Multiple sequence alignment - TraesCS2B01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G232000 chr2B 100.000 4573 0 0 1 4573 229623393 229618821 0.000000e+00 8445.0
1 TraesCS2B01G232000 chr2B 98.529 68 1 0 1848 1915 229621479 229621412 2.230000e-23 121.0
2 TraesCS2B01G232000 chr2B 98.529 68 1 0 1915 1982 229621546 229621479 2.230000e-23 121.0
3 TraesCS2B01G232000 chr2B 92.647 68 4 1 3807 3873 229619521 229619454 3.770000e-16 97.1
4 TraesCS2B01G232000 chr2B 92.647 68 4 1 3873 3940 229619587 229619521 3.770000e-16 97.1
5 TraesCS2B01G232000 chr2B 87.234 47 6 0 123 169 178053860 178053906 2.000000e-03 54.7
6 TraesCS2B01G232000 chr2A 93.102 1957 96 12 2522 4448 181847268 181845321 0.000000e+00 2830.0
7 TraesCS2B01G232000 chr2A 90.453 1456 77 34 503 1915 181849370 181847934 0.000000e+00 1862.0
8 TraesCS2B01G232000 chr2A 92.952 227 12 4 1915 2139 181848002 181847778 1.230000e-85 327.0
9 TraesCS2B01G232000 chr2A 84.118 340 28 10 1 339 181854110 181853796 5.750000e-79 305.0
10 TraesCS2B01G232000 chr2A 92.000 75 6 0 1513 1587 108245336 108245410 6.260000e-19 106.0
11 TraesCS2B01G232000 chr2A 92.647 68 4 1 3873 3940 181845973 181845907 3.770000e-16 97.1
12 TraesCS2B01G232000 chr2A 92.982 57 2 2 3807 3863 181845907 181845853 1.050000e-11 82.4
13 TraesCS2B01G232000 chr2D 92.233 1648 83 20 2380 3999 168598370 168600000 0.000000e+00 2292.0
14 TraesCS2B01G232000 chr2D 93.575 1463 47 18 492 1915 168596612 168598066 0.000000e+00 2137.0
15 TraesCS2B01G232000 chr2D 92.354 497 29 3 12 500 168596085 168596580 0.000000e+00 699.0
16 TraesCS2B01G232000 chr2D 83.819 618 52 15 1189 1771 69260433 69259829 1.120000e-150 544.0
17 TraesCS2B01G232000 chr2D 88.114 387 34 5 1915 2299 168597998 168598374 2.510000e-122 449.0
18 TraesCS2B01G232000 chr2D 82.621 351 22 14 4016 4364 168601237 168601550 1.620000e-69 274.0
19 TraesCS2B01G232000 chr2D 94.872 78 3 1 2306 2383 120560022 120560098 2.230000e-23 121.0
20 TraesCS2B01G232000 chr2D 94.737 76 3 1 2307 2382 637442076 637442002 2.890000e-22 117.0
21 TraesCS2B01G232000 chr2D 92.647 68 4 1 3873 3940 168599809 168599875 3.770000e-16 97.1
22 TraesCS2B01G232000 chr4D 85.482 799 60 25 1145 1915 24257843 24257073 0.000000e+00 782.0
23 TraesCS2B01G232000 chr4D 92.683 82 6 0 2307 2388 12517440 12517359 8.040000e-23 119.0
24 TraesCS2B01G232000 chr7B 83.269 783 71 21 1189 1925 500215027 500215795 0.000000e+00 665.0
25 TraesCS2B01G232000 chr7B 84.000 75 9 2 2279 2352 196649624 196649696 8.210000e-08 69.4
26 TraesCS2B01G232000 chr5B 81.453 771 84 28 1189 1925 466536056 466536801 1.100000e-160 577.0
27 TraesCS2B01G232000 chr5B 89.796 343 26 7 1590 1925 233907247 233906907 9.090000e-117 431.0
28 TraesCS2B01G232000 chr5B 83.333 66 8 3 2284 2346 363557993 363558058 1.780000e-04 58.4
29 TraesCS2B01G232000 chr3D 82.885 520 51 19 1224 1706 261085446 261085964 2.530000e-117 433.0
30 TraesCS2B01G232000 chr3D 96.053 76 2 1 2306 2381 120008693 120008619 6.210000e-24 122.0
31 TraesCS2B01G232000 chr6D 79.137 278 31 8 1438 1694 199675669 199675398 2.830000e-37 167.0
32 TraesCS2B01G232000 chr6D 96.053 76 3 0 2307 2382 348107852 348107777 1.730000e-24 124.0
33 TraesCS2B01G232000 chr3B 86.897 145 16 3 1783 1925 790628226 790628369 4.740000e-35 159.0
34 TraesCS2B01G232000 chr7D 81.373 204 16 4 1513 1694 534755396 534755193 3.690000e-31 147.0
35 TraesCS2B01G232000 chr7D 92.222 90 6 1 2300 2389 45636198 45636110 4.800000e-25 126.0
36 TraesCS2B01G232000 chr7D 94.805 77 3 1 2306 2381 43122453 43122529 8.040000e-23 119.0
37 TraesCS2B01G232000 chr7D 77.311 119 26 1 80 197 580565352 580565470 8.210000e-08 69.4
38 TraesCS2B01G232000 chr6B 77.032 283 33 14 1437 1694 670296578 670296853 2.870000e-27 134.0
39 TraesCS2B01G232000 chr6B 90.099 101 7 2 1597 1694 38774877 38774977 1.340000e-25 128.0
40 TraesCS2B01G232000 chr7A 96.053 76 3 0 2307 2382 206709771 206709846 1.730000e-24 124.0
41 TraesCS2B01G232000 chr5D 93.671 79 5 0 2307 2385 418874060 418873982 8.040000e-23 119.0
42 TraesCS2B01G232000 chr1D 83.333 126 21 0 1292 1417 439022344 439022469 2.890000e-22 117.0
43 TraesCS2B01G232000 chr1B 82.400 125 22 0 1286 1410 595176950 595177074 4.840000e-20 110.0
44 TraesCS2B01G232000 chr1B 86.957 69 7 2 2285 2352 533814658 533814591 4.910000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G232000 chr2B 229618821 229623393 4572 True 1776.24 8445 96.470400 1 4573 5 chr2B.!!$R1 4572
1 TraesCS2B01G232000 chr2A 181845321 181849370 4049 True 1039.70 2830 92.427200 503 4448 5 chr2A.!!$R2 3945
2 TraesCS2B01G232000 chr2D 168596085 168601550 5465 False 991.35 2292 90.257333 12 4364 6 chr2D.!!$F2 4352
3 TraesCS2B01G232000 chr2D 69259829 69260433 604 True 544.00 544 83.819000 1189 1771 1 chr2D.!!$R1 582
4 TraesCS2B01G232000 chr4D 24257073 24257843 770 True 782.00 782 85.482000 1145 1915 1 chr4D.!!$R2 770
5 TraesCS2B01G232000 chr7B 500215027 500215795 768 False 665.00 665 83.269000 1189 1925 1 chr7B.!!$F2 736
6 TraesCS2B01G232000 chr5B 466536056 466536801 745 False 577.00 577 81.453000 1189 1925 1 chr5B.!!$F2 736
7 TraesCS2B01G232000 chr3D 261085446 261085964 518 False 433.00 433 82.885000 1224 1706 1 chr3D.!!$F1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.517316 GACGAAACACATGCTCCCAC 59.483 55.0 0.0 0.0 0.0 4.61 F
1492 1577 0.163788 GATTATTCATGCCGCCGTCG 59.836 55.0 0.0 0.0 0.0 5.12 F
2383 2699 0.115745 TTGGAACGGAGGGAGTAGGT 59.884 55.0 0.0 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2093 0.446222 TATGCTGCCGCGTTTTTCTC 59.554 50.0 4.92 0.0 39.65 2.87 R
3398 3773 0.099968 CGGCATCCATCAGTTTGCAG 59.900 55.0 0.00 0.0 36.82 4.41 R
4255 5878 0.038892 GTTGTCCAGCTTGCCACATG 60.039 55.0 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.626743 ACTTACTCTTAGGCACACACGT 59.373 45.455 0.00 0.00 0.00 4.49
83 84 3.006537 ACTCTTAGGCACACACGTACATT 59.993 43.478 0.00 0.00 0.00 2.71
95 96 7.222031 GCACACACGTACATTCTATCTTTATGA 59.778 37.037 0.00 0.00 0.00 2.15
102 103 7.060059 CGTACATTCTATCTTTATGAGCGTCTG 59.940 40.741 0.00 0.00 0.00 3.51
104 105 7.941919 ACATTCTATCTTTATGAGCGTCTGTA 58.058 34.615 0.00 0.00 0.00 2.74
127 128 7.919091 TGTAAGATACTGAACCGACATAACATC 59.081 37.037 0.00 0.00 0.00 3.06
167 168 9.084164 AGTCATCATAAATACGTTGTAGTTGAC 57.916 33.333 0.00 1.38 0.00 3.18
184 185 0.517316 GACGAAACACATGCTCCCAC 59.483 55.000 0.00 0.00 0.00 4.61
197 198 1.067142 GCTCCCACTACACGAACATCA 60.067 52.381 0.00 0.00 0.00 3.07
227 228 2.969443 ACAAGCATGCGTGTTAAGTC 57.031 45.000 29.96 0.00 35.24 3.01
248 249 5.362430 AGTCAAAAACTTAAACCCTGATGCA 59.638 36.000 0.00 0.00 33.03 3.96
