 GGGCCATAATTTGCAATTAAGATGTAC 59.615 37.037 4.39 0.00 0.00 2.90
134 135 8.143835 GGCCATAATTTGCAATTAAGATGTACT 58.856 33.333 0.00 0.00 0.00 2.73
135 136 9.185192 GCCATAATTTGCAATTAAGATGTACTC 57.815 33.333 0.00 0.00 0.00 2.59
136 137 9.683069 CCATAATTTGCAATTAAGATGTACTCC 57.317 33.333 0.00 0.00 0.00 3.85
137 138 9.683069 CATAATTTGCAATTAAGATGTACTCCC 57.317 33.333 0.00 0.00 0.00 4.30
138 139 7.961326 AATTTGCAATTAAGATGTACTCCCT 57.039 32.000 0.00 0.00 0.00 4.20
139 140 7.573968 ATTTGCAATTAAGATGTACTCCCTC 57.426 36.000 0.00 0.00 0.00 4.30
140 141 5.036117 TGCAATTAAGATGTACTCCCTCC 57.964 43.478 0.00 0.00 0.00 4.30
141 142 4.058817 GCAATTAAGATGTACTCCCTCCG 58.941 47.826 0.00 0.00 0.00 4.63
142 143 4.443034 GCAATTAAGATGTACTCCCTCCGT 60.443 45.833 0.00 0.00 0.00 4.69
143 144 5.290386 CAATTAAGATGTACTCCCTCCGTC 58.710 45.833 0.00 0.00 0.00 4.79
144 145 1.777941 AAGATGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
145 146 0.629596 AGATGTACTCCCTCCGTCCA 59.370 55.000 0.00 0.00 0.00 4.02
146 147 1.006758 AGATGTACTCCCTCCGTCCAA 59.993 52.381 0.00 0.00 0.00 3.53
147 148 1.829222 GATGTACTCCCTCCGTCCAAA 59.171 52.381 0.00 0.00 0.00 3.28
148 149 1.719529 TGTACTCCCTCCGTCCAAAA 58.280 50.000 0.00 0.00 0.00 2.44
149 150 2.048601 TGTACTCCCTCCGTCCAAAAA 58.951 47.619 0.00 0.00 0.00 1.94
150 151 2.640826 TGTACTCCCTCCGTCCAAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
151 152 3.839490 TGTACTCCCTCCGTCCAAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
152 153 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
153 154 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
154 155 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
155 156 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
156 157 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
157 158 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
158 159 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
159 160 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
160 161 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
161 162 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
162 163 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
163 164 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
164 165 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
165 166 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
166 167 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
167 168 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
168 169 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
169 170 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
212 213 7.948278 AACTAAAATACGTCTAGATGCATCC 57.052 36.000 23.06 6.84 0.00 3.51
213 214 6.456501 ACTAAAATACGTCTAGATGCATCCC 58.543 40.000 23.06 7.99 0.00 3.85
214 215 3.963428 AATACGTCTAGATGCATCCCC 57.037 47.619 23.06 7.64 0.00 4.81
215 216 2.677542 TACGTCTAGATGCATCCCCT 57.322 50.000 23.06 7.62 0.00 4.79
216 217 1.794714 ACGTCTAGATGCATCCCCTT 58.205 50.000 23.06 7.24 0.00 3.95
217 218 2.119495 ACGTCTAGATGCATCCCCTTT 58.881 47.619 23.06 6.85 0.00 3.11
218 219 2.505819 ACGTCTAGATGCATCCCCTTTT 59.494 45.455 23.06 6.10 0.00 2.27
219 220 3.709653 ACGTCTAGATGCATCCCCTTTTA 59.290 43.478 23.06 6.97 0.00 1.52
220 221 4.348168 ACGTCTAGATGCATCCCCTTTTAT 59.652 41.667 23.06 4.58 0.00 1.40
221 222 5.163195 ACGTCTAGATGCATCCCCTTTTATT 60.163 40.000 23.06 3.84 0.00 1.40
222 223 6.042781 ACGTCTAGATGCATCCCCTTTTATTA 59.957 38.462 23.06 4.84 0.00 0.98
223 224 6.934645 CGTCTAGATGCATCCCCTTTTATTAA 59.065 38.462 23.06 0.00 0.00 1.40
224 225 7.607991 CGTCTAGATGCATCCCCTTTTATTAAT 59.392 37.037 23.06 2.35 0.00 1.40
225 226 9.301897 GTCTAGATGCATCCCCTTTTATTAATT 57.698 33.333 23.06 1.91 0.00 1.40
226 227 9.881773 TCTAGATGCATCCCCTTTTATTAATTT 57.118 29.630 23.06 1.25 0.00 1.82
229 230 8.991275 AGATGCATCCCCTTTTATTAATTTTGA 58.009 29.630 23.06 0.00 0.00 2.69
230 231 9.783081 GATGCATCCCCTTTTATTAATTTTGAT 57.217 29.630 16.23 0.00 0.00 2.57
231 232 8.961294 TGCATCCCCTTTTATTAATTTTGATG 57.039 30.769 0.00 0.00 0.00 3.07
232 233 8.766476 TGCATCCCCTTTTATTAATTTTGATGA 58.234 29.630 0.00 0.00 0.00 2.92
233 234 9.045223 GCATCCCCTTTTATTAATTTTGATGAC 57.955 33.333 0.00 0.00 0.00 3.06
237 238 9.942850 CCCCTTTTATTAATTTTGATGACAAGT 57.057 29.630 0.00 0.00 37.32 3.16
248 249 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
249 250 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
250 251 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
251 252 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
252 253 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
253 254 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
254 255 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
356 358 5.086598 AGCCCTTGGATCTAGAGAGTAAT 57.913 43.478 0.00 0.00 0.00 1.89
358 360 6.810500 AGCCCTTGGATCTAGAGAGTAATAT 58.189 40.000 0.00 0.00 0.00 1.28
361 363 8.379331 GCCCTTGGATCTAGAGAGTAATATTTT 58.621 37.037 0.00 0.00 0.00 1.82
409 411 8.514330 AGTTGGTTTAATCAAACTCTAACACA 57.486 30.769 1.09 0.00 43.06 3.72
474 502 9.180678 GACGTTCATGAGAAATAAAAACACAAT 57.819 29.630 0.00 0.00 35.08 2.71
