Multiple sequence alignment - TraesCS2B01G232100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G232100 chr2B 100.000 4453 0 0 1 4453 229790821 229786369 0.000000e+00 8224.0
1 TraesCS2B01G232100 chr2B 88.636 792 78 6 3671 4453 588794242 588795030 0.000000e+00 953.0
2 TraesCS2B01G232100 chr2B 79.817 218 28 11 2096 2309 691180192 691179987 1.290000e-30 145.0
3 TraesCS2B01G232100 chrUn 93.862 782 38 3 3681 4453 64600670 64601450 0.000000e+00 1170.0
4 TraesCS2B01G232100 chr7B 93.920 773 36 5 3691 4453 542752230 542751459 0.000000e+00 1157.0
5 TraesCS2B01G232100 chr7B 92.720 783 40 6 3681 4453 263428957 263429732 0.000000e+00 1114.0
6 TraesCS2B01G232100 chr7B 91.850 773 51 5 3690 4453 108992493 108993262 0.000000e+00 1068.0
7 TraesCS2B01G232100 chr7B 76.000 225 29 12 2111 2315 121493106 121493325 4.740000e-15 93.5
8 TraesCS2B01G232100 chr2A 93.582 779 39 4 3684 4453 131746543 131747319 0.000000e+00 1151.0
9 TraesCS2B01G232100 chr2A 87.234 752 65 11 2338 3085 182008813 182008089 0.000000e+00 828.0
10 TraesCS2B01G232100 chr2A 90.047 633 34 15 757 1369 182010319 182009696 0.000000e+00 793.0
11 TraesCS2B01G232100 chr2A 91.863 553 34 4 3143 3690 182008086 182007540 0.000000e+00 761.0
12 TraesCS2B01G232100 chr2A 88.889 396 30 8 1563 1958 182009429 182009048 4.030000e-130 475.0
13 TraesCS2B01G232100 chr2A 91.667 276 15 4 239 513 182011176 182010908 4.210000e-100 375.0
14 TraesCS2B01G232100 chr2A 92.405 158 12 0 82 239 182011363 182011206 4.480000e-55 226.0
15 TraesCS2B01G232100 chr2A 96.721 61 2 0 1 61 182011407 182011347 7.880000e-18 102.0
16 TraesCS2B01G232100 chr4B 93.540 774 37 6 3690 4453 207673734 207672964 0.000000e+00 1140.0
17 TraesCS2B01G232100 chr4B 92.318 781 47 6 3684 4453 145018820 145019598 0.000000e+00 1098.0
18 TraesCS2B01G232100 chr4B 80.617 227 17 12 2114 2319 368106272 368106052 2.770000e-32 150.0
19 TraesCS2B01G232100 chr2D 88.026 927 45 24 665 1561 168424682 168425572 0.000000e+00 1037.0
20 TraesCS2B01G232100 chr2D 88.313 753 59 9 2338 3085 168426227 168426955 0.000000e+00 876.0
21 TraesCS2B01G232100 chr2D 85.861 778 99 11 3681 4453 594935951 594936722 0.000000e+00 817.0
22 TraesCS2B01G232100 chr2D 93.466 551 30 2 3136 3686 168426952 168427496 0.000000e+00 813.0
23 TraesCS2B01G232100 chr2D 91.709 398 30 3 1561 1958 168425599 168425993 2.340000e-152 549.0
24 TraesCS2B01G232100 chr2D 84.924 524 28 18 82 577 168424148 168424648 2.410000e-132 483.0
25 TraesCS2B01G232100 chr2D 84.848 231 20 8 2096 2319 277938722 277938944 7.500000e-53 219.0
26 TraesCS2B01G232100 chr2D 91.489 141 11 1 1956 2096 168426073 168426212 4.550000e-45 193.0
27 TraesCS2B01G232100 chr2D 83.648 159 22 2 2093 2251 360493100 360493254 3.590000e-31 147.0
28 TraesCS2B01G232100 chr2D 83.333 156 21 3 2096 2251 476921736 476921586 6.010000e-29 139.0
29 TraesCS2B01G232100 chr2D 95.082 61 3 0 1 61 168424104 168424164 3.670000e-16 97.1
30 TraesCS2B01G232100 chr5B 88.931 786 74 7 3678 4453 445046453 445045671 0.000000e+00 957.0
31 TraesCS2B01G232100 chr5B 88.931 786 73 8 3678 4453 445062828 445062047 0.000000e+00 957.0
32 TraesCS2B01G232100 chr7D 88.714 762 80 5 3695 4453 489368254 489367496 0.000000e+00 926.0
33 TraesCS2B01G232100 chr7D 86.842 190 16 3 2897 3077 59672257 59672068 2.100000e-48 204.0
34 TraesCS2B01G232100 chr7D 80.085 236 21 7 2096 2310 135255392 135255162 7.710000e-33 152.0
35 TraesCS2B01G232100 chr5D 87.011 793 89 8 3671 4453 562814153 562813365 0.000000e+00 881.0
36 TraesCS2B01G232100 chr5D 85.789 190 18 3 2897 3077 220776187 220775998 4.550000e-45 193.0
37 TraesCS2B01G232100 chr5A 79.606 559 65 22 3136 3682 486062420 486062941 5.480000e-94 355.0
38 TraesCS2B01G232100 chr5A 87.662 308 27 5 2788 3085 486062117 486062423 9.170000e-92 348.0
39 TraesCS2B01G232100 chr6B 91.342 231 20 0 2754 2984 174557121 174557351 2.590000e-82 316.0
40 TraesCS2B01G232100 chr6B 84.615 104 11 4 2096 2199 42006961 42007059 1.020000e-16 99.0
41 TraesCS2B01G232100 chr3B 83.478 230 15 9 2097 2307 180895466 180895241 4.550000e-45 193.0
42 TraesCS2B01G232100 chr7A 80.085 236 21 7 2096 2310 134457319 134457089 7.710000e-33 152.0
43 TraesCS2B01G232100 chr1A 85.816 141 17 3 2741 2879 449670130 449669991 3.590000e-31 147.0
44 TraesCS2B01G232100 chr1A 77.733 247 31 6 2093 2319 112946490 112946732 3.610000e-26 130.0
45 TraesCS2B01G232100 chr6D 83.974 156 20 3 2096 2251 367003183 367003033 1.290000e-30 145.0
46 TraesCS2B01G232100 chr6D 82.051 156 22 2 2096 2251 130277451 130277302 1.300000e-25 128.0
47 TraesCS2B01G232100 chr6D 95.918 49 1 1 2096 2144 25806291 25806338 1.330000e-10 78.7
48 TraesCS2B01G232100 chr3A 83.648 159 21 3 2093 2251 345564447 345564600 1.290000e-30 145.0
49 TraesCS2B01G232100 chr4A 79.060 234 17 16 2114 2319 191040645 191040874 1.010000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G232100 chr2B 229786369 229790821 4452 True 8224.000000 8224 100.000000 1 4453 1 chr2B.!!$R1 4452
1 TraesCS2B01G232100 chr2B 588794242 588795030 788 False 953.000000 953 88.636000 3671 4453 1 chr2B.!!$F1 782
2 TraesCS2B01G232100 chrUn 64600670 64601450 780 False 1170.000000 1170 93.862000 3681 4453 1 chrUn.!!$F1 772
3 TraesCS2B01G232100 chr7B 542751459 542752230 771 True 1157.000000 1157 93.920000 3691 4453 1 chr7B.!!$R1 762
4 TraesCS2B01G232100 chr7B 263428957 263429732 775 False 1114.000000 1114 92.720000 3681 4453 1 chr7B.!!$F3 772
5 TraesCS2B01G232100 chr7B 108992493 108993262 769 False 1068.000000 1068 91.850000 3690 4453 1 chr7B.!!$F1 763
6 TraesCS2B01G232100 chr2A 131746543 131747319 776 False 1151.000000 1151 93.582000 3684 4453 1 chr2A.!!$F1 769
7 TraesCS2B01G232100 chr2A 182007540 182011407 3867 True 508.571429 828 91.260857 1 3690 7 chr2A.!!$R1 3689
8 TraesCS2B01G232100 chr4B 207672964 207673734 770 True 1140.000000 1140 93.540000 3690 4453 1 chr4B.!!$R1 763
9 TraesCS2B01G232100 chr4B 145018820 145019598 778 False 1098.000000 1098 92.318000 3684 4453 1 chr4B.!!$F1 769
10 TraesCS2B01G232100 chr2D 594935951 594936722 771 False 817.000000 817 85.861000 3681 4453 1 chr2D.!!$F3 772