280 281 6.208644 CACCACAAGAAAACCTAAACATCTG 58.791 40.000 0.00 0.00 0.00 2.90
282 283 6.777580 ACCACAAGAAAACCTAAACATCTGAT 59.222 34.615 0.00 0.00 0.00 2.90
287 288 9.219603 CAAGAAAACCTAAACATCTGATGAGTA 57.780 33.333 23.59 13.09 0.00 2.59
288 289 8.779354 AGAAAACCTAAACATCTGATGAGTAC 57.221 34.615 23.59 8.15 0.00 2.73
292 293 2.209838 AACATCTGATGAGTACCGCG 57.790 50.000 23.59 0.00 0.00 6.46
361 362 7.266400 ACTCTTTCCAATCTTACCGAATAGAC 58.734 38.462 0.00 0.00 0.00 2.59
396 397 6.565999 GCATGCGTGTTCTAGAAAAAGTAACT 60.566 38.462 6.78 0.00 0.00 2.24
500 508 2.354401 CCTTCCGCTGCTCCTCAGA 61.354 63.158 0.00 0.00 45.72 3.27
501 509 1.153667 CTTCCGCTGCTCCTCAGAC 60.154 63.158 0.00 0.00 45.72 3.51
511 559 2.111384 GCTCCTCAGACCATCAACCTA 58.889 52.381 0.00 0.00 0.00 3.08
522 570 3.134081 ACCATCAACCTAAATCGACCGAT 59.866 43.478 0.00 0.00 36.23 4.18
535 583 0.530650 GACCGATCATCCGCACACAT 60.531 55.000 0.00 0.00 0.00 3.21
633 686 6.664428 AGAGAGGTAAAATATCTCCTGCTC 57.336 41.667 0.00 0.00 40.29 4.26
935 988 1.137479 CCGGACCGAAGCCTATAAACA 59.863 52.381 17.49 0.00 0.00 2.83
1026 1079 4.947147 ACGCACACCGGCACCAAT 62.947 61.111 0.00 0.00 42.52 3.16
1029 1082 1.969064 GCACACCGGCACCAATACA 60.969 57.895 0.00 0.00 0.00 2.29
1140 1202 4.799824 GGCCACTACGCCGCGTTA 62.800 66.667 25.47 9.14 41.54 3.18
1492 1577 0.163788 GATTATTCATGCCGCCGTCG 59.836 55.000 0.00 0.00 0.00 5.12
1493 1578 1.841663 ATTATTCATGCCGCCGTCGC 61.842 55.000 0.00 0.00 0.00 5.19
1494 1579 2.916502 TTATTCATGCCGCCGTCGCT 62.917 55.000 0.00 0.00 0.00 4.93
1501 1586 2.029073 CCGCCGTCGCTGGATTAT 59.971 61.111 0.00 0.00 32.47 1.28
1502 1587 2.022129 CCGCCGTCGCTGGATTATC 61.022 63.158 0.00 0.00 32.47 1.75
1503 1588 2.022129 CGCCGTCGCTGGATTATCC 61.022 63.158 3.91 3.91 36.96 2.59
1534 1644 4.063689 CACTCTGTTTCAGATGCTCTGTT 58.936 43.478 11.37 0.00 44.58 3.16
1575 1686 0.972134 TTCTGCTGCTGTACTCTGCT 59.028 50.000 0.00 0.00 38.91 4.24
1587 1698 1.451067 ACTCTGCTCAAATCTGCTGC 58.549 50.000 0.00 0.00 0.00 5.25
1696 1833 5.543507 TTGTGGTCTGTAATGCCAATTTT 57.456 34.783 0.00 0.00 33.66 1.82
1878 2015 4.207165 GCCCATACTGCAAATTCCTTCTA 58.793 43.478 0.00 0.00 0.00 2.10
1883 2020 6.547141 CCATACTGCAAATTCCTTCTATCCAA 59.453 38.462 0.00 0.00 0.00 3.53
1884 2021 7.232127 CCATACTGCAAATTCCTTCTATCCAAT 59.768 37.037 0.00 0.00 0.00 3.16
1885 2022 9.288576 CATACTGCAAATTCCTTCTATCCAATA 57.711 33.333 0.00 0.00 0.00 1.90
1886 2023 7.814264 ACTGCAAATTCCTTCTATCCAATAG 57.186 36.000 0.00 0.00 0.00 1.73
1887 2024 7.577303 ACTGCAAATTCCTTCTATCCAATAGA 58.423 34.615 0.00 0.00 39.98 1.98
1888 2025 7.718753 ACTGCAAATTCCTTCTATCCAATAGAG 59.281 37.037 0.00 0.00 42.40 2.43
1889 2026 7.805163 TGCAAATTCCTTCTATCCAATAGAGA 58.195 34.615 0.00 0.00 42.40 3.10
1890 2027 8.274322 TGCAAATTCCTTCTATCCAATAGAGAA 58.726 33.333 0.00 0.62 42.40 2.87
1891 2028 9.125026 GCAAATTCCTTCTATCCAATAGAGAAA 57.875 33.333 0.00 0.00 42.40 2.52
1910 2047 2.362169 AAAAACGCGGCAGCATATTT 57.638 40.000 12.47 3.33 45.49 1.40
1911 2048 2.362169 AAAACGCGGCAGCATATTTT 57.638 40.000 12.47 9.32 45.49 1.82
1912 2049 1.627879 AAACGCGGCAGCATATTTTG 58.372 45.000 12.47 0.00 45.49 2.44
1913 2050 0.525761 AACGCGGCAGCATATTTTGT 59.474 45.000 12.47 0.00 45.49 2.83
1914 2051 0.525761 ACGCGGCAGCATATTTTGTT 59.474 45.000 12.47 0.00 45.49 2.83
1915 2052 1.191096 CGCGGCAGCATATTTTGTTC 58.809 50.000 10.08 0.00 45.49 3.18
1916 2053 1.202177 CGCGGCAGCATATTTTGTTCT 60.202 47.619 10.08 0.00 45.49 3.01
1917 2054 2.187707 GCGGCAGCATATTTTGTTCTG 58.812 47.619 3.18 0.00 44.35 3.02
1918 2055 2.415893 GCGGCAGCATATTTTGTTCTGT 60.416 45.455 3.18 0.00 44.35 3.41
1919 2056 3.181501 GCGGCAGCATATTTTGTTCTGTA 60.182 43.478 3.18 0.00 44.35 2.74
1920 2057 4.498009 GCGGCAGCATATTTTGTTCTGTAT 60.498 41.667 3.18 0.00 44.35 2.29
1921 2058 5.581605 CGGCAGCATATTTTGTTCTGTATT 58.418 37.500 0.00 0.00 0.00 1.89
1922 2059 6.035843 CGGCAGCATATTTTGTTCTGTATTT 58.964 36.000 0.00 0.00 0.00 1.40
1923 2060 6.020440 CGGCAGCATATTTTGTTCTGTATTTG 60.020 38.462 0.00 0.00 0.00 2.32
1924 2061 6.237915 GGCAGCATATTTTGTTCTGTATTTGC 60.238 38.462 0.00 0.00 0.00 3.68
1925 2062 6.237915 GCAGCATATTTTGTTCTGTATTTGCC 60.238 38.462 0.00 0.00 0.00 4.52
1926 2063 6.256321 CAGCATATTTTGTTCTGTATTTGCCC 59.744 38.462 0.00 0.00 0.00 5.36
1927 2064 6.070881 AGCATATTTTGTTCTGTATTTGCCCA 60.071 34.615 0.00 0.00 0.00 5.36
1928 2065 6.762661 GCATATTTTGTTCTGTATTTGCCCAT 59.237 34.615 0.00 0.00 0.00 4.00
1929 2066 7.925483 GCATATTTTGTTCTGTATTTGCCCATA 59.075 33.333 0.00 0.00 0.00 2.74
1930 2067 9.248291 CATATTTTGTTCTGTATTTGCCCATAC 57.752 33.333 0.00 0.00 0.00 2.39
1931 2068 6.909550 TTTTGTTCTGTATTTGCCCATACT 57.090 33.333 4.50 0.00 31.73 2.12
1932 2069 5.895636 TTGTTCTGTATTTGCCCATACTG 57.104 39.130 4.50 4.22 31.73 2.74
1933 2070 3.694072 TGTTCTGTATTTGCCCATACTGC 59.306 43.478 4.50 0.00 31.73 4.40
1934 2071 3.643199 TCTGTATTTGCCCATACTGCA 57.357 42.857 4.50 0.00 36.84 4.41
1935 2072 3.961849 TCTGTATTTGCCCATACTGCAA 58.038 40.909 0.00 0.00 46.30 4.08
1941 2078 2.530460 TGCCCATACTGCAAATTCCT 57.470 45.000 0.00 0.00 35.40 3.36
1942 2079 2.818921 TGCCCATACTGCAAATTCCTT 58.181 42.857 0.00 0.00 35.40 3.36
1943 2080 2.760092 TGCCCATACTGCAAATTCCTTC 59.240 45.455 0.00 0.00 35.40 3.46
1944 2081 3.026694 GCCCATACTGCAAATTCCTTCT 58.973 45.455 0.00 0.00 0.00 2.85
1945 2082 4.207165 GCCCATACTGCAAATTCCTTCTA 58.793 43.478 0.00 0.00 0.00 2.10
1946 2083 4.829492 GCCCATACTGCAAATTCCTTCTAT 59.171 41.667 0.00 0.00 0.00 1.98
1947 2084 5.048434 GCCCATACTGCAAATTCCTTCTATC 60.048 44.000 0.00 0.00 0.00 2.08
1948 2085 5.474876 CCCATACTGCAAATTCCTTCTATCC 59.525 44.000 0.00 0.00 0.00 2.59
1955 2093 7.718753 ACTGCAAATTCCTTCTATCCAATAGAG 59.281 37.037 0.00 0.00 42.40 2.43
1957 2095 7.935755 TGCAAATTCCTTCTATCCAATAGAGAG 59.064 37.037 0.00 0.00 42.40 3.20
2028 2166 3.668447 TGCATTCTTCTCAACTCCTCAC 58.332 45.455 0.00 0.00 0.00 3.51
2063 2201 2.598394 TTTGGCCTGGTGCAGCTC 60.598 61.111 18.08 6.17 43.89 4.09
2067 2205 2.664081 GGCCTGGTGCAGCTCTACT 61.664 63.158 18.08 0.00 43.89 2.57
2072 2210 0.610174 TGGTGCAGCTCTACTCCTTG 59.390 55.000 18.08 0.00 0.00 3.61
2083 2221 7.042389 GCAGCTCTACTCCTTGTAATTTATCAC 60.042 40.741 0.00 0.00 0.00 3.06
2106 2244 9.060347 TCACTTCTTCATATTGCCATATTTCTC 57.940 33.333 0.00 0.00 0.00 2.87
2136 2452 5.352643 AGCACCGTGTATTTCAAAACTAC 57.647 39.130 0.00 0.00 0.00 2.73
2138 2454 5.049680 AGCACCGTGTATTTCAAAACTACAG 60.050 40.000 0.00 0.00 0.00 2.74
2177 2493 9.899226 ATCTACTGCAGATTTTGTTTTAAGTTC 57.101 29.630 23.35 0.00 41.49 3.01
2206 2522 1.320507 TTTTTCTGGCGGGTAACACC 58.679 50.000 0.00 0.00 37.60 4.16
2226 2542 2.943033 CCGTTCAGTTTTCTTCCTGTGT 59.057 45.455 0.00 0.00 0.00 3.72
