Multiple sequence alignment - TraesCS2B01G232800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G232800 chr2B 100.000 4158 0 0 1 4158 230967981 230972138 0.000000e+00 7679.0
1 TraesCS2B01G232800 chr2D 95.093 3240 104 17 1 3197 166866762 166863535 0.000000e+00 5051.0
2 TraesCS2B01G232800 chr2D 91.876 837 30 18 3196 4008 166863500 166862678 0.000000e+00 1134.0
3 TraesCS2B01G232800 chr2A 92.171 3257 176 40 1 3198 183512995 183516231 0.000000e+00 4529.0
4 TraesCS2B01G232800 chr2A 92.075 429 21 6 3741 4158 183516849 183517275 3.580000e-165 592.0
5 TraesCS2B01G232800 chr2A 90.233 215 20 1 3196 3409 183516267 183516481 3.170000e-71 279.0
6 TraesCS2B01G232800 chr7B 89.706 68 7 0 374 441 46386016 46386083 2.060000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G232800 chr2B 230967981 230972138 4157 False 7679.0 7679 100.0000 1 4158 1 chr2B.!!$F1 4157
1 TraesCS2B01G232800 chr2D 166862678 166866762 4084 True 3092.5 5051 93.4845 1 4008 2 chr2D.!!$R1 4007
2 TraesCS2B01G232800 chr2A 183512995 183517275 4280 False 1800.0 4529 91.4930 1 4158 3 chr2A.!!$F1 4157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 725 0.806492 GGCTCATTCCTTCCGTCGAC 60.806 60.0 5.18 5.18 0.0 4.20 F
1764 1810 0.253347 TCCAAGAAGAGGCCCTGGAT 60.253 55.0 0.00 0.00 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 1999 0.179032 TGTTGACCAATGCCGTGACT 60.179 50.0 0.0 0.0 0.0 3.41 R
3292 3394 0.333652 TCTCGATCCCCACTGTACCA 59.666 55.0 0.0 0.0 0.0 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 107 1.202580 CCGCTCTTCTTCGGGATTCAT 60.203 52.381 0.00 0.00 41.82 2.57
143 146 2.810164 GTTCCTAGGAGTCACAGACCT 58.190 52.381 12.26 0.00 37.76 3.85
230 233 3.998913 TGTGATCATGGAAACCTGCTA 57.001 42.857 0.00 0.00 0.00 3.49
261 264 4.509600 GCAGTTAATCTCTGGAATTCTCGG 59.490 45.833 5.23 1.12 33.98 4.63
264 267 7.265673 CAGTTAATCTCTGGAATTCTCGGTAA 58.734 38.462 5.23 0.00 0.00 2.85
334 341 6.074623 GCTTGCTCTTAGTTTTGCTTCTTTTC 60.075 38.462 0.00 0.00 0.00 2.29
365 372 9.500785 TCAACATGTACTAAGATCAACAAATGA 57.499 29.630 0.00 0.00 43.67 2.57
419 427 2.223502 CGCTTAATGTGACCGAGAGCTA 60.224 50.000 0.00 0.00 0.00 3.32
443 451 6.316513 AGTTAGACACTATCCCTATCTTCCC 58.683 44.000 0.00 0.00 31.97 3.97
444 452 4.134933 AGACACTATCCCTATCTTCCCC 57.865 50.000 0.00 0.00 0.00 4.81
485 514 4.355543 TGCATTCGTTGATTAAAGCTCC 57.644 40.909 0.00 0.00 0.00 4.70
500 529 1.416401 AGCTCCGTGAAGTTCCTTGAA 59.584 47.619 0.00 0.00 0.00 2.69
501 530 2.158813 AGCTCCGTGAAGTTCCTTGAAA 60.159 45.455 0.00 0.00 0.00 2.69