11 TraesCS2B01G232100 chr2D 168424104 168427496 3392 False 578.300000 1037 90.429857 1 3686 7 chr2D.!!$F4 3685
12 TraesCS2B01G232100 chr5B 445045671 445046453 782 True 957.000000 957 88.931000 3678 4453 1 chr5B.!!$R1 775
13 TraesCS2B01G232100 chr5B 445062047 445062828 781 True 957.000000 957 88.931000 3678 4453 1 chr5B.!!$R2 775
14 TraesCS2B01G232100 chr7D 489367496 489368254 758 True 926.000000 926 88.714000 3695 4453 1 chr7D.!!$R3 758
15 TraesCS2B01G232100 chr5D 562813365 562814153 788 True 881.000000 881 87.011000 3671 4453 1 chr5D.!!$R2 782
16 TraesCS2B01G232100 chr5A 486062117 486062941 824 False 351.500000 355 83.634000 2788 3682 2 chr5A.!!$F1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1441 0.106419 CTAGGACGAGGAGAAGGGCT 60.106 60.000 0.00 0.00 0.00 5.19 F
1428 1932 0.392998 GTGGGATGAGCCGAACACAT 60.393 55.000 0.00 0.00 37.63 3.21 F
1624 2169 1.069823 AGACCATAGCTCGAGCAATGG 59.930 52.381 36.87 27.12 45.16 3.16 F
2295 2922 1.822371 ACACGAAAAACAAAGTGGGCT 59.178 42.857 0.00 0.00 38.78 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2520 3148 0.036732 GGTGACAGGATGCTGTGGAA 59.963 55.0 25.78 7.24 42.53 3.53 R
3136 3777 0.104671 GCGCATATTTGGGTGCCAAT 59.895 50.0 0.30 0.00 43.55 3.16 R
3137 3778 0.969917 AGCGCATATTTGGGTGCCAA 60.970 50.0 11.47 0.00 42.29 4.52 R
3789 4446 0.036448 TGGTTAAACGGCATTCGGGA 59.964 50.0 0.00 0.00 44.45 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.529581 TGAAAAATTCAGGTCAGGAAACC 57.470 39.130 0.00 0.00 39.80 3.27
52 53 4.037446 TGAAAAATTCAGGTCAGGAAACCG 59.963 41.667 0.00 0.00 44.49 4.44
53 54 2.951229 AATTCAGGTCAGGAAACCGT 57.049 45.000 0.00 0.00 44.49 4.83
54 55 2.951229 ATTCAGGTCAGGAAACCGTT 57.049 45.000 0.00 0.00 44.49 4.44
55 56 2.721425 TTCAGGTCAGGAAACCGTTT 57.279 45.000 0.00 0.00 44.49 3.60
56 57 2.249844 TCAGGTCAGGAAACCGTTTC 57.750 50.000 14.58 14.58 44.49 2.78
57 58 1.766496 TCAGGTCAGGAAACCGTTTCT 59.234 47.619 20.63 6.96 44.49 2.52
58 59 2.171870 TCAGGTCAGGAAACCGTTTCTT 59.828 45.455 20.63 12.60 44.49 2.52
59 60 2.949644 CAGGTCAGGAAACCGTTTCTTT 59.050 45.455 20.63 9.17 44.49 2.52
60 61 3.380320 CAGGTCAGGAAACCGTTTCTTTT 59.620 43.478 20.63 7.05 44.49 2.27
61 62 4.021229 AGGTCAGGAAACCGTTTCTTTTT 58.979 39.130 20.63 4.97 44.49 1.94
79 80 2.900716 TTTCCTTTCCTTTTTGCCGG 57.099 45.000 0.00 0.00 0.00 6.13
80 81 2.074729 TTCCTTTCCTTTTTGCCGGA 57.925 45.000 5.05 0.00 0.00 5.14
113 114 0.524392 TTTTGGTTTGCTGTGACGCG 60.524 50.000 3.53 3.53 0.00 6.01
119 120 3.741830 TTGCTGTGACGCGGGTTCA 62.742 57.895 12.47 1.53 0.00 3.18
198 199 1.499049 GTTTGAGCCGTCGTTCTCTT 58.501 50.000 11.43 0.00 0.00 2.85
202 203 1.340248 TGAGCCGTCGTTCTCTTTCTT 59.660 47.619 11.43 0.00 0.00 2.52
203 204 1.987074 GAGCCGTCGTTCTCTTTCTTC 59.013 52.381 4.95 0.00 0.00 2.87
209 210 1.067974 TCGTTCTCTTTCTTCGGTGCA 59.932 47.619 0.00 0.00 0.00 4.57
222 223 2.045045 GTGCAGTGCATGGCCCTA 60.045 61.111 22.87 0.00 41.91 3.53
251 282 0.320374 TCATCGCAGAAAAGGGACGT 59.680 50.000 0.00 0.00 43.58 4.34
252 283 0.721718 CATCGCAGAAAAGGGACGTC 59.278 55.000 7.13 7.13 43.58 4.34
312 343 1.981254 TTCCGGTCGATTCGTGTAAC 58.019 50.000 0.00 0.00 0.00 2.50
345 376 3.891049 ACTTGTGGCAGGGAAAGATATC 58.109 45.455 0.00 0.00 0.00 1.63
356 387 3.549794 GGAAAGATATCCAGTTGCTGCT 58.450 45.455 0.00 0.00 39.42 4.24
362 393 1.874345 ATCCAGTTGCTGCTTGCTGC 61.874 55.000 15.80 15.80 43.37 5.25
388 419 7.086230 AGTATTAACTCGTTGAGGACTACTG 57.914 40.000 0.00 0.00 33.35 2.74
389 420 2.726832 AACTCGTTGAGGACTACTGC 57.273 50.000 0.00 0.00 33.35 4.40
390 421 1.912417 ACTCGTTGAGGACTACTGCT 58.088 50.000 0.00 0.00 33.35 4.24
425 457 2.255252 CGGCAAAAACGCAGAGGG 59.745 61.111 0.00 0.00 0.00 4.30
434 466 0.676782 AACGCAGAGGGGCACAATAC 60.677 55.000 0.00 0.00 0.00 1.89
466 501 3.117491 TCCTCGCCTGATCAATCAATC 57.883 47.619 0.00 0.00 36.18 2.67
467 502 1.797046 CCTCGCCTGATCAATCAATCG 59.203 52.381 0.00 7.03 36.18 3.34
468 503 2.546584 CCTCGCCTGATCAATCAATCGA 60.547 50.000 0.00 12.55 37.87 3.59
469 504 3.324117 CTCGCCTGATCAATCAATCGAT 58.676 45.455 13.18 0.00 38.75 3.59
564 691 2.496899 AGTCATGGGTTTGCTACAGG 57.503 50.000 0.00 0.00 0.00 4.00
579 1018 4.202274 TGCTACAGGCACTTAACTGTTACA 60.202 41.667 0.00 0.00 45.03 2.41
597 1036 3.460857 ACAGTATCATCTTCCGCTTCC 57.539 47.619 0.00 0.00 0.00 3.46
603 1042 1.067669 TCATCTTCCGCTTCCTGATCG 59.932 52.381 0.00 0.00 0.00 3.69
609 1048 0.598680 CCGCTTCCTGATCGATCACC 60.599 60.000 23.99 9.09 32.50 4.02
721 1164 4.767409 GGGCCAGATTTGGGAAATATAGAC 59.233 45.833 4.39 0.00 45.16 2.59
738 1181 5.904362 ATAGACATTTGGGCTCAGTTTTC 57.096 39.130 0.00 0.00 0.00 2.29
739 1182 3.837355 AGACATTTGGGCTCAGTTTTCT 58.163 40.909 0.00 0.00 0.00 2.52
740 1183 4.218312 AGACATTTGGGCTCAGTTTTCTT 58.782 39.130 0.00 0.00 0.00 2.52
741 1184 4.651045 AGACATTTGGGCTCAGTTTTCTTT 59.349 37.500 0.00 0.00 0.00 2.52
767 1210 0.247460 GGGAAATGTTTGGGCTCAGC 59.753 55.000 0.00 0.00 0.00 4.26
776 1221 2.628178 GTTTGGGCTCAGCTTTTTAGGT 59.372 45.455 0.00 0.00 0.00 3.08
785 1230 5.047306 GCTCAGCTTTTTAGGTAATTTGGGT 60.047 40.000 0.00 0.00 0.00 4.51
786 1231 6.584185 TCAGCTTTTTAGGTAATTTGGGTC 57.416 37.500 0.00 0.00 0.00 4.46
812 1259 2.284625 AGAGACGTCATGGGCCCA 60.285 61.111 30.92 30.92 0.00 5.36
842 1289 2.076863 CTAGCCGTCCTTCCAAAACTG 58.923 52.381 0.00 0.00 0.00 3.16
988 1441 0.106419 CTAGGACGAGGAGAAGGGCT 60.106 60.000 0.00 0.00 0.00 5.19
1148 1607 5.048782 TGTCTTTCTTCATCGATTTGTTGGG 60.049 40.000 0.00 0.00 0.00 4.12
1206 1669 0.874175 TTTCGCAGCGATGGATACGG 60.874 55.000 20.32 0.00 42.51 4.02
1285 1748 4.331717 AGCAAAAGGATTACACCGATTACG 59.668 41.667 0.00 0.00 39.43 3.18
1292 1755 6.675987 AGGATTACACCGATTACGTCTTATC 58.324 40.000 0.00 0.00 37.88 1.75
1293 1756 6.263842 AGGATTACACCGATTACGTCTTATCA 59.736 38.462 0.00 0.00 37.88 2.15
1309 1772 9.175312 ACGTCTTATCACTCTCTCTGTTTATTA 57.825 33.333 0.00 0.00 0.00 0.98
1310 1773 9.440784 CGTCTTATCACTCTCTCTGTTTATTAC 57.559 37.037 0.00 0.00 0.00 1.89
1313 1776 9.658475 CTTATCACTCTCTCTGTTTATTACTCG 57.342 37.037 0.00 0.00 0.00 4.18
1315 1778 8.734218 ATCACTCTCTCTGTTTATTACTCGTA 57.266 34.615 0.00 0.00 0.00 3.43