2227 2543 3.377172 CCGTTCAGTTTTCTTCCTGTGTT 59.623 43.478 0.00 0.00 0.00 3.32
2228 2544 4.342772 CGTTCAGTTTTCTTCCTGTGTTG 58.657 43.478 0.00 0.00 0.00 3.33
2230 2546 5.064198 CGTTCAGTTTTCTTCCTGTGTTGTA 59.936 40.000 0.00 0.00 0.00 2.41
2231 2547 6.255950 GTTCAGTTTTCTTCCTGTGTTGTAC 58.744 40.000 0.00 0.00 0.00 2.90
2232 2548 5.492895 TCAGTTTTCTTCCTGTGTTGTACA 58.507 37.500 0.00 0.00 37.78 2.90
2233 2549 5.941058 TCAGTTTTCTTCCTGTGTTGTACAA 59.059 36.000 3.59 3.59 39.20 2.41
2234 2550 6.093495 TCAGTTTTCTTCCTGTGTTGTACAAG 59.907 38.462 8.98 0.00 39.20 3.16
2235 2551 5.357032 AGTTTTCTTCCTGTGTTGTACAAGG 59.643 40.000 8.98 6.77 39.20 3.61
2236 2552 4.764050 TTCTTCCTGTGTTGTACAAGGA 57.236 40.909 8.98 9.30 39.20 3.36
2240 2556 2.039746 TCCTGTGTTGTACAAGGATGGG 59.960 50.000 8.98 8.17 39.20 4.00
2242 2558 3.497763 CCTGTGTTGTACAAGGATGGGAA 60.498 47.826 8.98 0.00 39.20 3.97
2256 2572 1.682344 GGGAAGGGGGTGATGTTGC 60.682 63.158 0.00 0.00 0.00 4.17
2294 2610 6.801539 TTGGCTCAGTATTTGTTCAGTTAG 57.198 37.500 0.00 0.00 0.00 2.34
2299 2615 6.651225 GCTCAGTATTTGTTCAGTTAGAGGTT 59.349 38.462 0.00 0.00 0.00 3.50
2300 2616 7.148557 GCTCAGTATTTGTTCAGTTAGAGGTTC 60.149 40.741 0.00 0.00 0.00 3.62
2301 2617 7.732025 TCAGTATTTGTTCAGTTAGAGGTTCA 58.268 34.615 0.00 0.00 0.00 3.18
2302 2618 7.872993 TCAGTATTTGTTCAGTTAGAGGTTCAG 59.127 37.037 0.00 0.00 0.00 3.02
2303 2619 7.657761 CAGTATTTGTTCAGTTAGAGGTTCAGT 59.342 37.037 0.00 0.00 0.00 3.41
2304 2620 8.211629 AGTATTTGTTCAGTTAGAGGTTCAGTT 58.788 33.333 0.00 0.00 0.00 3.16
2305 2621 9.485206 GTATTTGTTCAGTTAGAGGTTCAGTTA 57.515 33.333 0.00 0.00 0.00 2.24
2308 2624 9.485206 TTTGTTCAGTTAGAGGTTCAGTTATAC 57.515 33.333 0.00 0.00 0.00 1.47
2309 2625 8.418597 TGTTCAGTTAGAGGTTCAGTTATACT 57.581 34.615 0.00 0.00 0.00 2.12
2310 2626 8.521176 TGTTCAGTTAGAGGTTCAGTTATACTC 58.479 37.037 0.00 0.00 0.00 2.59
2311 2627 7.642082 TCAGTTAGAGGTTCAGTTATACTCC 57.358 40.000 0.00 0.00 0.00 3.85
2312 2628 6.606395 TCAGTTAGAGGTTCAGTTATACTCCC 59.394 42.308 0.00 0.00 0.00 4.30
2313 2629 6.608002 CAGTTAGAGGTTCAGTTATACTCCCT 59.392 42.308 0.00 0.00 0.00 4.20
2314 2630 6.834969 AGTTAGAGGTTCAGTTATACTCCCTC 59.165 42.308 0.00 0.00 36.02 4.30
2315 2631 4.548669 AGAGGTTCAGTTATACTCCCTCC 58.451 47.826 0.00 0.00 36.24 4.30
2316 2632 3.297736 AGGTTCAGTTATACTCCCTCCG 58.702 50.000 0.00 0.00 0.00 4.63
2317 2633 3.029570 GGTTCAGTTATACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
2318 2634 3.450096 GGTTCAGTTATACTCCCTCCGTT 59.550 47.826 0.00 0.00 0.00 4.44
2319 2635 4.441217 GGTTCAGTTATACTCCCTCCGTTC 60.441 50.000 0.00 0.00 0.00 3.95
2320 2636 3.294214 TCAGTTATACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2321 2637 3.028850 CAGTTATACTCCCTCCGTTCCA 58.971 50.000 0.00 0.00 0.00 3.53
2322 2638 3.449737 CAGTTATACTCCCTCCGTTCCAA 59.550 47.826 0.00 0.00 0.00 3.53
2323 2639 4.081309 CAGTTATACTCCCTCCGTTCCAAA 60.081 45.833 0.00 0.00 0.00 3.28
2324 2640 4.533311 AGTTATACTCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
2325 2641 5.191124 AGTTATACTCCCTCCGTTCCAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
2326 2642 6.384886 AGTTATACTCCCTCCGTTCCAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
2327 2643 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2328 2644 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2329 2645 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2330 2646 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2331 2647 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2332 2648 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2333 2649 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2334 2650 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2335 2651 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2336 2652 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2337 2653 4.644685 CCGTTCCAAAATAGATGACCCAAT 59.355 41.667 0.00 0.00 0.00 3.16
2338 2654 5.127031 CCGTTCCAAAATAGATGACCCAATT 59.873 40.000 0.00 0.00 0.00 2.32
2339 2655 6.350949 CCGTTCCAAAATAGATGACCCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
2340 2656 7.096551 CGTTCCAAAATAGATGACCCAATTTT 58.903 34.615 0.00 0.00 33.07 1.82
2341 2657 7.063308 CGTTCCAAAATAGATGACCCAATTTTG 59.937 37.037 10.80 10.80 43.77 2.44
2342 2658 7.552050 TCCAAAATAGATGACCCAATTTTGT 57.448 32.000 14.67 0.00 43.14 2.83
2343 2659 8.657387 TCCAAAATAGATGACCCAATTTTGTA 57.343 30.769 14.67 1.18 43.14 2.41
2344 2660 8.527810 TCCAAAATAGATGACCCAATTTTGTAC 58.472 33.333 14.67 0.00 43.14 2.90
2345 2661 8.531146 CCAAAATAGATGACCCAATTTTGTACT 58.469 33.333 14.67 0.00 43.14 2.73
2346 2662 9.573133 CAAAATAGATGACCCAATTTTGTACTC 57.427 33.333 9.93 0.00 41.26 2.59
2347 2663 8.877864 AAATAGATGACCCAATTTTGTACTCA 57.122 30.769 0.00 0.00 0.00 3.41
2348 2664 7.865706 ATAGATGACCCAATTTTGTACTCAC 57.134 36.000 0.00 0.00 0.00 3.51
2349 2665 5.880901 AGATGACCCAATTTTGTACTCACT 58.119 37.500 0.00 0.00 0.00 3.41
2350 2666 6.306987 AGATGACCCAATTTTGTACTCACTT 58.693 36.000 0.00 0.00 0.00 3.16
2351 2667 6.777580 AGATGACCCAATTTTGTACTCACTTT 59.222 34.615 0.00 0.00 0.00 2.66
2352 2668 6.142818 TGACCCAATTTTGTACTCACTTTG 57.857 37.500 0.00 0.00 0.00 2.77
2353 2669 5.068460 TGACCCAATTTTGTACTCACTTTGG 59.932 40.000 0.00 1.78 33.54 3.28
2354 2670 4.881920 CCCAATTTTGTACTCACTTTGGG 58.118 43.478 15.11 15.11 44.09 4.12
2355 2671 4.343814 CCCAATTTTGTACTCACTTTGGGT 59.656 41.667 18.29 0.00 44.35 4.51
2356 2672 5.508994 CCCAATTTTGTACTCACTTTGGGTC 60.509 44.000 18.29 0.00 44.35 4.46
2357 2673 5.068460 CCAATTTTGTACTCACTTTGGGTCA 59.932 40.000 0.00 0.00 30.82 4.02
2358 2674 6.239289 CCAATTTTGTACTCACTTTGGGTCAT 60.239 38.462 0.00 0.00 30.82 3.06
2359 2675 6.575162 ATTTTGTACTCACTTTGGGTCATC 57.425 37.500 0.00 0.00 30.82 2.92
2360 2676 4.974645 TTGTACTCACTTTGGGTCATCT 57.025 40.909 0.00 0.00 30.82 2.90
2361 2677 6.428083 TTTGTACTCACTTTGGGTCATCTA 57.572 37.500 0.00 0.00 30.82 1.98
2362 2678 6.620877 TTGTACTCACTTTGGGTCATCTAT 57.379 37.500 0.00 0.00 30.82 1.98
2363 2679 6.620877 TGTACTCACTTTGGGTCATCTATT 57.379 37.500 0.00 0.00 30.82 1.73
2364 2680 7.016153 TGTACTCACTTTGGGTCATCTATTT 57.984 36.000 0.00 0.00 30.82 1.40
2365 2681 7.458397 TGTACTCACTTTGGGTCATCTATTTT 58.542 34.615 0.00 0.00 30.82 1.82
2366 2682 6.824305 ACTCACTTTGGGTCATCTATTTTG 57.176 37.500 0.00 0.00 0.00 2.44
2367 2683 5.711976 ACTCACTTTGGGTCATCTATTTTGG 59.288 40.000 0.00 0.00 0.00 3.28
2368 2684 5.886609 TCACTTTGGGTCATCTATTTTGGA 58.113 37.500 0.00 0.00 0.00 3.53
2369 2685 6.310941 TCACTTTGGGTCATCTATTTTGGAA 58.689 36.000 0.00 0.00 0.00 3.53