535 563 5.767816 ACAATTTAGACAAAGTTCGCCTT 57.232 34.783 0.00 0.00 33.79 4.35
536 564 5.519722 ACAATTTAGACAAAGTTCGCCTTG 58.480 37.500 0.00 0.00 32.32 3.61
537 565 5.298276 ACAATTTAGACAAAGTTCGCCTTGA 59.702 36.000 0.00 0.00 32.32 3.02
540 568 1.134220 AGACAAAGTTCGCCTTGACCA 60.134 47.619 0.00 0.00 32.32 4.02
551 579 1.882623 GCCTTGACCAGTTCTTCCTTG 59.117 52.381 0.00 0.00 0.00 3.61
555 583 5.316987 CCTTGACCAGTTCTTCCTTGTTAT 58.683 41.667 0.00 0.00 0.00 1.89
571 601 9.868277 TTCCTTGTTATAAATAGCATGGTTTTG 57.132 29.630 1.12 0.00 38.80 2.44
573 603 9.651913 CCTTGTTATAAATAGCATGGTTTTGTT 57.348 29.630 1.12 0.00 35.49 2.83
626 656 4.614284 CGTGTACACCAAGAACTAGTAACG 59.386 45.833 20.11 0.00 0.00 3.18
659 689 2.947652 CACTTGGATGGACATTAGCTGG 59.052 50.000 0.00 0.00 0.00 4.85
675 706 7.603024 ACATTAGCTGGTGAAGTCTAAACTAAC 59.397 37.037 0.00 0.00 33.48 2.34
702 733 3.983044 AAATGCCGTTCTAGAACTCCT 57.017 42.857 28.30 13.24 39.08 3.69
708 739 4.222145 TGCCGTTCTAGAACTCCTAATTGT 59.778 41.667 28.30 0.00 39.08 2.71
724 755 6.430000 TCCTAATTGTAGAACCTGAAGCAAAC 59.570 38.462 0.00 0.00 0.00 2.93
750 781 0.894141 TCCCACGCCCATGAAATTTG 59.106 50.000 0.00 0.00 0.00 2.32
771 802 1.551145 GCAAAAAGCCGTTCGAAACA 58.449 45.000 0.00 0.00 37.23 2.83
815 846 4.770540 CCATCCCATGTGGCAACT 57.229 55.556 0.00 0.00 37.61 3.16
902 933 0.464554 AGCAATAGCCTTTCCTCGCC 60.465 55.000 0.00 0.00 43.56 5.54
1023 1054 1.367840 GGCCATATCGTCGCTTCCT 59.632 57.895 0.00 0.00 0.00 3.36
1206 1238 1.890174 GTATGGTTGCTTGTGGCCC 59.110 57.895 0.00 0.00 40.92 5.80
1245 1277 1.927527 ACCCCTCTGCATCCAGCTT 60.928 57.895 0.00 0.00 45.94 3.74
1372 1414 1.692519 GAGCGGGGTAATATGACACCT 59.307 52.381 9.99 0.00 41.15 4.00
1434 1476 1.448497 CGGGGTAATATGGCACCGT 59.552 57.895 11.14 0.00 45.73 4.83
1467 1509 0.173255 TATCCCGAACCGTCGTTTCC 59.827 55.000 0.00 0.00 46.21 3.13
1474 1516 0.942252 AACCGTCGTTTCCTTTGAGC 59.058 50.000 0.00 0.00 0.00 4.26
1498 1540 3.382832 CCGGGCGTCCTGAACTCT 61.383 66.667 3.66 0.00 29.82 3.24
1554 1596 2.471743 GTCAGCACGCCTTATACGAATC 59.528 50.000 0.00 0.00 0.00 2.52
1637 1681 4.092821 TGCGATAATCACCTTTTGAACTCG 59.907 41.667 0.00 0.00 37.92 4.18
1647 1691 9.006939 ATCACCTTTTGAACTCGTTTTGTACGT 62.007 37.037 0.00 0.00 43.70 3.57
1681 1725 6.237901 AGTTATAGTTCCTGTTGTGCATTCA 58.762 36.000 0.00 0.00 0.00 2.57
1690 1734 5.414454 TCCTGTTGTGCATTCAAGGTAATAC 59.586 40.000 0.00 0.00 0.00 1.89
1692 1736 4.757657 TGTTGTGCATTCAAGGTAATACGT 59.242 37.500 0.00 0.00 0.00 3.57
1707 1751 5.063060 GGTAATACGTCATCAACCTGACAAC 59.937 44.000 0.00 0.00 44.69 3.32
1907 1951 5.124457 AGCGATGCAAACTAAGACATTGAAT 59.876 36.000 0.00 0.00 0.00 2.57
1987 2031 3.099267 ACAGTGTCTGAGTTAGTGTGC 57.901 47.619 3.70 0.00 35.18 4.57
2111 2155 3.455327 CACATGCAGTCTATGACTCCAG 58.545 50.000 0.00 0.00 41.37 3.86
2118 2162 4.323104 GCAGTCTATGACTCCAGGAGTTTT 60.323 45.833 23.78 15.65 43.53 2.43
2125 2169 0.321671 CTCCAGGAGTTTTCCAGCGA 59.678 55.000 8.54 0.00 46.64 4.93
2174 2219 9.984190 TTAGGCCGATTTATAAAAACTTTTGTT 57.016 25.926 1.21 0.00 45.94 2.83
2273 2318 3.604582 AGGTCATGCTGCTAAACTCTTC 58.395 45.455 0.00 0.00 0.00 2.87
2314 2359 4.870123 TTTGGATTGGTTTCTGTGATGG 57.130 40.909 0.00 0.00 0.00 3.51
2349 2394 7.549147 AGTGTTTCAGTCTGTTAATAGGGTA 57.451 36.000 0.00 0.00 0.00 3.69
2359 2404 8.714906 AGTCTGTTAATAGGGTATTTGTGCTAT 58.285 33.333 0.00 0.00 0.00 2.97
2491 2536 7.054124 TGAATTATGGGTATCAGTCCAACTTC 58.946 38.462 0.00 0.00 36.54 3.01
2534 2579 2.607187 GTGTAGCAACTACGATGCAGT 58.393 47.619 0.00 0.00 46.22 4.40
2549 2594 1.599071 TGCAGTCTGAAGCGTTTTGAG 59.401 47.619 3.32 0.00 0.00 3.02
2582 2627 4.439305 TGCACATAAAGAGAAATGGTGC 57.561 40.909 0.00 0.00 34.04 5.01
2620 2665 9.713740 CAAGAGAAGCTTAATCATGTGAATTAC 57.286 33.333 0.00 0.00 34.31 1.89
2957 3002 3.748083 AGCAATACAGGTGCATATCAGG 58.252 45.455 0.00 0.00 44.74 3.86
3331 3376 6.535508 TGTTATTTGGTACTTGTTTGTTTGCC 59.464 34.615 0.00 0.00 0.00 4.52
3782 3859 4.718940 AATTTTCTAGAATTGGGCACGG 57.281 40.909 5.89 0.00 0.00 4.94
3804 3881 5.444613 CGGAAATAGTGTGAGTGAAATGTCG 60.445 44.000 0.00 0.00 0.00 4.35
3831 3908 9.927081 ATATTACCCATCTCTTCTTCACAAAAT 57.073 29.630 0.00 0.00 0.00 1.82
3879 3965 5.464168 CCAAAGCAAGGACAATGAGTTAAG 58.536 41.667 0.00 0.00 0.00 1.85
3893 3979 9.047947 ACAATGAGTTAAGTAATTACTCCCTCT 57.952 33.333 24.60 18.17 37.97 3.69
3894 3980 9.319143 CAATGAGTTAAGTAATTACTCCCTCTG 57.681 37.037 24.60 17.61 37.97 3.35
3899 3985 5.695424 AAGTAATTACTCCCTCTGTTCCC 57.305 43.478 18.28 0.00 34.99 3.97
3905 3991 6.652205 ATTACTCCCTCTGTTCCCAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
3906 3992 6.652205 TTACTCCCTCTGTTCCCAAATAAT 57.348 37.500 0.00 0.00 0.00 1.28
3909 3995 5.222337 ACTCCCTCTGTTCCCAAATAATTGT 60.222 40.000 0.00 0.00 34.60 2.71
3912 3998 5.716703 CCCTCTGTTCCCAAATAATTGTCTT 59.283 40.000 0.00 0.00 34.60 3.01
3913 3999 6.211384 CCCTCTGTTCCCAAATAATTGTCTTT 59.789 38.462 0.00 0.00 34.60 2.52
3914 4000 7.315890 CCTCTGTTCCCAAATAATTGTCTTTC 58.684 38.462 0.00 0.00 34.60 2.62
3915 4001 7.177392 CCTCTGTTCCCAAATAATTGTCTTTCT 59.823 37.037 0.00 0.00 34.60 2.52