1316 1779 8.199176 TCACTCTCTCTGTTTATTACTCGTAG 57.801 38.462 0.00 0.00 0.00 3.51
1317 1780 6.908284 CACTCTCTCTGTTTATTACTCGTAGC 59.092 42.308 0.00 0.00 0.00 3.58
1319 1782 7.017498 TCTCTCTGTTTATTACTCGTAGCTG 57.983 40.000 0.00 0.00 0.00 4.24
1320 1783 6.038382 TCTCTCTGTTTATTACTCGTAGCTGG 59.962 42.308 0.00 0.00 0.00 4.85
1321 1784 5.651139 TCTCTGTTTATTACTCGTAGCTGGT 59.349 40.000 0.00 0.00 0.00 4.00
1322 1785 6.825213 TCTCTGTTTATTACTCGTAGCTGGTA 59.175 38.462 0.00 0.00 0.00 3.25
1323 1786 7.501559 TCTCTGTTTATTACTCGTAGCTGGTAT 59.498 37.037 0.00 0.00 0.00 2.73
1326 1789 6.321945 TGTTTATTACTCGTAGCTGGTATGGA 59.678 38.462 0.00 0.00 0.00 3.41
1369 1832 5.598416 TCTTTCTGAGTTCACTGACTTGA 57.402 39.130 0.00 0.00 0.00 3.02
1373 1870 3.132824 TCTGAGTTCACTGACTTGAGCAA 59.867 43.478 0.00 0.00 0.00 3.91
1428 1932 0.392998 GTGGGATGAGCCGAACACAT 60.393 55.000 0.00 0.00 37.63 3.21
1462 1966 9.520515 AGTTTGACATTACCATTATGAAGAACT 57.479 29.630 0.00 0.00 0.00 3.01
1463 1967 9.774742 GTTTGACATTACCATTATGAAGAACTC 57.225 33.333 0.00 0.00 0.00 3.01
1464 1968 9.739276 TTTGACATTACCATTATGAAGAACTCT 57.261 29.630 0.00 0.00 0.00 3.24
1465 1969 8.948631 TGACATTACCATTATGAAGAACTCTC 57.051 34.615 0.00 0.00 0.00 3.20
1512 2028 2.779755 TCGTGTTTATGCATGAGGGT 57.220 45.000 10.16 0.00 31.49 4.34
1550 2067 1.210870 CATGTGCAAGCAAGCGTTTT 58.789 45.000 0.00 0.00 37.31 2.43
1557 2074 3.066900 TGCAAGCAAGCGTTTTTACCTTA 59.933 39.130 0.00 0.00 37.31 2.69
1574 2119 3.288092 CCTTATTTACAGGAGTTGGGCC 58.712 50.000 0.00 0.00 32.41 5.80
1575 2120 3.308832 CCTTATTTACAGGAGTTGGGCCA 60.309 47.826 0.00 0.00 32.41 5.36
1601 2146 1.610624 GCCGAGATCAAAAGGTCCACA 60.611 52.381 0.00 0.00 0.00 4.17
1624 2169 1.069823 AGACCATAGCTCGAGCAATGG 59.930 52.381 36.87 27.12 45.16 3.16
1632 2177 2.659234 GCTCGAGCAATGGTACAGCAG 61.659 57.143 31.91 0.00 41.60 4.24
1646 2191 7.786178 TGGTACAGCAGCATAAATAAGTAAG 57.214 36.000 0.00 0.00 0.00 2.34
1708 2253 4.641989 CCAATAGTTGAAAGCCTGCACTAT 59.358 41.667 0.00 0.00 0.00 2.12
1738 2283 4.563976 GCTTCATCATTGATTTTGTTCGGG 59.436 41.667 0.00 0.00 0.00 5.14
1813 2358 6.372659 ACTTTGAAGACATTGTCGAGCATTAT 59.627 34.615 11.01 0.00 37.67 1.28
1817 2362 4.626042 AGACATTGTCGAGCATTATCTCC 58.374 43.478 11.01 0.00 37.67 3.71
1840 2385 7.557724 TCCCATTTGTATGTGTAATCGAGTTA 58.442 34.615 0.00 0.00 0.00 2.24
1949 2494 7.027874 ACTAGGATGGTTGGTCTGAAAATTA 57.972 36.000 0.00 0.00 0.00 1.40
2009 2636 6.371809 ACAAAATACCTGGTATAATGCGTG 57.628 37.500 19.23 12.68 0.00 5.34
2010 2637 5.883673 ACAAAATACCTGGTATAATGCGTGT 59.116 36.000 19.23 13.20 0.00 4.49
2027 2654 2.340337 GTGTCATCCATTGCTTTTGCC 58.660 47.619 0.00 0.00 46.87 4.52
2048 2675 1.833630 TCCCTCATCTGGTTGCTGTAG 59.166 52.381 0.00 0.00 0.00 2.74
2053 2680 3.664107 TCATCTGGTTGCTGTAGTTGTC 58.336 45.455 0.00 0.00 0.00 3.18
2054 2681 3.070878 TCATCTGGTTGCTGTAGTTGTCA 59.929 43.478 0.00 0.00 0.00 3.58
2057 2684 3.070878 TCTGGTTGCTGTAGTTGTCATGA 59.929 43.478 0.00 0.00 0.00 3.07
2063 2690 4.397420 TGCTGTAGTTGTCATGACCAAAT 58.603 39.130 22.85 16.98 0.00 2.32
2071 2698 3.379240 TGTCATGACCAAATTGCAAACG 58.621 40.909 22.85 0.00 0.00 3.60
2084 2711 7.381139 CCAAATTGCAAACGTACTATCTTTTGT 59.619 33.333 1.71 0.00 31.97 2.83
2096 2723 8.757789 CGTACTATCTTTTGTGTTGTTCAAGTA 58.242 33.333 0.00 0.00 0.00 2.24
2097 2724 9.859692 GTACTATCTTTTGTGTTGTTCAAGTAC 57.140 33.333 0.00 0.00 0.00 2.73
2098 2725 8.732746 ACTATCTTTTGTGTTGTTCAAGTACT 57.267 30.769 0.00 0.00 0.00 2.73
2099 2726 8.827677 ACTATCTTTTGTGTTGTTCAAGTACTC 58.172 33.333 0.00 0.00 0.00 2.59
2102 2729 4.497291 TTGTGTTGTTCAAGTACTCCCT 57.503 40.909 0.00 0.00 0.00 4.20
2104 2731 3.181458 TGTGTTGTTCAAGTACTCCCTCC 60.181 47.826 0.00 0.00 0.00 4.30
2107 2734 2.537143 TGTTCAAGTACTCCCTCCCTC 58.463 52.381 0.00 0.00 0.00 4.30
2110 2737 3.666345 TCAAGTACTCCCTCCCTCTAC 57.334 52.381 0.00 0.00 0.00 2.59
2111 2738 3.199671 TCAAGTACTCCCTCCCTCTACT 58.800 50.000 0.00 0.00 0.00 2.57
2112 2739 4.378047 TCAAGTACTCCCTCCCTCTACTA 58.622 47.826 0.00 0.00 0.00 1.82
2113 2740 4.792426 TCAAGTACTCCCTCCCTCTACTAA 59.208 45.833 0.00 0.00 0.00 2.24
2114 2741 5.435707 TCAAGTACTCCCTCCCTCTACTAAT 59.564 44.000 0.00 0.00 0.00 1.73
2115 2742 6.622766 TCAAGTACTCCCTCCCTCTACTAATA 59.377 42.308 0.00 0.00 0.00 0.98
2116 2743 6.452757 AGTACTCCCTCCCTCTACTAATAC 57.547 45.833 0.00 0.00 0.00 1.89
2117 2744 5.915900 AGTACTCCCTCCCTCTACTAATACA 59.084 44.000 0.00 0.00 0.00 2.29
2118 2745 5.745988 ACTCCCTCCCTCTACTAATACAA 57.254 43.478 0.00 0.00 0.00 2.41
2119 2746 5.707495 ACTCCCTCCCTCTACTAATACAAG 58.293 45.833 0.00 0.00 0.00 3.16
2120 2747 5.076057 TCCCTCCCTCTACTAATACAAGG 57.924 47.826 0.00 0.00 0.00 3.61
2121 2748 3.579151 CCCTCCCTCTACTAATACAAGGC 59.421 52.174 0.00 0.00 0.00 4.35
2122 2749 3.579151 CCTCCCTCTACTAATACAAGGCC 59.421 52.174 0.00 0.00 0.00 5.19
2123 2750 4.223953 CTCCCTCTACTAATACAAGGCCA 58.776 47.826 5.01 0.00 0.00 5.36
2124 2751 3.965347 TCCCTCTACTAATACAAGGCCAC 59.035 47.826 5.01 0.00 0.00 5.01
2125 2752 3.967987 CCCTCTACTAATACAAGGCCACT 59.032 47.826 5.01 0.00 0.00 4.00
2126 2753 4.409247 CCCTCTACTAATACAAGGCCACTT 59.591 45.833 5.01 0.00 37.43 3.16
2127 2754 5.453480 CCCTCTACTAATACAAGGCCACTTC 60.453 48.000 5.01 0.00 33.81 3.01
2128 2755 5.128827 CCTCTACTAATACAAGGCCACTTCA 59.871 44.000 5.01 0.00 33.81 3.02
2129 2756 6.183361 CCTCTACTAATACAAGGCCACTTCAT 60.183 42.308 5.01 0.00 33.81 2.57
2130 2757 7.015292 CCTCTACTAATACAAGGCCACTTCATA 59.985 40.741 5.01 0.00 33.81 2.15
2131 2758 8.492415 TCTACTAATACAAGGCCACTTCATAT 57.508 34.615 5.01 0.00 33.81 1.78
2132 2759 8.934697 TCTACTAATACAAGGCCACTTCATATT 58.065 33.333 5.01 2.91 33.81 1.28
2133 2760 9.561069 CTACTAATACAAGGCCACTTCATATTT 57.439 33.333 5.01 0.00 33.81 1.40
2134 2761 8.823220 ACTAATACAAGGCCACTTCATATTTT 57.177 30.769 5.01 0.00 33.81 1.82
2135 2762 9.255029 ACTAATACAAGGCCACTTCATATTTTT 57.745 29.630 5.01 0.00 33.81 1.94
2141 2768 9.200817 ACAAGGCCACTTCATATTTTTATATGT 57.799 29.630 5.01 0.00 36.26 2.29
2142 2769 9.683069 CAAGGCCACTTCATATTTTTATATGTC 57.317 33.333 5.01 0.00 36.26 3.06