2370 2686 6.208599 TCACTTTGGGTCATCTATTTTGGAAC 59.791 38.462 0.00 0.00 0.00 3.62
2371 2687 5.183140 ACTTTGGGTCATCTATTTTGGAACG 59.817 40.000 0.00 0.00 0.00 3.95
2372 2688 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2373 2689 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2374 2690 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2375 2691 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2376 2692 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2377 2693 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2378 2694 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2379 2695 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2380 2696 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2381 2697 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2382 2698 1.272807 TTTGGAACGGAGGGAGTAGG 58.727 55.000 0.00 0.00 0.00 3.18
2383 2699 0.115745 TTGGAACGGAGGGAGTAGGT 59.884 55.000 0.00 0.00 0.00 3.08
2384 2700 0.613853 TGGAACGGAGGGAGTAGGTG 60.614 60.000 0.00 0.00 0.00 4.00
2385 2701 1.328430 GGAACGGAGGGAGTAGGTGG 61.328 65.000 0.00 0.00 0.00 4.61
2386 2702 1.957765 GAACGGAGGGAGTAGGTGGC 61.958 65.000 0.00 0.00 0.00 5.01
2387 2703 2.363795 CGGAGGGAGTAGGTGGCA 60.364 66.667 0.00 0.00 0.00 4.92
2388 2704 1.987855 CGGAGGGAGTAGGTGGCAA 60.988 63.158 0.00 0.00 0.00 4.52
2389 2705 1.602771 GGAGGGAGTAGGTGGCAAC 59.397 63.158 0.00 0.00 0.00 4.17
2390 2706 0.910088 GGAGGGAGTAGGTGGCAACT 60.910 60.000 11.18 11.18 37.61 3.16
2450 2808 9.554395 TGACACTAAAAATATCACTGAACTTGA 57.446 29.630 0.00 0.00 0.00 3.02
2503 2878 7.771361 TGTTGTATTCAGTTTCACCTTCTTGTA 59.229 33.333 0.00 0.00 0.00 2.41
2512 2887 4.974645 TCACCTTCTTGTACTGGTCATT 57.025 40.909 0.00 0.00 0.00 2.57
2513 2888 4.894784 TCACCTTCTTGTACTGGTCATTC 58.105 43.478 0.00 0.00 0.00 2.67
2514 2889 4.346709 TCACCTTCTTGTACTGGTCATTCA 59.653 41.667 0.00 0.00 0.00 2.57
2515 2890 4.692625 CACCTTCTTGTACTGGTCATTCAG 59.307 45.833 0.00 0.00 40.40 3.02
2517 2892 4.692625 CCTTCTTGTACTGGTCATTCAGTG 59.307 45.833 7.65 0.00 46.29 3.66
2518 2893 5.511373 CCTTCTTGTACTGGTCATTCAGTGA 60.511 44.000 7.65 0.00 46.29 3.41
2534 2909 7.502226 TCATTCAGTGACCTCATTGTTAGTTTT 59.498 33.333 0.00 0.00 35.43 2.43
2580 2955 3.244044 GGGTTTTTGCAAGGTTCATGCTA 60.244 43.478 0.00 0.00 44.14 3.49
2680 3055 2.050077 GACGCAACAAAGCAGCCC 60.050 61.111 0.00 0.00 0.00 5.19
2725 3100 7.397892 TCAGGAAGATACAGTCTAGTTCTTG 57.602 40.000 0.00 0.00 35.67 3.02
2781 3156 1.880675 TGAGAAGAGAGAAGAACGCGT 59.119 47.619 5.58 5.58 0.00 6.01
2873 3248 2.835431 CTGGAGACCGCGGAGGAT 60.835 66.667 35.90 9.58 45.00 3.24
2936 3311 1.302949 CCCGGATTTCCTGAGGCAA 59.697 57.895 0.73 0.00 0.00 4.52
2953 3328 1.171308 CAACTCAAGATGCACAGGGG 58.829 55.000 0.00 0.00 0.00 4.79
2976 3351 0.398664 AAGGGACGGGATCGATTCCT 60.399 55.000 20.71 7.73 44.75 3.36
3043 3418 3.764466 CTCGGGCGACTCCAGCTT 61.764 66.667 0.00 0.00 36.21 3.74
3077 3452 0.537188 AGAGTACATGTTCCCCTGCG 59.463 55.000 2.30 0.00 0.00 5.18
3110 3485 2.743752 CGACGCCATTGCAGACCTG 61.744 63.158 0.00 0.00 37.32 4.00
3170 3545 2.351276 CTGCCGGGTAGCTTTGGT 59.649 61.111 2.18 0.00 0.00 3.67
3259 3634 4.399395 CGGGGCTGAGCTGCTTGA 62.399 66.667 2.53 0.00 0.00 3.02
3277 3652 4.802999 CTTGAAATTCCTCCAGTTTCTGC 58.197 43.478 0.00 0.00 33.99 4.26
3297 3672 0.251033 TGCTGCTCATTGCCAAGACT 60.251 50.000 0.00 0.00 42.00 3.24
3336 3711 3.814504 AGGGGAAGAATGTCATGTGTT 57.185 42.857 0.00 0.00 0.00 3.32
3369 3744 1.375908 GGCACATCGTCTCAAGCCA 60.376 57.895 0.00 0.00 41.63 4.75
3381 3756 1.893808 CAAGCCAACTGCCTCGTGT 60.894 57.895 0.00 0.00 42.71 4.49
3398 3773 0.671163 TGTCATTACCGGGCAACGTC 60.671 55.000 6.32 0.00 42.24 4.34
3399 3774 0.390735 GTCATTACCGGGCAACGTCT 60.391 55.000 6.32 0.00 42.24 4.18
3416 3791 1.133790 GTCTGCAAACTGATGGATGCC 59.866 52.381 0.00 0.00 38.00 4.40
3483 3858 1.893808 AGCGGCACCAGTCAACAAG 60.894 57.895 1.45 0.00 0.00 3.16
3550 3925 4.098654 TGAGAGATTCTGGGAACTCGATTC 59.901 45.833 0.00 0.00 36.48 2.52
3551 3926 3.067461 AGAGATTCTGGGAACTCGATTCG 59.933 47.826 0.00 0.00 38.31 3.34
3627 4002 0.250640 ACCCTGCTCTTGAGCAACAG 60.251 55.000 23.12 16.92 44.88 3.16
3797 4190 9.838339 GAATTAGTAGTAGTGGTGGTACTAGTA 57.162 37.037 0.00 0.00 37.64 1.82
3899 4293 6.317391 TGTTTTTGTTTTCCATTCATTCACCC 59.683 34.615 0.00 0.00 0.00 4.61
3900 4294 5.885449 TTTGTTTTCCATTCATTCACCCT 57.115 34.783 0.00 0.00 0.00 4.34
3901 4295 6.985653 TTTGTTTTCCATTCATTCACCCTA 57.014 33.333 0.00 0.00 0.00 3.53
3903 4297 5.640147 TGTTTTCCATTCATTCACCCTACT 58.360 37.500 0.00 0.00 0.00 2.57
3976 4370 1.448985 CCAATCGTCGTGTTTCCCAT 58.551 50.000 0.00 0.00 0.00 4.00
3977 4371 1.810151 CCAATCGTCGTGTTTCCCATT 59.190 47.619 0.00 0.00 0.00 3.16
3983 4377 4.066490 TCGTCGTGTTTCCCATTTATTGT 58.934 39.130 0.00 0.00 0.00 2.71
4003 5595 5.995565 TGTTGTACCACTAGAAGCATACT 57.004 39.130 0.00 0.00 0.00 2.12
4004 5596 6.354794 TGTTGTACCACTAGAAGCATACTT 57.645 37.500 0.00 0.00 39.43 2.24
4061 5676 1.134946 GTGGGCAATCAGGCATTGTAC 59.865 52.381 0.30 0.00 43.62 2.90
4088 5703 4.202141 TGGCTGAATTCACAAGTCCAAAAG 60.202 41.667 3.38 0.00 0.00 2.27
4099 5714 5.126384 CACAAGTCCAAAAGTAGGGAAACAA 59.874 40.000 0.00 0.00 34.34 2.83
4125 5740 2.229543 TCACAAGCAGCCATTAAGCAAG 59.770 45.455 0.00 0.00 34.23 4.01
4145 5760 5.625251 CAAGTTGAACACATATCACTGCTC 58.375 41.667 0.00 0.00 0.00 4.26
4157 5780 2.265367 TCACTGCTCAAGGGTCCATAA 58.735 47.619 0.00 0.00 0.00 1.90
4169 5792 6.386927 TCAAGGGTCCATAATTCTAGACATGT 59.613 38.462 0.00 0.00 0.00 3.21
4170 5793 7.567250 TCAAGGGTCCATAATTCTAGACATGTA 59.433 37.037 0.00 0.00 0.00 2.29
4211 5834 4.642466 TGTTCATACATGGGGTTGTACA 57.358 40.909 0.00 0.00 35.04 2.90
4264 5887 4.826733 AGTATTGACTGTTTCATGTGGCAA 59.173 37.500 0.00 0.00 33.41 4.52
4301 5924 9.391006 CCAGATTACCTACAACATTTAAAGCTA 57.609 33.333 0.00 0.00 0.00 3.32
4348 5972 0.811281 CTTCTGCCCGGTTCCATTTC 59.189 55.000 0.00 0.00 0.00 2.17
4349 5973 0.111446 TTCTGCCCGGTTCCATTTCA 59.889 50.000 0.00 0.00 0.00 2.69
4353 5977 2.958355 CTGCCCGGTTCCATTTCAATAT 59.042 45.455 0.00 0.00 0.00 1.28
4368 5993 9.051679 CCATTTCAATATAACGAGACCATACAA 57.948 33.333 0.00 0.00 0.00 2.41
4373 5998 9.309516 TCAATATAACGAGACCATACAAAGTTC 57.690 33.333 0.00 0.00 0.00 3.01
4399 6024 5.532025 AACTTATTACAAGCGACAGAAGC 57.468 39.130 0.00 0.00 0.00 3.86
4402 6027 5.292101 ACTTATTACAAGCGACAGAAGCATC 59.708 40.000 0.00 0.00 37.01 3.91
4403 6028 1.629013 TACAAGCGACAGAAGCATCG 58.371 50.000 0.00 0.00 41.32 3.84
4407 6032 3.698382 CGACAGAAGCATCGCCTC 58.302 61.111 0.00 0.00 0.00 4.70
4420 6045 0.318441 TCGCCTCCAGACAGTTTCAG 59.682 55.000 0.00 0.00 0.00 3.02
4423 6048 1.815408 GCCTCCAGACAGTTTCAGCAA 60.815 52.381 0.00 0.00 0.00 3.91