3916 4002 9.231297 CTCTGTTCCCAAATAATTGTCTTTCTA 57.769 33.333 0.00 0.00 34.60 2.10
3917 4003 9.231297 TCTGTTCCCAAATAATTGTCTTTCTAG 57.769 33.333 0.00 0.00 34.60 2.43
3918 4004 7.826690 TGTTCCCAAATAATTGTCTTTCTAGC 58.173 34.615 0.00 0.00 34.60 3.42
3919 4005 7.093945 TGTTCCCAAATAATTGTCTTTCTAGCC 60.094 37.037 0.00 0.00 34.60 3.93
3920 4006 6.489603 TCCCAAATAATTGTCTTTCTAGCCA 58.510 36.000 0.00 0.00 34.60 4.75
3921 4007 7.125391 TCCCAAATAATTGTCTTTCTAGCCAT 58.875 34.615 0.00 0.00 34.60 4.40
3924 4010 8.348507 CCAAATAATTGTCTTTCTAGCCATCTC 58.651 37.037 0.00 0.00 34.60 2.75
3926 4012 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
3927 4013 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
3929 4015 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
3930 4016 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
3931 4017 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
3933 4019 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
3934 4020 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
3935 4021 6.560003 TTCTAGCCATCTCAAATGGACTAA 57.440 37.500 8.23 0.00 41.64 2.24
3936 4022 6.560003 TCTAGCCATCTCAAATGGACTAAA 57.440 37.500 8.23 0.00 41.64 1.85
3937 4023 6.349300 TCTAGCCATCTCAAATGGACTAAAC 58.651 40.000 8.23 0.00 41.64 2.01
3938 4024 4.922206 AGCCATCTCAAATGGACTAAACA 58.078 39.130 8.23 0.00 41.64 2.83
3940 4026 6.662755 AGCCATCTCAAATGGACTAAACATA 58.337 36.000 8.23 0.00 41.64 2.29
3942 4028 6.511767 GCCATCTCAAATGGACTAAACATACG 60.512 42.308 8.23 0.00 41.64 3.06
3943 4029 6.017934 CCATCTCAAATGGACTAAACATACGG 60.018 42.308 0.00 0.00 41.64 4.02
3945 4031 6.884832 TCTCAAATGGACTAAACATACGGAT 58.115 36.000 0.00 0.00 0.00 4.18
3946 4032 6.761242 TCTCAAATGGACTAAACATACGGATG 59.239 38.462 5.94 5.94 39.16 3.51
3948 4034 7.557724 TCAAATGGACTAAACATACGGATGTA 58.442 34.615 15.10 0.00 45.93 2.29
3949 4035 8.208224 TCAAATGGACTAAACATACGGATGTAT 58.792 33.333 15.10 0.00 45.93 2.29
3966 4052 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
3968 4054 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
3969 4055 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
3975 4061 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
3976 4062 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
3977 4063 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
3988 4074 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3989 4075 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3992 4078 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3994 4080 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3996 4082 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3997 4083 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3998 4084 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3999 4085 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4000 4086 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4001 4087 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4002 4088 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4003 4089 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4004 4090 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4005 4091 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4006 4092 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4007 4093 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4008 4094 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4010 4096 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4011 4097 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4012 4098 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4015 4101 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4017 4103 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4018 4104 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4019 4105 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4022 4108 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4023 4109 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4024 4110 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4026 4112 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
4442 4872 2.039084 CCAGAAGTGCTTTAGGACCACT 59.961 50.000 0.00 0.00 41.26 4.00
4471 4901 6.032094 CGTTCTTTCATTGCAAAGCATAGAT 58.968 36.000 1.71 0.00 38.76 1.98
4529 4959 6.183361 TGCTGTATTGACCATCCCCAATATTA 60.183 38.462 0.00 0.00 37.51 0.98
4559 4989 5.394115 GGGTTGAGGTTGTAAATTATGCTGG 60.394 44.000 0.00 0.00 0.00 4.85
4633 5065 0.817013 CAAGTTGCTTGGTGGTGTGT 59.183 50.000 1.23 0.00 37.77 3.72
4634 5066 1.102978 AAGTTGCTTGGTGGTGTGTC 58.897 50.000 0.00 0.00 0.00 3.67
4883 5316 7.834881 TGTGTTTCCTCTTCTCTCTTTACTA 57.165 36.000 0.00 0.00 0.00 1.82
4912 5345 7.000472 TCTGAATGACCAGAGAAAAGAACAAT 59.000 34.615 0.00 0.00 38.18 2.71
5041 5474 5.550290 TGAAGTACATCAGACATTTCAGCA 58.450 37.500 0.00 0.00 0.00 4.41
5176 5609 2.401351 ACCGCAACTTACTCTCGAAAC 58.599 47.619 0.00 0.00 0.00 2.78
5241 5674 9.275572 AGGTAATCTCTTATACCAGTTTTACCA 57.724 33.333 16.69 0.00 43.32 3.25
5471 5904 5.854010 TCTGGATAGCGTTGAGAACTATT 57.146 39.130 0.00 0.00 0.00 1.73
