Multiple sequence alignment - TraesCS2B01G231500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G231500 chr2B 100.000 3430 0 0 1 3430 227686591 227690020 0.000000e+00 6335.0
1 TraesCS2B01G231500 chr2B 98.889 180 1 1 624 802 226731507 226731328 1.540000e-83 320.0
2 TraesCS2B01G231500 chr2B 97.790 181 3 1 623 802 615367271 615367451 9.240000e-81 311.0
3 TraesCS2B01G231500 chr2B 77.698 417 77 9 3003 3404 701180831 701181246 1.230000e-59 241.0
4 TraesCS2B01G231500 chr2B 89.655 58 6 0 3067 3124 772151971 772152028 1.320000e-09 75.0
5 TraesCS2B01G231500 chr2D 94.976 2050 71 17 803 2829 169988084 169986044 0.000000e+00 3186.0
6 TraesCS2B01G231500 chr2D 85.337 682 31 32 4 623 169988749 169988075 2.890000e-180 641.0
7 TraesCS2B01G231500 chr2A 93.803 1065 40 13 1782 2832 180113869 180114921 0.000000e+00 1578.0
8 TraesCS2B01G231500 chr2A 93.718 971 52 7 803 1767 180112915 180113882 0.000000e+00 1447.0
9 TraesCS2B01G231500 chr2A 92.523 321 13 4 43 358 180112253 180112567 1.880000e-122 449.0
10 TraesCS2B01G231500 chr2A 79.378 611 88 24 2836 3427 180115010 180115601 2.480000e-106 396.0
11 TraesCS2B01G231500 chr2A 84.848 231 19 4 409 623 180112694 180112924 5.760000e-53 219.0
12 TraesCS2B01G231500 chr5A 98.907 183 1 1 623 804 521931229 521931047 3.300000e-85 326.0
13 TraesCS2B01G231500 chr4B 98.889 180 1 1 624 802 407990386 407990565 1.540000e-83 320.0
14 TraesCS2B01G231500 chr4B 97.312 186 5 0 623 808 649694817 649694632 1.990000e-82 316.0
15 TraesCS2B01G231500 chr4B 83.030 165 19 6 3141 3304 482643214 482643058 1.280000e-29 141.0
16 TraesCS2B01G231500 chr4A 98.333 180 2 1 624 802 685320874 685321053 7.150000e-82 315.0
17 TraesCS2B01G231500 chr4A 97.814 183 3 1 624 805 714757805 714757623 7.150000e-82 315.0
18 TraesCS2B01G231500 chr3D 97.814 183 2 1 623 803 496769059 496768877 7.150000e-82 315.0
19 TraesCS2B01G231500 chr7B 97.802 182 2 1 624 803 130341731 130341550 2.570000e-81 313.0
20 TraesCS2B01G231500 chr1D 81.847 314 51 5 3120 3430 204986197 204986507 3.400000e-65 259.0
21 TraesCS2B01G231500 chr1D 78.706 371 56 18 3069 3424 392947257 392947619 3.440000e-55 226.0
22 TraesCS2B01G231500 chr1D 92.647 68 5 0 3044 3111 14721187 14721254 7.830000e-17 99.0
23 TraesCS2B01G231500 chr7D 79.661 295 51 8 3120 3413 600889739 600890025 1.610000e-48 204.0
24 TraesCS2B01G231500 chr7A 78.419 329 55 10 3090 3413 692882530 692882847 2.090000e-47 200.0
25 TraesCS2B01G231500 chr6A 79.592 245 46 4 3169 3412 48680597 48680356 4.550000e-39 172.0
26 TraesCS2B01G231500 chr4D 74.833 449 74 22 3011 3427 459302275 459302716 2.120000e-37 167.0
27 TraesCS2B01G231500 chr5D 75.422 415 58 26 3044 3418 421231426 421231836 9.850000e-36 161.0