4432 6057 1.127582 CAGTTTCAGCAAGCTACTCGC 59.872 52.381 0.00 0.00 39.57 5.03
4437 6062 0.166814 CAGCAAGCTACTCGCCAAAC 59.833 55.000 0.00 0.00 40.39 2.93
4448 6073 1.537202 CTCGCCAAACAGGGAAAGAAG 59.463 52.381 0.00 0.00 38.09 2.85
4449 6074 1.142060 TCGCCAAACAGGGAAAGAAGA 59.858 47.619 0.00 0.00 38.09 2.87
4450 6075 1.266989 CGCCAAACAGGGAAAGAAGAC 59.733 52.381 0.00 0.00 38.09 3.01
4451 6076 2.306847 GCCAAACAGGGAAAGAAGACA 58.693 47.619 0.00 0.00 38.09 3.41
4452 6077 2.034685 GCCAAACAGGGAAAGAAGACAC 59.965 50.000 0.00 0.00 38.09 3.67
4453 6078 3.287222 CCAAACAGGGAAAGAAGACACA 58.713 45.455 0.00 0.00 0.00 3.72
4454 6079 3.066760 CCAAACAGGGAAAGAAGACACAC 59.933 47.826 0.00 0.00 0.00 3.82
4455 6080 3.644966 AACAGGGAAAGAAGACACACA 57.355 42.857 0.00 0.00 0.00 3.72
4456 6081 3.644966 ACAGGGAAAGAAGACACACAA 57.355 42.857 0.00 0.00 0.00 3.33
4457 6082 3.963129 ACAGGGAAAGAAGACACACAAA 58.037 40.909 0.00 0.00 0.00 2.83
4458 6083 3.947834 ACAGGGAAAGAAGACACACAAAG 59.052 43.478 0.00 0.00 0.00 2.77
4459 6084 4.199310 CAGGGAAAGAAGACACACAAAGA 58.801 43.478 0.00 0.00 0.00 2.52
4460 6085 4.823989 CAGGGAAAGAAGACACACAAAGAT 59.176 41.667 0.00 0.00 0.00 2.40
4461 6086 4.823989 AGGGAAAGAAGACACACAAAGATG 59.176 41.667 0.00 0.00 0.00 2.90
4462 6087 4.821805 GGGAAAGAAGACACACAAAGATGA 59.178 41.667 0.00 0.00 0.00 2.92
4463 6088 5.474876 GGGAAAGAAGACACACAAAGATGAT 59.525 40.000 0.00 0.00 0.00 2.45
4464 6089 6.655003 GGGAAAGAAGACACACAAAGATGATA 59.345 38.462 0.00 0.00 0.00 2.15
4465 6090 7.174946 GGGAAAGAAGACACACAAAGATGATAA 59.825 37.037 0.00 0.00 0.00 1.75
4466 6091 8.567948 GGAAAGAAGACACACAAAGATGATAAA 58.432 33.333 0.00 0.00 0.00 1.40
4467 6092 9.387123 GAAAGAAGACACACAAAGATGATAAAC 57.613 33.333 0.00 0.00 0.00 2.01
4468 6093 7.121974 AGAAGACACACAAAGATGATAAACG 57.878 36.000 0.00 0.00 0.00 3.60
4469 6094 6.706270 AGAAGACACACAAAGATGATAAACGT 59.294 34.615 0.00 0.00 0.00 3.99
4470 6095 7.870954 AGAAGACACACAAAGATGATAAACGTA 59.129 33.333 0.00 0.00 0.00 3.57
4471 6096 7.956420 AGACACACAAAGATGATAAACGTAA 57.044 32.000 0.00 0.00 0.00 3.18
4472 6097 8.547967 AGACACACAAAGATGATAAACGTAAT 57.452 30.769 0.00 0.00 0.00 1.89
4473 6098 8.656849 AGACACACAAAGATGATAAACGTAATC 58.343 33.333 0.00 0.00 0.00 1.75
4474 6099 8.547967 ACACACAAAGATGATAAACGTAATCT 57.452 30.769 10.99 3.08 0.00 2.40
4475 6100 8.656849 ACACACAAAGATGATAAACGTAATCTC 58.343 33.333 10.99 7.06 0.00 2.75
4476 6101 7.841277 CACACAAAGATGATAAACGTAATCTCG 59.159 37.037 10.99 0.00 0.00 4.04
4477 6102 7.010183 ACACAAAGATGATAAACGTAATCTCGG 59.990 37.037 10.99 4.48 34.94 4.63
4478 6103 6.018994 ACAAAGATGATAAACGTAATCTCGGC 60.019 38.462 10.99 0.00 34.94 5.54
4479 6104 4.227538 AGATGATAAACGTAATCTCGGCG 58.772 43.478 0.00 0.00 34.94 6.46
4480 6105 2.121786 TGATAAACGTAATCTCGGCGC 58.878 47.619 0.00 0.00 34.94 6.53
4481 6106 1.121967 GATAAACGTAATCTCGGCGCG 59.878 52.381 0.00 0.00 34.94 6.86
4482 6107 0.866906 TAAACGTAATCTCGGCGCGG 60.867 55.000 8.83 8.94 34.94 6.46
4483 6108 4.564116 ACGTAATCTCGGCGCGGG 62.564 66.667 15.48 3.80 34.94 6.13
4485 6110 4.587189 GTAATCTCGGCGCGGGCT 62.587 66.667 24.48 5.61 39.81 5.19
4486 6111 4.280494 TAATCTCGGCGCGGGCTC 62.280 66.667 24.48 13.13 39.81 4.70
4557 6182 2.121460 CCCCCTATTCCCCCTCCC 60.121 72.222 0.00 0.00 0.00 4.30
4558 6183 2.121460 CCCCTATTCCCCCTCCCC 60.121 72.222 0.00 0.00 0.00 4.81
4559 6184 2.749275 CCCCTATTCCCCCTCCCCT 61.749 68.421 0.00 0.00 0.00 4.79
4560 6185 1.151788 CCCTATTCCCCCTCCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
4561 6186 1.151788 CCTATTCCCCCTCCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
4562 6187 1.151788 CTATTCCCCCTCCCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
4563 6188 3.109571 TATTCCCCCTCCCCTCCCG 62.110 68.421 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.419484 ACAGTCTTTAAAAAGAATTGGGGG 57.581 37.500 6.72 0.00 45.77 5.40
2 3 7.947282 TGTACAGTCTTTAAAAAGAATTGGGG 58.053 34.615 6.72 0.00 45.77 4.96
15 16 9.278978 TGAGCATTTGTTATTGTACAGTCTTTA 57.721 29.630 0.00 0.00 0.00 1.85
21 22 8.450180 TGTATGTGAGCATTTGTTATTGTACAG 58.550 33.333 0.00 0.00 36.58 2.74
50 51 6.014925 TGTGTGCCTAAGAGTAAGTGTTCATA 60.015 38.462 0.00 0.00 0.00 2.15
55 56 3.552273 CGTGTGTGCCTAAGAGTAAGTGT 60.552 47.826 0.00 0.00 0.00 3.55
78 79 7.941919 ACAGACGCTCATAAAGATAGAATGTA 58.058 34.615 0.00 0.00 0.00 2.29
83 84 7.803279 TCTTACAGACGCTCATAAAGATAGA 57.197 36.000 0.00 0.00 0.00 1.98
95 96 3.181499 CGGTTCAGTATCTTACAGACGCT 60.181 47.826 0.00 0.00 0.00 5.07
102 103 8.136165 AGATGTTATGTCGGTTCAGTATCTTAC 58.864 37.037 0.00 0.00 0.00 2.34
104 105 7.113658 AGATGTTATGTCGGTTCAGTATCTT 57.886 36.000 0.00 0.00 0.00 2.40
112 113 7.481798 GTCAATTTCAAGATGTTATGTCGGTTC 59.518 37.037 0.00 0.00 0.00 3.62
114 115 6.402118 CGTCAATTTCAAGATGTTATGTCGGT 60.402 38.462 0.00 0.00 0.00 4.69
127 128 9.778993 ATTTATGATGACTTCGTCAATTTCAAG 57.221 29.630 5.26 0.00 45.96 3.02
158 159 3.462982 AGCATGTGTTTCGTCAACTACA 58.537 40.909 0.00 0.00 36.21 2.74
167 168 1.732259 GTAGTGGGAGCATGTGTTTCG 59.268 52.381 0.00 0.00 0.00 3.46
224 225 5.362430 TGCATCAGGGTTTAAGTTTTTGACT 59.638 36.000 0.00 0.00 41.47 3.41
227 228 5.600696 AGTGCATCAGGGTTTAAGTTTTTG 58.399 37.500 0.00 0.00 0.00 2.44
248 249 2.681344 GTTTTCTTGTGGTGGAACGAGT 59.319 45.455 0.00 0.00 38.12 4.18
361 362 4.473520 ACGCATGCTCCTTCCCCG 62.474 66.667 17.13 0.00 0.00 5.73
370 371 3.815401 ACTTTTTCTAGAACACGCATGCT 59.185 39.130 17.13 0.00 0.00 3.79
474 482 2.746277 CAGCGGAAGGAAACGGGG 60.746 66.667 0.00 0.00 0.00 5.73
500 508 2.498481 TCGGTCGATTTAGGTTGATGGT 59.502 45.455 0.00 0.00 0.00 3.55
501 509 3.173668 TCGGTCGATTTAGGTTGATGG 57.826 47.619 0.00 0.00 0.00 3.51
511 559 0.104120 TGCGGATGATCGGTCGATTT 59.896 50.000 7.32 0.00 34.60 2.17
522 570 2.186644 CGGGATGTGTGCGGATGA 59.813 61.111 0.00 0.00 0.00 2.92
568 621 1.461091 GGAGTGACGTGGTGGAGTGA 61.461 60.000 0.00 0.00 0.00 3.41
633 686 0.667993 TTTTGCTTGGTGGCGAAGAG 59.332 50.000 0.00 0.00 36.99 2.85
847 900 1.234615 GCAGTTGCAGAAGCGGGTAA 61.235 55.000 0.00 0.00 46.23 2.85
1138 1200 2.039418 CGGGATCAGGTGATGGTCTAA 58.961 52.381 0.00 0.00 39.21 2.10
1140 1202 1.690219 GCGGGATCAGGTGATGGTCT 61.690 60.000 0.00 0.00 39.21 3.85
1281 1343 2.042762 CCCCAGGAGATGACCCCA 59.957 66.667 0.00 0.00 0.00 4.96
1492 1577 2.028112 TGCCAGATACGGATAATCCAGC 60.028 50.000 0.00 0.00 35.91 4.85
1493 1578 3.259374 AGTGCCAGATACGGATAATCCAG 59.741 47.826 0.00 0.00 35.91 3.86
1494 1579 3.239449 AGTGCCAGATACGGATAATCCA 58.761 45.455 0.00 0.00 35.91 3.41
1495 1580 3.511934 AGAGTGCCAGATACGGATAATCC 59.488 47.826 0.00 0.00 0.00 3.01