5497 5930 1.028868 ATCTTTGGCTGCTCTTCGCC 61.029 55.000 0.00 0.00 46.46 5.54
5590 6023 6.037786 TCTCCTTCTATGTGTTCGAATGTT 57.962 37.500 0.00 0.00 0.00 2.71
5648 6082 6.384015 AGAGGTATCTGGTGATGAATGTTACA 59.616 38.462 0.00 0.00 33.30 2.41
5649 6083 6.957631 AGGTATCTGGTGATGAATGTTACAA 58.042 36.000 0.00 0.00 34.32 2.41
5650 6084 7.050377 AGGTATCTGGTGATGAATGTTACAAG 58.950 38.462 0.00 0.00 34.32 3.16
5651 6085 7.047891 GGTATCTGGTGATGAATGTTACAAGA 58.952 38.462 0.00 0.00 34.32 3.02
5652 6086 7.716998 GGTATCTGGTGATGAATGTTACAAGAT 59.283 37.037 0.00 0.00 37.52 2.40
5653 6087 6.990341 TCTGGTGATGAATGTTACAAGATG 57.010 37.500 0.00 0.00 0.00 2.90
5654 6088 6.710278 TCTGGTGATGAATGTTACAAGATGA 58.290 36.000 0.00 0.00 0.00 2.92
5655 6089 6.820152 TCTGGTGATGAATGTTACAAGATGAG 59.180 38.462 0.00 0.00 0.00 2.90
5656 6090 6.710278 TGGTGATGAATGTTACAAGATGAGA 58.290 36.000 0.00 0.00 0.00 3.27
5696 6133 6.712998 TGGTGAAAAAGAAATCATTCCGACTA 59.287 34.615 0.00 0.00 36.12 2.59
5716 6153 7.221067 CCGACTAGTGTTGTTTATCTGAATCTC 59.779 40.741 0.00 0.00 0.00 2.75
5786 6225 1.865865 AATAGATACGGGTGCAAGCG 58.134 50.000 0.00 0.00 33.03 4.68
5803 6242 2.282745 GGCAGCCTGCTTTGTCCT 60.283 61.111 17.55 0.00 44.28 3.85
5846 6341 8.092687 AGCTCTAAAATTTGTTCATCATTTGCT 58.907 29.630 0.00 0.00 0.00 3.91
5882 6388 1.941668 GCTATTGTCCGCTAGCCCATC 60.942 57.143 9.66 0.00 35.40 3.51
5886 6392 4.853142 TCCGCTAGCCCATCCCGT 62.853 66.667 9.66 0.00 0.00 5.28
5894 6400 2.785425 GCCCATCCCGTTTGCATCC 61.785 63.158 0.00 0.00 0.00 3.51
5942 6448 6.425114 CGGATCATCAGAAGTACCCAAATAAG 59.575 42.308 0.00 0.00 0.00 1.73
6004 6511 4.142534 CCAAGTAGATGTGTGAATGGCTTG 60.143 45.833 0.00 0.00 0.00 4.01
6009 6516 2.772568 TGTGTGAATGGCTTGAAACG 57.227 45.000 0.00 0.00 0.00 3.60
6010 6517 2.020720 TGTGTGAATGGCTTGAAACGT 58.979 42.857 0.00 0.00 0.00 3.99
6017 6524 0.948678 TGGCTTGAAACGTTACCAGC 59.051 50.000 14.21 14.21 0.00 4.85
6025 6532 5.351233 TGAAACGTTACCAGCAGTATTTG 57.649 39.130 0.00 0.00 0.00 2.32
6034 6541 7.223971 CGTTACCAGCAGTATTTGAAGCTATAA 59.776 37.037 0.00 0.00 35.19 0.98
6086 6594 3.431207 CCCATGAAGGACCAAAATGCATC 60.431 47.826 0.00 0.00 41.22 3.91
6110 6618 5.027460 TCTACAGTTATTACAGGGCCAGAA 58.973 41.667 6.18 0.00 0.00 3.02
6182 6691 1.135859 CCACAAATCACAAGCGCTCTC 60.136 52.381 12.06 0.00 0.00 3.20
6191 6700 3.909086 AAGCGCTCTCAAGCCCCAC 62.909 63.158 12.06 0.00 46.34 4.61
6279 6788 4.215908 ACAGATAAGACTCGGATAAGGCA 58.784 43.478 0.00 0.00 0.00 4.75
6369 6878 9.333724 GAGATAACACCGGGAATTTCTTATAAA 57.666 33.333 6.32 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.810650 AGAGCTAGTACGCGGAATTTG 58.189 47.619 12.47 0.00 34.40 2.32
1 2 3.631227 ACTAGAGCTAGTACGCGGAATTT 59.369 43.478 12.47 0.00 43.98 1.82
3 4 2.848691 ACTAGAGCTAGTACGCGGAAT 58.151 47.619 12.47 2.60 43.98 3.01
4 5 2.322355 ACTAGAGCTAGTACGCGGAA 57.678 50.000 12.47 0.00 43.98 4.30
11 12 7.225538 GTCGTAACAATGGTACTAGAGCTAGTA 59.774 40.741 12.18 12.18 43.98 1.82
13 14 6.428799 GTCGTAACAATGGTACTAGAGCTAG 58.571 44.000 6.89 3.06 39.04 3.42
14 15 5.297776 GGTCGTAACAATGGTACTAGAGCTA 59.702 44.000 6.89 0.00 0.00 3.32
15 16 4.097589 GGTCGTAACAATGGTACTAGAGCT 59.902 45.833 6.89 0.00 0.00 4.09
16 17 4.357996 GGTCGTAACAATGGTACTAGAGC 58.642 47.826 6.89 3.65 0.00 4.09
17 18 4.497006 CCGGTCGTAACAATGGTACTAGAG 60.497 50.000 6.89 0.00 0.00 2.43
18 19 3.378112 CCGGTCGTAACAATGGTACTAGA 59.622 47.826 6.89 0.00 0.00 2.43
19 20 3.489738 CCCGGTCGTAACAATGGTACTAG 60.490 52.174 6.89 0.00 0.00 2.57
20 21 2.426738 CCCGGTCGTAACAATGGTACTA 59.573 50.000 6.89 0.00 0.00 1.82
21 22 1.205417 CCCGGTCGTAACAATGGTACT 59.795 52.381 6.89 0.00 0.00 2.73
22 23 1.643880 CCCGGTCGTAACAATGGTAC 58.356 55.000 0.00 0.00 0.00 3.34
23 24 0.108233 GCCCGGTCGTAACAATGGTA 60.108 55.000 0.00 0.00 0.00 3.25
24 25 1.376295 GCCCGGTCGTAACAATGGT 60.376 57.895 0.00 0.00 0.00 3.55
25 26 0.956410 TTGCCCGGTCGTAACAATGG 60.956 55.000 0.00 0.00 0.00 3.16
26 27 0.875728 TTTGCCCGGTCGTAACAATG 59.124 50.000 0.00 0.00 0.00 2.82
27 28 1.538075 CTTTTGCCCGGTCGTAACAAT 59.462 47.619 0.00 0.00 0.00 2.71
28 29 0.945813 CTTTTGCCCGGTCGTAACAA 59.054 50.000 0.00 0.00 0.00 2.83
29 30 0.179051 ACTTTTGCCCGGTCGTAACA 60.179 50.000 0.00 0.00 0.00 2.41
30 31 0.514255 GACTTTTGCCCGGTCGTAAC 59.486 55.000 0.00 0.00 0.00 2.50
31 32 0.603439 GGACTTTTGCCCGGTCGTAA 60.603 55.000 0.00 0.00 0.00 3.18
32 33 1.004679 GGACTTTTGCCCGGTCGTA 60.005 57.895 0.00 0.00 0.00 3.43
33 34 2.281276 GGACTTTTGCCCGGTCGT 60.281 61.111 0.00 0.00 0.00 4.34
34 35 3.053896 GGGACTTTTGCCCGGTCG 61.054 66.667 0.00 0.00 35.50 4.79
39 40 1.273327 CATGTTCAGGGACTTTTGCCC 59.727 52.381 0.00 0.00 46.40 5.36
40 41 1.963515 ACATGTTCAGGGACTTTTGCC 59.036 47.619 0.00 0.00 34.60 4.52
41 42 3.383761 CAACATGTTCAGGGACTTTTGC 58.616 45.455 8.48 0.00 34.60 3.68
42 43 3.384467 ACCAACATGTTCAGGGACTTTTG 59.616 43.478 17.78 0.28 34.60 2.44
43 44 3.642141 ACCAACATGTTCAGGGACTTTT 58.358 40.909 17.78 0.00 34.60 2.27
44 45 3.312736 ACCAACATGTTCAGGGACTTT 57.687 42.857 17.78 0.00 34.60 2.66
45 46 3.312736 AACCAACATGTTCAGGGACTT 57.687 42.857 17.78 2.82 34.60 3.01
