Multiple sequence alignment - TraesCS2B01G231700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G231700 chr2B 100.000 5050 0 0 1 5050 228757409 228762458 0.000000e+00 9326.0
1 TraesCS2B01G231700 chr2B 84.062 960 89 25 6 944 741465324 741464408 0.000000e+00 867.0
2 TraesCS2B01G231700 chr2B 93.243 370 15 2 4185 4554 228840099 228840458 2.070000e-148 536.0
3 TraesCS2B01G231700 chr2B 96.444 225 6 1 4828 5050 17118278 17118054 2.220000e-98 370.0
4 TraesCS2B01G231700 chr3D 98.042 1685 29 3 2622 4302 601498753 601497069 0.000000e+00 2926.0
5 TraesCS2B01G231700 chr3D 97.790 1674 34 1 954 2624 601500458 601498785 0.000000e+00 2883.0
6 TraesCS2B01G231700 chr3D 96.038 530 19 1 4303 4832 601497030 601496503 0.000000e+00 861.0
7 TraesCS2B01G231700 chr3D 94.293 368 9 3 4187 4554 601482433 601482078 2.050000e-153 553.0
8 TraesCS2B01G231700 chr3B 83.925 958 89 25 6 941 785329371 785330285 0.000000e+00 856.0
9 TraesCS2B01G231700 chr6B 79.886 1054 194 14 3004 4045 71867809 71866762 0.000000e+00 756.0
10 TraesCS2B01G231700 chr6B 86.747 83 11 0 1754 1836 714342638 714342556 5.380000e-15 93.5
11 TraesCS2B01G231700 chr6B 81.915 94 16 1 854 946 50070206 50070299 1.510000e-10 78.7
12 TraesCS2B01G231700 chr6D 88.023 526 36 9 6 528 54032973 54032472 9.360000e-167 597.0
13 TraesCS2B01G231700 chr6D 85.816 423 33 10 6 416 464899817 464899410 1.680000e-114 424.0
14 TraesCS2B01G231700 chr6D 85.000 380 28 10 572 942 54032454 54032095 4.810000e-95 359.0
15 TraesCS2B01G231700 chr6D 76.018 221 32 11 739 941 11761199 11760982 1.500000e-15 95.3
16 TraesCS2B01G231700 chr6D 84.337 83 13 0 1754 1836 468170436 468170354 1.170000e-11 82.4
17 TraesCS2B01G231700 chr5B 99.103 223 2 0 4828 5050 64729892 64730114 7.880000e-108 401.0
18 TraesCS2B01G231700 chr5B 95.614 228 10 0 4823 5050 711718979 711718752 2.870000e-97 366.0
19 TraesCS2B01G231700 chrUn 96.087 230 8 1 4822 5050 51911296 51911067 1.720000e-99 374.0
20 TraesCS2B01G231700 chrUn 96.087 230 8 1 4822 5050 290972482 290972253 1.720000e-99 374.0
21 TraesCS2B01G231700 chrUn 96.444 225 7 1 4826 5050 48037967 48038190 2.220000e-98 370.0
22 TraesCS2B01G231700 chrUn 96.833 221 7 0 4830 5050 88102784 88102564 2.220000e-98 370.0
23 TraesCS2B01G231700 chrUn 84.337 83 13 0 1754 1836 210218665 210218583 1.170000e-11 82.4
24 TraesCS2B01G231700 chr7B 96.476 227 6 2 4826 5050 740320433 740320659 1.720000e-99 374.0
25 TraesCS2B01G231700 chr7B 79.245 106 20 2 838 941 539931149 539931254 7.010000e-09 73.1
26 TraesCS2B01G231700 chr4B 96.444 225 7 1 4826 5050 3438645 3438422 2.220000e-98 370.0
27 TraesCS2B01G231700 chr6A 76.677 626 95 27 116 719 573515964 573515368 2.960000e-77 300.0
28 TraesCS2B01G231700 chr7A 81.381 333 47 7 614 941 628701209 628701531 1.800000e-64 257.0
29 TraesCS2B01G231700 chr3A 77.184 206 36 9 741 941 743105938 743105739 5.350000e-20 110.0
30 TraesCS2B01G231700 chr1A 77.184 206 36 9 741 941 556787495 556787296 5.350000e-20 110.0
31 TraesCS2B01G231700 chr5A 74.519 208 45 8 739 942 12018201 12018404 3.240000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G231700 chr2B 228757409 228762458 5049 False 9326.000000 9326 100.0000 1 5050 1 chr2B.!!$F1 5049
1 TraesCS2B01G231700 chr2B 741464408 741465324 916 True 867.000000 867 84.0620 6 944 1 chr2B.!!$R2 938
2 TraesCS2B01G231700 chr3D 601496503 601500458 3955 True 2223.333333 2926 97.2900 954 4832 3 chr3D.!!$R2 3878
3 TraesCS2B01G231700 chr3B 785329371 785330285 914 False 856.000000 856 83.9250 6 941 1 chr3B.!!$F1 935
4 TraesCS2B01G231700 chr6B 71866762 71867809 1047 True 756.000000 756 79.8860 3004 4045 1 chr6B.!!$R1 1041
5 TraesCS2B01G231700 chr6D 54032095 54032973 878 True 478.000000 597 86.5115 6 942 2 chr6D.!!$R4 936
6 TraesCS2B01G231700 chr6A 573515368 573515964 596 True 300.000000 300 76.6770 116 719 1 chr6A.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 1019 0.164647 CTTCGCTGCTCTCGGTTTTG 59.835 55.0 0.00 0.0 0.00 2.44 F
1188 1260 0.529773 GCGACATGAGCATCCCGTTA 60.530 55.0 0.00 0.0 34.19 3.18 F
1940 2015 0.675633 GGCAACAGTTCTTGTGCCAT 59.324 50.0 8.15 0.0 45.44 4.40 F
2197 2272 0.826672 AACAGAGTCCCGAGTTCCGT 60.827 55.0 0.00 0.0 36.31 4.69 F
2566 2641 0.859232 GCCGGGCATAATATATCGCG 59.141 55.0 15.62 0.0 35.17 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2754 2863 0.104120 ACAAAAGCCGGCAGTTTTCC 59.896 50.000 31.54 0.0 0.00 3.13 R
2964 3073 3.963383 AGCTTCAGTTAAACCAACGTG 57.037 42.857 0.00 0.0 42.35 4.49 R
3380 3489 0.181587 TCCCTTTCGCCACAAACTCA 59.818 50.000 0.00 0.0 0.00 3.41 R
3455 3570 1.202452 GCTGACCCAATAGCAATTGCC 60.202 52.381 26.45 9.3 41.06 4.52 R
4449 4606 1.073706 AACTGACAGGTGGGTCCCT 60.074 57.895 10.00 0.0 36.97 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 5.948758 ACCACCACAAAACATTTTTGGAAAT 59.051 32.000 13.38 0.00 35.90 2.17
80 84 4.615588 TTTTTGGAAATGGCAAGGTAGG 57.384 40.909 0.00 0.00 0.00 3.18
139 144 1.596477 GATGCCATCTCCCGTCAGC 60.596 63.158 0.00 0.00 0.00 4.26
170 191 1.614317 GGCATGCTGGTAAGGTGAACT 60.614 52.381 18.92 0.00 0.00 3.01
185 206 6.884280 AGGTGAACTTGAACCTAATTGAAG 57.116 37.500 0.00 0.00 45.15 3.02
230 251 3.845781 ACGAGAATATGCTCCCATGTT 57.154 42.857 5.04 0.00 35.76 2.71
231 252 3.470709 ACGAGAATATGCTCCCATGTTG 58.529 45.455 5.04 0.00 33.59 3.33
232 253 3.134623 ACGAGAATATGCTCCCATGTTGA 59.865 43.478 5.04 0.00 33.59 3.18
233 254 3.496130 CGAGAATATGCTCCCATGTTGAC 59.504 47.826 5.04 0.00 33.59 3.18
234 255 4.454678 GAGAATATGCTCCCATGTTGACA 58.545 43.478 0.00 0.00 33.59 3.58
235 256 4.858850 AGAATATGCTCCCATGTTGACAA 58.141 39.130 0.00 0.00 33.59 3.18
236 257 5.263599 AGAATATGCTCCCATGTTGACAAA 58.736 37.500 0.00 0.00 33.59 2.83
276 297 5.530519 TTCAGATTGCAATCGACACTAAC 57.469 39.130 28.88 7.26 40.35 2.34
277 298 4.820897 TCAGATTGCAATCGACACTAACT 58.179 39.130 28.88 9.60 40.35 2.24