2143 2770 9.646522 AAGGCCACTTCATATTTTTATATGTCT 57.353 29.630 5.01 0.00 36.26 3.41
2144 2771 9.646522 AGGCCACTTCATATTTTTATATGTCTT 57.353 29.630 5.01 0.00 36.26 3.01
2172 2799 9.892130 AACTTTGACCATTTATTTTACCAACAA 57.108 25.926 0.00 0.00 0.00 2.83
2173 2800 9.892130 ACTTTGACCATTTATTTTACCAACAAA 57.108 25.926 0.00 0.00 0.00 2.83
2177 2804 9.838339 TGACCATTTATTTTACCAACAAAATGT 57.162 25.926 4.50 0.00 38.31 2.71
2211 2838 9.995003 ATACCATAAAAAGTGCATTTGAAAGAA 57.005 25.926 0.00 0.00 0.00 2.52
2212 2839 8.141835 ACCATAAAAAGTGCATTTGAAAGAAC 57.858 30.769 0.00 0.00 0.00 3.01
2213 2840 7.986889 ACCATAAAAAGTGCATTTGAAAGAACT 59.013 29.630 0.00 0.00 0.00 3.01
2214 2841 8.829612 CCATAAAAAGTGCATTTGAAAGAACTT 58.170 29.630 0.00 0.00 0.00 2.66
2215 2842 9.853921 CATAAAAAGTGCATTTGAAAGAACTTC 57.146 29.630 0.00 0.00 34.31 3.01
2216 2843 9.822185 ATAAAAAGTGCATTTGAAAGAACTTCT 57.178 25.926 0.00 0.00 34.86 2.85
2217 2844 7.761651 AAAAGTGCATTTGAAAGAACTTCTC 57.238 32.000 0.00 0.00 34.86 2.87
2218 2845 5.100751 AGTGCATTTGAAAGAACTTCTCG 57.899 39.130 0.00 0.00 34.86 4.04
2219 2846 4.816385 AGTGCATTTGAAAGAACTTCTCGA 59.184 37.500 0.00 0.00 34.86 4.04
2220 2847 5.471456 AGTGCATTTGAAAGAACTTCTCGAT 59.529 36.000 0.00 0.00 34.86 3.59
2221 2848 6.650807 AGTGCATTTGAAAGAACTTCTCGATA 59.349 34.615 0.00 0.00 34.86 2.92
2222 2849 7.173218 AGTGCATTTGAAAGAACTTCTCGATAA 59.827 33.333 0.00 0.00 34.86 1.75
2223 2850 7.965107 GTGCATTTGAAAGAACTTCTCGATAAT 59.035 33.333 0.00 0.00 34.86 1.28
2224 2851 9.161629 TGCATTTGAAAGAACTTCTCGATAATA 57.838 29.630 0.00 0.00 34.86 0.98
2289 2916 7.099666 TCAAAGTTTGACACGAAAAACAAAG 57.900 32.000 14.35 0.00 38.48 2.77
2290 2917 6.697892 TCAAAGTTTGACACGAAAAACAAAGT 59.302 30.769 14.35 0.00 38.48 2.66
2291 2918 6.446659 AAGTTTGACACGAAAAACAAAGTG 57.553 33.333 0.00 0.00 38.48 3.16
2292 2919 4.920927 AGTTTGACACGAAAAACAAAGTGG 59.079 37.500 0.00 0.00 38.48 4.00
2293 2920 3.495670 TGACACGAAAAACAAAGTGGG 57.504 42.857 0.00 0.00 38.78 4.61
2294 2921 2.190161 GACACGAAAAACAAAGTGGGC 58.810 47.619 0.00 0.00 38.78 5.36
2295 2922 1.822371 ACACGAAAAACAAAGTGGGCT 59.178 42.857 0.00 0.00 38.78 5.19
2296 2923 2.232696 ACACGAAAAACAAAGTGGGCTT 59.767 40.909 0.00 0.00 38.78 4.35
2297 2924 2.602660 CACGAAAAACAAAGTGGGCTTG 59.397 45.455 0.00 0.00 34.71 4.01
2298 2925 2.232696 ACGAAAAACAAAGTGGGCTTGT 59.767 40.909 0.00 0.00 34.71 3.16
2299 2926 3.444388 ACGAAAAACAAAGTGGGCTTGTA 59.556 39.130 0.00 0.00 34.71 2.41
2300 2927 4.098807 ACGAAAAACAAAGTGGGCTTGTAT 59.901 37.500 0.00 0.00 34.71 2.29
2301 2928 5.299782 ACGAAAAACAAAGTGGGCTTGTATA 59.700 36.000 0.00 0.00 34.71 1.47
2302 2929 6.015772 ACGAAAAACAAAGTGGGCTTGTATAT 60.016 34.615 0.00 0.00 34.71 0.86
2303 2930 7.175293 ACGAAAAACAAAGTGGGCTTGTATATA 59.825 33.333 0.00 0.00 34.71 0.86
2304 2931 8.024285 CGAAAAACAAAGTGGGCTTGTATATAA 58.976 33.333 0.00 0.00 34.71 0.98
2305 2932 9.699703 GAAAAACAAAGTGGGCTTGTATATAAA 57.300 29.630 0.00 0.00 34.71 1.40
2309 2936 9.651913 AACAAAGTGGGCTTGTATATAAAAATG 57.348 29.630 0.00 0.00 34.71 2.32
2310 2937 9.030452 ACAAAGTGGGCTTGTATATAAAAATGA 57.970 29.630 0.00 0.00 34.71 2.57
2311 2938 9.868277 CAAAGTGGGCTTGTATATAAAAATGAA 57.132 29.630 0.00 0.00 34.71 2.57
2313 2940 8.237811 AGTGGGCTTGTATATAAAAATGAAGG 57.762 34.615 0.00 0.00 0.00 3.46
2314 2941 7.287696 AGTGGGCTTGTATATAAAAATGAAGGG 59.712 37.037 0.00 0.00 0.00 3.95
2315 2942 6.041523 TGGGCTTGTATATAAAAATGAAGGGC 59.958 38.462 0.00 0.00 0.00 5.19
2316 2943 6.149633 GGCTTGTATATAAAAATGAAGGGCG 58.850 40.000 0.00 0.00 0.00 6.13
2317 2944 6.238925 GGCTTGTATATAAAAATGAAGGGCGT 60.239 38.462 0.00 0.00 0.00 5.68
2318 2945 7.040961 GGCTTGTATATAAAAATGAAGGGCGTA 60.041 37.037 0.00 0.00 0.00 4.42
2319 2946 8.347035 GCTTGTATATAAAAATGAAGGGCGTAA 58.653 33.333 0.00 0.00 0.00 3.18
2322 2949 8.293867 TGTATATAAAAATGAAGGGCGTAATGC 58.706 33.333 0.00 0.00 45.38 3.56
2362 2990 2.380064 TCCATGGGAAAAGCTGTTGT 57.620 45.000 13.02 0.00 0.00 3.32
2369 2997 2.169561 GGGAAAAGCTGTTGTGGGAAAA 59.830 45.455 0.00 0.00 0.00 2.29
2400 3028 8.033626 AGTCACTATAGGTTAAAGTAGTGCAAC 58.966 37.037 4.43 2.20 42.20 4.17
2410 3038 7.913821 GGTTAAAGTAGTGCAACAATAATAGGC 59.086 37.037 0.00 0.00 41.43 3.93
2449 3077 3.942115 GAGAGTTATTGGAACTTGCCTCC 59.058 47.826 0.00 0.00 0.00 4.30
2520 3148 6.783708 TTTGTAAAGTTTGACACCCTTCAT 57.216 33.333 0.00 0.00 0.00 2.57
2523 3151 4.937201 AAAGTTTGACACCCTTCATTCC 57.063 40.909 0.00 0.00 0.00 3.01
2547 3175 2.575279 AGCATCCTGTCACCTTCTCATT 59.425 45.455 0.00 0.00 0.00 2.57
2556 3184 5.800296 TGTCACCTTCTCATTAATTCCGAA 58.200 37.500 0.00 0.00 0.00 4.30
2625 3254 6.630203 TCAACCCAAGGCTAGTTAATCTTA 57.370 37.500 0.00 0.00 0.00 2.10
2648 3277 8.691661 TTATATTCATTCCCTAGCTTTTCACC 57.308 34.615 0.00 0.00 0.00 4.02
2664 3294 5.557576 TTTCACCATAGATCCTGAGGATG 57.442 43.478 20.60 5.71 43.27 3.51
2674 3304 5.332743 AGATCCTGAGGATGAAGAGTATCC 58.667 45.833 20.60 0.00 43.27 2.59
2676 3306 3.117474 TCCTGAGGATGAAGAGTATCCGT 60.117 47.826 0.00 0.00 46.93 4.69
2747 3377 8.893727 ACAAATATACAAGCATAACAGGAAGAC 58.106 33.333 0.00 0.00 0.00 3.01
2750 3380 9.988815 AATATACAAGCATAACAGGAAGACTAG 57.011 33.333 0.00 0.00 0.00 2.57
2757 3387 7.947282 AGCATAACAGGAAGACTAGTAGAATC 58.053 38.462 3.59 0.00 0.00 2.52
2883 3515 6.222038 TGTCACTGGTGTTATATCTTCCTC 57.778 41.667 0.53 0.00 0.00 3.71
2888 3520 5.011125 ACTGGTGTTATATCTTCCTCATCCG 59.989 44.000 0.00 0.00 0.00 4.18
2895 3527 7.888546 TGTTATATCTTCCTCATCCGTCAGATA 59.111 37.037 0.00 0.00 32.37 1.98
2984 3616 5.123979 GGCTTCCTATTAAAGTTGTGTGGAG 59.876 44.000 0.00 0.00 0.00 3.86
2993 3626 2.561569 AGTTGTGTGGAGTGCACTAAC 58.438 47.619 21.73 20.82 37.70 2.34
3011 3644 6.348213 GCACTAACAAGTGGACGAAATTATGT 60.348 38.462 7.57 0.00 39.97 2.29
3040 3673 9.868277 CTATGGTATTCTTTATTCTCCTAGCTG 57.132 37.037 0.00 0.00 0.00 4.24
3057 3698 2.152016 GCTGCTTCCGGTTAAAGTTCT 58.848 47.619 0.00 0.00 0.00 3.01
3085 3726 8.704668 TGATATGCTCCTGAAAGTGAATTAGTA 58.295 33.333 0.00 0.00 0.00 1.82
3086 3727 9.547753 GATATGCTCCTGAAAGTGAATTAGTAA 57.452 33.333 0.00 0.00 0.00 2.24
3087 3728 7.856145 ATGCTCCTGAAAGTGAATTAGTAAG 57.144 36.000 0.00 0.00 0.00 2.34