502 531 2.616842 GCTCCGTGAAGTTCCTTGAAAA 59.383 45.455 0.00 0.00 0.00 2.29
582 611 2.164624 ACAGTAGCATCTCCGTGAGTTC 59.835 50.000 0.00 0.00 0.00 3.01
688 725 0.806492 GGCTCATTCCTTCCGTCGAC 60.806 60.000 5.18 5.18 0.00 4.20
752 792 4.778415 CGTCCTCACTCACGCGGG 62.778 72.222 12.47 6.51 0.00 6.13
1148 1194 2.125350 GCAAGACGAGCAGGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
1357 1403 3.289062 TCGTTGACGCGGTGAGGA 61.289 61.111 12.47 3.51 39.60 3.71
1667 1713 3.813688 GCGCGACGACGACAAGTC 61.814 66.667 12.10 0.00 46.16 3.01
1764 1810 0.253347 TCCAAGAAGAGGCCCTGGAT 60.253 55.000 0.00 0.00 0.00 3.41
1816 1862 0.749818 TTGCAAAGGCGACCTTGTCA 60.750 50.000 11.17 9.41 43.92 3.58
2269 2315 2.359169 ATCCCGCGCTCCTCAAAGA 61.359 57.895 5.56 0.00 0.00 2.52
2379 2425 1.587054 CGTGCTCTTCTTCCTCCGT 59.413 57.895 0.00 0.00 0.00 4.69
2405 2451 3.720193 CACCACGCTGCAGCACTC 61.720 66.667 36.03 9.28 42.21 3.51
2682 2728 3.000080 GCGGTTCTTGCTGTCGACG 62.000 63.158 11.62 7.05 0.00 5.12
2768 2814 7.461107 AGGTAATCACAACATTAAAACGATCG 58.539 34.615 14.88 14.88 0.00 3.69
2772 2818 7.953305 ATCACAACATTAAAACGATCGAATG 57.047 32.000 24.34 21.52 35.77 2.67
2773 2819 7.123160 TCACAACATTAAAACGATCGAATGA 57.877 32.000 25.30 9.47 34.18 2.57
2856 2914 1.021920 GGAACCTCGAGAAGCTTGCC 61.022 60.000 15.71 1.45 0.00 4.52
2959 3017 1.267806 GCCTGTGACCTTGATTGTGTG 59.732 52.381 0.00 0.00 0.00 3.82
2960 3018 2.575532 CCTGTGACCTTGATTGTGTGT 58.424 47.619 0.00 0.00 0.00 3.72
3048 3106 6.466308 TGTTACAGTGAATGAACGAATGAG 57.534 37.500 0.00 0.00 0.00 2.90
3091 3150 1.672356 GGCGATGTGTTGCTCCTGT 60.672 57.895 0.00 0.00 34.97 4.00
3092 3151 1.499056 GCGATGTGTTGCTCCTGTG 59.501 57.895 0.00 0.00 0.00 3.66
3093 3152 1.230635 GCGATGTGTTGCTCCTGTGT 61.231 55.000 0.00 0.00 0.00 3.72
3095 3154 0.792640 GATGTGTTGCTCCTGTGTCG 59.207 55.000 0.00 0.00 0.00 4.35
3096 3155 1.230635 ATGTGTTGCTCCTGTGTCGC 61.231 55.000 0.00 0.00 0.00 5.19
3097 3156 1.595382 GTGTTGCTCCTGTGTCGCT 60.595 57.895 0.00 0.00 0.00 4.93
3100 3159 2.210013 TTGCTCCTGTGTCGCTCCT 61.210 57.895 0.00 0.00 0.00 3.69
3101 3160 2.125753 GCTCCTGTGTCGCTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
3104 3163 1.527433 CTCCTGTGTCGCTCCTGACA 61.527 60.000 0.00 0.00 46.15 3.58
3108 3167 2.340078 TGTCGCTCCTGACACAGC 59.660 61.111 0.00 0.00 43.62 4.40
3109 3168 2.340078 GTCGCTCCTGACACAGCA 59.660 61.111 3.19 0.00 38.75 4.41
3110 3169 2.024319 GTCGCTCCTGACACAGCAC 61.024 63.158 3.19 0.00 38.75 4.40
3111 3170 3.108289 CGCTCCTGACACAGCACG 61.108 66.667 3.19 0.00 35.15 5.34