278 299 4.864806 TCAGATTGCAATCGACACTAACTC 59.135 41.667 28.88 6.94 40.35 3.01
279 300 4.627035 CAGATTGCAATCGACACTAACTCA 59.373 41.667 28.88 0.00 40.35 3.41
280 301 4.627467 AGATTGCAATCGACACTAACTCAC 59.373 41.667 28.88 5.47 40.35 3.51
281 302 3.660501 TGCAATCGACACTAACTCACT 57.339 42.857 0.00 0.00 0.00 3.41
282 303 4.776795 TGCAATCGACACTAACTCACTA 57.223 40.909 0.00 0.00 0.00 2.74
283 304 5.128992 TGCAATCGACACTAACTCACTAA 57.871 39.130 0.00 0.00 0.00 2.24
284 305 5.161358 TGCAATCGACACTAACTCACTAAG 58.839 41.667 0.00 0.00 0.00 2.18
312 336 1.340502 TGTGAGAGCGATGAGGAGAGT 60.341 52.381 0.00 0.00 0.00 3.24
324 348 5.505654 CGATGAGGAGAGTAGAAGAGAAAGC 60.506 48.000 0.00 0.00 0.00 3.51
346 371 1.404315 CCTTGTCTGTCGGCTAAGGTC 60.404 57.143 0.00 0.00 34.58 3.85
377 402 0.317160 CTCCATATCCGTTGCCGCTA 59.683 55.000 0.00 0.00 0.00 4.26
396 421 2.430610 GGACGGGCTGCTGAGAGAT 61.431 63.158 0.00 0.00 0.00 2.75
432 457 0.704664 TGGTCTGCTAGAGAGGGACA 59.295 55.000 0.00 0.00 0.00 4.02
438 463 0.463620 GCTAGAGAGGGACAAGGCAG 59.536 60.000 0.00 0.00 0.00 4.85
439 464 1.859302 CTAGAGAGGGACAAGGCAGT 58.141 55.000 0.00 0.00 0.00 4.40
476 501 3.319198 GGGAAGACCTCGGGTGCA 61.319 66.667 0.00 0.00 35.25 4.57
486 517 3.770040 CGGGTGCATCGGTGAGGA 61.770 66.667 0.00 0.00 0.00 3.71
488 519 2.187946 GGTGCATCGGTGAGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
489 520 2.512515 GTGCATCGGTGAGGAGGC 60.513 66.667 0.00 0.00 43.57 4.70
541 580 2.281692 TGAGTCGACGAACCGGGA 60.282 61.111 10.46 0.00 0.00 5.14
582 626 4.695231 ACGCGTCGAGGTTGTCCG 62.695 66.667 5.58 3.91 39.05 4.79
604 648 3.793144 GCGGCGCTCAAACCTCAG 61.793 66.667 26.86 0.00 0.00 3.35
605 649 3.793144 CGGCGCTCAAACCTCAGC 61.793 66.667 7.64 0.00 0.00 4.26
646 705 2.711922 GGATCCAGCACGTCGAGGT 61.712 63.158 6.95 4.63 0.00 3.85
675 737 3.872431 GCCTACGGCCTACTCCAT 58.128 61.111 0.00 0.00 44.06 3.41
686 748 2.169352 GCCTACTCCATCTTCTGCTTCA 59.831 50.000 0.00 0.00 0.00 3.02
763 833 2.892215 TGTACCATCGGAACAGTGTACA 59.108 45.455 0.00 0.00 36.99 2.90
788 858 2.173669 CGTCACGGCATCACCATCC 61.174 63.158 0.00 0.00 39.03 3.51
791 861 1.070758 GTCACGGCATCACCATCCTAT 59.929 52.381 0.00 0.00 39.03 2.57
805 875 0.899720 TCCTATCAAACGGCGGAGTT 59.100 50.000 13.24 0.00 35.59 3.01
809 879 0.392060 ATCAAACGGCGGAGTTACCC 60.392 55.000 13.24 0.00 33.41 3.69
825 895 5.018809 AGTTACCCTATACGACTGTTCCAA 58.981 41.667 0.00 0.00 0.00 3.53
826 896 5.481473 AGTTACCCTATACGACTGTTCCAAA 59.519 40.000 0.00 0.00 0.00 3.28
850 921 2.577757 TACCCTCCCCTGCCCTCTT 61.578 63.158 0.00 0.00 0.00 2.85
861 932 0.811219 TGCCCTCTTCGATCGCATTG 60.811 55.000 11.09 0.66 0.00 2.82
871 942 1.195448 CGATCGCATTGAATACAGGGC 59.805 52.381 0.26 0.00 0.00 5.19
872 943 1.537202 GATCGCATTGAATACAGGGCC 59.463 52.381 0.00 0.00 0.00 5.80
879 950 3.081409 AATACAGGGCCCGACGCT 61.081 61.111 18.44 0.00 43.57 5.07
885 956 3.777910 GGGCCCGACGCTTCCTAA 61.778 66.667 5.69 0.00 37.74 2.69
890 961 1.742750 GCCCGACGCTTCCTAATTCTT 60.743 52.381 0.00 0.00 0.00 2.52
892 963 2.351726 CCCGACGCTTCCTAATTCTTTG 59.648 50.000 0.00 0.00 0.00 2.77
894 965 3.000727 CGACGCTTCCTAATTCTTTGGT 58.999 45.455 0.00 0.00 0.00 3.67
895 966 4.178540 CGACGCTTCCTAATTCTTTGGTA 58.821 43.478 0.00 0.00 0.00 3.25
896 967 4.267928 CGACGCTTCCTAATTCTTTGGTAG 59.732 45.833 0.00 0.00 0.00 3.18
898 969 4.019591 ACGCTTCCTAATTCTTTGGTAGGT 60.020 41.667 0.00 0.00 36.54 3.08
899 970 4.332819 CGCTTCCTAATTCTTTGGTAGGTG 59.667 45.833 0.00 0.00 36.54 4.00
941 1013 1.936880 CGCTACTTCGCTGCTCTCG 60.937 63.158 0.00 0.00 0.00 4.04
944 1016 0.171455 CTACTTCGCTGCTCTCGGTT 59.829 55.000 0.00 0.00 0.00 4.44
945 1017 0.601558 TACTTCGCTGCTCTCGGTTT 59.398 50.000 0.00 0.00 0.00 3.27
946 1018 0.249911 ACTTCGCTGCTCTCGGTTTT 60.250 50.000 0.00 0.00 0.00 2.43
947 1019 0.164647 CTTCGCTGCTCTCGGTTTTG 59.835 55.000 0.00 0.00 0.00 2.44
948 1020 1.841663 TTCGCTGCTCTCGGTTTTGC 61.842 55.000 0.00 0.00 0.00 3.68
949 1021 2.606961 CGCTGCTCTCGGTTTTGCA 61.607 57.895 0.00 0.00 0.00 4.08
950 1022 1.878775 GCTGCTCTCGGTTTTGCAT 59.121 52.632 0.00 0.00 34.79 3.96
951 1023 1.086696 GCTGCTCTCGGTTTTGCATA 58.913 50.000 0.00 0.00 34.79 3.14
952 1024 1.672881 GCTGCTCTCGGTTTTGCATAT 59.327 47.619 0.00 0.00 34.79 1.78
1089 1161 1.160137 GTGATCACTTGACCCTGCAC 58.840 55.000 18.83 0.00 0.00 4.57
1188 1260 0.529773 GCGACATGAGCATCCCGTTA 60.530 55.000 0.00 0.00 34.19 3.18
1254 1326 0.764369 TCACCTGCAACACCTCCTCT 60.764 55.000 0.00 0.00 0.00 3.69
1291 1363 1.741770 CTCGCCTACAACCACAGCC 60.742 63.158 0.00 0.00 0.00 4.85
1306 1378 2.830370 GCCAGCCACCATACCAGC 60.830 66.667 0.00 0.00 0.00 4.85
1307 1379 2.676608 CCAGCCACCATACCAGCA 59.323 61.111 0.00 0.00 0.00 4.41
1308 1380 1.228228 CCAGCCACCATACCAGCAT 59.772 57.895 0.00 0.00 0.00 3.79
1336 1408 3.376234 CCAGTATGCATTCAACACTGAGG 59.624 47.826 22.48 7.95 39.13 3.86
1452 1524 1.440938 CCCGGTGCTTCACAAACGAA 61.441 55.000 0.00 0.00 35.86 3.85
1615 1687 2.064762 CTCTCTCCTGCACTTCAAACG 58.935 52.381 0.00 0.00 0.00 3.60
1616 1688 1.686587 TCTCTCCTGCACTTCAAACGA 59.313 47.619 0.00 0.00 0.00 3.85
1634 1709 0.815615 GATCCCTTCATGTCGGCCAC 60.816 60.000 2.24 0.25 0.00 5.01
1679 1754 2.758089 GCTGTCAGATTGCCCTGCG 61.758 63.158 3.32 0.00 34.28 5.18
1707 1782 2.516227 TCTCGACTCTCCCTGTCATT 57.484 50.000 0.00 0.00 34.37 2.57
1717 1792 0.756903 CCCTGTCATTAGTACCGGGG 59.243 60.000 6.32 0.00 37.64 5.73
1825 1900 1.516423 GAGGAGGACTTGTACGGCC 59.484 63.158 0.00 0.00 0.00 6.13
1940 2015 0.675633 GGCAACAGTTCTTGTGCCAT 59.324 50.000 8.15 0.00 45.44 4.40
2197 2272 0.826672 AACAGAGTCCCGAGTTCCGT 60.827 55.000 0.00 0.00 36.31 4.69
2292 2367 1.371267 GCGACGCCAAAAAGGGAAC 60.371 57.895 9.14 0.00 38.09 3.62
2454 2529 4.023279 TGACAAGATTCCGTTGTTCAATGG 60.023 41.667 15.34 15.34 38.26 3.16