1497 1582 3.898123 ACAGAGTGCCAGATACGGATAAT 59.102 43.478 0.00 0.00 0.00 1.28
1499 1584 2.945456 ACAGAGTGCCAGATACGGATA 58.055 47.619 0.00 0.00 0.00 2.59
1501 1586 1.557099 AACAGAGTGCCAGATACGGA 58.443 50.000 0.00 0.00 0.00 4.69
1502 1587 2.271800 GAAACAGAGTGCCAGATACGG 58.728 52.381 0.00 0.00 0.00 4.02
1503 1588 2.926200 CTGAAACAGAGTGCCAGATACG 59.074 50.000 0.00 0.00 32.44 3.06
1534 1644 7.602265 CAGAAACCAGAAGGAACAAAAAGAAAA 59.398 33.333 0.00 0.00 38.69 2.29
1575 1686 9.875691 ATAGAAATATATACGCAGCAGATTTGA 57.124 29.630 0.00 0.00 0.00 2.69
1696 1833 1.133915 ACAGTTCTTTCGGGAAAGGCA 60.134 47.619 18.27 5.81 45.80 4.75
1737 1874 4.883759 TCAACTCCTCAGGAATCAGGATA 58.116 43.478 0.00 0.00 38.18 2.59
1891 2028 2.362169 AAATATGCTGCCGCGTTTTT 57.638 40.000 4.92 2.53 39.65 1.94
1892 2029 1.991965 CAAAATATGCTGCCGCGTTTT 59.008 42.857 4.92 2.84 39.65 2.43
1893 2030 1.067915 ACAAAATATGCTGCCGCGTTT 60.068 42.857 4.92 0.00 39.65 3.60
1894 2031 0.525761 ACAAAATATGCTGCCGCGTT 59.474 45.000 4.92 0.00 39.65 4.84
1895 2032 0.525761 AACAAAATATGCTGCCGCGT 59.474 45.000 4.92 0.00 39.65 6.01
1896 2033 1.191096 GAACAAAATATGCTGCCGCG 58.809 50.000 0.00 0.00 39.65 6.46
1897 2034 2.187707 CAGAACAAAATATGCTGCCGC 58.812 47.619 0.00 0.00 0.00 6.53
1898 2035 3.492421 ACAGAACAAAATATGCTGCCG 57.508 42.857 0.00 0.00 0.00 5.69
1899 2036 6.237915 GCAAATACAGAACAAAATATGCTGCC 60.238 38.462 0.00 0.00 0.00 4.85
1900 2037 6.237915 GGCAAATACAGAACAAAATATGCTGC 60.238 38.462 0.00 0.00 0.00 5.25
1901 2038 6.256321 GGGCAAATACAGAACAAAATATGCTG 59.744 38.462 0.00 0.00 0.00 4.41
1902 2039 6.070881 TGGGCAAATACAGAACAAAATATGCT 60.071 34.615 0.00 0.00 0.00 3.79
1903 2040 6.105333 TGGGCAAATACAGAACAAAATATGC 58.895 36.000 0.00 0.00 0.00 3.14
1904 2041 9.248291 GTATGGGCAAATACAGAACAAAATATG 57.752 33.333 5.07 0.00 33.90 1.78
1905 2042 9.200817 AGTATGGGCAAATACAGAACAAAATAT 57.799 29.630 10.92 0.00 35.79 1.28
1906 2043 8.465999 CAGTATGGGCAAATACAGAACAAAATA 58.534 33.333 10.92 0.00 35.79 1.40
1907 2044 7.322664 CAGTATGGGCAAATACAGAACAAAAT 58.677 34.615 10.92 0.00 35.79 1.82
1908 2045 6.686630 CAGTATGGGCAAATACAGAACAAAA 58.313 36.000 10.92 0.00 35.79 2.44
1909 2046 5.336372 GCAGTATGGGCAAATACAGAACAAA 60.336 40.000 10.92 0.00 35.79 2.83
1910 2047 4.157656 GCAGTATGGGCAAATACAGAACAA 59.842 41.667 10.92 0.00 35.79 2.83
1911 2048 3.694072 GCAGTATGGGCAAATACAGAACA 59.306 43.478 10.92 0.00 35.79 3.18
1912 2049 3.694072 TGCAGTATGGGCAAATACAGAAC 59.306 43.478 10.92 0.75 38.54 3.01
1913 2050 3.961849 TGCAGTATGGGCAAATACAGAA 58.038 40.909 10.92 0.00 38.54 3.02
1914 2051 3.643199 TGCAGTATGGGCAAATACAGA 57.357 42.857 10.92 0.00 38.54 3.41
1922 2059 2.530460 AGGAATTTGCAGTATGGGCA 57.470 45.000 0.00 0.00 40.00 5.36
1923 2060 3.026694 AGAAGGAATTTGCAGTATGGGC 58.973 45.455 0.00 0.00 35.86 5.36
1924 2061 5.474876 GGATAGAAGGAATTTGCAGTATGGG 59.525 44.000 0.00 0.00 35.86 4.00
1925 2062 6.064060 TGGATAGAAGGAATTTGCAGTATGG 58.936 40.000 0.00 0.00 35.86 2.74
1926 2063 7.572523 TTGGATAGAAGGAATTTGCAGTATG 57.427 36.000 0.00 0.00 40.87 2.39
1927 2064 9.512588 CTATTGGATAGAAGGAATTTGCAGTAT 57.487 33.333 0.00 0.00 34.77 2.12
1928 2065 8.713971 TCTATTGGATAGAAGGAATTTGCAGTA 58.286 33.333 0.00 0.00 38.85 2.74
1929 2066 7.577303 TCTATTGGATAGAAGGAATTTGCAGT 58.423 34.615 0.00 0.00 38.85 4.40
1930 2067 7.935755 TCTCTATTGGATAGAAGGAATTTGCAG 59.064 37.037 0.00 0.00 41.07 4.41
1931 2068 7.805163 TCTCTATTGGATAGAAGGAATTTGCA 58.195 34.615 0.00 0.00 41.07 4.08
1932 2069 8.153550 TCTCTCTATTGGATAGAAGGAATTTGC 58.846 37.037 0.00 0.00 41.07 3.68
1937 2074 9.892130 GTTTTTCTCTCTATTGGATAGAAGGAA 57.108 33.333 0.00 4.50 41.07 3.36
1938 2075 8.198109 CGTTTTTCTCTCTATTGGATAGAAGGA 58.802 37.037 0.00 0.00 41.07 3.36
1939 2076 7.042389 GCGTTTTTCTCTCTATTGGATAGAAGG 60.042 40.741 0.00 0.00 41.07 3.46
1940 2077 7.306283 CGCGTTTTTCTCTCTATTGGATAGAAG 60.306 40.741 0.00 1.81 41.07 2.85
1941 2078 6.475727 CGCGTTTTTCTCTCTATTGGATAGAA 59.524 38.462 0.00 0.00 41.07 2.10
1942 2079 5.977725 CGCGTTTTTCTCTCTATTGGATAGA 59.022 40.000 0.00 0.00 39.46 1.98
1943 2080 5.175856 CCGCGTTTTTCTCTCTATTGGATAG 59.824 44.000 4.92 0.00 0.00 2.08
1944 2081 5.047847 CCGCGTTTTTCTCTCTATTGGATA 58.952 41.667 4.92 0.00 0.00 2.59
1945 2082 3.871594 CCGCGTTTTTCTCTCTATTGGAT 59.128 43.478 4.92 0.00 0.00 3.41
1946 2083 3.259064 CCGCGTTTTTCTCTCTATTGGA 58.741 45.455 4.92 0.00 0.00 3.53
1947 2084 2.223044 GCCGCGTTTTTCTCTCTATTGG 60.223 50.000 4.92 0.00 0.00 3.16
1948 2085 2.415168 TGCCGCGTTTTTCTCTCTATTG 59.585 45.455 4.92 0.00 0.00 1.90
1955 2093 0.446222 TATGCTGCCGCGTTTTTCTC 59.554 50.000 4.92 0.00 39.65 2.87
1957 2095 1.908065 AATATGCTGCCGCGTTTTTC 58.092 45.000 4.92 0.00 39.65 2.29
2083 2221 9.281371 TCTGAGAAATATGGCAATATGAAGAAG 57.719 33.333 0.00 0.00 0.00 2.85
2096 2234 5.235186 CGGTGCTAAAGTCTGAGAAATATGG 59.765 44.000 0.00 0.00 0.00 2.74
2106 2244 4.688879 TGAAATACACGGTGCTAAAGTCTG 59.311 41.667 8.30 0.00 0.00 3.51
2187 2503 1.320507 GGTGTTACCCGCCAGAAAAA 58.679 50.000 0.00 0.00 43.67 1.94
2206 2522 4.142687 ACAACACAGGAAGAAAACTGAACG 60.143 41.667 0.00 0.00 38.09 3.95
2216 2532 4.504864 CCATCCTTGTACAACACAGGAAGA 60.505 45.833 16.14 0.00 38.19 2.87
2226 2542 1.638589 CCCCTTCCCATCCTTGTACAA 59.361 52.381 8.28 8.28 0.00 2.41
2227 2543 1.295020 CCCCTTCCCATCCTTGTACA 58.705 55.000 0.00 0.00 0.00 2.90
2228 2544 0.551396 CCCCCTTCCCATCCTTGTAC 59.449 60.000 0.00 0.00 0.00 2.90
2230 2546 1.151361 ACCCCCTTCCCATCCTTGT 60.151 57.895 0.00 0.00 0.00 3.16
2231 2547 1.214305 TCACCCCCTTCCCATCCTTG 61.214 60.000 0.00 0.00 0.00 3.61
2232 2548 0.254299 ATCACCCCCTTCCCATCCTT 60.254 55.000 0.00 0.00 0.00 3.36
2233 2549 0.995675 CATCACCCCCTTCCCATCCT 60.996 60.000 0.00 0.00 0.00 3.24
2234 2550 1.289244 ACATCACCCCCTTCCCATCC 61.289 60.000 0.00 0.00 0.00 3.51
2235 2551 0.631212 AACATCACCCCCTTCCCATC 59.369 55.000 0.00 0.00 0.00 3.51
2236 2552 0.336048 CAACATCACCCCCTTCCCAT 59.664 55.000 0.00 0.00 0.00 4.00
2240 2556 1.076549 TGGCAACATCACCCCCTTC 59.923 57.895 0.00 0.00 46.17 3.46
2256 2572 2.381911 AGCCAAATTGCTCCATACTGG 58.618 47.619 0.00 0.00 36.75 4.00
2275 2591 7.872993 TGAACCTCTAACTGAACAAATACTGAG 59.127 37.037 0.00 0.00 0.00 3.35
2294 2610 3.318557 CGGAGGGAGTATAACTGAACCTC 59.681 52.174 0.00 0.00 38.48 3.85
2299 2615 3.294214 GGAACGGAGGGAGTATAACTGA 58.706 50.000 0.00 0.00 0.00 3.41
2300 2616 3.028850 TGGAACGGAGGGAGTATAACTG 58.971 50.000 0.00 0.00 0.00 3.16
2301 2617 3.393426 TGGAACGGAGGGAGTATAACT 57.607 47.619 0.00 0.00 0.00 2.24
2302 2618 4.476628 TTTGGAACGGAGGGAGTATAAC 57.523 45.455 0.00 0.00 0.00 1.89
2303 2619 5.703730 ATTTTGGAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