3112 3171 2.740055 GCTCCTGACACAGCACGG 60.740 66.667 0.00 0.00 35.56 4.94
3134 3198 2.106566 CACTGGCACTCTCCTCTGTAT 58.893 52.381 0.00 0.00 0.00 2.29
3140 3204 3.323403 GGCACTCTCCTCTGTATATTGCT 59.677 47.826 0.00 0.00 0.00 3.91
3188 3252 4.283978 TCATTCAAAGCCATTCCACAATGT 59.716 37.500 0.00 0.00 38.22 2.71
3194 3258 2.846206 AGCCATTCCACAATGTAGGAGA 59.154 45.455 5.10 0.00 38.22 3.71
3222 3324 4.452114 TCATTAGAATGGCAAATCGATCGG 59.548 41.667 16.41 0.00 37.03 4.18
3270 3372 1.135046 CCTGCGCGTTATGATCTCTG 58.865 55.000 8.43 0.00 0.00 3.35
3271 3373 1.536922 CCTGCGCGTTATGATCTCTGT 60.537 52.381 8.43 0.00 0.00 3.41
3309 3411 0.040646 AGTGGTACAGTGGGGATCGA 59.959 55.000 0.00 0.00 42.47 3.59
3320 3422 1.531840 GGGATCGAGAGCCTGCCTA 60.532 63.158 7.36 0.00 37.00 3.93
3361 3467 1.502231 ACGCCGATGAGTTATGATGC 58.498 50.000 0.00 0.00 0.00 3.91
3424 3531 0.912486 CTCCTTTACCCCAGTCCCAG 59.088 60.000 0.00 0.00 0.00 4.45
3425 3532 0.195096 TCCTTTACCCCAGTCCCAGT 59.805 55.000 0.00 0.00 0.00 4.00
3426 3533 0.618981 CCTTTACCCCAGTCCCAGTC 59.381 60.000 0.00 0.00 0.00 3.51
3427 3534 0.618981 CTTTACCCCAGTCCCAGTCC 59.381 60.000 0.00 0.00 0.00 3.85
3428 3535 0.843343 TTTACCCCAGTCCCAGTCCC 60.843 60.000 0.00 0.00 0.00 4.46
3429 3536 2.051050 TTACCCCAGTCCCAGTCCCA 62.051 60.000 0.00 0.00 0.00 4.37
3458 3565 0.525761 ATTGCAATCGAAACCGTGGG 59.474 50.000 5.99 0.00 0.00 4.61
3631 3776 6.128486 TGTGGTAATGCTGATGGATGTTTAT 58.872 36.000 0.00 0.00 0.00 1.40
3632 3777 6.606796 TGTGGTAATGCTGATGGATGTTTATT 59.393 34.615 0.00 0.00 0.00 1.40
3633 3778 7.777440 TGTGGTAATGCTGATGGATGTTTATTA 59.223 33.333 0.00 0.00 0.00 0.98
3656 3801 2.038033 TGCTCCTTTACGCTGTAGGTTT 59.962 45.455 0.00 0.00 0.00 3.27
3697 3917 3.699894 CTGCTGGTCCGGCTCTGT 61.700 66.667 23.33 0.00 36.58 3.41
3698 3918 3.655810 CTGCTGGTCCGGCTCTGTC 62.656 68.421 23.33 0.00 36.58 3.51
3699 3919 3.386237 GCTGGTCCGGCTCTGTCT 61.386 66.667 16.02 0.00 32.24 3.41
3700 3920 2.575993 CTGGTCCGGCTCTGTCTG 59.424 66.667 0.00 0.00 0.00 3.51
3701 3921 3.655810 CTGGTCCGGCTCTGTCTGC 62.656 68.421 0.00 0.00 0.00 4.26
3713 3940 4.116238 GCTCTGTCTGCTGTACCTTAATC 58.884 47.826 0.00 0.00 0.00 1.75
3737 3964 8.642908 TCTGTTATTACTGATACATTTGTCGG 57.357 34.615 0.00 0.00 0.00 4.79
3758 3986 2.462889 GGTTGCTGTGTGTTGTTCATG 58.537 47.619 0.00 0.00 0.00 3.07
3847 4079 1.007238 TCTTGGTCTCTGTCCCCCTAG 59.993 57.143 0.00 0.00 0.00 3.02
3877 4109 1.574428 GCCAACTACACGGCTGTTG 59.426 57.895 0.00 0.00 45.29 3.33
3878 4110 1.164041 GCCAACTACACGGCTGTTGT 61.164 55.000 0.00 0.30 45.29 3.32