2484 2559 8.621532 AAATATTATAATCTGGTGACGTGCAT 57.378 30.769 0.00 0.00 0.00 3.96
2564 2639 2.365617 AGAGGCCGGGCATAATATATCG 59.634 50.000 31.59 0.00 0.00 2.92
2566 2641 0.859232 GCCGGGCATAATATATCGCG 59.141 55.000 15.62 0.00 35.17 5.87
2650 2759 9.120538 TGGGTTGCTCTTATTGTATCTTAATTC 57.879 33.333 0.00 0.00 0.00 2.17
2945 3054 5.493809 TGTTTAGTTAGGGGTGCTATGTTC 58.506 41.667 0.00 0.00 0.00 3.18
2964 3073 9.483062 CTATGTTCGATTGTCAAAAAGAGATTC 57.517 33.333 0.00 0.00 0.00 2.52
3019 3128 3.914426 ATTCGTAGGTCTTGCTGGATT 57.086 42.857 0.00 0.00 0.00 3.01
3369 3478 1.536284 GCCTAGAGTTCGATGTTCCCG 60.536 57.143 0.00 0.00 0.00 5.14
3380 3489 2.706890 GATGTTCCCGTGTTGGTGTAT 58.293 47.619 0.00 0.00 35.15 2.29
3407 3516 1.534163 GTGGCGAAAGGGAGTTTGTAC 59.466 52.381 0.00 0.00 0.00 2.90
3425 3534 3.994392 TGTACGATGTCCTCTTCAAAAGC 59.006 43.478 0.00 0.00 0.00 3.51
3454 3569 1.577328 ATTCCAGTGAACAAGCGCCG 61.577 55.000 2.29 0.00 32.13 6.46
3455 3570 3.726517 CCAGTGAACAAGCGCCGG 61.727 66.667 2.29 0.00 0.00 6.13
3481 3596 1.020437 GCTATTGGGTCAGCTGAAGC 58.980 55.000 20.19 18.57 42.49 3.86
3639 3754 1.200252 ACGAGGAGACTGATCGTGTTG 59.800 52.381 10.00 0.00 46.99 3.33
3987 4102 3.456644 TGGACAACCCGTATATCATGGTT 59.543 43.478 0.00 0.00 41.65 3.67
4087 4202 7.607250 TCATTTGGTTATGTAATGTGGTTTCC 58.393 34.615 0.00 0.00 32.49 3.13
4090 4205 7.604657 TTGGTTATGTAATGTGGTTTCCTTT 57.395 32.000 0.00 0.00 0.00 3.11
4092 4207 8.024145 TGGTTATGTAATGTGGTTTCCTTTTT 57.976 30.769 0.00 0.00 0.00 1.94
4215 4334 7.184161 AGATACTCAGGATCATCTAGCTCAAT 58.816 38.462 0.00 0.00 0.00 2.57
4237 4356 4.778534 AATTGAGCCACACAAGATCAAG 57.221 40.909 0.00 0.00 33.73 3.02
4388 4545 7.112779 TCAAGTTTTGGTTCTCTCTCTCTTTT 58.887 34.615 0.00 0.00 0.00 2.27
4389 4546 7.281100 TCAAGTTTTGGTTCTCTCTCTCTTTTC 59.719 37.037 0.00 0.00 0.00 2.29
4397 4554 7.039270 GGTTCTCTCTCTCTTTTCTTATCACC 58.961 42.308 0.00 0.00 0.00 4.02
4446 4603 2.287188 GCATATATGTGCACAGTGCCAC 60.287 50.000 25.84 19.31 44.23 5.01
4449 4606 0.396060 TATGTGCACAGTGCCACAGA 59.604 50.000 25.84 19.17 44.23 3.41
4562 4719 3.334881 AGATCAACCCAACATTCTCCCTT 59.665 43.478 0.00 0.00 0.00 3.95
4565 4722 5.068215 TCAACCCAACATTCTCCCTTTTA 57.932 39.130 0.00 0.00 0.00 1.52
4570 4727 4.705023 CCCAACATTCTCCCTTTTAATCGT 59.295 41.667 0.00 0.00 0.00 3.73
4606 4763 2.636830 AGCCCACTTCTCGATGAAATG 58.363 47.619 0.00 0.00 33.79 2.32
4617 4774 4.021981 TCTCGATGAAATGGCATACGAGAT 60.022 41.667 24.50 7.80 42.63 2.75
4648 4805 7.876582 GGATACTGTGGTCAATTATTAGTACCC 59.123 40.741 0.00 0.00 0.00 3.69
4652 4809 7.842743 ACTGTGGTCAATTATTAGTACCCTAGA 59.157 37.037 0.00 0.00 0.00 2.43
4655 4812 7.070322 GTGGTCAATTATTAGTACCCTAGACCA 59.930 40.741 0.00 0.00 46.63 4.02
4661 4818 8.619683 ATTATTAGTACCCTAGACCACAGTTT 57.380 34.615 0.00 0.00 0.00 2.66
4676 4833 6.786122 ACCACAGTTTTACAATATACCACCT 58.214 36.000 0.00 0.00 0.00 4.00
4804 4961 7.442969 ACAGAGACAATAAATTACAACGGTCAA 59.557 33.333 0.00 0.00 0.00 3.18
4805 4962 8.450964 CAGAGACAATAAATTACAACGGTCAAT 58.549 33.333 0.00 0.00 0.00 2.57
4832 4989 7.224522 AGTACCGTTGAACTAATTGACTACT 57.775 36.000 0.00 0.00 0.00 2.57
4833 4990 7.311408 AGTACCGTTGAACTAATTGACTACTC 58.689 38.462 0.00 0.00 0.00 2.59
4834 4991 5.476614 ACCGTTGAACTAATTGACTACTCC 58.523 41.667 0.00 0.00 0.00 3.85
4835 4992 4.868734 CCGTTGAACTAATTGACTACTCCC 59.131 45.833 0.00 0.00 0.00 4.30
4836 4993 5.337330 CCGTTGAACTAATTGACTACTCCCT 60.337 44.000 0.00 0.00 0.00 4.20
4837 4994 5.805994 CGTTGAACTAATTGACTACTCCCTC 59.194 44.000 0.00 0.00 0.00 4.30
4838 4995 5.934402 TGAACTAATTGACTACTCCCTCC 57.066 43.478 0.00 0.00 0.00 4.30
4839 4996 4.401519 TGAACTAATTGACTACTCCCTCCG 59.598 45.833 0.00 0.00 0.00 4.63
4840 4997 3.978610 ACTAATTGACTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
4841 4998 3.952967 ACTAATTGACTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
4842 4999 2.526888 ATTGACTACTCCCTCCGTCA 57.473 50.000 0.00 0.00 34.85 4.35
4843 5000 1.542492 TTGACTACTCCCTCCGTCAC 58.458 55.000 0.00 0.00 36.25 3.67
4844 5001 0.675837 TGACTACTCCCTCCGTCACG 60.676 60.000 0.00 0.00 32.00 4.35
4855 5012 2.452767 CCGTCACGGTTTAGAAGGC 58.547 57.895 8.54 0.00 42.73 4.35
4856 5013 0.320073 CCGTCACGGTTTAGAAGGCA 60.320 55.000 8.54 0.00 42.73 4.75
4857 5014 0.788391 CGTCACGGTTTAGAAGGCAC 59.212 55.000 0.00 0.00 0.00 5.01
4858 5015 1.870580 CGTCACGGTTTAGAAGGCACA 60.871 52.381 0.00 0.00 0.00 4.57
4859 5016 1.798813 GTCACGGTTTAGAAGGCACAG 59.201 52.381 0.00 0.00 0.00 3.66
4860 5017 1.414919 TCACGGTTTAGAAGGCACAGT 59.585 47.619 0.00 0.00 0.00 3.55
4861 5018 2.158871 TCACGGTTTAGAAGGCACAGTT 60.159 45.455 0.00 0.00 0.00 3.16
4862 5019 3.069872 TCACGGTTTAGAAGGCACAGTTA 59.930 43.478 0.00 0.00 0.00 2.24
4863 5020 3.810941 CACGGTTTAGAAGGCACAGTTAA 59.189 43.478 0.00 0.00 0.00 2.01
4864 5021 4.273969 CACGGTTTAGAAGGCACAGTTAAA 59.726 41.667 0.00 0.00 0.00 1.52
4865 5022 5.048991 CACGGTTTAGAAGGCACAGTTAAAT 60.049 40.000 0.00 0.00 0.00 1.40
4866 5023 5.533528 ACGGTTTAGAAGGCACAGTTAAATT 59.466 36.000 0.00 0.00 0.00 1.82
4867 5024 6.040054 ACGGTTTAGAAGGCACAGTTAAATTT 59.960 34.615 0.00 0.00 0.00 1.82
4868 5025 6.362283 CGGTTTAGAAGGCACAGTTAAATTTG 59.638 38.462 0.00 0.00 0.00 2.32
4869 5026 6.145534 GGTTTAGAAGGCACAGTTAAATTTGC 59.854 38.462 5.51 5.51 0.00 3.68
4870 5027 3.900941 AGAAGGCACAGTTAAATTTGCG 58.099 40.909 7.84 0.00 35.74 4.85
4871 5028 3.317993 AGAAGGCACAGTTAAATTTGCGT 59.682 39.130 7.84 5.77 35.74 5.24
4872 5029 3.011949 AGGCACAGTTAAATTTGCGTG 57.988 42.857 8.27 4.14 35.74 5.34
4873 5030 1.455408 GGCACAGTTAAATTTGCGTGC 59.545 47.619 19.42 19.42 46.85 5.34
4874 5031 1.122323 GCACAGTTAAATTTGCGTGCG 59.878 47.619 15.51 1.61 40.16 5.34
4875 5032 2.380660 CACAGTTAAATTTGCGTGCGT 58.619 42.857 0.00 0.00 0.00 5.24
4876 5033 2.786578 CACAGTTAAATTTGCGTGCGTT 59.213 40.909 0.00 0.00 0.00 4.84