28 TraesCS2B01G231500 chr3B 79.524 210 34 6 3160 3365 614928550 614928754 1.280000e-29 141.0
29 TraesCS2B01G231500 chr1B 73.759 282 52 14 3156 3423 404955210 404954937 1.310000e-14 91.6
30 TraesCS2B01G231500 chr6D 79.279 111 13 6 3005 3108 454784496 454784603 6.140000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G231500 chr2B 227686591 227690020 3429 False 6335.0 6335 100.0000 1 3430 1 chr2B.!!$F1 3429
1 TraesCS2B01G231500 chr2D 169986044 169988749 2705 True 1913.5 3186 90.1565 4 2829 2 chr2D.!!$R1 2825
2 TraesCS2B01G231500 chr2A 180112253 180115601 3348 False 817.8 1578 88.8540 43 3427 5 chr2A.!!$F1 3384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 833 0.034186 TGCTTGGCCGAGGATTGATT 60.034 50.0 22.06 0.0 0.0 2.57 F
746 884 0.180406 GGGGCCAATTAGAAGAGCGA 59.820 55.0 4.39 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2321 2467 0.322456 TTGCTGTTCCTTCCCATCCG 60.322 55.0 0.0 0.0 0.00 4.18 R
2606 2762 0.366871 CGAAAACCACAGATCGAGCG 59.633 55.0 0.0 0.0 37.48 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.103373 AGGACGTCATGTGTAGCTCAT 58.897 47.619 18.91 0.00 0.00 2.90
50 56 1.337260 GCTCGATGTGTGTGAGGAAGT 60.337 52.381 0.00 0.00 0.00 3.01
83 90 0.820871 CACGGGGAAAGAGGAGAGAG 59.179 60.000 0.00 0.00 0.00 3.20
335 351 3.668757 GCTATTTTCCCGACCGTTTGAAC 60.669 47.826 0.00 0.00 0.00 3.18
346 362 0.109781 CGTTTGAACATGGAAGCCCG 60.110 55.000 0.00 0.00 34.29 6.13
380 427 2.303022 TCTCCGATCACTTCTGCCTTTT 59.697 45.455 0.00 0.00 0.00 2.27
406 505 1.281867 TCCATCCAGCCTGTACAAAGG 59.718 52.381 0.00 0.00 40.63 3.11
438 545 4.720090 ACATCTAAACTGTCACTCGTACG 58.280 43.478 9.53 9.53 0.00 3.67
439 546 3.193157 TCTAAACTGTCACTCGTACGC 57.807 47.619 11.24 0.00 0.00 4.42
451 558 0.528924 TCGTACGCCTGCAGTAACAT 59.471 50.000 13.81 0.00 0.00 2.71
524 637 8.400947 CAGTTTGATTAAGCATAAGCACAGTAT 58.599 33.333 0.00 0.00 45.49 2.12
525 638 8.616076 AGTTTGATTAAGCATAAGCACAGTATC 58.384 33.333 0.00 0.00 45.49 2.24
526 639 8.616076 GTTTGATTAAGCATAAGCACAGTATCT 58.384 33.333 0.00 0.00 45.49 1.98
528 641 6.707608 TGATTAAGCATAAGCACAGTATCTGG 59.292 38.462 0.00 0.00 45.49 3.86
533 651 4.985409 GCATAAGCACAGTATCTGGAGTAC 59.015 45.833 1.90 0.00 41.58 2.73
541 659 7.780745 AGCACAGTATCTGGAGTACTAATTAGT 59.219 37.037 21.35 21.35 36.74 2.24
542 660 7.863375 GCACAGTATCTGGAGTACTAATTAGTG 59.137 40.741 25.27 9.71 35.38 2.74
613 751 1.666872 GTCACACGGGCCACACTAC 60.667 63.158 4.39 0.00 0.00 2.73
614 752 1.835267 TCACACGGGCCACACTACT 60.835 57.895 4.39 0.00 0.00 2.57
615 753 1.374252 CACACGGGCCACACTACTC 60.374 63.158 4.39 0.00 0.00 2.59
616 754 1.835267 ACACGGGCCACACTACTCA 60.835 57.895 4.39 0.00 0.00 3.41