3879 4111 1.874739 GCCAACTACACGGCTGTTGTA 60.875 52.381 0.00 1.61 45.29 2.41
3897 4132 4.036567 TGTATTCCGTATTCTGGTCACG 57.963 45.455 0.00 0.00 35.50 4.35
4016 4257 3.041940 GTGTCAGGGCAACGGACG 61.042 66.667 6.48 0.00 42.53 4.79
4017 4258 3.228017 TGTCAGGGCAACGGACGA 61.228 61.111 0.00 0.00 42.53 4.20
4043 4284 4.548916 CGTCTTCAATCACGAAATCATCCG 60.549 45.833 0.00 0.00 38.32 4.18
4045 4286 4.566759 TCTTCAATCACGAAATCATCCGTC 59.433 41.667 0.00 0.00 36.83 4.79
4047 4288 3.865164 TCAATCACGAAATCATCCGTCTG 59.135 43.478 0.00 0.00 36.83 3.51
4060 4301 3.981071 TCCGTCTGGACTGATCATTTT 57.019 42.857 0.00 0.00 40.17 1.82
4087 4331 4.737855 TGGGCTTGAGCTAGTTTACTAG 57.262 45.455 11.68 11.68 46.63 2.57
4134 4378 3.374220 GAGCTGATCTGATCTGGTCTG 57.626 52.381 31.91 13.33 45.98 3.51
4146 4390 0.169672 CTGGTCTGCCTTTTCATGCG 59.830 55.000 0.00 0.00 35.27 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 107 1.304052 GGCTTACACCATGCACCCA 60.304 57.895 0.00 0.00 0.00 4.51
143 146 4.467084 GGGCGTCGGCATTGAGGA 62.467 66.667 21.23 0.00 42.47 3.71
226 229 4.599041 AGATTAACTGCCACCAAATAGCA 58.401 39.130 0.00 0.00 34.79 3.49
230 233 4.019174 CCAGAGATTAACTGCCACCAAAT 58.981 43.478 0.00 0.00 34.47 2.32
261 264 0.108520 TCACCGCCCGATCAGTTTAC 60.109 55.000 0.00 0.00 0.00 2.01
264 267 0.389391 CTATCACCGCCCGATCAGTT 59.611 55.000 0.00 0.00 0.00 3.16
334 341 9.083080 TGTTGATCTTAGTACATGTTGAATACG 57.917 33.333 2.30 0.00 0.00 3.06
365 372 5.600069 TGATTAGTACAGAGATGTGCAGGAT 59.400 40.000 0.00 0.00 0.00 3.24
419 427 6.316513 GGGAAGATAGGGATAGTGTCTAACT 58.683 44.000 0.00 0.00 43.40 2.24
443 451 0.461548 TCGCAGGAAGCTACTGATGG 59.538 55.000 19.33 9.33 42.61 3.51
444 452 2.299993 TTCGCAGGAAGCTACTGATG 57.700 50.000 19.33 11.76 42.61 3.07
522 551 0.104487 TACGTTGGCCAAGTTGTCGA 59.896 50.000 26.46 11.37 0.00 4.20
591 620 4.755266 AAATGTTGGGAGACGCTACTAT 57.245 40.909 0.00 0.00 0.00 2.12
592 621 4.546829 AAAATGTTGGGAGACGCTACTA 57.453 40.909 0.00 0.00 0.00 1.82
599 629 3.495753 ACGTACGAAAAATGTTGGGAGAC 59.504 43.478 24.41 0.00 0.00 3.36
688 725 0.458716 GGAGAAGAAGCGAAGGACGG 60.459 60.000 0.00 0.00 42.83 4.79
721 758 1.153147 GGACGAAGGCTTGGGGATC 60.153 63.158 13.94 2.33 0.00 3.36
752 792 1.926511 CTGGGGAAATGCGTCTGTGC 61.927 60.000 0.00 0.00 0.00 4.57
1117 1163 2.672996 TTGCTCCGCTTCTTGGCC 60.673 61.111 0.00 0.00 0.00 5.36
1161 1207 2.166664 GAGAGAGTTTATGGCGTCCAGT 59.833 50.000 4.90 0.00 36.75 4.00
1300 1346 4.504916 CGCCTCGTGCCTCTCCTG 62.505 72.222 0.00 0.00 36.24 3.86
1710 1756 1.523258 CTCGAGCAGCCCAATGAGG 60.523 63.158 0.00 0.00 37.03 3.86