4877 5034 3.241784 CACAGTTAAATTTGCGTGCGTTT 59.758 39.130 0.00 0.00 0.00 3.60
4878 5035 3.860536 ACAGTTAAATTTGCGTGCGTTTT 59.139 34.783 0.00 0.00 0.00 2.43
4879 5036 4.027214 ACAGTTAAATTTGCGTGCGTTTTC 60.027 37.500 0.00 0.00 0.00 2.29
4880 5037 4.027295 CAGTTAAATTTGCGTGCGTTTTCA 60.027 37.500 0.00 0.00 0.00 2.69
4881 5038 2.988807 AAATTTGCGTGCGTTTTCAC 57.011 40.000 0.00 0.00 0.00 3.18
4882 5039 1.914634 AATTTGCGTGCGTTTTCACA 58.085 40.000 0.00 0.00 36.80 3.58
4883 5040 1.914634 ATTTGCGTGCGTTTTCACAA 58.085 40.000 0.00 0.00 36.80 3.33
4884 5041 1.914634 TTTGCGTGCGTTTTCACAAT 58.085 40.000 0.00 0.00 36.80 2.71
4885 5042 2.757686 TTGCGTGCGTTTTCACAATA 57.242 40.000 0.00 0.00 36.80 1.90
4886 5043 2.308347 TGCGTGCGTTTTCACAATAG 57.692 45.000 0.00 0.00 36.80 1.73
4887 5044 1.867865 TGCGTGCGTTTTCACAATAGA 59.132 42.857 0.00 0.00 36.80 1.98
4888 5045 2.230864 GCGTGCGTTTTCACAATAGAC 58.769 47.619 0.00 0.00 36.80 2.59
4889 5046 2.349060 GCGTGCGTTTTCACAATAGACA 60.349 45.455 0.00 0.00 36.80 3.41
4890 5047 3.846744 GCGTGCGTTTTCACAATAGACAA 60.847 43.478 0.00 0.00 36.80 3.18
4891 5048 3.900116 CGTGCGTTTTCACAATAGACAAG 59.100 43.478 0.00 0.00 36.80 3.16
4892 5049 4.219033 GTGCGTTTTCACAATAGACAAGG 58.781 43.478 0.00 0.00 36.97 3.61
4893 5050 3.880490 TGCGTTTTCACAATAGACAAGGT 59.120 39.130 0.00 0.00 0.00 3.50
4894 5051 4.336993 TGCGTTTTCACAATAGACAAGGTT 59.663 37.500 0.00 0.00 0.00 3.50
4895 5052 5.163602 TGCGTTTTCACAATAGACAAGGTTT 60.164 36.000 0.00 0.00 0.00 3.27
4896 5053 6.038382 TGCGTTTTCACAATAGACAAGGTTTA 59.962 34.615 0.00 0.00 0.00 2.01
4897 5054 6.577427 GCGTTTTCACAATAGACAAGGTTTAG 59.423 38.462 0.00 0.00 0.00 1.85
4898 5055 7.075741 CGTTTTCACAATAGACAAGGTTTAGG 58.924 38.462 0.00 0.00 0.00 2.69
4899 5056 7.368059 GTTTTCACAATAGACAAGGTTTAGGG 58.632 38.462 0.00 0.00 0.00 3.53
4900 5057 4.585879 TCACAATAGACAAGGTTTAGGGC 58.414 43.478 0.00 0.00 0.00 5.19
4901 5058 3.374058 CACAATAGACAAGGTTTAGGGCG 59.626 47.826 0.00 0.00 0.00 6.13
4902 5059 2.327200 ATAGACAAGGTTTAGGGCGC 57.673 50.000 0.00 0.00 0.00 6.53
4903 5060 0.978151 TAGACAAGGTTTAGGGCGCA 59.022 50.000 10.83 0.00 0.00 6.09
4904 5061 0.328258 AGACAAGGTTTAGGGCGCAT 59.672 50.000 10.83 0.00 0.00 4.73
4905 5062 1.173913 GACAAGGTTTAGGGCGCATT 58.826 50.000 10.83 0.00 0.00 3.56
4906 5063 0.887933 ACAAGGTTTAGGGCGCATTG 59.112 50.000 10.83 3.20 0.00 2.82
4907 5064 0.458370 CAAGGTTTAGGGCGCATTGC 60.458 55.000 10.83 0.00 45.38 3.56
4922 5079 6.901699 GCGCATTGCATTTATTTCTAGTAG 57.098 37.500 9.69 0.00 45.45 2.57
4923 5080 5.340667 GCGCATTGCATTTATTTCTAGTAGC 59.659 40.000 9.69 0.00 45.45 3.58
4924 5081 6.662616 CGCATTGCATTTATTTCTAGTAGCT 58.337 36.000 9.69 0.00 0.00 3.32
4925 5082 7.571244 GCGCATTGCATTTATTTCTAGTAGCTA 60.571 37.037 9.69 0.00 45.45 3.32
4926 5083 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
4938 5095 7.976135 TTCTAGTAGCTAATTAGTACTCCGG 57.024 40.000 21.10 0.00 0.00 5.14
4939 5096 7.308450 TCTAGTAGCTAATTAGTACTCCGGA 57.692 40.000 21.10 2.93 0.00 5.14
4940 5097 7.385267 TCTAGTAGCTAATTAGTACTCCGGAG 58.615 42.308 30.11 30.11 0.00 4.63
4941 5098 5.939447 AGTAGCTAATTAGTACTCCGGAGT 58.061 41.667 37.59 37.59 45.02 3.85
4942 5099 7.072263 AGTAGCTAATTAGTACTCCGGAGTA 57.928 40.000 35.34 35.34 42.54 2.59
4956 5113 7.393841 ACTCCGGAGTACTATTTCTATATGC 57.606 40.000 35.59 0.00 40.43 3.14
4957 5114 6.946583 ACTCCGGAGTACTATTTCTATATGCA 59.053 38.462 35.59 0.00 40.43 3.96
4958 5115 7.616150 ACTCCGGAGTACTATTTCTATATGCAT 59.384 37.037 35.59 3.79 40.43 3.96
4959 5116 7.772166 TCCGGAGTACTATTTCTATATGCATG 58.228 38.462 10.16 0.00 0.00 4.06
4960 5117 6.477033 CCGGAGTACTATTTCTATATGCATGC 59.523 42.308 11.82 11.82 0.00 4.06
4961 5118 6.197282 CGGAGTACTATTTCTATATGCATGCG 59.803 42.308 14.09 0.00 0.00 4.73
4962 5119 7.036220 GGAGTACTATTTCTATATGCATGCGT 58.964 38.462 18.07 18.07 0.00 5.24
4963 5120 8.188799 GGAGTACTATTTCTATATGCATGCGTA 58.811 37.037 21.43 21.43 0.00 4.42
4964 5121 9.227490 GAGTACTATTTCTATATGCATGCGTAG 57.773 37.037 23.20 18.59 0.00 3.51
4965 5122 8.740906 AGTACTATTTCTATATGCATGCGTAGT 58.259 33.333 23.20 16.83 0.00 2.73
4966 5123 7.818493 ACTATTTCTATATGCATGCGTAGTG 57.182 36.000 23.20 17.51 0.00 2.74
4967 5124 7.378966 ACTATTTCTATATGCATGCGTAGTGT 58.621 34.615 23.20 10.69 0.00 3.55
4968 5125 5.905480 TTTCTATATGCATGCGTAGTGTG 57.095 39.130 23.20 13.27 0.00 3.82
4969 5126 4.846779 TCTATATGCATGCGTAGTGTGA 57.153 40.909 23.20 15.02 0.00 3.58
4970 5127 5.195001 TCTATATGCATGCGTAGTGTGAA 57.805 39.130 23.20 2.26 0.00 3.18
4971 5128 5.783111 TCTATATGCATGCGTAGTGTGAAT 58.217 37.500 23.20 9.61 0.00 2.57
4972 5129 4.737353 ATATGCATGCGTAGTGTGAATG 57.263 40.909 23.20 0.00 0.00 2.67
4973 5130 0.447406 TGCATGCGTAGTGTGAATGC 59.553 50.000 14.09 0.00 43.08 3.56
4974 5131 0.729116 GCATGCGTAGTGTGAATGCT 59.271 50.000 0.00 0.00 40.34 3.79
4975 5132 1.933181 GCATGCGTAGTGTGAATGCTA 59.067 47.619 0.00 0.00 40.34 3.49
4976 5133 2.545526 GCATGCGTAGTGTGAATGCTAT 59.454 45.455 0.00 0.00 40.34 2.97
4977 5134 3.002656 GCATGCGTAGTGTGAATGCTATT 59.997 43.478 0.00 0.00 40.34 1.73
4978 5135 4.496341 GCATGCGTAGTGTGAATGCTATTT 60.496 41.667 0.00 0.00 40.34 1.40
4979 5136 5.572211 CATGCGTAGTGTGAATGCTATTTT 58.428 37.500 0.00 0.00 0.00 1.82
4980 5137 5.621197 TGCGTAGTGTGAATGCTATTTTT 57.379 34.783 0.00 0.00 0.00 1.94
4998 5155 3.517296 TTTTAGCCCATCTCACAACCA 57.483 42.857 0.00 0.00 0.00 3.67
4999 5156 3.517296 TTTAGCCCATCTCACAACCAA 57.483 42.857 0.00 0.00 0.00 3.67
5000 5157 3.737559 TTAGCCCATCTCACAACCAAT 57.262 42.857 0.00 0.00 0.00 3.16
5001 5158 4.853468 TTAGCCCATCTCACAACCAATA 57.147 40.909 0.00 0.00 0.00 1.90
5002 5159 3.287867 AGCCCATCTCACAACCAATAG 57.712 47.619 0.00 0.00 0.00 1.73
5003 5160 2.846206 AGCCCATCTCACAACCAATAGA 59.154 45.455 0.00 0.00 0.00 1.98
5004 5161 3.461085 AGCCCATCTCACAACCAATAGAT 59.539 43.478 0.00 0.00 0.00 1.98