46 47 3.312736 AAACCAACATGTTCAGGGACT 57.687 42.857 17.78 4.35 43.88 3.85
47 48 4.142038 AGTAAACCAACATGTTCAGGGAC 58.858 43.478 17.78 12.27 0.00 4.46
48 49 4.141367 TGAGTAAACCAACATGTTCAGGGA 60.141 41.667 17.78 2.43 0.00 4.20
49 50 4.023193 GTGAGTAAACCAACATGTTCAGGG 60.023 45.833 16.88 14.04 0.00 4.45
50 51 4.578516 TGTGAGTAAACCAACATGTTCAGG 59.421 41.667 8.48 10.75 0.00 3.86
51 52 5.749596 TGTGAGTAAACCAACATGTTCAG 57.250 39.130 8.48 5.84 0.00 3.02
52 53 5.650266 AGTTGTGAGTAAACCAACATGTTCA 59.350 36.000 8.48 0.00 40.64 3.18
53 54 6.131544 AGTTGTGAGTAAACCAACATGTTC 57.868 37.500 8.48 0.00 40.64 3.18
54 55 5.650266 TGAGTTGTGAGTAAACCAACATGTT 59.350 36.000 4.92 4.92 40.64 2.71
55 56 5.189928 TGAGTTGTGAGTAAACCAACATGT 58.810 37.500 0.00 0.00 40.64 3.21
56 57 5.749596 TGAGTTGTGAGTAAACCAACATG 57.250 39.130 0.00 0.00 40.64 3.21
57 58 8.349983 GTTTATGAGTTGTGAGTAAACCAACAT 58.650 33.333 0.00 0.00 40.64 2.71
58 59 7.337184 TGTTTATGAGTTGTGAGTAAACCAACA 59.663 33.333 0.00 0.00 40.64 3.33
59 60 7.699566 TGTTTATGAGTTGTGAGTAAACCAAC 58.300 34.615 0.00 0.00 38.94 3.77
60 61 7.867305 TGTTTATGAGTTGTGAGTAAACCAA 57.133 32.000 0.00 0.00 35.47 3.67
61 62 7.500892 ACATGTTTATGAGTTGTGAGTAAACCA 59.499 33.333 0.00 0.00 37.73 3.67
62 63 7.871853 ACATGTTTATGAGTTGTGAGTAAACC 58.128 34.615 0.00 0.00 37.73 3.27
65 66 8.995220 GGTAACATGTTTATGAGTTGTGAGTAA 58.005 33.333 17.78 0.00 37.73 2.24
66 67 8.151596 TGGTAACATGTTTATGAGTTGTGAGTA 58.848 33.333 17.78 0.00 46.17 2.59
67 68 6.995686 TGGTAACATGTTTATGAGTTGTGAGT 59.004 34.615 17.78 0.00 46.17 3.41
68 69 7.433708 TGGTAACATGTTTATGAGTTGTGAG 57.566 36.000 17.78 0.00 46.17 3.51
86 87 4.997395 CCCATCTAGTGTATGCATGGTAAC 59.003 45.833 10.16 0.00 33.38 2.50
87 88 4.504864 GCCCATCTAGTGTATGCATGGTAA 60.505 45.833 10.16 0.00 33.38 2.85
88 89 3.007940 GCCCATCTAGTGTATGCATGGTA 59.992 47.826 10.16 0.00 33.38 3.25
89 90 2.224621 GCCCATCTAGTGTATGCATGGT 60.225 50.000 10.16 0.00 33.38 3.55
90 91 2.430465 GCCCATCTAGTGTATGCATGG 58.570 52.381 10.16 0.00 34.80 3.66
91 92 2.224597 TGGCCCATCTAGTGTATGCATG 60.225 50.000 10.16 0.00 0.00 4.06
92 93 2.057140 TGGCCCATCTAGTGTATGCAT 58.943 47.619 3.79 3.79 0.00 3.96
93 94 1.506025 TGGCCCATCTAGTGTATGCA 58.494 50.000 0.00 0.00 0.00 3.96
94 95 2.867109 ATGGCCCATCTAGTGTATGC 57.133 50.000 0.00 0.00 0.00 3.14
95 96 6.349611 GCAAATTATGGCCCATCTAGTGTATG 60.350 42.308 0.00 0.00 0.00 2.39
96 97 5.711976 GCAAATTATGGCCCATCTAGTGTAT 59.288 40.000 0.00 0.00 0.00 2.29
97 98 5.070001 GCAAATTATGGCCCATCTAGTGTA 58.930 41.667 0.00 0.00 0.00 2.90
98 99 3.891366 GCAAATTATGGCCCATCTAGTGT 59.109 43.478 0.00 0.00 0.00 3.55
99 100 3.890756 TGCAAATTATGGCCCATCTAGTG 59.109 43.478 0.00 0.00 0.00 2.74
100 101 4.183223 TGCAAATTATGGCCCATCTAGT 57.817 40.909 0.00 0.00 0.00 2.57
101 102 5.733620 ATTGCAAATTATGGCCCATCTAG 57.266 39.130 1.71 0.00 0.00 2.43
102 103 7.508636 TCTTAATTGCAAATTATGGCCCATCTA 59.491 33.333 1.71 0.00 0.00 1.98
103 104 6.327104 TCTTAATTGCAAATTATGGCCCATCT 59.673 34.615 1.71 0.00 0.00 2.90
104 105 6.523840 TCTTAATTGCAAATTATGGCCCATC 58.476 36.000 1.71 0.00 0.00 3.51
105 106 6.497624 TCTTAATTGCAAATTATGGCCCAT 57.502 33.333 1.71 0.00 0.00 4.00
106 107 5.946942 TCTTAATTGCAAATTATGGCCCA 57.053 34.783 1.71 0.00 0.00 5.36
107 108 6.290605 ACATCTTAATTGCAAATTATGGCCC 58.709 36.000 1.71 0.00 0.00 5.80
108 109 8.143835 AGTACATCTTAATTGCAAATTATGGCC 58.856 33.333 1.71 0.00 0.00 5.36
109 110 9.185192 GAGTACATCTTAATTGCAAATTATGGC 57.815 33.333 1.71 2.23 0.00 4.40
110 111 9.683069 GGAGTACATCTTAATTGCAAATTATGG 57.317 33.333 1.71 0.00 0.00 2.74
111 112 9.683069 GGGAGTACATCTTAATTGCAAATTATG 57.317 33.333 1.71 6.18 0.00 1.90
112 113 9.646522 AGGGAGTACATCTTAATTGCAAATTAT 57.353 29.630 1.71 0.00 0.00 1.28
113 114 9.120538 GAGGGAGTACATCTTAATTGCAAATTA 57.879 33.333 1.71 0.15 0.00 1.40
114 115 7.068716 GGAGGGAGTACATCTTAATTGCAAATT 59.931 37.037 1.71 1.18 0.00 1.82
115 116 6.547510 GGAGGGAGTACATCTTAATTGCAAAT 59.452 38.462 1.71 0.00 0.00 2.32
116 117 5.885912 GGAGGGAGTACATCTTAATTGCAAA 59.114 40.000 1.71 0.00 0.00 3.68
117 118 5.437060 GGAGGGAGTACATCTTAATTGCAA 58.563 41.667 0.00 0.00 0.00 4.08
118 119 4.442893 CGGAGGGAGTACATCTTAATTGCA 60.443 45.833 0.00 0.00 0.00 4.08
119 120 4.058817 CGGAGGGAGTACATCTTAATTGC 58.941 47.826 0.00 0.00 0.00 3.56
120 121 5.277857 ACGGAGGGAGTACATCTTAATTG 57.722 43.478 0.00 0.00 0.00 2.32
121 122 4.344390 GGACGGAGGGAGTACATCTTAATT 59.656 45.833 0.00 0.00 0.00 1.40
122 123 3.896272 GGACGGAGGGAGTACATCTTAAT 59.104 47.826 0.00 0.00 0.00 1.40
123 124 3.294214 GGACGGAGGGAGTACATCTTAA 58.706 50.000 0.00 0.00 0.00 1.85
124 125 2.242965 TGGACGGAGGGAGTACATCTTA 59.757 50.000 0.00 0.00 0.00 2.10
125 126 1.006758 TGGACGGAGGGAGTACATCTT 59.993 52.381 0.00 0.00 0.00 2.40
126 127 0.629596 TGGACGGAGGGAGTACATCT 59.370 55.000 0.00 0.00 0.00 2.90
127 128 1.481871 TTGGACGGAGGGAGTACATC 58.518 55.000 0.00 0.00 31.71 3.06
128 129 1.946984 TTTGGACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 31.71 2.29
129 130 1.719529 TTTTGGACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
130 131 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