1953 1999 0.179032 TGTTGACCAATGCCGTGACT 60.179 50.000 0.00 0.00 0.00 3.41
2050 2096 5.453903 CCACCATGTACTTCCTTATCTCCTG 60.454 48.000 0.00 0.00 0.00 3.86
2617 2663 1.449353 GGCCTAGCAGCTGCAGTAT 59.551 57.895 38.24 21.51 45.16 2.12
2682 2728 4.783621 TCCGCCAGATGCACCAGC 62.784 66.667 0.00 0.00 41.33 4.85
2781 2839 5.819379 TCAGCATCAATGTATTCAGAAGTCC 59.181 40.000 0.00 0.00 0.00 3.85
2856 2914 1.728426 GTCCGTCACGTTGGTCTCG 60.728 63.158 0.00 0.00 0.00 4.04
2959 3017 2.673368 CAATCAAGAACTAGTGCCGGAC 59.327 50.000 5.05 0.00 0.00 4.79
2960 3018 2.301870 ACAATCAAGAACTAGTGCCGGA 59.698 45.455 5.05 0.00 0.00 5.14
2968 3026 3.748048 GCAGACAGCACAATCAAGAACTA 59.252 43.478 0.00 0.00 44.79 2.24
3048 3106 3.732471 GCACTCGAATACACTGGAGAGAC 60.732 52.174 0.00 0.00 0.00 3.36
3091 3150 2.340078 GCTGTGTCAGGAGCGACA 59.660 61.111 0.00 0.00 43.54 4.35
3092 3151 2.024319 GTGCTGTGTCAGGAGCGAC 61.024 63.158 0.00 0.00 38.09 5.19
3093 3152 2.340078 GTGCTGTGTCAGGAGCGA 59.660 61.111 0.00 0.00 38.09 4.93
3095 3154 2.740055 CCGTGCTGTGTCAGGAGC 60.740 66.667 0.00 0.00 31.31 4.70
3096 3155 2.047844 CCCGTGCTGTGTCAGGAG 60.048 66.667 0.00 0.00 31.31 3.69
3097 3156 4.314440 GCCCGTGCTGTGTCAGGA 62.314 66.667 0.00 0.00 31.21 3.86
3100 3159 3.860605 AGTGCCCGTGCTGTGTCA 61.861 61.111 0.00 0.00 38.71 3.58
3101 3160 3.349006 CAGTGCCCGTGCTGTGTC 61.349 66.667 0.00 0.00 38.71 3.67
3108 3167 4.320456 AGAGTGCCAGTGCCCGTG 62.320 66.667 0.00 0.00 36.33 4.94
3109 3168 4.008933 GAGAGTGCCAGTGCCCGT 62.009 66.667 0.00 0.00 36.33 5.28
3110 3169 4.767255 GGAGAGTGCCAGTGCCCG 62.767 72.222 0.00 0.00 36.33 6.13
3111 3170 3.322318 GAGGAGAGTGCCAGTGCCC 62.322 68.421 0.00 0.00 36.33 5.36
3112 3171 2.267324 GAGGAGAGTGCCAGTGCC 59.733 66.667 0.00 0.00 36.33 5.01
3134 3198 7.602644 ACTTTTATTTCACAGAGACGAGCAATA 59.397 33.333 0.00 0.00 0.00 1.90
3177 3241 7.379059 TGATACATCTCCTACATTGTGGAAT 57.621 36.000 1.15 0.00 31.23 3.01
3188 3252 7.797121 TGCCATTCTAATGATACATCTCCTA 57.203 36.000 4.25 0.00 38.70 2.94
3194 3258 7.984422 TCGATTTGCCATTCTAATGATACAT 57.016 32.000 4.25 0.00 38.70 2.29
3222 3324 5.240623 CCTACCATGAGATACTGACTCAGAC 59.759 48.000 13.25 4.22 45.49 3.51
3291 3393 0.460311 CTCGATCCCCACTGTACCAC 59.540 60.000 0.00 0.00 0.00 4.16
3292 3394 0.333652 TCTCGATCCCCACTGTACCA 59.666 55.000 0.00 0.00 0.00 3.25
3295 3397 0.755698 GGCTCTCGATCCCCACTGTA 60.756 60.000 0.00 0.00 0.00 2.74
3296 3398 2.060980 GGCTCTCGATCCCCACTGT 61.061 63.158 0.00 0.00 0.00 3.55
3320 3422 1.028868 GTAGAGTACGTCGGCCAGGT 61.029 60.000 2.24 4.64 0.00 4.00