3088 3729 7.004555 TGCTCCTGAAAGTGAATTAGTAAGA 57.995 36.000 0.00 0.00 0.00 2.10
3089 3730 7.099764 TGCTCCTGAAAGTGAATTAGTAAGAG 58.900 38.462 0.00 0.00 0.00 2.85
3090 3731 7.100409 GCTCCTGAAAGTGAATTAGTAAGAGT 58.900 38.462 0.00 0.00 0.00 3.24
3091 3732 7.604545 GCTCCTGAAAGTGAATTAGTAAGAGTT 59.395 37.037 0.00 0.00 0.00 3.01
3092 3733 9.495572 CTCCTGAAAGTGAATTAGTAAGAGTTT 57.504 33.333 0.00 0.00 0.00 2.66
3093 3734 9.490379 TCCTGAAAGTGAATTAGTAAGAGTTTC 57.510 33.333 10.20 10.20 0.00 2.78
3094 3735 9.273016 CCTGAAAGTGAATTAGTAAGAGTTTCA 57.727 33.333 15.11 15.11 35.62 2.69
3166 3807 3.504863 CAAATATGCGCTTGTGCTTTCT 58.495 40.909 9.73 0.00 36.97 2.52
3173 3814 2.644078 CGCTTGTGCTTTCTTTCTGTC 58.356 47.619 0.00 0.00 36.97 3.51
3176 3817 3.979495 GCTTGTGCTTTCTTTCTGTCATG 59.021 43.478 0.00 0.00 36.03 3.07
3177 3818 4.498682 GCTTGTGCTTTCTTTCTGTCATGT 60.499 41.667 0.00 0.00 36.03 3.21
3197 3841 3.460340 TGTCTTACCTGTTTCCCTTGGAA 59.540 43.478 0.00 0.00 40.27 3.53
3219 3863 3.808728 TGTGTTCTGTTTCTTCCAGGAG 58.191 45.455 0.00 0.00 0.00 3.69
3220 3864 3.454447 TGTGTTCTGTTTCTTCCAGGAGA 59.546 43.478 0.00 0.00 0.00 3.71
3221 3865 3.810386 GTGTTCTGTTTCTTCCAGGAGAC 59.190 47.826 0.00 0.00 0.00 3.36
3222 3866 3.181454 TGTTCTGTTTCTTCCAGGAGACC 60.181 47.826 0.00 0.00 0.00 3.85
3223 3867 2.689658 TCTGTTTCTTCCAGGAGACCA 58.310 47.619 0.00 0.00 0.00 4.02
3224 3868 2.634940 TCTGTTTCTTCCAGGAGACCAG 59.365 50.000 0.00 0.05 0.00 4.00
3225 3869 1.699634 TGTTTCTTCCAGGAGACCAGG 59.300 52.381 0.00 0.00 0.00 4.45
3234 3878 2.370189 CCAGGAGACCAGGACATATTCC 59.630 54.545 0.00 0.00 46.33 3.01
3252 3896 5.909621 ATTCCTGGCATATGCATAATGAC 57.090 39.130 28.07 11.98 44.36 3.06
3509 4166 8.554490 AGTATATTTCCACCTGTAGATCAACT 57.446 34.615 0.00 0.00 0.00 3.16
3590 4247 5.571741 TCTTTACAACGCTTAAGAGATGACG 59.428 40.000 20.39 9.43 0.00 4.35
3601 4258 2.084546 AGAGATGACGTGTGATGACGA 58.915 47.619 0.00 0.00 42.10 4.20
3602 4259 2.488153 AGAGATGACGTGTGATGACGAA 59.512 45.455 0.00 0.00 42.10 3.85
3603 4260 3.057526 AGAGATGACGTGTGATGACGAAA 60.058 43.478 0.00 0.00 42.10 3.46
3609 4266 3.508762 ACGTGTGATGACGAAAGGTATC 58.491 45.455 0.00 0.00 42.10 2.24
3663 4320 9.940166 TTTCATCACATTCTTTGATATCAATCG 57.060 29.630 18.61 12.72 35.55 3.34
3716 4373 5.012561 ACAAATGCATTTTTGCCCCTAGTTA 59.987 36.000 21.95 0.00 39.65 2.24
3724 4381 6.397217 TTTTTGCCCCTAGTTAGAACCTAT 57.603 37.500 0.00 0.00 0.00 2.57
3789 4446 3.118592 CCTTAGATTTTGCTCCGAGGTCT 60.119 47.826 0.00 0.00 0.00 3.85
3804 4469 0.108041 GGTCTCCCGAATGCCGTTTA 60.108 55.000 0.00 0.00 36.31 2.01
3823 4488 8.552865 GCCGTTTAACCAATACTTTGAAAATTT 58.447 29.630 0.00 0.00 34.60 1.82
3949 4614 7.439157 ACCGTTTAAACAACCTAAGGTTATC 57.561 36.000 18.07 0.00 45.01 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.197983 TCCGGCAAAAAGGAAAGGAAAAA 59.802 39.130 0.00 0.00 32.86 1.94
59 60 2.766828 TCCGGCAAAAAGGAAAGGAAAA 59.233 40.909 0.00 0.00 32.86 2.29
60 61 2.389715 TCCGGCAAAAAGGAAAGGAAA 58.610 42.857 0.00 0.00 32.86 3.13
61 62 2.074729 TCCGGCAAAAAGGAAAGGAA 57.925 45.000 0.00 0.00 32.86 3.36
62 63 1.960689 CTTCCGGCAAAAAGGAAAGGA 59.039 47.619 0.00 0.00 44.89 3.36
63 64 1.000843 CCTTCCGGCAAAAAGGAAAGG 59.999 52.381 13.23 6.14 44.89 3.11
64 65 1.960689 TCCTTCCGGCAAAAAGGAAAG 59.039 47.619 17.67 3.64 46.20 2.62
65 66 2.074729 TCCTTCCGGCAAAAAGGAAA 57.925 45.000 17.67 0.00 46.20 3.13
66 67 3.831651 TCCTTCCGGCAAAAAGGAA 57.168 47.368 17.67 4.36 46.20 3.36
68 69 1.270094 GGTTTCCTTCCGGCAAAAAGG 60.270 52.381 12.45 12.45 42.89 3.11
69 70 1.601914 CGGTTTCCTTCCGGCAAAAAG 60.602 52.381 0.00 0.00 43.68 2.27
70 71 0.386113 CGGTTTCCTTCCGGCAAAAA 59.614 50.000 0.00 0.00 43.68 1.94
71 72 2.034607 CGGTTTCCTTCCGGCAAAA 58.965 52.632 0.00 0.00 43.68 2.44
72 73 3.752704 CGGTTTCCTTCCGGCAAA 58.247 55.556 0.00 0.00 43.68 3.68
78 79 3.131577 ACCAAAAGAAACGGTTTCCTTCC 59.868 43.478 25.56 5.68 40.54 3.46
79 80 4.380841 ACCAAAAGAAACGGTTTCCTTC 57.619 40.909 25.56 6.13 40.54 3.46
80 81 4.811969 AACCAAAAGAAACGGTTTCCTT 57.188 36.364 25.56 18.31 40.08 3.36
113 114 4.353437 ACGTCGTCGGCTGAACCC 62.353 66.667 7.05 0.00 41.85 4.11
146 147 2.284112 CCTGGGGCCAAACATGCT 60.284 61.111 4.39 0.00 0.00 3.79
198 199 1.236616 CCATGCACTGCACCGAAGAA 61.237 55.000 5.67 0.00 43.04 2.52
241 272 1.625511 ACTCCTACGACGTCCCTTTT 58.374 50.000 10.58 0.00 0.00 2.27
246 277 1.294857 GTCCTACTCCTACGACGTCC 58.705 60.000 10.58 0.00 0.00 4.79
251 282 3.110705 ACTACTGGTCCTACTCCTACGA 58.889 50.000 0.00 0.00 0.00 3.43
252 283 3.557228 ACTACTGGTCCTACTCCTACG 57.443 52.381 0.00 0.00 0.00 3.51
312 343 2.884012 TGCCACAAGTACACATCAAAGG 59.116 45.455 0.00 0.00 0.00 3.11
356 387 5.716094 TCAACGAGTTAATACTAGCAGCAA 58.284 37.500 0.00 0.00 33.84 3.91
362 393 8.336806 CAGTAGTCCTCAACGAGTTAATACTAG 58.663 40.741 0.00 0.00 33.84 2.57
388 419 2.348666 CGTGACAGGCATGTAAACTAGC 59.651 50.000 2.88 0.00 40.68 3.42
389 420 2.930040 CCGTGACAGGCATGTAAACTAG 59.070 50.000 2.88 0.00 40.68 2.57
390 421 2.967362 CCGTGACAGGCATGTAAACTA 58.033 47.619 2.88 0.00 40.68 2.24
417 449 1.819632 GGTATTGTGCCCCTCTGCG 60.820 63.158 0.00 0.00 0.00 5.18
466 501 2.729360 TCACACGTTGCTGTCTTAATCG 59.271 45.455 0.00 0.00 0.00 3.34
467 502 3.987868 TCTCACACGTTGCTGTCTTAATC 59.012 43.478 0.00 0.00 0.00 1.75
468 503 3.990092 TCTCACACGTTGCTGTCTTAAT 58.010 40.909 0.00 0.00 0.00 1.40
469 504 3.446310 TCTCACACGTTGCTGTCTTAA 57.554 42.857 0.00 0.00 0.00 1.85
537 664 4.265073 AGCAAACCCATGACTAGATGTTC 58.735 43.478 0.00 0.00 0.00 3.18
564 691 8.480643 AAGATGATACTGTAACAGTTAAGTGC 57.519 34.615 10.30 0.00 42.59 4.40
569 1008 6.096423 AGCGGAAGATGATACTGTAACAGTTA 59.904 38.462 0.00 0.00 42.59 2.24
579 1018 3.300388 TCAGGAAGCGGAAGATGATACT 58.700 45.455 0.00 0.00 0.00 2.12
597 1036 1.364171 GGACCCGGTGATCGATCAG 59.636 63.158 27.95 18.11 42.43 2.90
626 1065 1.893786 GCAGGTGTCGAGTCAGGAT 59.106 57.895 0.00 0.00 0.00 3.24
657 1100 0.616395 TCCACTTCGCAGGTCCCATA 60.616 55.000 0.00 0.00 0.00 2.74
659 1102 2.525629 TCCACTTCGCAGGTCCCA 60.526 61.111 0.00 0.00 0.00 4.37
741 1184 2.565841 CCCAAACATTTCCCGCAAAAA 58.434 42.857 0.00 0.00 0.00 1.94