2304 2620 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
2305 2621 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
2306 2622 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2307 2623 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2308 2624 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2309 2625 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2310 2626 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2311 2627 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2312 2628 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2313 2629 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2314 2630 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2315 2631 5.835113 ATTGGGTCATCTATTTTGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
2316 2632 7.877612 ACAAAATTGGGTCATCTATTTTGGAAC 59.122 33.333 19.76 0.00 45.43 3.62
2317 2633 7.972301 ACAAAATTGGGTCATCTATTTTGGAA 58.028 30.769 19.76 0.00 45.43 3.53
2318 2634 7.552050 ACAAAATTGGGTCATCTATTTTGGA 57.448 32.000 19.76 0.00 45.43 3.53
2319 2635 8.531146 AGTACAAAATTGGGTCATCTATTTTGG 58.469 33.333 19.76 9.08 45.43 3.28
2320 2636 9.573133 GAGTACAAAATTGGGTCATCTATTTTG 57.427 33.333 16.57 16.57 46.06 2.44
2321 2637 9.308000 TGAGTACAAAATTGGGTCATCTATTTT 57.692 29.630 0.00 0.00 32.14 1.82
2322 2638 8.739972 GTGAGTACAAAATTGGGTCATCTATTT 58.260 33.333 0.00 0.00 0.00 1.40
2323 2639 8.109634 AGTGAGTACAAAATTGGGTCATCTATT 58.890 33.333 0.00 0.00 0.00 1.73
2324 2640 7.633789 AGTGAGTACAAAATTGGGTCATCTAT 58.366 34.615 0.00 0.00 0.00 1.98
2325 2641 7.016153 AGTGAGTACAAAATTGGGTCATCTA 57.984 36.000 0.00 0.00 0.00 1.98
2326 2642 5.880901 AGTGAGTACAAAATTGGGTCATCT 58.119 37.500 0.00 0.00 0.00 2.90
2327 2643 6.575162 AAGTGAGTACAAAATTGGGTCATC 57.425 37.500 0.00 0.00 0.00 2.92
2328 2644 6.239289 CCAAAGTGAGTACAAAATTGGGTCAT 60.239 38.462 0.00 0.00 34.51 3.06
2329 2645 5.068460 CCAAAGTGAGTACAAAATTGGGTCA 59.932 40.000 0.00 0.00 34.51 4.02
2330 2646 5.508994 CCCAAAGTGAGTACAAAATTGGGTC 60.509 44.000 20.01 0.00 43.13 4.46
2331 2647 4.343814 CCCAAAGTGAGTACAAAATTGGGT 59.656 41.667 20.01 0.00 43.13 4.51
2332 2648 4.881920 CCCAAAGTGAGTACAAAATTGGG 58.118 43.478 16.87 16.87 42.86 4.12
2333 2649 5.068460 TGACCCAAAGTGAGTACAAAATTGG 59.932 40.000 0.00 3.28 36.20 3.16
2334 2650 6.142818 TGACCCAAAGTGAGTACAAAATTG 57.857 37.500 0.00 0.00 0.00 2.32
2335 2651 6.777580 AGATGACCCAAAGTGAGTACAAAATT 59.222 34.615 0.00 0.00 0.00 1.82
2336 2652 6.306987 AGATGACCCAAAGTGAGTACAAAAT 58.693 36.000 0.00 0.00 0.00 1.82
2337 2653 5.690865 AGATGACCCAAAGTGAGTACAAAA 58.309 37.500 0.00 0.00 0.00 2.44
2338 2654 5.304686 AGATGACCCAAAGTGAGTACAAA 57.695 39.130 0.00 0.00 0.00 2.83
2339 2655 4.974645 AGATGACCCAAAGTGAGTACAA 57.025 40.909 0.00 0.00 0.00 2.41
2340 2656 6.620877 AATAGATGACCCAAAGTGAGTACA 57.379 37.500 0.00 0.00 0.00 2.90
2341 2657 7.148239 CCAAAATAGATGACCCAAAGTGAGTAC 60.148 40.741 0.00 0.00 0.00 2.73
2342 2658 6.884295 CCAAAATAGATGACCCAAAGTGAGTA 59.116 38.462 0.00 0.00 0.00 2.59
2343 2659 5.711976 CCAAAATAGATGACCCAAAGTGAGT 59.288 40.000 0.00 0.00 0.00 3.41
2344 2660 5.945784 TCCAAAATAGATGACCCAAAGTGAG 59.054 40.000 0.00 0.00 0.00 3.51
2345 2661 5.886609 TCCAAAATAGATGACCCAAAGTGA 58.113 37.500 0.00 0.00 0.00 3.41
2346 2662 6.389906 GTTCCAAAATAGATGACCCAAAGTG 58.610 40.000 0.00 0.00 0.00 3.16
2347 2663 5.183140 CGTTCCAAAATAGATGACCCAAAGT 59.817 40.000 0.00 0.00 0.00 2.66
2348 2664 5.393027 CCGTTCCAAAATAGATGACCCAAAG 60.393 44.000 0.00 0.00 0.00 2.77
2349 2665 4.461081 CCGTTCCAAAATAGATGACCCAAA 59.539 41.667 0.00 0.00 0.00 3.28
2350 2666 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2351 2667 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2352 2668 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2353 2669 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2354 2670 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2355 2671 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2356 2672 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2357 2673 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2358 2674 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2359 2675 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2360 2676 3.453353 CCTACTCCCTCCGTTCCAAAATA 59.547 47.826 0.00 0.00 0.00 1.40
2361 2677 2.238898 CCTACTCCCTCCGTTCCAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
2362 2678 1.626825 CCTACTCCCTCCGTTCCAAAA 59.373 52.381 0.00 0.00 0.00 2.44
2363 2679 1.272807 CCTACTCCCTCCGTTCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2364 2680 0.115745 ACCTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 0.00 3.53
2365 2681 0.613853 CACCTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 0.00 3.53
2366 2682 1.328430 CCACCTACTCCCTCCGTTCC 61.328 65.000 0.00 0.00 0.00 3.62
2367 2683 1.957765 GCCACCTACTCCCTCCGTTC 61.958 65.000 0.00 0.00 0.00 3.95
2368 2684 1.988406 GCCACCTACTCCCTCCGTT 60.988 63.158 0.00 0.00 0.00 4.44
2369 2685 2.363925 GCCACCTACTCCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
2370 2686 1.987855 TTGCCACCTACTCCCTCCG 60.988 63.158 0.00 0.00 0.00 4.63
2371 2687 0.910088 AGTTGCCACCTACTCCCTCC 60.910 60.000 0.00 0.00 0.00 4.30
2372 2688 1.481363 GTAGTTGCCACCTACTCCCTC 59.519 57.143 0.00 0.00 33.54 4.30
2373 2689 1.078989 AGTAGTTGCCACCTACTCCCT 59.921 52.381 0.00 0.00 40.83 4.20
2374 2690 1.569653 AGTAGTTGCCACCTACTCCC 58.430 55.000 0.00 0.00 40.83 4.30
2375 2691 3.363627 AGTAGTAGTTGCCACCTACTCC 58.636 50.000 5.09 0.00 43.07 3.85
2376 2692 5.192176 ACTAGTAGTAGTTGCCACCTACTC 58.808 45.833 5.09 0.00 43.07 2.59
2377 2693 5.190357 ACTAGTAGTAGTTGCCACCTACT 57.810 43.478 7.14 7.14 45.34 2.57
2378 2694 6.997476 AGATACTAGTAGTAGTTGCCACCTAC 59.003 42.308 15.34 0.00 40.23 3.18
2379 2695 7.146715 AGATACTAGTAGTAGTTGCCACCTA 57.853 40.000 15.34 0.00 40.23 3.08
2380 2696 6.015991 AGATACTAGTAGTAGTTGCCACCT 57.984 41.667 15.34 2.53 40.23 4.00
2381 2697 6.712179 AAGATACTAGTAGTAGTTGCCACC 57.288 41.667 15.34 0.52 40.23 4.61
2420 2736 8.988934 GTTCAGTGATATTTTTAGTGTCACTCA 58.011 33.333 9.26 0.00 43.37 3.41
2512 2887 8.617809 GTTAAAAACTAACAATGAGGTCACTGA 58.382 33.333 0.00 0.00 0.00 3.41
2513 2888 8.402472 TGTTAAAAACTAACAATGAGGTCACTG 58.598 33.333 0.00 0.00 34.84 3.66
2514 2889 8.514330 TGTTAAAAACTAACAATGAGGTCACT 57.486 30.769 0.00 0.00 34.84 3.41
2515 2890 9.394477 GATGTTAAAAACTAACAATGAGGTCAC 57.606 33.333 1.76 0.00 40.32 3.67
2516 2891 9.349713 AGATGTTAAAAACTAACAATGAGGTCA 57.650 29.630 1.76 0.00 40.32 4.02
2565 2940 4.823442 CCATCTATTAGCATGAACCTTGCA 59.177 41.667 0.00 0.00 42.62 4.08