131 132 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
132 133 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
133 134 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
134 135 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
135 136 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
136 137 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
137 138 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
138 139 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
139 140 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
140 141 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
141 142 8.711457 CCATTTTGATGACAAGTATTTTTGGAC 58.289 33.333 0.00 0.00 37.32 4.02
142 143 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
143 144 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
186 187 8.827677 GGATGCATCTAGACGTATTTTAGTTTT 58.172 33.333 25.28 0.00 0.00 2.43
187 188 7.441458 GGGATGCATCTAGACGTATTTTAGTTT 59.559 37.037 25.28 0.00 0.00 2.66
188 189 6.929606 GGGATGCATCTAGACGTATTTTAGTT 59.070 38.462 25.28 0.00 0.00 2.24
189 190 6.456501 GGGATGCATCTAGACGTATTTTAGT 58.543 40.000 25.28 0.00 0.00 2.24
190 191 5.869888 GGGGATGCATCTAGACGTATTTTAG 59.130 44.000 25.28 0.00 0.00 1.85
191 192 5.542635 AGGGGATGCATCTAGACGTATTTTA 59.457 40.000 25.28 0.00 0.00 1.52
192 193 4.348168 AGGGGATGCATCTAGACGTATTTT 59.652 41.667 25.28 0.00 0.00 1.82
193 194 3.904339 AGGGGATGCATCTAGACGTATTT 59.096 43.478 25.28 0.00 0.00 1.40
194 195 3.511477 AGGGGATGCATCTAGACGTATT 58.489 45.455 25.28 0.13 0.00 1.89
195 196 3.176924 AGGGGATGCATCTAGACGTAT 57.823 47.619 25.28 0.00 0.00 3.06
196 197 2.677542 AGGGGATGCATCTAGACGTA 57.322 50.000 25.28 0.00 0.00 3.57
197 198 1.794714 AAGGGGATGCATCTAGACGT 58.205 50.000 25.28 12.28 0.00 4.34
198 199 2.918712 AAAGGGGATGCATCTAGACG 57.081 50.000 25.28 0.00 0.00 4.18
199 200 8.870075 ATTAATAAAAGGGGATGCATCTAGAC 57.130 34.615 25.28 13.29 0.00 2.59
200 201 9.881773 AAATTAATAAAAGGGGATGCATCTAGA 57.118 29.630 25.28 0.00 0.00 2.43
203 204 8.991275 TCAAAATTAATAAAAGGGGATGCATCT 58.009 29.630 25.28 7.83 0.00 2.90
204 205 9.783081 ATCAAAATTAATAAAAGGGGATGCATC 57.217 29.630 18.81 18.81 0.00 3.91
205 206 9.563748 CATCAAAATTAATAAAAGGGGATGCAT 57.436 29.630 0.00 0.00 0.00 3.96
206 207 8.766476 TCATCAAAATTAATAAAAGGGGATGCA 58.234 29.630 0.00 0.00 0.00 3.96
207 208 9.045223 GTCATCAAAATTAATAAAAGGGGATGC 57.955 33.333 0.00 0.00 0.00 3.91
211 212 9.942850 ACTTGTCATCAAAATTAATAAAAGGGG 57.057 29.630 0.00 0.00 32.87 4.79
222 223 8.023128 CGTCTGGAAATACTTGTCATCAAAATT 58.977 33.333 0.00 0.00 32.87 1.82
223 224 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
224 225 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
225 226 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
226 227 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
227 228 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
228 229 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
229 230 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
230 231 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
231 232 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
232 233 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
233 234 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
234 235 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
235 236 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
236 237 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
237 238 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
238 239 2.389715 CTACTCCCTCCGTCTGGAAAT 58.610 52.381 0.00 0.00 45.87 2.17
239 240 1.848652 CTACTCCCTCCGTCTGGAAA 58.151 55.000 0.00 0.00 45.87 3.13
240 241 0.683504 GCTACTCCCTCCGTCTGGAA 60.684 60.000 0.00 0.00 45.87 3.53
241 242 1.076923 GCTACTCCCTCCGTCTGGA 60.077 63.158 0.00 0.00 43.88 3.86
242 243 1.379977 TGCTACTCCCTCCGTCTGG 60.380 63.158 0.00 0.00 0.00 3.86
243 244 0.681564 AGTGCTACTCCCTCCGTCTG 60.682 60.000 0.00 0.00 0.00 3.51
244 245 0.039911 AAGTGCTACTCCCTCCGTCT 59.960 55.000 0.00 0.00 0.00 4.18
245 246 1.760192 TAAGTGCTACTCCCTCCGTC 58.240 55.000 0.00 0.00 0.00 4.79
246 247 2.226962 TTAAGTGCTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
247 248 3.604875 TTTTAAGTGCTACTCCCTCCG 57.395 47.619 0.00 0.00 0.00 4.63
248 249 4.096532 GCAATTTTAAGTGCTACTCCCTCC 59.903 45.833 7.58 0.00 45.65 4.30
249 250 5.236655 GCAATTTTAAGTGCTACTCCCTC 57.763 43.478 7.58 0.00 45.65 4.30
383 385 8.617809 TGTGTTAGAGTTTGATTAAACCAACTC 58.382 33.333 17.10 17.10 45.77 3.01
419 421 5.818678 TCCTCTATATATGGGCGTTGTTT 57.181 39.130 0.00 0.00 0.00 2.83
421 423 4.777896 ACATCCTCTATATATGGGCGTTGT 59.222 41.667 0.00 0.00 0.00 3.32
422 424 5.344743 ACATCCTCTATATATGGGCGTTG 57.655 43.478 0.00 0.00 0.00 4.10
426 428 6.313905 CGTCAAAACATCCTCTATATATGGGC 59.686 42.308 0.00 0.00 0.00 5.36
529 557 0.034896 GGAAGAACTGGTCAAGGCGA 59.965 55.000 0.00 0.00 0.00 5.54
531 559 1.882623 CAAGGAAGAACTGGTCAAGGC 59.117 52.381 0.00 0.00 0.00 4.35
535 563 9.667107 CTATTTATAACAAGGAAGAACTGGTCA 57.333 33.333 0.00 0.00 0.00 4.02
536 564 8.613482 GCTATTTATAACAAGGAAGAACTGGTC 58.387 37.037 0.00 0.00 0.00 4.02