751 1194 3.843893 AAAAGCTGAGCCCAAACATTT 57.156 38.095 0.00 0.00 0.00 2.32
767 1210 6.911250 ACTGGACCCAAATTACCTAAAAAG 57.089 37.500 0.00 0.00 0.00 2.27
776 1221 4.844085 TCTCTCTCAACTGGACCCAAATTA 59.156 41.667 0.00 0.00 0.00 1.40
785 1230 2.271944 TGACGTCTCTCTCAACTGGA 57.728 50.000 17.92 0.00 0.00 3.86
786 1231 2.416566 CCATGACGTCTCTCTCAACTGG 60.417 54.545 17.92 5.85 0.00 4.00
812 1259 0.107654 GGACGGCTAGCAAACCTCAT 60.108 55.000 18.24 0.00 0.00 2.90
842 1289 2.062070 CCTGGTAGCTAGGCCCATC 58.938 63.158 0.00 0.00 0.00 3.51
1095 1548 0.250597 AACTACGTTGTGGGGCTTCC 60.251 55.000 2.75 0.00 0.00 3.46
1123 1582 6.082338 CCAACAAATCGATGAAGAAAGACAG 58.918 40.000 0.00 0.00 0.00 3.51
1148 1607 1.145119 AGGGTCAAGGGAAGTGGAAAC 59.855 52.381 0.00 0.00 0.00 2.78
1292 1755 6.908284 GCTACGAGTAATAAACAGAGAGAGTG 59.092 42.308 0.00 0.00 0.00 3.51
1293 1756 6.824704 AGCTACGAGTAATAAACAGAGAGAGT 59.175 38.462 0.00 0.00 0.00 3.24
1309 1772 1.341531 GCATCCATACCAGCTACGAGT 59.658 52.381 0.00 0.00 0.00 4.18
1310 1773 1.337260 GGCATCCATACCAGCTACGAG 60.337 57.143 0.00 0.00 0.00 4.18
1311 1774 0.679505 GGCATCCATACCAGCTACGA 59.320 55.000 0.00 0.00 0.00 3.43
1312 1775 0.681733 AGGCATCCATACCAGCTACG 59.318 55.000 0.00 0.00 0.00 3.51
1313 1776 1.694150 TGAGGCATCCATACCAGCTAC 59.306 52.381 0.00 0.00 0.00 3.58
1315 1778 0.763652 CTGAGGCATCCATACCAGCT 59.236 55.000 0.00 0.00 0.00 4.24
1316 1779 0.250640 CCTGAGGCATCCATACCAGC 60.251 60.000 0.00 0.00 0.00 4.85
1317 1780 0.399454 CCCTGAGGCATCCATACCAG 59.601 60.000 0.00 0.00 0.00 4.00
1343 1806 5.303971 AGTCAGTGAACTCAGAAAGATTGG 58.696 41.667 0.00 0.00 0.00 3.16
1369 1832 7.460910 ACTCAAATTCCCCAATTTAAATTGCT 58.539 30.769 28.17 11.79 43.38 3.91
1400 1897 2.102420 CGGCTCATCCCACATGTTACTA 59.898 50.000 0.00 0.00 0.00 1.82
1411 1908 1.139058 AGTATGTGTTCGGCTCATCCC 59.861 52.381 0.00 0.00 33.80 3.85
1459 1963 6.645790 AAATTTCATGCAGAGTTGAGAGTT 57.354 33.333 0.00 0.00 0.00 3.01
1460 1964 7.934855 ATAAATTTCATGCAGAGTTGAGAGT 57.065 32.000 0.00 0.00 0.00 3.24
1461 1965 7.701078 CCAATAAATTTCATGCAGAGTTGAGAG 59.299 37.037 0.00 0.00 0.00 3.20
1462 1966 7.394077 TCCAATAAATTTCATGCAGAGTTGAGA 59.606 33.333 0.00 0.00 0.00 3.27
1463 1967 7.541162 TCCAATAAATTTCATGCAGAGTTGAG 58.459 34.615 0.00 0.00 0.00 3.02
1464 1968 7.465353 TCCAATAAATTTCATGCAGAGTTGA 57.535 32.000 0.00 0.00 0.00 3.18
1465 1969 7.977293 TCATCCAATAAATTTCATGCAGAGTTG 59.023 33.333 0.00 0.00 0.00 3.16
1528 2045 1.372499 CGCTTGCTTGCACATGCTT 60.372 52.632 5.31 0.00 42.66 3.91
1535 2052 1.407258 AGGTAAAAACGCTTGCTTGCA 59.593 42.857 0.00 0.00 0.00 4.08
1550 2067 5.503002 GCCCAACTCCTGTAAATAAGGTAA 58.497 41.667 0.00 0.00 36.14 2.85
1557 2074 1.710809 AGTGGCCCAACTCCTGTAAAT 59.289 47.619 0.00 0.00 0.00 1.40
1574 2119 2.932614 CCTTTTGATCTCGGCACTAGTG 59.067 50.000 18.93 18.93 0.00 2.74
1575 2120 2.567615 ACCTTTTGATCTCGGCACTAGT 59.432 45.455 0.00 0.00 0.00 2.57
1601 2146 2.350057 TGCTCGAGCTATGGTCTAGT 57.650 50.000 35.27 0.00 42.66 2.57
1624 2169 6.564125 CGCCTTACTTATTTATGCTGCTGTAC 60.564 42.308 0.00 0.00 0.00 2.90
1632 2177 5.505159 GGGTGTTCGCCTTACTTATTTATGC 60.505 44.000 2.41 0.00 0.00 3.14
1633 2178 5.820947 AGGGTGTTCGCCTTACTTATTTATG 59.179 40.000 2.41 0.00 0.00 1.90
1634 2179 5.997843 AGGGTGTTCGCCTTACTTATTTAT 58.002 37.500 2.41 0.00 0.00 1.40
1639 2184 2.167075 GCTAGGGTGTTCGCCTTACTTA 59.833 50.000 2.41 0.00 0.00 2.24
1646 2191 0.102663 GAGTAGCTAGGGTGTTCGCC 59.897 60.000 0.00 0.00 0.00 5.54
1708 2253 6.208007 ACAAAATCAATGATGAAGCAGAGTGA 59.792 34.615 0.00 0.00 39.49 3.41
1781 2326 5.613360 CGACAATGTCTTCAAAGTAGCACAG 60.613 44.000 11.92 0.00 0.00 3.66
1813 2358 6.127168 ACTCGATTACACATACAAATGGGAGA 60.127 38.462 0.00 0.00 38.98 3.71
1817 2362 7.345192 GCTAACTCGATTACACATACAAATGG 58.655 38.462 0.00 0.00 37.43 3.16
1840 2385 6.150976 TGAAACATTTGAAACTATCCATCGCT 59.849 34.615 0.00 0.00 0.00 4.93
1846 2391 7.433680 AGGTGTTGAAACATTTGAAACTATCC 58.566 34.615 0.00 0.00 41.59 2.59
1902 2447 4.670896 AGCCAAAGCAACAACATTAGTT 57.329 36.364 0.00 0.00 43.56 2.24
1918 2463 2.916934 ACCAACCATCCTAGTTAGCCAA 59.083 45.455 0.00 0.00 0.00 4.52
1949 2494 9.343539 GGCTCAATTTCAAGTAAGGTAGAATAT 57.656 33.333 0.00 0.00 0.00 1.28
2009 2636 2.417787 GGAGGCAAAAGCAATGGATGAC 60.418 50.000 0.00 0.00 0.00 3.06
2010 2637 1.826720 GGAGGCAAAAGCAATGGATGA 59.173 47.619 0.00 0.00 0.00 2.92
2027 2654 0.617413 ACAGCAACCAGATGAGGGAG 59.383 55.000 0.00 0.00 37.02 4.30
2048 2675 4.317980 CGTTTGCAATTTGGTCATGACAAC 60.318 41.667 26.47 16.57 0.00 3.32
2053 2680 4.545610 AGTACGTTTGCAATTTGGTCATG 58.454 39.130 0.00 0.00 0.00 3.07
2054 2681 4.846779 AGTACGTTTGCAATTTGGTCAT 57.153 36.364 0.00 0.00 0.00 3.06
2057 2684 6.569179 AAGATAGTACGTTTGCAATTTGGT 57.431 33.333 0.00 0.00 0.00 3.67
2063 2690 6.366315 ACACAAAAGATAGTACGTTTGCAA 57.634 33.333 0.00 0.00 40.74 4.08
2071 2698 9.859692 GTACTTGAACAACACAAAAGATAGTAC 57.140 33.333 0.00 0.00 0.00 2.73
2084 2711 2.370849 GGGAGGGAGTACTTGAACAACA 59.629 50.000 0.00 0.00 0.00 3.33
2096 2723 5.400421 CCTTGTATTAGTAGAGGGAGGGAGT 60.400 48.000 0.00 0.00 0.00 3.85
2097 2724 5.081032 CCTTGTATTAGTAGAGGGAGGGAG 58.919 50.000 0.00 0.00 0.00 4.30
2098 2725 4.694751 GCCTTGTATTAGTAGAGGGAGGGA 60.695 50.000 0.00 0.00 0.00 4.20
2099 2726 3.579151 GCCTTGTATTAGTAGAGGGAGGG 59.421 52.174 0.00 0.00 0.00 4.30
2102 2729 3.965347 GTGGCCTTGTATTAGTAGAGGGA 59.035 47.826 3.32 0.00 0.00 4.20
2104 2731 5.128827 TGAAGTGGCCTTGTATTAGTAGAGG 59.871 44.000 3.32 0.00 0.00 3.69
2107 2734 9.561069 AAATATGAAGTGGCCTTGTATTAGTAG 57.439 33.333 3.32 0.00 0.00 2.57
2115 2742 9.200817 ACATATAAAAATATGAAGTGGCCTTGT 57.799 29.630 3.32 0.00 37.80 3.16
2116 2743 9.683069 GACATATAAAAATATGAAGTGGCCTTG 57.317 33.333 3.32 0.00 37.80 3.61
2117 2744 9.646522 AGACATATAAAAATATGAAGTGGCCTT 57.353 29.630 3.32 0.00 37.80 4.35
2118 2745 9.646522 AAGACATATAAAAATATGAAGTGGCCT 57.353 29.630 3.32 0.00 37.80 5.19
2146 2773 9.892130 TTGTTGGTAAAATAAATGGTCAAAGTT 57.108 25.926 0.00 0.00 0.00 2.66
2147 2774 9.892130 TTTGTTGGTAAAATAAATGGTCAAAGT 57.108 25.926 0.00 0.00 0.00 2.66