2580 2955 3.197766 TCGTGAGCAAACTCCCATCTATT 59.802 43.478 0.00 0.00 42.74 1.73
2680 3055 4.100653 TGAAGATAGATGAACCAGGCTGAG 59.899 45.833 17.94 8.80 0.00 3.35
2781 3156 1.841302 CTGGCCACCTCCTGTAGCAA 61.841 60.000 0.00 0.00 32.72 3.91
2873 3248 3.240134 GACCACCTGCTTCTGCCGA 62.240 63.158 0.00 0.00 38.71 5.54
2936 3311 0.842030 TCCCCCTGTGCATCTTGAGT 60.842 55.000 0.00 0.00 0.00 3.41
2953 3328 0.828343 ATCGATCCCGTCCCTTCTCC 60.828 60.000 0.00 0.00 37.05 3.71
2976 3351 2.900546 GGAACTTCCTCTTCACTCTGGA 59.099 50.000 0.00 0.00 32.53 3.86
3077 3452 3.422303 TCGTGCGCAACTGGATGC 61.422 61.111 14.00 0.00 42.94 3.91
3110 3485 3.070748 GTCTTCCAGGAGAAAACTCTGC 58.929 50.000 0.00 0.00 32.88 4.26
3163 3538 0.670854 GACTCCGTCCAGACCAAAGC 60.671 60.000 0.00 0.00 0.00 3.51
3170 3545 0.965866 ATGCTTCGACTCCGTCCAGA 60.966 55.000 0.00 0.00 37.05 3.86
3227 3602 0.322187 CCCCGGTTCCGAAATCTTGT 60.322 55.000 13.08 0.00 0.00 3.16
3234 3609 3.702048 CTCAGCCCCGGTTCCGAA 61.702 66.667 13.08 0.00 0.00 4.30
3259 3634 2.560105 GCAGCAGAAACTGGAGGAATTT 59.440 45.455 0.00 0.00 38.16 1.82
3336 3711 0.615331 GTGCCATCAGTTCCTCCTGA 59.385 55.000 0.00 0.00 45.06 3.86
3347 3722 2.008543 GCTTGAGACGATGTGCCATCA 61.009 52.381 13.41 0.00 0.00 3.07
3369 3744 1.671850 CGGTAATGACACGAGGCAGTT 60.672 52.381 0.00 0.00 0.00 3.16
3381 3756 0.390603 CAGACGTTGCCCGGTAATGA 60.391 55.000 13.84 0.00 42.24 2.57
3398 3773 0.099968 CGGCATCCATCAGTTTGCAG 59.900 55.000 0.00 0.00 36.82 4.41
3399 3774 0.322366 TCGGCATCCATCAGTTTGCA 60.322 50.000 0.00 0.00 36.82 4.08
3416 3791 1.135024 CCCCAAATTTGCTCACCATCG 60.135 52.381 12.92 0.00 0.00 3.84
3483 3858 7.719871 TTAGATAGGGATCACTAACATAGGC 57.280 40.000 9.19 0.00 34.17 3.93
3550 3925 2.753966 CCAGTGCCTCCAAATCGCG 61.754 63.158 0.00 0.00 0.00 5.87
3551 3926 0.749454 ATCCAGTGCCTCCAAATCGC 60.749 55.000 0.00 0.00 0.00 4.58
3552 3927 1.019673 CATCCAGTGCCTCCAAATCG 58.980 55.000 0.00 0.00 0.00 3.34
3553 3928 2.425143 TCATCCAGTGCCTCCAAATC 57.575 50.000 0.00 0.00 0.00 2.17
3554 3929 2.662866 CATCATCCAGTGCCTCCAAAT 58.337 47.619 0.00 0.00 0.00 2.32
3555 3930 1.341285 CCATCATCCAGTGCCTCCAAA 60.341 52.381 0.00 0.00 0.00 3.28
3556 3931 0.256752 CCATCATCCAGTGCCTCCAA 59.743 55.000 0.00 0.00 0.00 3.53
3557 3932 0.621280 TCCATCATCCAGTGCCTCCA 60.621 55.000 0.00 0.00 0.00 3.86
3558 3933 0.108207 CTCCATCATCCAGTGCCTCC 59.892 60.000 0.00 0.00 0.00 4.30
3627 4002 5.028549 TCTATGGCTTCATGTTTCCTCTC 57.971 43.478 0.00 0.00 32.59 3.20
3670 4045 2.227865 GGATCGAGCATCAGACCTACTC 59.772 54.545 1.84 0.00 32.33 2.59
3751 4126 5.869649 TTCTTAGTGCCATAGTGAGCATA 57.130 39.130 0.00 0.00 41.86 3.14
3752 4127 4.760530 TTCTTAGTGCCATAGTGAGCAT 57.239 40.909 0.00 0.00 41.86 3.79
3797 4190 5.349270 GGAAAACAAAAACAAACCGCTAGTT 59.651 36.000 0.00 0.00 41.81 2.24
3976 4370 9.158233 GTATGCTTCTAGTGGTACAACAATAAA 57.842 33.333 2.54 0.00 44.16 1.40
3977 4371 8.537016 AGTATGCTTCTAGTGGTACAACAATAA 58.463 33.333 2.54 0.00 44.16 1.40
4061 5676 3.304928 GGACTTGTGAATTCAGCCAACAG 60.305 47.826 8.80 2.66 0.00 3.16
4088 5703 5.041287 GCTTGTGAGTTTTTGTTTCCCTAC 58.959 41.667 0.00 0.00 0.00 3.18
4099 5714 4.797275 GCTTAATGGCTGCTTGTGAGTTTT 60.797 41.667 0.00 0.00 0.00 2.43
4125 5740 5.391310 CCTTGAGCAGTGATATGTGTTCAAC 60.391 44.000 0.00 0.00 38.50 3.18
4145 5760 6.595682 ACATGTCTAGAATTATGGACCCTTG 58.404 40.000 13.22 10.58 0.00 3.61
4197 5820 1.203125 CCCCTTTGTACAACCCCATGT 60.203 52.381 8.07 0.00 37.32 3.21
4211 5834 4.355889 ACAACTGTATAACCCTTCCCCTTT 59.644 41.667 0.00 0.00 0.00 3.11
4255 5878 0.038892 GTTGTCCAGCTTGCCACATG 60.039 55.000 0.00 0.00 0.00 3.21
4257 5880 1.827789 GGTTGTCCAGCTTGCCACA 60.828 57.895 0.00 0.00 0.00 4.17
4258 5881 2.564721 GGGTTGTCCAGCTTGCCAC 61.565 63.158 0.00 0.00 35.00 5.01
4348 5972 9.314321 AGAACTTTGTATGGTCTCGTTATATTG 57.686 33.333 0.00 0.00 0.00 1.90
4349 5973 9.314321 CAGAACTTTGTATGGTCTCGTTATATT 57.686 33.333 0.00 0.00 0.00 1.28
4353 5977 6.092955 ACAGAACTTTGTATGGTCTCGTTA 57.907 37.500 0.00 0.00 0.00 3.18
4399 6024 1.338105 TGAAACTGTCTGGAGGCGATG 60.338 52.381 0.00 0.00 0.00 3.84
4402 6027 1.294659 GCTGAAACTGTCTGGAGGCG 61.295 60.000 0.00 0.00 0.00 5.52
4403 6028 0.250467 TGCTGAAACTGTCTGGAGGC 60.250 55.000 0.00 0.00 0.00 4.70
4407 6032 1.602311 AGCTTGCTGAAACTGTCTGG 58.398 50.000 0.00 0.00 0.00 3.86
4432 6057 3.066760 GTGTGTCTTCTTTCCCTGTTTGG 59.933 47.826 0.00 0.00 0.00 3.28
4437 6062 4.199310 TCTTTGTGTGTCTTCTTTCCCTG 58.801 43.478 0.00 0.00 0.00 4.45
4448 6073 8.656849 AGATTACGTTTATCATCTTTGTGTGTC 58.343 33.333 0.00 0.00 0.00 3.67
4449 6074 8.547967 AGATTACGTTTATCATCTTTGTGTGT 57.452 30.769 0.00 0.00 0.00 3.72
4450 6075 7.841277 CGAGATTACGTTTATCATCTTTGTGTG 59.159 37.037 0.00 0.00 0.00 3.82
4451 6076 7.010183 CCGAGATTACGTTTATCATCTTTGTGT 59.990 37.037 0.00 0.00 0.00 3.72
4452 6077 7.337718 CCGAGATTACGTTTATCATCTTTGTG 58.662 38.462 0.00 0.00 0.00 3.33
4453 6078 6.018994 GCCGAGATTACGTTTATCATCTTTGT 60.019 38.462 0.00 0.00 0.00 2.83
4454 6079 6.355638 GCCGAGATTACGTTTATCATCTTTG 58.644 40.000 0.00 0.00 0.00 2.77
4455 6080 5.175126 CGCCGAGATTACGTTTATCATCTTT 59.825 40.000 0.00 0.00 0.00 2.52
4456 6081 4.680110 CGCCGAGATTACGTTTATCATCTT 59.320 41.667 0.00 0.00 0.00 2.40
4457 6082 4.227538 CGCCGAGATTACGTTTATCATCT 58.772 43.478 0.00 0.00 0.00 2.90
4458 6083 3.181543 GCGCCGAGATTACGTTTATCATC 60.182 47.826 0.00 0.00 0.00 2.92
4459 6084 2.729882 GCGCCGAGATTACGTTTATCAT 59.270 45.455 0.00 0.00 0.00 2.45
4460 6085 2.121786 GCGCCGAGATTACGTTTATCA 58.878 47.619 0.00 0.00 0.00 2.15
4461 6086 1.121967 CGCGCCGAGATTACGTTTATC 59.878 52.381 0.00 0.00 0.00 1.75
4462 6087 1.126079 CGCGCCGAGATTACGTTTAT 58.874 50.000 0.00 0.00 0.00 1.40
4463 6088 0.866906 CCGCGCCGAGATTACGTTTA 60.867 55.000 0.00 0.00 0.00 2.01
4464 6089 2.162754 CCGCGCCGAGATTACGTTT 61.163 57.895 0.00 0.00 0.00 3.60
4465 6090 2.581409 CCGCGCCGAGATTACGTT 60.581 61.111 0.00 0.00 0.00 3.99
4466 6091 4.564116 CCCGCGCCGAGATTACGT 62.564 66.667 0.00 0.00 0.00 3.57
4468 6093 4.587189 AGCCCGCGCCGAGATTAC 62.587 66.667 0.00 0.00 34.57 1.89
4469 6094 4.280494 GAGCCCGCGCCGAGATTA 62.280 66.667 0.00 0.00 34.57 1.75
4540 6165 2.121460 GGGAGGGGGAATAGGGGG 60.121 72.222 0.00 0.00 0.00 5.40
4541 6166 2.121460 GGGGAGGGGGAATAGGGG 60.121 72.222 0.00 0.00 0.00 4.79
4542 6167 1.151788 GAGGGGAGGGGGAATAGGG 60.152 68.421 0.00 0.00 0.00 3.53
4543 6168 1.151788 GGAGGGGAGGGGGAATAGG 60.152 68.421 0.00 0.00 0.00 2.57
4544 6169 1.151788 GGGAGGGGAGGGGGAATAG 60.152 68.421 0.00 0.00 0.00 1.73
4545 6170 3.052449 GGGAGGGGAGGGGGAATA 58.948 66.667 0.00 0.00 0.00 1.75
4546 6171 4.516326 CGGGAGGGGAGGGGGAAT 62.516 72.222 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.