537 565 8.107095 TGCTATTTATAACAAGGAAGAACTGGT 58.893 33.333 0.00 0.00 0.00 4.00
540 568 9.125026 CCATGCTATTTATAACAAGGAAGAACT 57.875 33.333 0.00 0.00 0.00 3.01
555 583 8.983724 GCTAACAAAACAAAACCATGCTATTTA 58.016 29.630 0.00 0.00 0.00 1.40
571 601 7.873739 AGCATGTTGATTTAGCTAACAAAAC 57.126 32.000 5.45 10.81 37.78 2.43
573 603 8.763356 CAAAAGCATGTTGATTTAGCTAACAAA 58.237 29.630 5.45 0.00 34.38 2.83
659 689 7.739498 TTTGATGGGTTAGTTTAGACTTCAC 57.261 36.000 0.00 0.00 37.33 3.18
675 706 3.278574 TCTAGAACGGCATTTTGATGGG 58.721 45.455 0.00 0.00 0.00 4.00
702 733 5.475564 GGGTTTGCTTCAGGTTCTACAATTA 59.524 40.000 0.00 0.00 0.00 1.40
708 739 3.219281 GTTGGGTTTGCTTCAGGTTCTA 58.781 45.455 0.00 0.00 0.00 2.10
750 781 1.779157 GTTTCGAACGGCTTTTTGCTC 59.221 47.619 0.00 0.00 42.39 4.26
993 1024 2.129555 ATATGGCCGCCATGGGAGAC 62.130 60.000 31.52 0.00 44.84 3.36
1125 1156 2.736995 CGCACCACCGAACGTGAT 60.737 61.111 0.00 0.00 46.20 3.06
1301 1333 1.134521 GTGGATCAAGTACGATGCCCA 60.135 52.381 0.00 9.69 33.12 5.36
1372 1414 2.747686 GGAGCAGGGACGGAACAA 59.252 61.111 0.00 0.00 0.00 2.83
1408 1450 1.880027 CCATATTACCCCGCTCAAAGC 59.120 52.381 0.00 0.00 38.02 3.51
1409 1451 1.880027 GCCATATTACCCCGCTCAAAG 59.120 52.381 0.00 0.00 0.00 2.77
1434 1476 1.761371 CGGGATAGGACTGGGATGGAA 60.761 57.143 0.00 0.00 0.00 3.53
1498 1540 6.770785 ACAAAGTATGGTTACTCAAAGCTTCA 59.229 34.615 0.00 0.00 37.70 3.02
1647 1691 8.692710 CAACAGGAACTATAACTAGATGGTACA 58.307 37.037 0.00 0.00 40.40 2.90
1681 1725 5.416947 GTCAGGTTGATGACGTATTACCTT 58.583 41.667 0.00 0.00 40.18 3.50
1692 1736 9.513906 TTCTAATTATTGTTGTCAGGTTGATGA 57.486 29.630 0.00 0.00 0.00 2.92
1946 1990 2.057137 AACTTGCTCTGCTGGTTCAA 57.943 45.000 0.00 0.00 0.00 2.69
2111 2155 2.096013 GCATTAGTCGCTGGAAAACTCC 59.904 50.000 0.00 0.00 0.00 3.85
2118 2162 4.202245 AGTAAAAGCATTAGTCGCTGGA 57.798 40.909 0.00 0.00 40.35 3.86
2174 2219 5.437060 ACTTTGCTAGGAAACTGAAACTCA 58.563 37.500 5.16 0.00 43.88 3.41
2273 2318 7.312154 TCCAAAATCGACAATTGTTAGGATTG 58.688 34.615 22.91 19.02 39.73 2.67
2362 2407 7.264947 CACAAATGGTGGATAAATTAAGGGAC 58.735 38.462 0.00 0.00 44.04 4.46
2491 2536 1.975407 CCAAGTCCCAGCAGCAAGG 60.975 63.158 0.00 0.00 0.00 3.61
2534 2579 0.581529 CACGCTCAAAACGCTTCAGA 59.418 50.000 0.00 0.00 0.00 3.27
2549 2594 7.406553 TCTCTTTATGTGCATTTTATACACGC 58.593 34.615 0.00 0.00 37.11 5.34
2620 2665 9.196552 GTCAGAAAAAGATCCTTTATTTGGTTG 57.803 33.333 0.00 0.00 0.00 3.77
2957 3002 7.067494 ACTGGTTCAAAGCCATTTATATGAGTC 59.933 37.037 0.00 0.00 35.19 3.36
3207 3252 5.468540 ACTGGGAAATTTTAACAGAAGCC 57.531 39.130 18.55 2.49 33.57 4.35
3331 3376 9.877137 GGAAAAACTTTTATTAATGCCAACAAG 57.123 29.630 0.00 0.00 0.00 3.16
3390 3436 9.425577 CCCTAACAGAGAAGTAAAAACTCTTAG 57.574 37.037 0.00 0.00 38.69 2.18
3690 3737 6.353323 GGAAAAGGAAAAACAATTGGGAAGA 58.647 36.000 10.83 0.00 0.00 2.87
3762 3839 3.963129 TCCGTGCCCAATTCTAGAAAAT 58.037 40.909 9.71 0.00 0.00 1.82
3782 3859 6.706055 TCGACATTTCACTCACACTATTTC 57.294 37.500 0.00 0.00 0.00 2.17
3804 3881 8.964476 TTTGTGAAGAAGAGATGGGTAATATC 57.036 34.615 0.00 0.00 0.00 1.63
3879 3965 5.431179 TTGGGAACAGAGGGAGTAATTAC 57.569 43.478 7.57 7.57 44.54 1.89
3893 3979 7.093945 GGCTAGAAAGACAATTATTTGGGAACA 60.094 37.037 0.00 0.00 37.15 3.18
3894 3980 7.093945 TGGCTAGAAAGACAATTATTTGGGAAC 60.094 37.037 0.00 0.00 38.01 3.62
3899 3985 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
3905 3991 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
3906 3992 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
3909 3995 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
3912 3998 6.560003 TTAGTCCATTTGAGATGGCTAGAA 57.440 37.500 0.00 0.00 39.01 2.10
3913 3999 6.070251 TGTTTAGTCCATTTGAGATGGCTAGA 60.070 38.462 0.00 0.00 39.01 2.43
3914 4000 6.115446 TGTTTAGTCCATTTGAGATGGCTAG 58.885 40.000 0.00 0.00 39.01 3.42
3915 4001 6.061022 TGTTTAGTCCATTTGAGATGGCTA 57.939 37.500 0.00 0.33 39.01 3.93
3916 4002 4.922206 TGTTTAGTCCATTTGAGATGGCT 58.078 39.130 0.00 1.24 39.01 4.75
3917 4003 5.841957 ATGTTTAGTCCATTTGAGATGGC 57.158 39.130 0.00 0.00 39.01 4.40
3918 4004 6.017934 CCGTATGTTTAGTCCATTTGAGATGG 60.018 42.308 0.00 0.00 40.48 3.51
3919 4005 6.761242 TCCGTATGTTTAGTCCATTTGAGATG 59.239 38.462 0.00 0.00 0.00 2.90
3920 4006 6.884832 TCCGTATGTTTAGTCCATTTGAGAT 58.115 36.000 0.00 0.00 0.00 2.75
3921 4007 6.288941 TCCGTATGTTTAGTCCATTTGAGA 57.711 37.500 0.00 0.00 0.00 3.27
3924 4010 6.677781 ACATCCGTATGTTTAGTCCATTTG 57.322 37.500 0.00 0.00 44.07 2.32
3926 4012 7.962964 CATACATCCGTATGTTTAGTCCATT 57.037 36.000 0.00 0.00 46.70 3.16
3938 4024 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
3940 4026 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
3942 4028 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
3943 4029 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
3949 4035 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
3950 4036 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
3952 4038 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