5005 5162 4.660303 AGCCCATCTCACAACCAATAGATA 59.340 41.667 0.00 0.00 0.00 1.98
5006 5163 5.132648 AGCCCATCTCACAACCAATAGATAA 59.867 40.000 0.00 0.00 0.00 1.75
5007 5164 5.239525 GCCCATCTCACAACCAATAGATAAC 59.760 44.000 0.00 0.00 0.00 1.89
5008 5165 5.765182 CCCATCTCACAACCAATAGATAACC 59.235 44.000 0.00 0.00 0.00 2.85
5009 5166 6.356556 CCATCTCACAACCAATAGATAACCA 58.643 40.000 0.00 0.00 0.00 3.67
5010 5167 6.260936 CCATCTCACAACCAATAGATAACCAC 59.739 42.308 0.00 0.00 0.00 4.16
5011 5168 5.741011 TCTCACAACCAATAGATAACCACC 58.259 41.667 0.00 0.00 0.00 4.61
5012 5169 5.487488 TCTCACAACCAATAGATAACCACCT 59.513 40.000 0.00 0.00 0.00 4.00
5013 5170 6.670464 TCTCACAACCAATAGATAACCACCTA 59.330 38.462 0.00 0.00 0.00 3.08
5014 5171 6.884832 TCACAACCAATAGATAACCACCTAG 58.115 40.000 0.00 0.00 0.00 3.02
5015 5172 6.055588 CACAACCAATAGATAACCACCTAGG 58.944 44.000 7.41 7.41 45.67 3.02
5025 5182 3.711849 CCACCTAGGTCCCAGAGAA 57.288 57.895 12.84 0.00 0.00 2.87
5026 5183 2.182516 CCACCTAGGTCCCAGAGAAT 57.817 55.000 12.84 0.00 0.00 2.40
5027 5184 2.482494 CCACCTAGGTCCCAGAGAATT 58.518 52.381 12.84 0.00 0.00 2.17
5028 5185 2.846827 CCACCTAGGTCCCAGAGAATTT 59.153 50.000 12.84 0.00 0.00 1.82
5029 5186 3.267031 CCACCTAGGTCCCAGAGAATTTT 59.733 47.826 12.84 0.00 0.00 1.82
5030 5187 4.518249 CACCTAGGTCCCAGAGAATTTTC 58.482 47.826 12.84 0.00 0.00 2.29
5031 5188 4.019321 CACCTAGGTCCCAGAGAATTTTCA 60.019 45.833 12.84 0.00 0.00 2.69
5032 5189 4.601857 ACCTAGGTCCCAGAGAATTTTCAA 59.398 41.667 9.21 0.00 0.00 2.69
5033 5190 5.189180 CCTAGGTCCCAGAGAATTTTCAAG 58.811 45.833 0.00 0.00 0.00 3.02
5034 5191 3.425659 AGGTCCCAGAGAATTTTCAAGC 58.574 45.455 0.00 0.00 0.00 4.01
5035 5192 2.162408 GGTCCCAGAGAATTTTCAAGCG 59.838 50.000 0.00 0.00 0.00 4.68
5036 5193 1.812571 TCCCAGAGAATTTTCAAGCGC 59.187 47.619 0.00 0.00 0.00 5.92
5037 5194 1.466360 CCCAGAGAATTTTCAAGCGCG 60.466 52.381 0.00 0.00 0.00 6.86
5038 5195 1.253999 CAGAGAATTTTCAAGCGCGC 58.746 50.000 26.66 26.66 0.00 6.86
5039 5196 0.169009 AGAGAATTTTCAAGCGCGCC 59.831 50.000 30.33 10.31 0.00 6.53
5040 5197 0.169009 GAGAATTTTCAAGCGCGCCT 59.831 50.000 30.33 13.59 0.00 5.52
5041 5198 0.598065 AGAATTTTCAAGCGCGCCTT 59.402 45.000 30.33 18.49 0.00 4.35
5042 5199 0.984829 GAATTTTCAAGCGCGCCTTC 59.015 50.000 30.33 14.83 0.00 3.46
5043 5200 0.598065 AATTTTCAAGCGCGCCTTCT 59.402 45.000 30.33 5.98 0.00 2.85
5044 5201 1.448985 ATTTTCAAGCGCGCCTTCTA 58.551 45.000 30.33 9.84 0.00 2.10
5045 5202 1.231221 TTTTCAAGCGCGCCTTCTAA 58.769 45.000 30.33 14.41 0.00 2.10
5046 5203 1.231221 TTTCAAGCGCGCCTTCTAAA 58.769 45.000 30.33 17.92 0.00 1.85
5047 5204 0.515564 TTCAAGCGCGCCTTCTAAAC 59.484 50.000 30.33 0.00 0.00 2.01
5048 5205 1.134694 CAAGCGCGCCTTCTAAACC 59.865 57.895 30.33 0.00 0.00 3.27
5049 5206 2.388232 AAGCGCGCCTTCTAAACCG 61.388 57.895 30.33 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 5.888105 TGCCATTTCCAAAAATGTTTTGTG 58.112 33.333 11.39 4.47 46.87 3.33
69 71 1.274167 CGTTCTGTACCTACCTTGCCA 59.726 52.381 0.00 0.00 0.00 4.92
70 72 1.405121 CCGTTCTGTACCTACCTTGCC 60.405 57.143 0.00 0.00 0.00 4.52
80 84 1.468520 TGCTACCGTACCGTTCTGTAC 59.531 52.381 0.00 0.00 38.16 2.90
100 104 8.908903 GGCATCTGAAGCATAGTAGTACTATAT 58.091 37.037 20.06 10.85 39.26 0.86
170 191 5.935945 TCAGTCCACTTCAATTAGGTTCAA 58.064 37.500 0.00 0.00 0.00 2.69
185 206 4.158025 TCTCTCGATTTAGGTTCAGTCCAC 59.842 45.833 0.00 0.00 0.00 4.02
230 251 3.188254 CGTGGTAGCATTGTCATTTGTCA 59.812 43.478 0.00 0.00 0.00 3.58
231 252 3.747193 CGTGGTAGCATTGTCATTTGTC 58.253 45.455 0.00 0.00 0.00 3.18
232 253 2.095263 GCGTGGTAGCATTGTCATTTGT 60.095 45.455 0.00 0.00 37.05 2.83
233 254 2.162208 AGCGTGGTAGCATTGTCATTTG 59.838 45.455 0.00 0.00 40.15 2.32
234 255 2.436417 AGCGTGGTAGCATTGTCATTT 58.564 42.857 0.00 0.00 40.15 2.32
235 256 2.113860 AGCGTGGTAGCATTGTCATT 57.886 45.000 0.00 0.00 40.15 2.57
236 257 2.009774 GAAGCGTGGTAGCATTGTCAT 58.990 47.619 0.00 0.00 40.15 3.06
277 298 5.578336 CGCTCTCACATCATTTTCTTAGTGA 59.422 40.000 0.00 0.00 35.07 3.41
278 299 5.578336 TCGCTCTCACATCATTTTCTTAGTG 59.422 40.000 0.00 0.00 0.00 2.74
279 300 5.724328 TCGCTCTCACATCATTTTCTTAGT 58.276 37.500 0.00 0.00 0.00 2.24
280 301 6.478016 TCATCGCTCTCACATCATTTTCTTAG 59.522 38.462 0.00 0.00 0.00 2.18
281 302 6.340522 TCATCGCTCTCACATCATTTTCTTA 58.659 36.000 0.00 0.00 0.00 2.10
282 303 5.181009 TCATCGCTCTCACATCATTTTCTT 58.819 37.500 0.00 0.00 0.00 2.52
283 304 4.763073 TCATCGCTCTCACATCATTTTCT 58.237 39.130 0.00 0.00 0.00 2.52
284 305 4.025061 CCTCATCGCTCTCACATCATTTTC 60.025 45.833 0.00 0.00 0.00 2.29
312 336 4.345257 ACAGACAAGGTGCTTTCTCTTCTA 59.655 41.667 0.00 0.00 0.00 2.10
324 348 1.673033 CCTTAGCCGACAGACAAGGTG 60.673 57.143 0.00 0.00 32.73 4.00
377 402 2.870035 ATCTCTCAGCAGCCCGTCCT 62.870 60.000 0.00 0.00 0.00 3.85
414 439 1.754226 CTTGTCCCTCTCTAGCAGACC 59.246 57.143 0.00 0.00 0.00 3.85
416 441 1.962402 GCCTTGTCCCTCTCTAGCAGA 60.962 57.143 0.00 0.00 0.00 4.26
438 463 2.202987 CCTCATCTGGCTCGGCAC 60.203 66.667 0.00 0.00 0.00 5.01
439 464 2.685017 ACCTCATCTGGCTCGGCA 60.685 61.111 0.00 0.00 0.00 5.69
448 473 2.903404 GTCTTCCCCGACCTCATCT 58.097 57.895 0.00 0.00 0.00 2.90
473 498 3.002583 TGCCTCCTCACCGATGCA 61.003 61.111 0.00 0.00 31.94 3.96
476 501 2.430610 GCTCTGCCTCCTCACCGAT 61.431 63.158 0.00 0.00 0.00 4.18
488 519 2.107953 GAGATGGACCGGCTCTGC 59.892 66.667 0.00 0.00 0.00 4.26
489 520 2.415010 CGAGATGGACCGGCTCTG 59.585 66.667 0.00 0.00 0.00 3.35
490 521 2.835431 CCGAGATGGACCGGCTCT 60.835 66.667 0.00 0.00 42.00 4.09
501 532 3.461773 CGCCCTCCACACCGAGAT 61.462 66.667 0.00 0.00 30.97 2.75
545 584 0.109342 GGATGAAGCACCCGGATGAT 59.891 55.000 0.00 0.00 0.00 2.45
626 685 3.758088 CTCGACGTGCTGGATCCCG 62.758 68.421 9.90 7.99 0.00 5.14
664 726 1.127343 AGCAGAAGATGGAGTAGGCC 58.873 55.000 0.00 0.00 0.00 5.19