617 755 1.192146 ACACGGGCCACACTACTCAT 61.192 55.000 4.39 0.00 0.00 2.90
618 756 0.740868 CACGGGCCACACTACTCATG 60.741 60.000 4.39 0.00 0.00 3.07
619 757 0.902984 ACGGGCCACACTACTCATGA 60.903 55.000 4.39 0.00 0.00 3.07
620 758 0.465705 CGGGCCACACTACTCATGAT 59.534 55.000 4.39 0.00 0.00 2.45
621 759 1.807755 CGGGCCACACTACTCATGATG 60.808 57.143 4.39 0.00 0.00 3.07
622 760 1.475751 GGGCCACACTACTCATGATGG 60.476 57.143 4.39 6.43 0.00 3.51
623 761 1.475751 GGCCACACTACTCATGATGGG 60.476 57.143 11.73 1.53 0.00 4.00
624 762 1.486310 GCCACACTACTCATGATGGGA 59.514 52.381 11.73 0.00 0.00 4.37
625 763 2.484417 GCCACACTACTCATGATGGGAG 60.484 54.545 11.73 3.15 38.36 4.30
626 764 2.484417 CCACACTACTCATGATGGGAGC 60.484 54.545 0.00 0.00 35.79 4.70
627 765 2.433604 CACACTACTCATGATGGGAGCT 59.566 50.000 0.00 0.00 35.79 4.09
628 766 3.110705 ACACTACTCATGATGGGAGCTT 58.889 45.455 0.00 0.00 35.79 3.74
629 767 3.521126 ACACTACTCATGATGGGAGCTTT 59.479 43.478 0.00 0.00 35.79 3.51
630 768 3.875727 CACTACTCATGATGGGAGCTTTG 59.124 47.826 0.00 0.00 35.79 2.77
631 769 1.760192 ACTCATGATGGGAGCTTTGC 58.240 50.000 0.00 0.00 35.79 3.68
632 770 1.284198 ACTCATGATGGGAGCTTTGCT 59.716 47.619 0.00 0.00 43.88 3.91
633 771 2.507058 ACTCATGATGGGAGCTTTGCTA 59.493 45.455 0.00 0.00 39.88 3.49
634 772 3.139850 CTCATGATGGGAGCTTTGCTAG 58.860 50.000 0.00 0.00 39.88 3.42
635 773 2.773661 TCATGATGGGAGCTTTGCTAGA 59.226 45.455 0.00 0.00 39.88 2.43
636 774 2.698855 TGATGGGAGCTTTGCTAGAC 57.301 50.000 0.00 0.00 39.88 2.59
637 775 1.134699 TGATGGGAGCTTTGCTAGACG 60.135 52.381 0.00 0.00 39.88 4.18
638 776 0.905357 ATGGGAGCTTTGCTAGACGT 59.095 50.000 0.00 0.00 39.88 4.34
639 777 1.552578 TGGGAGCTTTGCTAGACGTA 58.447 50.000 0.00 0.00 39.88 3.57
640 778 1.203994 TGGGAGCTTTGCTAGACGTAC 59.796 52.381 0.00 0.00 39.88 3.67
641 779 1.546834 GGAGCTTTGCTAGACGTACG 58.453 55.000 15.01 15.01 39.88 3.67
642 780 1.546834 GAGCTTTGCTAGACGTACGG 58.453 55.000 21.06 2.24 39.88 4.02
643 781 1.131883 GAGCTTTGCTAGACGTACGGA 59.868 52.381 21.06 3.34 39.88 4.69
644 782 1.132643 AGCTTTGCTAGACGTACGGAG 59.867 52.381 21.06 14.21 36.99 4.63
645 783 3.456798 AGCTTTGCTAGACGTACGGAGT 61.457 50.000 21.06 5.86 40.87 3.85
646 784 2.670509 GCTTTGCTAGACGTACGGAGTT 60.671 50.000 21.06 0.00 37.78 3.01
647 785 3.572584 CTTTGCTAGACGTACGGAGTTT 58.427 45.455 21.06 0.00 37.78 2.66
648 786 3.648339 TTGCTAGACGTACGGAGTTTT 57.352 42.857 21.06 0.00 37.78 2.43
649 787 4.764679 TTGCTAGACGTACGGAGTTTTA 57.235 40.909 21.06 0.00 37.78 1.52
650 788 4.083581 TGCTAGACGTACGGAGTTTTAC 57.916 45.455 21.06 1.74 37.78 2.01
651 789 3.501828 TGCTAGACGTACGGAGTTTTACA 59.498 43.478 21.06 4.41 37.78 2.41