3953 4039 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
3966 4052 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3968 4054 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3969 4055 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3970 4056 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3971 4057 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3972 4058 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3973 4059 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3974 4060 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3975 4061 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3976 4062 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3977 4063 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3978 4064 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3979 4065 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3980 4066 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3981 4067 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3982 4068 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3983 4069 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3984 4070 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3986 4072 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3987 4073 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3988 4074 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3989 4075 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3992 4078 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3994 4080 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3996 4082 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3997 4083 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3998 4084 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3999 4085 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4000 4086 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4015 4101 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
4017 4103 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
4018 4104 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
4019 4105 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
4022 4108 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
4023 4109 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
4024 4110 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
4026 4112 5.522641 AGTACTCCCTCCGTTCCTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
4032 4318 6.424883 CATATATAGTACTCCCTCCGTTCCT 58.575 44.000 0.00 0.00 0.00 3.36
4107 4393 8.730680 GTTCCTACTTTGCTCTTGATCATTAAA 58.269 33.333 0.00 0.00 0.00 1.52
4188 4476 6.488683 TCCCGTTCAAAACATAGATGTCTTTT 59.511 34.615 0.00 0.00 40.80 2.27
4240 4528 5.441500 TGACAAATTTGAAGGTACAGTCCA 58.558 37.500 24.64 2.69 0.00 4.02
4442 4872 1.081509 GCAATGAAAGAACGCCGCA 60.082 52.632 0.00 0.00 0.00 5.69
4494 4924 2.352960 GTCAATACAGCAGGCAAGCTAC 59.647 50.000 4.11 0.00 44.54 3.58
4529 4959 4.463050 TTTACAACCTCAACCCCTGAAT 57.537 40.909 0.00 0.00 32.17 2.57
4706 5138 1.622312 ACCGGTGGAAAGTAGAGGTTC 59.378 52.381 6.12 0.00 0.00 3.62
4912 5345 6.828273 TGGCTCAAATTATTAAGCTAGCAGAA 59.172 34.615 18.83 10.65 35.12 3.02
5176 5609 1.986882 AGTTCCTTGGCTTGAACCAG 58.013 50.000 9.61 0.00 41.82 4.00
5275 5708 6.068010 TCCCTGCAAAGAGAATTCAAGTTAA 58.932 36.000 8.44 0.00 0.00 2.01
5471 5904 2.037687 CAGCCAAAGATGCCCCCA 59.962 61.111 0.00 0.00 0.00 4.96
5512 5945 2.706890 TCTGGATCTTTTTGTACGGCC 58.293 47.619 0.00 0.00 0.00 6.13
5576 6009 7.129109 AGAAAACGATAACATTCGAACACAT 57.871 32.000 0.00 0.00 41.62 3.21
5590 6023 7.780008 TGTCAAAGAAGTGAAGAAAACGATA 57.220 32.000 0.00 0.00 0.00 2.92
5691 6128 7.971168 AGAGATTCAGATAAACAACACTAGTCG 59.029 37.037 0.00 0.00 0.00 4.18
5696 6133 7.220030 ACACAGAGATTCAGATAAACAACACT 58.780 34.615 0.00 0.00 0.00 3.55
5716 6153 5.679734 ACTTCATTCAGCTTTGTACACAG 57.320 39.130 4.59 4.59 0.00 3.66
5786 6225 2.282745 AGGACAAAGCAGGCTGCC 60.283 61.111 34.33 19.06 46.52 4.85
5882 6388 5.556915 TCTATTATTAGGGATGCAAACGGG 58.443 41.667 0.00 0.00 0.00 5.28
5984 6491 4.558226 TCAAGCCATTCACACATCTACT 57.442 40.909 0.00 0.00 0.00 2.57
6004 6511 5.600908 TCAAATACTGCTGGTAACGTTTC 57.399 39.130 5.91 0.00 42.51 2.78
6009 6516 6.927294 ATAGCTTCAAATACTGCTGGTAAC 57.073 37.500 0.00 0.00 37.02 2.50
6010 6517 8.482943 TCTTATAGCTTCAAATACTGCTGGTAA 58.517 33.333 0.00 0.00 37.02 2.85
6025 6532 6.980978 GCCCCTTTGAATTTTCTTATAGCTTC 59.019 38.462 0.00 0.00 0.00 3.86
6034 6541 1.546029 GCTCGCCCCTTTGAATTTTCT 59.454 47.619 0.00 0.00 0.00 2.52
6064 6572 1.901159 TGCATTTTGGTCCTTCATGGG 59.099 47.619 0.00 0.00 36.20 4.00
6074 6582 7.944729 AATAACTGTAGAGATGCATTTTGGT 57.055 32.000 0.00 0.00 0.00 3.67
6086 6594 4.649674 TCTGGCCCTGTAATAACTGTAGAG 59.350 45.833 0.00 0.00 0.00 2.43
6110 6618 2.030274 GCGTAAAAATGACCTTGGCAGT 60.030 45.455 0.00 0.00 0.00 4.40
6182 6691 1.044790 GGATTGGATGGTGGGGCTTG 61.045 60.000 0.00 0.00 0.00 4.01
6191 6700 1.451936 GAGACCCCGGATTGGATGG 59.548 63.158 0.73 0.00 42.00 3.51
6369 6878 1.279846 CACGGGGTACAAATAGGGTGT 59.720 52.381 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.