665 727 2.169352 TGAAGCAGAAGATGGAGTAGGC 59.831 50.000 0.00 0.00 0.00 3.93
666 728 3.431486 GGTGAAGCAGAAGATGGAGTAGG 60.431 52.174 0.00 0.00 0.00 3.18
667 729 3.431486 GGGTGAAGCAGAAGATGGAGTAG 60.431 52.174 0.00 0.00 0.00 2.57
668 730 2.501723 GGGTGAAGCAGAAGATGGAGTA 59.498 50.000 0.00 0.00 0.00 2.59
669 731 1.280421 GGGTGAAGCAGAAGATGGAGT 59.720 52.381 0.00 0.00 0.00 3.85
670 732 1.741732 CGGGTGAAGCAGAAGATGGAG 60.742 57.143 0.00 0.00 0.00 3.86
671 733 0.250234 CGGGTGAAGCAGAAGATGGA 59.750 55.000 0.00 0.00 0.00 3.41
672 734 1.372087 GCGGGTGAAGCAGAAGATGG 61.372 60.000 0.00 0.00 34.19 3.51
673 735 0.392193 AGCGGGTGAAGCAGAAGATG 60.392 55.000 0.00 0.00 37.01 2.90
674 736 0.326264 AAGCGGGTGAAGCAGAAGAT 59.674 50.000 0.00 0.00 37.01 2.40
675 737 0.108585 AAAGCGGGTGAAGCAGAAGA 59.891 50.000 0.00 0.00 37.01 2.87
783 853 0.105964 TCCGCCGTTTGATAGGATGG 59.894 55.000 0.00 0.00 0.00 3.51
788 858 2.199236 GGTAACTCCGCCGTTTGATAG 58.801 52.381 0.00 0.00 0.00 2.08
791 861 1.004679 GGGTAACTCCGCCGTTTGA 60.005 57.895 0.00 0.00 37.00 2.69
805 875 5.018809 AGTTTGGAACAGTCGTATAGGGTA 58.981 41.667 0.00 0.00 42.39 3.69
809 879 5.634896 ACGTAGTTTGGAACAGTCGTATAG 58.365 41.667 0.00 0.00 37.78 1.31
825 895 0.974525 GCAGGGGAGGGTACGTAGTT 60.975 60.000 0.00 0.00 37.78 2.24
850 921 2.754472 CCCTGTATTCAATGCGATCGA 58.246 47.619 21.57 4.34 0.00 3.59
861 932 2.588034 GCGTCGGGCCCTGTATTC 60.588 66.667 22.43 0.00 34.80 1.75
871 942 2.311124 AAGAATTAGGAAGCGTCGGG 57.689 50.000 0.00 0.00 0.00 5.14
872 943 2.351726 CCAAAGAATTAGGAAGCGTCGG 59.648 50.000 0.00 0.00 0.00 4.79
879 950 6.412214 GCTACACCTACCAAAGAATTAGGAA 58.588 40.000 0.87 0.00 36.60 3.36
885 956 2.093128 CCCGCTACACCTACCAAAGAAT 60.093 50.000 0.00 0.00 0.00 2.40
890 961 1.610554 GCTCCCGCTACACCTACCAA 61.611 60.000 0.00 0.00 0.00 3.67
892 963 2.017559 CTGCTCCCGCTACACCTACC 62.018 65.000 0.00 0.00 36.97 3.18
894 965 1.756950 CCTGCTCCCGCTACACCTA 60.757 63.158 0.00 0.00 36.97 3.08
895 966 3.077556 CCTGCTCCCGCTACACCT 61.078 66.667 0.00 0.00 36.97 4.00
896 967 4.840005 GCCTGCTCCCGCTACACC 62.840 72.222 0.00 0.00 36.97 4.16
899 970 4.577246 CTCGCCTGCTCCCGCTAC 62.577 72.222 0.00 0.00 36.97 3.58
1114 1186 2.509336 CTGCGGTCGGCCTTGTAG 60.509 66.667 3.66 0.00 42.61 2.74
1291 1363 2.574006 ATATGCTGGTATGGTGGCTG 57.426 50.000 0.00 0.00 0.00 4.85
1306 1378 8.623903 AGTGTTGAATGCATACTGGTAAATATG 58.376 33.333 0.00 0.00 32.83 1.78
1307 1379 8.623903 CAGTGTTGAATGCATACTGGTAAATAT 58.376 33.333 15.80 0.00 36.62 1.28
1308 1380 7.826744 TCAGTGTTGAATGCATACTGGTAAATA 59.173 33.333 20.94 3.83 38.79 1.40
1327 1399 1.151899 TAGCCCCACCCTCAGTGTT 60.152 57.895 0.00 0.00 45.74 3.32
1427 1499 0.893270 TGTGAAGCACCGGGAATTGG 60.893 55.000 6.32 0.00 32.73 3.16
1452 1524 0.107848 CCTTGTCTAAACCCGCGGAT 60.108 55.000 30.73 6.36 0.00 4.18
1592 1664 0.178921 TGAAGTGCAGGAGAGAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
1615 1687 0.815615 GTGGCCGACATGAAGGGATC 60.816 60.000 0.00 0.00 0.00 3.36
1616 1688 1.224592 GTGGCCGACATGAAGGGAT 59.775 57.895 0.00 0.00 0.00 3.85
1634 1709 2.503061 CCGAGCACTCCCCATCTG 59.497 66.667 0.00 0.00 0.00 2.90
1679 1754 2.026879 GAGTCGAGATCTGCGGCC 59.973 66.667 0.00 0.00 33.05 6.13
1689 1764 3.283751 ACTAATGACAGGGAGAGTCGAG 58.716 50.000 0.00 0.00 38.83 4.04
1690 1765 3.367646 ACTAATGACAGGGAGAGTCGA 57.632 47.619 0.00 0.00 38.83 4.20
1707 1782 2.832643 TCAAGATCACCCCGGTACTA 57.167 50.000 0.00 0.00 0.00 1.82
1825 1900 3.106672 GTTTCGTAGATAGCACCTCGTG 58.893 50.000 0.00 0.00 35.04 4.35
2227 2302 3.833070 AGTCATATCCTCCGGGTATGTTC 59.167 47.826 11.73 7.60 33.00 3.18
2292 2367 0.735978 GGGAAAAATTTCGGCGCAGG 60.736 55.000 10.83 0.00 38.06 4.85
2410 2485 7.250569 TGTCAAACACATCACTTTTCTTCTTC 58.749 34.615 0.00 0.00 0.00 2.87
2484 2559 9.787435 ACTAGTATGGTTTATTTTCAGTCAACA 57.213 29.630 0.00 0.00 0.00 3.33
2564 2639 4.561606 TCAAGCTCGAGTTTTCTAATACGC 59.438 41.667 12.23 0.00 0.00 4.42
2566 2641 6.946229 TGTCAAGCTCGAGTTTTCTAATAC 57.054 37.500 12.23 4.97 0.00 1.89
2754 2863 0.104120 ACAAAAGCCGGCAGTTTTCC 59.896 50.000 31.54 0.00 0.00 3.13
2945 3054 5.679906 ACGTGAATCTCTTTTTGACAATCG 58.320 37.500 0.00 0.00 0.00 3.34
2964 3073 3.963383 AGCTTCAGTTAAACCAACGTG 57.037 42.857 0.00 0.00 42.35 4.49
3019 3128 7.041635 ACAATGATGACAAAGACAACAATCA 57.958 32.000 0.00 0.00 0.00 2.57
3369 3478 3.550030 GCCACAAACTCATACACCAACAC 60.550 47.826 0.00 0.00 0.00 3.32
3380 3489 0.181587 TCCCTTTCGCCACAAACTCA 59.818 50.000 0.00 0.00 0.00 3.41
3407 3516 3.120060 CCTTGCTTTTGAAGAGGACATCG 60.120 47.826 0.00 0.00 0.00 3.84
3425 3534 4.264253 TGTTCACTGGAATGCTATCCTTG 58.736 43.478 9.34 6.94 40.35 3.61
3454 3569 1.410153 CTGACCCAATAGCAATTGCCC 59.590 52.381 26.45 0.41 41.06 5.36
3455 3570 1.202452 GCTGACCCAATAGCAATTGCC 60.202 52.381 26.45 9.30 41.06 4.52
3481 3596 3.055819 AGCCGAGTGCATATATGTTAGGG 60.056 47.826 14.14 10.13 44.83 3.53
3639 3754 5.353394 TCTATGTAACTCATGTCCCCAAC 57.647 43.478 0.00 0.00 37.91 3.77
3680 3795 3.188460 CACTCTTTTGTGTAATGACCCCG 59.812 47.826 0.00 0.00 33.61 5.73
4215 4334 4.156556 GCTTGATCTTGTGTGGCTCAATTA 59.843 41.667 0.00 0.00 0.00 1.40
4237 4356 7.333528 TGATTCCACTAATTTTGAGGTATGC 57.666 36.000 0.00 0.00 0.00 3.14
4388 4545 5.197451 GTCTCTCTCTGGAAGGTGATAAGA 58.803 45.833 0.00 0.00 0.00 2.10
4389 4546 4.952957 TGTCTCTCTCTGGAAGGTGATAAG 59.047 45.833 0.00 0.00 0.00 1.73
4397 4554 1.190643 GGGGTGTCTCTCTCTGGAAG 58.809 60.000 0.00 0.00 0.00 3.46
4446 4603 1.536418 TGACAGGTGGGTCCCTCTG 60.536 63.158 22.34 22.34 36.97 3.35
4449 4606 1.073706 AACTGACAGGTGGGTCCCT 60.074 57.895 10.00 0.00 36.97 4.20
4606 4763 6.366332 CACAGTATCCTTTTATCTCGTATGCC 59.634 42.308 0.00 0.00 0.00 4.40
4628 4785 7.070322 GGTCTAGGGTACTAATAATTGACCACA 59.930 40.741 0.00 0.00 37.18 4.17