652 790 4.094212 GCTAGACGTACGGAGTTTTACAG 58.906 47.826 21.06 4.44 37.78 2.74
653 791 3.565905 AGACGTACGGAGTTTTACAGG 57.434 47.619 21.06 0.00 37.78 4.00
654 792 3.149196 AGACGTACGGAGTTTTACAGGA 58.851 45.455 21.06 0.00 37.78 3.86
655 793 3.190118 AGACGTACGGAGTTTTACAGGAG 59.810 47.826 21.06 0.00 37.78 3.69
656 794 2.229784 ACGTACGGAGTTTTACAGGAGG 59.770 50.000 21.06 0.00 37.78 4.30
657 795 2.229784 CGTACGGAGTTTTACAGGAGGT 59.770 50.000 7.57 0.00 37.78 3.85
658 796 3.305608 CGTACGGAGTTTTACAGGAGGTT 60.306 47.826 7.57 0.00 37.78 3.50
659 797 3.851458 ACGGAGTTTTACAGGAGGTTT 57.149 42.857 0.00 0.00 37.78 3.27
660 798 4.961438 ACGGAGTTTTACAGGAGGTTTA 57.039 40.909 0.00 0.00 37.78 2.01
661 799 4.635223 ACGGAGTTTTACAGGAGGTTTAC 58.365 43.478 0.00 0.00 37.78 2.01
662 800 4.101430 ACGGAGTTTTACAGGAGGTTTACA 59.899 41.667 0.00 0.00 37.78 2.41
663 801 4.689345 CGGAGTTTTACAGGAGGTTTACAG 59.311 45.833 0.00 0.00 0.00 2.74
664 802 5.001874 GGAGTTTTACAGGAGGTTTACAGG 58.998 45.833 0.00 0.00 0.00 4.00
665 803 5.455755 GGAGTTTTACAGGAGGTTTACAGGT 60.456 44.000 0.00 0.00 0.00 4.00
666 804 6.009908 AGTTTTACAGGAGGTTTACAGGTT 57.990 37.500 0.00 0.00 0.00 3.50
667 805 5.826208 AGTTTTACAGGAGGTTTACAGGTTG 59.174 40.000 0.00 0.00 0.00 3.77
668 806 2.271944 ACAGGAGGTTTACAGGTTGC 57.728 50.000 0.00 0.00 0.00 4.17
669 807 1.774856 ACAGGAGGTTTACAGGTTGCT 59.225 47.619 0.00 0.00 0.00 3.91
670 808 2.174854 ACAGGAGGTTTACAGGTTGCTT 59.825 45.455 0.00 0.00 0.00 3.91
671 809 3.393278 ACAGGAGGTTTACAGGTTGCTTA 59.607 43.478 0.00 0.00 0.00 3.09
672 810 4.141344 ACAGGAGGTTTACAGGTTGCTTAA 60.141 41.667 0.00 0.00 0.00 1.85
673 811 5.010282 CAGGAGGTTTACAGGTTGCTTAAT 58.990 41.667 0.00 0.00 0.00 1.40
674 812 6.177610 CAGGAGGTTTACAGGTTGCTTAATA 58.822 40.000 0.00 0.00 0.00 0.98
675 813 6.316390 CAGGAGGTTTACAGGTTGCTTAATAG 59.684 42.308 0.00 0.00 0.00 1.73
676 814 6.012771 AGGAGGTTTACAGGTTGCTTAATAGT 60.013 38.462 0.00 0.00 0.00 2.12
677 815 6.093633 GGAGGTTTACAGGTTGCTTAATAGTG 59.906 42.308 0.00 0.00 0.00 2.74
678 816 5.414765 AGGTTTACAGGTTGCTTAATAGTGC 59.585 40.000 0.00 0.00 0.00 4.40
679 817 5.414765 GGTTTACAGGTTGCTTAATAGTGCT 59.585 40.000 0.00 0.00 0.00 4.40
680 818 6.072119 GGTTTACAGGTTGCTTAATAGTGCTT 60.072 38.462 0.00 0.00 0.00 3.91
681 819 6.494893 TTACAGGTTGCTTAATAGTGCTTG 57.505 37.500 0.00 0.00 0.00 4.01
682 820 3.758554 ACAGGTTGCTTAATAGTGCTTGG 59.241 43.478 0.00 0.00 0.00 3.61
683 821 2.755103 AGGTTGCTTAATAGTGCTTGGC 59.245 45.455 0.00 0.00 0.00 4.52
684 822 2.159240 GGTTGCTTAATAGTGCTTGGCC 60.159 50.000 0.00 0.00 0.00 5.36
685 823 1.378531 TGCTTAATAGTGCTTGGCCG 58.621 50.000 0.00 0.00 0.00 6.13
686 824 1.065782 TGCTTAATAGTGCTTGGCCGA 60.066 47.619 0.00 0.00 0.00 5.54