2151 2778 9.838339 ACATTTTGTTGGTAAAATAAATGGTCA 57.162 25.926 0.00 0.00 37.97 4.02
2185 2812 9.995003 TTCTTTCAAATGCACTTTTTATGGTAT 57.005 25.926 0.00 0.00 0.00 2.73
2186 2813 9.255304 GTTCTTTCAAATGCACTTTTTATGGTA 57.745 29.630 0.00 0.00 0.00 3.25
2187 2814 7.986889 AGTTCTTTCAAATGCACTTTTTATGGT 59.013 29.630 0.00 0.00 0.00 3.55
2188 2815 8.369218 AGTTCTTTCAAATGCACTTTTTATGG 57.631 30.769 0.00 0.00 0.00 2.74
2189 2816 9.853921 GAAGTTCTTTCAAATGCACTTTTTATG 57.146 29.630 0.00 0.00 35.78 1.90
2190 2817 9.822185 AGAAGTTCTTTCAAATGCACTTTTTAT 57.178 25.926 0.00 0.00 38.31 1.40
2191 2818 9.301153 GAGAAGTTCTTTCAAATGCACTTTTTA 57.699 29.630 6.88 0.00 38.31 1.52
2192 2819 7.009540 CGAGAAGTTCTTTCAAATGCACTTTTT 59.990 33.333 6.88 0.00 38.31 1.94
2193 2820 6.473455 CGAGAAGTTCTTTCAAATGCACTTTT 59.527 34.615 6.88 0.00 38.31 2.27
2194 2821 5.973565 CGAGAAGTTCTTTCAAATGCACTTT 59.026 36.000 6.88 0.00 38.31 2.66
2195 2822 5.296780 TCGAGAAGTTCTTTCAAATGCACTT 59.703 36.000 6.88 0.00 38.31 3.16
2196 2823 4.816385 TCGAGAAGTTCTTTCAAATGCACT 59.184 37.500 6.88 0.00 38.31 4.40
2197 2824 5.095691 TCGAGAAGTTCTTTCAAATGCAC 57.904 39.130 6.88 0.00 38.31 4.57
2198 2825 5.947228 ATCGAGAAGTTCTTTCAAATGCA 57.053 34.783 6.88 0.00 38.31 3.96
2265 2892 6.697892 ACTTTGTTTTTCGTGTCAAACTTTGA 59.302 30.769 0.00 0.00 34.52 2.69
2266 2893 6.785164 CACTTTGTTTTTCGTGTCAAACTTTG 59.215 34.615 0.00 0.00 34.52 2.77
2267 2894 6.074034 CCACTTTGTTTTTCGTGTCAAACTTT 60.074 34.615 0.00 0.00 34.52 2.66
2268 2895 5.404066 CCACTTTGTTTTTCGTGTCAAACTT 59.596 36.000 0.00 0.00 34.52 2.66
2269 2896 4.920927 CCACTTTGTTTTTCGTGTCAAACT 59.079 37.500 0.00 0.00 34.52 2.66
2270 2897 4.090786 CCCACTTTGTTTTTCGTGTCAAAC 59.909 41.667 0.00 0.00 34.09 2.93
2271 2898 4.238514 CCCACTTTGTTTTTCGTGTCAAA 58.761 39.130 0.00 0.00 0.00 2.69
2272 2899 3.839293 CCCACTTTGTTTTTCGTGTCAA 58.161 40.909 0.00 0.00 0.00 3.18
2273 2900 2.416162 GCCCACTTTGTTTTTCGTGTCA 60.416 45.455 0.00 0.00 0.00 3.58
2274 2901 2.159296 AGCCCACTTTGTTTTTCGTGTC 60.159 45.455 0.00 0.00 0.00 3.67
2275 2902 1.822371 AGCCCACTTTGTTTTTCGTGT 59.178 42.857 0.00 0.00 0.00 4.49
2276 2903 2.577449 AGCCCACTTTGTTTTTCGTG 57.423 45.000 0.00 0.00 0.00 4.35
2277 2904 2.232696 ACAAGCCCACTTTGTTTTTCGT 59.767 40.909 0.00 0.00 32.29 3.85
2278 2905 2.887337 ACAAGCCCACTTTGTTTTTCG 58.113 42.857 0.00 0.00 32.29 3.46
2279 2906 9.699703 TTTATATACAAGCCCACTTTGTTTTTC 57.300 29.630 0.00 0.00 32.29 2.29
2283 2910 9.651913 CATTTTTATATACAAGCCCACTTTGTT 57.348 29.630 0.00 0.00 32.29 2.83
2284 2911 9.030452 TCATTTTTATATACAAGCCCACTTTGT 57.970 29.630 0.00 0.00 32.29 2.83
2285 2912 9.868277 TTCATTTTTATATACAAGCCCACTTTG 57.132 29.630 0.00 0.00 32.29 2.77
2287 2914 8.695456 CCTTCATTTTTATATACAAGCCCACTT 58.305 33.333 0.00 0.00 36.19 3.16
2288 2915 7.287696 CCCTTCATTTTTATATACAAGCCCACT 59.712 37.037 0.00 0.00 0.00 4.00
2289 2916 7.433680 CCCTTCATTTTTATATACAAGCCCAC 58.566 38.462 0.00 0.00 0.00 4.61
2290 2917 6.041523 GCCCTTCATTTTTATATACAAGCCCA 59.958 38.462 0.00 0.00 0.00 5.36
2291 2918 6.455647 GCCCTTCATTTTTATATACAAGCCC 58.544 40.000 0.00 0.00 0.00 5.19
2292 2919 6.149633 CGCCCTTCATTTTTATATACAAGCC 58.850 40.000 0.00 0.00 0.00 4.35
2293 2920 6.735130 ACGCCCTTCATTTTTATATACAAGC 58.265 36.000 0.00 0.00 0.00 4.01
2296 2923 8.293867 GCATTACGCCCTTCATTTTTATATACA 58.706 33.333 0.00 0.00 32.94 2.29
2297 2924 7.480542 CGCATTACGCCCTTCATTTTTATATAC 59.519 37.037 0.00 0.00 37.30 1.47
2298 2925 7.388224 TCGCATTACGCCCTTCATTTTTATATA 59.612 33.333 0.00 0.00 43.23 0.86
2299 2926 6.205853 TCGCATTACGCCCTTCATTTTTATAT 59.794 34.615 0.00 0.00 43.23 0.86
2300 2927 5.527951 TCGCATTACGCCCTTCATTTTTATA 59.472 36.000 0.00 0.00 43.23 0.98
2301 2928 4.336993 TCGCATTACGCCCTTCATTTTTAT 59.663 37.500 0.00 0.00 43.23 1.40
2302 2929 3.690139 TCGCATTACGCCCTTCATTTTTA 59.310 39.130 0.00 0.00 43.23 1.52
2303 2930 2.490115 TCGCATTACGCCCTTCATTTTT 59.510 40.909 0.00 0.00 43.23 1.94
2304 2931 2.088423 TCGCATTACGCCCTTCATTTT 58.912 42.857 0.00 0.00 43.23 1.82
2305 2932 1.745232 TCGCATTACGCCCTTCATTT 58.255 45.000 0.00 0.00 43.23 2.32
2306 2933 1.400494 GTTCGCATTACGCCCTTCATT 59.600 47.619 0.00 0.00 43.23 2.57
2307 2934 1.014352 GTTCGCATTACGCCCTTCAT 58.986 50.000 0.00 0.00 43.23 2.57
2308 2935 0.036765 AGTTCGCATTACGCCCTTCA 60.037 50.000 0.00 0.00 43.23 3.02
2309 2936 0.373716 CAGTTCGCATTACGCCCTTC 59.626 55.000 0.00 0.00 43.23 3.46
2310 2937 1.644786 GCAGTTCGCATTACGCCCTT 61.645 55.000 0.00 0.00 43.23 3.95
2311 2938 2.106683 GCAGTTCGCATTACGCCCT 61.107 57.895 0.00 0.00 43.23 5.19
2312 2939 2.403586 GCAGTTCGCATTACGCCC 59.596 61.111 0.00 0.00 43.23 6.13
2321 2948 0.384353 GAAAGTTCGGTGCAGTTCGC 60.384 55.000 0.00 0.00 42.89 4.70
2322 2949 1.217882 AGAAAGTTCGGTGCAGTTCG 58.782 50.000 0.00 0.00 0.00 3.95
2323 2950 3.548214 GGAAAGAAAGTTCGGTGCAGTTC 60.548 47.826 0.00 0.00 0.00 3.01
2324 2951 2.357952 GGAAAGAAAGTTCGGTGCAGTT 59.642 45.455 0.00 0.00 0.00 3.16
2325 2952 1.947456 GGAAAGAAAGTTCGGTGCAGT 59.053 47.619 0.00 0.00 0.00 4.40
2326 2953 1.946768 TGGAAAGAAAGTTCGGTGCAG 59.053 47.619 0.00 0.00 0.00 4.41
2327 2954 2.045561 TGGAAAGAAAGTTCGGTGCA 57.954 45.000 0.00 0.00 0.00 4.57
2328 2955 2.351738 CCATGGAAAGAAAGTTCGGTGC 60.352 50.000 5.56 0.00 0.00 5.01
2329 2956 2.228822 CCCATGGAAAGAAAGTTCGGTG 59.771 50.000 15.22 0.00 0.00 4.94
2330 2957 2.107552 TCCCATGGAAAGAAAGTTCGGT 59.892 45.455 15.22 0.00 0.00 4.69
2331 2958 2.790433 TCCCATGGAAAGAAAGTTCGG 58.210 47.619 15.22 0.00 0.00 4.30
2332 2959 4.846779 TTTCCCATGGAAAGAAAGTTCG 57.153 40.909 15.22 0.00 45.42 3.95
2394 3022 2.354510 TCAGCGCCTATTATTGTTGCAC 59.645 45.455 2.29 0.00 0.00 4.57
2400 3028 3.246226 GTCAGTGTCAGCGCCTATTATTG 59.754 47.826 2.29 0.00 0.00 1.90
2410 3038 1.745653 TCTCTATGGTCAGTGTCAGCG 59.254 52.381 0.00 0.00 0.00 5.18
2449 3077 0.819582 CAAAATGTGGCCAGGGCTAG 59.180 55.000 5.11 0.00 41.60 3.42
2510 3138 0.478072 TGCTGTGGAATGAAGGGTGT 59.522 50.000 0.00 0.00 0.00 4.16
2520 3148 0.036732 GGTGACAGGATGCTGTGGAA 59.963 55.000 25.78 7.24 42.53 3.53
2523 3151 1.002888 AGAAGGTGACAGGATGCTGTG 59.997 52.381 25.78 0.00 42.53 3.66
2569 3197 8.926374 TCATCAATACTTGCATAATTCCCAAAT 58.074 29.630 0.00 0.00 0.00 2.32