4648 4805 9.095065 GTGGTATATTGTAAAACTGTGGTCTAG 57.905 37.037 0.00 0.00 0.00 2.43
4652 4809 6.786122 AGGTGGTATATTGTAAAACTGTGGT 58.214 36.000 0.00 0.00 0.00 4.16
4655 4812 8.548877 AGATGAGGTGGTATATTGTAAAACTGT 58.451 33.333 0.00 0.00 0.00 3.55
4676 4833 4.651778 ACGGAAGTTCCATTTTGAGATGA 58.348 39.130 21.76 0.00 46.40 2.92
4805 4962 9.410556 GTAGTCAATTAGTTCAACGGTACTTAA 57.589 33.333 0.00 0.00 0.00 1.85
4814 4971 6.107343 GGAGGGAGTAGTCAATTAGTTCAAC 58.893 44.000 0.00 0.00 0.00 3.18
4838 4995 0.788391 GTGCCTTCTAAACCGTGACG 59.212 55.000 0.00 0.00 0.00 4.35
4839 4996 1.798813 CTGTGCCTTCTAAACCGTGAC 59.201 52.381 0.00 0.00 0.00 3.67
4840 4997 1.414919 ACTGTGCCTTCTAAACCGTGA 59.585 47.619 0.00 0.00 0.00 4.35
4841 4998 1.878953 ACTGTGCCTTCTAAACCGTG 58.121 50.000 0.00 0.00 0.00 4.94
4842 4999 2.632987 AACTGTGCCTTCTAAACCGT 57.367 45.000 0.00 0.00 0.00 4.83
4843 5000 5.622770 ATTTAACTGTGCCTTCTAAACCG 57.377 39.130 0.00 0.00 0.00 4.44
4844 5001 6.145534 GCAAATTTAACTGTGCCTTCTAAACC 59.854 38.462 0.00 0.00 0.00 3.27
4845 5002 6.129194 CGCAAATTTAACTGTGCCTTCTAAAC 60.129 38.462 2.62 0.00 33.33 2.01
4846 5003 5.918011 CGCAAATTTAACTGTGCCTTCTAAA 59.082 36.000 2.62 0.00 33.33 1.85
4847 5004 5.009210 ACGCAAATTTAACTGTGCCTTCTAA 59.991 36.000 2.62 0.00 33.33 2.10
4848 5005 4.517453 ACGCAAATTTAACTGTGCCTTCTA 59.483 37.500 2.62 0.00 33.33 2.10
4849 5006 3.317993 ACGCAAATTTAACTGTGCCTTCT 59.682 39.130 2.62 0.00 33.33 2.85
4850 5007 3.425193 CACGCAAATTTAACTGTGCCTTC 59.575 43.478 2.62 0.00 33.33 3.46
4851 5008 3.380142 CACGCAAATTTAACTGTGCCTT 58.620 40.909 2.62 0.00 33.33 4.35
4852 5009 2.862140 GCACGCAAATTTAACTGTGCCT 60.862 45.455 18.16 0.00 45.07 4.75
4853 5010 1.455408 GCACGCAAATTTAACTGTGCC 59.545 47.619 18.16 7.14 45.07 5.01
4854 5011 1.122323 CGCACGCAAATTTAACTGTGC 59.878 47.619 18.62 18.62 46.73 4.57
4855 5012 2.380660 ACGCACGCAAATTTAACTGTG 58.619 42.857 0.00 0.00 0.00 3.66
4856 5013 2.766970 ACGCACGCAAATTTAACTGT 57.233 40.000 0.00 0.00 0.00 3.55
4857 5014 4.027295 TGAAAACGCACGCAAATTTAACTG 60.027 37.500 0.00 0.00 0.00 3.16
4858 5015 4.027214 GTGAAAACGCACGCAAATTTAACT 60.027 37.500 0.00 0.00 0.00 2.24
4859 5016 4.190424 GTGAAAACGCACGCAAATTTAAC 58.810 39.130 0.00 0.00 0.00 2.01
4860 5017 3.857665 TGTGAAAACGCACGCAAATTTAA 59.142 34.783 0.00 0.00 41.63 1.52
4861 5018 3.435566 TGTGAAAACGCACGCAAATTTA 58.564 36.364 0.00 0.00 41.63 1.40
4862 5019 2.263077 TGTGAAAACGCACGCAAATTT 58.737 38.095 0.00 0.00 41.63 1.82
4863 5020 1.914634 TGTGAAAACGCACGCAAATT 58.085 40.000 0.00 0.00 41.63 1.82
4864 5021 1.914634 TTGTGAAAACGCACGCAAAT 58.085 40.000 0.00 0.00 41.63 2.32
4865 5022 1.914634 ATTGTGAAAACGCACGCAAA 58.085 40.000 0.00 0.00 41.63 3.68
4866 5023 2.288186 TCTATTGTGAAAACGCACGCAA 59.712 40.909 0.00 0.00 41.63 4.85
4867 5024 1.867865 TCTATTGTGAAAACGCACGCA 59.132 42.857 0.00 0.00 41.63 5.24
4868 5025 2.230864 GTCTATTGTGAAAACGCACGC 58.769 47.619 0.00 0.00 41.63 5.34
4869 5026 3.513462 TGTCTATTGTGAAAACGCACG 57.487 42.857 0.00 0.00 41.63 5.34
4870 5027 4.219033 CCTTGTCTATTGTGAAAACGCAC 58.781 43.478 0.00 0.00 39.22 5.34
4871 5028 3.880490 ACCTTGTCTATTGTGAAAACGCA 59.120 39.130 0.00 0.00 0.00 5.24
4872 5029 4.483476 ACCTTGTCTATTGTGAAAACGC 57.517 40.909 0.00 0.00 0.00 4.84
4873 5030 7.075741 CCTAAACCTTGTCTATTGTGAAAACG 58.924 38.462 0.00 0.00 0.00 3.60
4874 5031 7.368059 CCCTAAACCTTGTCTATTGTGAAAAC 58.632 38.462 0.00 0.00 0.00 2.43
4875 5032 6.015772 GCCCTAAACCTTGTCTATTGTGAAAA 60.016 38.462 0.00 0.00 0.00 2.29
4876 5033 5.475564 GCCCTAAACCTTGTCTATTGTGAAA 59.524 40.000 0.00 0.00 0.00 2.69
4877 5034 5.007682 GCCCTAAACCTTGTCTATTGTGAA 58.992 41.667 0.00 0.00 0.00 3.18
4878 5035 4.585879 GCCCTAAACCTTGTCTATTGTGA 58.414 43.478 0.00 0.00 0.00 3.58
4879 5036 3.374058 CGCCCTAAACCTTGTCTATTGTG 59.626 47.826 0.00 0.00 0.00 3.33
4880 5037 3.606687 CGCCCTAAACCTTGTCTATTGT 58.393 45.455 0.00 0.00 0.00 2.71
4881 5038 2.354821 GCGCCCTAAACCTTGTCTATTG 59.645 50.000 0.00 0.00 0.00 1.90
4882 5039 2.026636 TGCGCCCTAAACCTTGTCTATT 60.027 45.455 4.18 0.00 0.00 1.73
4883 5040 1.557832 TGCGCCCTAAACCTTGTCTAT 59.442 47.619 4.18 0.00 0.00 1.98
4884 5041 0.978151 TGCGCCCTAAACCTTGTCTA 59.022 50.000 4.18 0.00 0.00 2.59
4885 5042 0.328258 ATGCGCCCTAAACCTTGTCT 59.672 50.000 4.18 0.00 0.00 3.41
4886 5043 1.135402 CAATGCGCCCTAAACCTTGTC 60.135 52.381 4.18 0.00 0.00 3.18
4887 5044 0.887933 CAATGCGCCCTAAACCTTGT 59.112 50.000 4.18 0.00 0.00 3.16
4888 5045 0.458370 GCAATGCGCCCTAAACCTTG 60.458 55.000 4.18 0.00 32.94 3.61
4889 5046 0.897863 TGCAATGCGCCCTAAACCTT 60.898 50.000 4.18 0.00 41.33 3.50
4890 5047 0.684153 ATGCAATGCGCCCTAAACCT 60.684 50.000 4.18 0.00 41.33 3.50
4891 5048 0.175531 AATGCAATGCGCCCTAAACC 59.824 50.000 4.18 0.00 41.33 3.27
4892 5049 2.008752 AAATGCAATGCGCCCTAAAC 57.991 45.000 4.18 0.00 41.33 2.01
4893 5050 4.399004 AATAAATGCAATGCGCCCTAAA 57.601 36.364 4.18 0.00 41.33 1.85
4894 5051 4.099266 AGAAATAAATGCAATGCGCCCTAA 59.901 37.500 4.18 0.00 41.33 2.69
4895 5052 3.636300 AGAAATAAATGCAATGCGCCCTA 59.364 39.130 4.18 0.00 41.33 3.53
4896 5053 2.431782 AGAAATAAATGCAATGCGCCCT 59.568 40.909 4.18 0.00 41.33 5.19
4897 5054 2.825205 AGAAATAAATGCAATGCGCCC 58.175 42.857 4.18 0.00 41.33 6.13
4898 5055 4.610945 ACTAGAAATAAATGCAATGCGCC 58.389 39.130 4.18 0.00 41.33 6.53
4899 5056 5.340667 GCTACTAGAAATAAATGCAATGCGC 59.659 40.000 0.00 0.00 42.89 6.09
4900 5057 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
4912 5069 9.012161 CCGGAGTACTAATTAGCTACTAGAAAT 57.988 37.037 19.17 0.00 0.00 2.17
4913 5070 8.213679 TCCGGAGTACTAATTAGCTACTAGAAA 58.786 37.037 19.17 9.49 0.00 2.52
4914 5071 7.739825 TCCGGAGTACTAATTAGCTACTAGAA 58.260 38.462 19.17 9.27 0.00 2.10
4915 5072 7.016072 ACTCCGGAGTACTAATTAGCTACTAGA 59.984 40.741 35.59 16.10 40.43 2.43
4916 5073 7.160726 ACTCCGGAGTACTAATTAGCTACTAG 58.839 42.308 35.59 16.30 40.43 2.57