3361 3467 2.887568 GCGATCACCGGAGCACAG 60.888 66.667 9.46 0.00 39.04 3.66
3446 3553 1.004320 CCATGACCCACGGTTTCGA 60.004 57.895 0.00 0.00 35.25 3.71
3458 3565 1.067283 AGATGCCGATCGATCCATGAC 60.067 52.381 18.66 8.77 33.34 3.06
3631 3776 3.119245 CCTACAGCGTAAAGGAGCACTAA 60.119 47.826 0.00 0.00 35.48 2.24
3632 3777 2.426024 CCTACAGCGTAAAGGAGCACTA 59.574 50.000 0.00 0.00 35.48 2.74
3633 3778 1.204941 CCTACAGCGTAAAGGAGCACT 59.795 52.381 0.00 0.00 35.48 4.40
3697 3917 8.978472 AGTAATAACAGATTAAGGTACAGCAGA 58.022 33.333 0.00 0.00 0.00 4.26
3698 3918 9.035607 CAGTAATAACAGATTAAGGTACAGCAG 57.964 37.037 0.00 0.00 0.00 4.24
3699 3919 8.755028 TCAGTAATAACAGATTAAGGTACAGCA 58.245 33.333 0.00 0.00 0.00 4.41
3700 3920 9.765795 ATCAGTAATAACAGATTAAGGTACAGC 57.234 33.333 0.00 0.00 28.12 4.40
3713 3940 7.042051 CCCCGACAAATGTATCAGTAATAACAG 60.042 40.741 0.00 0.00 0.00 3.16
3727 3954 0.467290 ACAGCAACCCCGACAAATGT 60.467 50.000 0.00 0.00 0.00 2.71
3737 3964 0.814457 TGAACAACACACAGCAACCC 59.186 50.000 0.00 0.00 0.00 4.11
3772 4000 3.733337 AGTGTGCTTTCAGTCAGTTAGG 58.267 45.455 0.00 0.00 0.00 2.69
3847 4079 4.546570 GTGTAGTTGGCTTGTTTGGATTC 58.453 43.478 0.00 0.00 0.00 2.52
3877 4109 3.795101 CACGTGACCAGAATACGGAATAC 59.205 47.826 10.90 0.00 41.74 1.89
3878 4110 3.735820 GCACGTGACCAGAATACGGAATA 60.736 47.826 22.23 0.00 41.74 1.75
3879 4111 2.888594 CACGTGACCAGAATACGGAAT 58.111 47.619 10.90 0.00 41.74 3.01
3897 4132 2.799562 GCTTGTCCAAAACCTGAAGCAC 60.800 50.000 0.00 0.00 35.52 4.40
3933 4174 1.302511 GCCCGCCTTCTGTTCTCAA 60.303 57.895 0.00 0.00 0.00 3.02
4016 4257 3.722555 TTTCGTGATTGAAGACGCATC 57.277 42.857 0.00 0.00 35.53 3.91
4017 4258 3.684305 TGATTTCGTGATTGAAGACGCAT 59.316 39.130 0.00 0.00 35.53 4.73
4029 4270 1.822371 TCCAGACGGATGATTTCGTGA 59.178 47.619 0.00 0.00 39.88 4.35
4043 4284 6.385033 CAAAGGAAAAATGATCAGTCCAGAC 58.615 40.000 15.87 0.00 0.00 3.51
4045 4286 5.337009 CCCAAAGGAAAAATGATCAGTCCAG 60.337 44.000 15.87 8.12 33.47 3.86
4047 4288 4.621510 GCCCAAAGGAAAAATGATCAGTCC 60.622 45.833 0.09 5.54 33.47 3.85
4054 4295 3.244181 GCTCAAGCCCAAAGGAAAAATGA 60.244 43.478 0.00 0.00 33.47 2.57
4060 4301 1.705186 ACTAGCTCAAGCCCAAAGGAA 59.295 47.619 0.00 0.00 43.38 3.36
4087 4331 6.336842 TGACTAACCAAGGTGAAGTAGTAC 57.663 41.667 7.31 0.00 0.00 2.73
4121 4365 2.639347 TGAAAAGGCAGACCAGATCAGA 59.361 45.455 0.00 0.00 39.06 3.27
4126 4370 1.538047 GCATGAAAAGGCAGACCAGA 58.462 50.000 0.00 0.00 39.06 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.