2571 3199 7.201902 GGTCATCAATACTTGCATAATTCCCAA 60.202 37.037 0.00 0.00 0.00 4.12
2625 3254 6.672593 TGGTGAAAAGCTAGGGAATGAATAT 58.327 36.000 0.00 0.00 0.00 1.28
2648 3277 7.068593 GGATACTCTTCATCCTCAGGATCTATG 59.931 44.444 1.94 0.00 40.98 2.23
2664 3294 3.799420 CAGCAGCTTAACGGATACTCTTC 59.201 47.826 0.00 0.00 0.00 2.87
2674 3304 2.405892 AGCAAAACAGCAGCTTAACG 57.594 45.000 0.00 0.00 34.37 3.18
2676 3306 6.331369 AGATAAAGCAAAACAGCAGCTTAA 57.669 33.333 0.00 0.00 46.95 1.85
2769 3401 9.003658 CAGTGTGACCTCTGATTAGTTAAAAAT 57.996 33.333 0.00 0.00 34.78 1.82
2773 3405 5.011635 TGCAGTGTGACCTCTGATTAGTTAA 59.988 40.000 8.61 0.00 34.78 2.01
2774 3406 4.526650 TGCAGTGTGACCTCTGATTAGTTA 59.473 41.667 8.61 0.00 34.78 2.24
2775 3407 3.324846 TGCAGTGTGACCTCTGATTAGTT 59.675 43.478 8.61 0.00 34.78 2.24
2776 3408 2.899900 TGCAGTGTGACCTCTGATTAGT 59.100 45.455 8.61 0.00 34.78 2.24
2777 3409 3.056250 AGTGCAGTGTGACCTCTGATTAG 60.056 47.826 8.61 0.00 34.78 1.73
2778 3410 2.899900 AGTGCAGTGTGACCTCTGATTA 59.100 45.455 8.61 0.00 34.78 1.75
2779 3411 1.696336 AGTGCAGTGTGACCTCTGATT 59.304 47.619 8.61 0.00 34.78 2.57
2780 3412 1.001746 CAGTGCAGTGTGACCTCTGAT 59.998 52.381 13.67 0.00 34.78 2.90
2781 3413 0.390492 CAGTGCAGTGTGACCTCTGA 59.610 55.000 13.67 0.00 34.78 3.27
2782 3414 0.105593 ACAGTGCAGTGTGACCTCTG 59.894 55.000 26.11 9.87 35.71 3.35
2783 3415 1.615883 CTACAGTGCAGTGTGACCTCT 59.384 52.381 32.67 10.27 31.46 3.69
2784 3416 1.613925 TCTACAGTGCAGTGTGACCTC 59.386 52.381 32.67 0.00 31.46 3.85
2785 3417 1.704641 TCTACAGTGCAGTGTGACCT 58.295 50.000 32.67 11.68 31.46 3.85
2786 3418 2.738846 CAATCTACAGTGCAGTGTGACC 59.261 50.000 32.67 0.00 31.46 4.02
2793 3425 4.268644 CGTTATGGACAATCTACAGTGCAG 59.731 45.833 0.00 0.00 39.44 4.41
2874 3506 7.782897 AAATATCTGACGGATGAGGAAGATA 57.217 36.000 7.05 0.00 35.98 1.98
2883 3515 8.818141 TCTTAGCTTTAAATATCTGACGGATG 57.182 34.615 7.05 0.00 35.98 3.51
2993 3626 7.910162 CCATAGAAACATAATTTCGTCCACTTG 59.090 37.037 0.00 0.00 33.86 3.16
3040 3673 3.660865 TCAGAGAACTTTAACCGGAAGC 58.339 45.455 9.46 0.00 0.00 3.86
3057 3698 5.682234 TTCACTTTCAGGAGCATATCAGA 57.318 39.130 0.00 0.00 0.00 3.27
3113 3754 9.993454 CAATATCTATGGAACTCTTCAGATCAA 57.007 33.333 0.00 0.00 0.00 2.57
3114 3755 8.591940 CCAATATCTATGGAACTCTTCAGATCA 58.408 37.037 0.00 0.00 40.56 2.92
3115 3756 7.548780 GCCAATATCTATGGAACTCTTCAGATC 59.451 40.741 0.00 0.00 40.56 2.75
3116 3757 7.016957 TGCCAATATCTATGGAACTCTTCAGAT 59.983 37.037 0.00 0.00 40.56 2.90
3117 3758 6.327365 TGCCAATATCTATGGAACTCTTCAGA 59.673 38.462 0.00 0.00 40.56 3.27
3118 3759 6.426328 GTGCCAATATCTATGGAACTCTTCAG 59.574 42.308 0.00 0.00 42.42 3.02
3119 3760 6.291377 GTGCCAATATCTATGGAACTCTTCA 58.709 40.000 0.00 0.00 42.42 3.02
3120 3761 5.703130 GGTGCCAATATCTATGGAACTCTTC 59.297 44.000 3.80 0.00 44.71 2.87
3121 3762 5.456763 GGGTGCCAATATCTATGGAACTCTT 60.457 44.000 3.80 0.00 42.91 2.85
3122 3763 4.042187 GGGTGCCAATATCTATGGAACTCT 59.958 45.833 3.80 0.00 42.91 3.24
3123 3764 4.202461 TGGGTGCCAATATCTATGGAACTC 60.202 45.833 3.80 0.12 45.99 3.01
3124 3765 3.721575 TGGGTGCCAATATCTATGGAACT 59.278 43.478 3.80 0.00 44.71 3.01
3125 3766 4.098914 TGGGTGCCAATATCTATGGAAC 57.901 45.455 0.00 0.00 44.61 3.62
3126 3767 4.805140 TTGGGTGCCAATATCTATGGAA 57.195 40.909 0.00 0.00 38.75 3.53
3127 3768 4.805140 TTTGGGTGCCAATATCTATGGA 57.195 40.909 0.00 0.00 43.55 3.41
3128 3769 6.406177 GCATATTTGGGTGCCAATATCTATGG 60.406 42.308 0.00 0.00 43.55 2.74
3129 3770 6.567050 GCATATTTGGGTGCCAATATCTATG 58.433 40.000 0.00 0.00 43.55 2.23
3130 3771 5.357878 CGCATATTTGGGTGCCAATATCTAT 59.642 40.000 0.00 0.00 43.55 1.98
3131 3772 4.699735 CGCATATTTGGGTGCCAATATCTA 59.300 41.667 0.00 0.00 43.55 1.98
3132 3773 3.507233 CGCATATTTGGGTGCCAATATCT 59.493 43.478 0.00 0.00 43.55 1.98
3133 3774 3.836949 CGCATATTTGGGTGCCAATATC 58.163 45.455 0.00 0.00 43.55 1.63
3134 3775 2.029110 GCGCATATTTGGGTGCCAATAT 60.029 45.455 0.30 0.00 43.55 1.28
3135 3776 1.339610 GCGCATATTTGGGTGCCAATA 59.660 47.619 0.30 0.00 43.55 1.90
3136 3777 0.104671 GCGCATATTTGGGTGCCAAT 59.895 50.000 0.30 0.00 43.55 3.16
3137 3778 0.969917 AGCGCATATTTGGGTGCCAA 60.970 50.000 11.47 0.00 42.29 4.52
3138 3779 0.969917 AAGCGCATATTTGGGTGCCA 60.970 50.000 11.47 0.00 41.28 4.92
3166 3807 5.763204 GGAAACAGGTAAGACATGACAGAAA 59.237 40.000 0.00 0.00 33.56 2.52
3173 3814 3.758554 CCAAGGGAAACAGGTAAGACATG 59.241 47.826 0.00 0.00 35.77 3.21
3176 3817 3.782656 TCCAAGGGAAACAGGTAAGAC 57.217 47.619 0.00 0.00 0.00 3.01
3177 3818 4.105697 ACATTCCAAGGGAAACAGGTAAGA 59.894 41.667 1.25 0.00 45.41 2.10
3197 3841 4.103153 TCTCCTGGAAGAAACAGAACACAT 59.897 41.667 0.00 0.00 38.20 3.21
3224 3868 3.689347 TGCATATGCCAGGAATATGTCC 58.311 45.455 23.90 12.07 43.33 4.02
3225 3869 7.283807 TCATTATGCATATGCCAGGAATATGTC 59.716 37.037 23.90 17.54 39.29 3.06
3234 3878 5.353400 AGATTCGTCATTATGCATATGCCAG 59.647 40.000 24.54 9.92 41.18 4.85
3356 4005 2.795329 TCAGTTTTTGAGATGGCCCTC 58.205 47.619 0.00 0.00 0.00 4.30
3590 4247 2.858344 CCGATACCTTTCGTCATCACAC 59.142 50.000 0.00 0.00 37.42 3.82
3601 4258 6.426587 TCCTACTGTACTAACCGATACCTTT 58.573 40.000 0.00 0.00 0.00 3.11
3602 4259 6.006275 TCCTACTGTACTAACCGATACCTT 57.994 41.667 0.00 0.00 0.00 3.50
3603 4260 5.636903 TCCTACTGTACTAACCGATACCT 57.363 43.478 0.00 0.00 0.00 3.08
3609 4266 4.497006 CCATCGTTCCTACTGTACTAACCG 60.497 50.000 0.00 0.00 0.00 4.44
3663 4320 3.974871 TTTACCTTCCAACTTTGCGAC 57.025 42.857 0.00 0.00 0.00 5.19
3716 4373 2.878526 GCAAAACCCGTGGATAGGTTCT 60.879 50.000 0.00 0.00 45.68 3.01
3749 4406 2.601905 AGGGCAAAATTGAGCAGAGTT 58.398 42.857 0.00 0.00 0.00 3.01
3789 4446 0.036448 TGGTTAAACGGCATTCGGGA 59.964 50.000 0.00 0.00 44.45 5.14
3888 4553 8.738106 TGAATGCAAATGACATACACATAAAGA 58.262 29.630 0.00 0.00 0.00 2.52
4307 4977 7.839907 ACCTTTATGTGTATGTCATTGCATTT 58.160 30.769 0.00 0.00 0.00 2.32
4403 5074 8.792633 CCCTTTGACTGTTTGATCAATACTTTA 58.207 33.333 9.40 0.00 34.87 1.85
4413 5084 3.057315 CGAATGCCCTTTGACTGTTTGAT 60.057 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.