4917 5074 7.072263 ACTCCGGAGTACTAATTAGCTACTA 57.928 40.000 35.59 9.47 40.43 1.82
4918 5075 5.939447 ACTCCGGAGTACTAATTAGCTACT 58.061 41.667 35.59 19.20 40.43 2.57
4931 5088 8.105197 TGCATATAGAAATAGTACTCCGGAGTA 58.895 37.037 35.34 35.34 42.54 2.59
4932 5089 6.946583 TGCATATAGAAATAGTACTCCGGAGT 59.053 38.462 37.59 37.59 45.02 3.85
4933 5090 7.392494 TGCATATAGAAATAGTACTCCGGAG 57.608 40.000 30.11 30.11 0.00 4.63
4934 5091 7.630728 GCATGCATATAGAAATAGTACTCCGGA 60.631 40.741 14.21 2.93 0.00 5.14
4935 5092 6.477033 GCATGCATATAGAAATAGTACTCCGG 59.523 42.308 14.21 0.00 0.00 5.14
4936 5093 6.197282 CGCATGCATATAGAAATAGTACTCCG 59.803 42.308 19.57 0.00 0.00 4.63
4937 5094 7.036220 ACGCATGCATATAGAAATAGTACTCC 58.964 38.462 19.57 0.00 0.00 3.85
4938 5095 9.227490 CTACGCATGCATATAGAAATAGTACTC 57.773 37.037 19.57 0.00 0.00 2.59
4939 5096 8.740906 ACTACGCATGCATATAGAAATAGTACT 58.259 33.333 19.57 0.00 0.00 2.73
4940 5097 8.799091 CACTACGCATGCATATAGAAATAGTAC 58.201 37.037 19.57 0.00 0.00 2.73
4941 5098 8.520351 ACACTACGCATGCATATAGAAATAGTA 58.480 33.333 19.57 6.04 0.00 1.82
4942 5099 7.329471 CACACTACGCATGCATATAGAAATAGT 59.671 37.037 19.57 5.11 0.00 2.12
4943 5100 7.542130 TCACACTACGCATGCATATAGAAATAG 59.458 37.037 19.57 6.89 0.00 1.73
4944 5101 7.375053 TCACACTACGCATGCATATAGAAATA 58.625 34.615 19.57 3.27 0.00 1.40
4945 5102 6.223120 TCACACTACGCATGCATATAGAAAT 58.777 36.000 19.57 4.78 0.00 2.17
4946 5103 5.596845 TCACACTACGCATGCATATAGAAA 58.403 37.500 19.57 0.00 0.00 2.52
4947 5104 5.195001 TCACACTACGCATGCATATAGAA 57.805 39.130 19.57 2.99 0.00 2.10
4948 5105 4.846779 TCACACTACGCATGCATATAGA 57.153 40.909 19.57 3.38 0.00 1.98
4949 5106 5.669602 GCATTCACACTACGCATGCATATAG 60.670 44.000 19.57 17.15 40.06 1.31
4950 5107 4.152223 GCATTCACACTACGCATGCATATA 59.848 41.667 19.57 5.83 40.06 0.86
4951 5108 3.058708 GCATTCACACTACGCATGCATAT 60.059 43.478 19.57 4.84 40.06 1.78
4952 5109 2.287644 GCATTCACACTACGCATGCATA 59.712 45.455 19.57 5.77 40.06 3.14
4953 5110 1.064505 GCATTCACACTACGCATGCAT 59.935 47.619 19.57 4.54 40.06 3.96
4954 5111 0.447406 GCATTCACACTACGCATGCA 59.553 50.000 19.57 0.00 40.06 3.96
4955 5112 0.729116 AGCATTCACACTACGCATGC 59.271 50.000 7.91 7.91 40.53 4.06
4956 5113 4.801147 AATAGCATTCACACTACGCATG 57.199 40.909 0.00 0.00 0.00 4.06
4957 5114 5.818136 AAAATAGCATTCACACTACGCAT 57.182 34.783 0.00 0.00 0.00 4.73
4958 5115 5.621197 AAAAATAGCATTCACACTACGCA 57.379 34.783 0.00 0.00 0.00 5.24
4977 5134 3.838565 TGGTTGTGAGATGGGCTAAAAA 58.161 40.909 0.00 0.00 0.00 1.94
4978 5135 3.517296 TGGTTGTGAGATGGGCTAAAA 57.483 42.857 0.00 0.00 0.00 1.52
4979 5136 3.517296 TTGGTTGTGAGATGGGCTAAA 57.483 42.857 0.00 0.00 0.00 1.85
4980 5137 3.737559 ATTGGTTGTGAGATGGGCTAA 57.262 42.857 0.00 0.00 0.00 3.09
4981 5138 4.037222 TCTATTGGTTGTGAGATGGGCTA 58.963 43.478 0.00 0.00 0.00 3.93
4982 5139 2.846206 TCTATTGGTTGTGAGATGGGCT 59.154 45.455 0.00 0.00 0.00 5.19
4983 5140 3.281727 TCTATTGGTTGTGAGATGGGC 57.718 47.619 0.00 0.00 0.00 5.36
4984 5141 5.765182 GGTTATCTATTGGTTGTGAGATGGG 59.235 44.000 0.00 0.00 31.25 4.00
4985 5142 6.260936 GTGGTTATCTATTGGTTGTGAGATGG 59.739 42.308 0.00 0.00 31.25 3.51
4986 5143 6.260936 GGTGGTTATCTATTGGTTGTGAGATG 59.739 42.308 0.00 0.00 31.25 2.90
4987 5144 6.158695 AGGTGGTTATCTATTGGTTGTGAGAT 59.841 38.462 0.00 0.00 33.32 2.75
4988 5145 5.487488 AGGTGGTTATCTATTGGTTGTGAGA 59.513 40.000 0.00 0.00 0.00 3.27
4989 5146 5.745227 AGGTGGTTATCTATTGGTTGTGAG 58.255 41.667 0.00 0.00 0.00 3.51
4990 5147 5.772393 AGGTGGTTATCTATTGGTTGTGA 57.228 39.130 0.00 0.00 0.00 3.58
4991 5148 6.055588 CCTAGGTGGTTATCTATTGGTTGTG 58.944 44.000 0.00 0.00 0.00 3.33
4992 5149 6.248569 CCTAGGTGGTTATCTATTGGTTGT 57.751 41.667 0.00 0.00 0.00 3.32
5007 5164 2.182516 ATTCTCTGGGACCTAGGTGG 57.817 55.000 22.10 6.79 42.93 4.61
5008 5165 4.019321 TGAAAATTCTCTGGGACCTAGGTG 60.019 45.833 22.10 4.66 0.00 4.00
5009 5166 4.175962 TGAAAATTCTCTGGGACCTAGGT 58.824 43.478 16.26 16.26 0.00 3.08
5010 5167 4.844349 TGAAAATTCTCTGGGACCTAGG 57.156 45.455 7.41 7.41 0.00 3.02
5011 5168 4.637977 GCTTGAAAATTCTCTGGGACCTAG 59.362 45.833 0.00 0.00 0.00 3.02
5012 5169 4.589908 GCTTGAAAATTCTCTGGGACCTA 58.410 43.478 0.00 0.00 0.00 3.08
5013 5170 3.425659 GCTTGAAAATTCTCTGGGACCT 58.574 45.455 0.00 0.00 0.00 3.85
5014 5171 2.162408 CGCTTGAAAATTCTCTGGGACC 59.838 50.000 0.00 0.00 0.00 4.46
5015 5172 2.414691 GCGCTTGAAAATTCTCTGGGAC 60.415 50.000 0.00 0.00 0.00 4.46
5016 5173 1.812571 GCGCTTGAAAATTCTCTGGGA 59.187 47.619 0.00 0.00 0.00 4.37
5017 5174 1.466360 CGCGCTTGAAAATTCTCTGGG 60.466 52.381 5.56 0.00 0.00 4.45
5018 5175 1.887320 CGCGCTTGAAAATTCTCTGG 58.113 50.000 5.56 0.00 0.00 3.86
5019 5176 1.253999 GCGCGCTTGAAAATTCTCTG 58.746 50.000 26.67 0.00 0.00 3.35
5020 5177 0.169009 GGCGCGCTTGAAAATTCTCT 59.831 50.000 32.29 0.00 0.00 3.10
5021 5178 0.169009 AGGCGCGCTTGAAAATTCTC 59.831 50.000 32.29 9.40 0.00 2.87
5022 5179 0.598065 AAGGCGCGCTTGAAAATTCT 59.402 45.000 32.29 13.22 0.00 2.40
5023 5180 0.984829 GAAGGCGCGCTTGAAAATTC 59.015 50.000 32.29 13.04 0.00 2.17
5024 5181 0.598065 AGAAGGCGCGCTTGAAAATT 59.402 45.000 32.29 6.83 0.00 1.82
5025 5182 1.448985 TAGAAGGCGCGCTTGAAAAT 58.551 45.000 32.29 7.73 0.00 1.82
5026 5183 1.231221 TTAGAAGGCGCGCTTGAAAA 58.769 45.000 32.29 16.96 0.00 2.29
5027 5184 1.069500 GTTTAGAAGGCGCGCTTGAAA 60.069 47.619 32.29 20.57 0.00 2.69
5028 5185 0.515564 GTTTAGAAGGCGCGCTTGAA 59.484 50.000 32.29 15.78 0.00 2.69
5029 5186 1.296056 GGTTTAGAAGGCGCGCTTGA 61.296 55.000 32.29 10.01 0.00 3.02
5030 5187 1.134694 GGTTTAGAAGGCGCGCTTG 59.865 57.895 32.29 0.00 0.00 4.01
5031 5188 2.388232 CGGTTTAGAAGGCGCGCTT 61.388 57.895 32.29 23.01 0.00 4.68
5032 5189 2.813908 CGGTTTAGAAGGCGCGCT 60.814 61.111 32.29 12.85 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.