687 825 1.599542 GCTTAATAGTGCTTGGCCGAG 59.400 52.381 16.53 16.53 0.00 4.63
688 826 2.213499 CTTAATAGTGCTTGGCCGAGG 58.787 52.381 22.06 3.49 0.00 4.63
689 827 1.491668 TAATAGTGCTTGGCCGAGGA 58.508 50.000 22.06 16.91 0.00 3.71
690 828 0.839946 AATAGTGCTTGGCCGAGGAT 59.160 50.000 22.06 11.21 0.00 3.24
691 829 0.839946 ATAGTGCTTGGCCGAGGATT 59.160 50.000 22.06 17.96 0.00 3.01
692 830 0.107703 TAGTGCTTGGCCGAGGATTG 60.108 55.000 22.06 0.00 0.00 2.67
693 831 1.377202 GTGCTTGGCCGAGGATTGA 60.377 57.895 22.06 0.00 0.00 2.57
694 832 0.749454 GTGCTTGGCCGAGGATTGAT 60.749 55.000 22.06 0.00 0.00 2.57
695 833 0.034186 TGCTTGGCCGAGGATTGATT 60.034 50.000 22.06 0.00 0.00 2.57
696 834 1.211703 TGCTTGGCCGAGGATTGATTA 59.788 47.619 22.06 0.00 0.00 1.75
697 835 2.297701 GCTTGGCCGAGGATTGATTAA 58.702 47.619 22.06 0.00 0.00 1.40
698 836 2.291741 GCTTGGCCGAGGATTGATTAAG 59.708 50.000 22.06 4.43 0.00 1.85
699 837 3.808728 CTTGGCCGAGGATTGATTAAGA 58.191 45.455 12.81 0.00 0.00 2.10
700 838 4.392940 CTTGGCCGAGGATTGATTAAGAT 58.607 43.478 12.81 0.00 0.00 2.40
701 839 3.743521 TGGCCGAGGATTGATTAAGATG 58.256 45.455 0.00 0.00 0.00 2.90
702 840 2.485814 GGCCGAGGATTGATTAAGATGC 59.514 50.000 0.00 0.00 0.00 3.91
703 841 3.141398 GCCGAGGATTGATTAAGATGCA 58.859 45.455 0.00 0.00 0.00 3.96
704 842 3.058639 GCCGAGGATTGATTAAGATGCAC 60.059 47.826 0.00 0.00 0.00 4.57
705 843 3.185188 CCGAGGATTGATTAAGATGCACG 59.815 47.826 0.00 0.00 0.00 5.34
706 844 3.185188 CGAGGATTGATTAAGATGCACGG 59.815 47.826 0.00 0.00 0.00 4.94
707 845 3.480470 AGGATTGATTAAGATGCACGGG 58.520 45.455 0.00 0.00 0.00 5.28
708 846 2.030805 GGATTGATTAAGATGCACGGGC 60.031 50.000 0.34 0.34 41.68 6.13
709 847 1.388547 TTGATTAAGATGCACGGGCC 58.611 50.000 7.46 0.00 40.13 5.80
710 848 0.465460 TGATTAAGATGCACGGGCCC 60.465 55.000 13.57 13.57 40.13 5.80
711 849 0.465460 GATTAAGATGCACGGGCCCA 60.465 55.000 24.92 1.02 40.13 5.36
712 850 0.751643 ATTAAGATGCACGGGCCCAC 60.752 55.000 24.92 11.40 40.13 4.61
713 851 2.830186 TTAAGATGCACGGGCCCACC 62.830 60.000 24.92 9.66 40.13 4.61
722 860 2.283604 GGGCCCACCGGTGAAAAT 60.284 61.111 36.07 0.00 36.48 1.82
723 861 2.348104 GGGCCCACCGGTGAAAATC 61.348 63.158 36.07 18.36 36.48 2.17
724 862 2.696759 GGCCCACCGGTGAAAATCG 61.697 63.158 36.07 17.33 0.00 3.34
744 882 3.117657 GGGGGCCAATTAGAAGAGC 57.882 57.895 4.39 0.00 0.00 4.09
745 883 0.819666 GGGGGCCAATTAGAAGAGCG 60.820 60.000 4.39 0.00 0.00 5.03
746 884 0.180406 GGGGCCAATTAGAAGAGCGA 59.820 55.000 4.39 0.00 0.00 4.93
747 885 1.408266 GGGGCCAATTAGAAGAGCGAA 60.408 52.381 4.39 0.00 0.00 4.70
748 886 2.576615 GGGCCAATTAGAAGAGCGAAT 58.423 47.619 4.39 0.00 0.00 3.34
749 887 2.291741 GGGCCAATTAGAAGAGCGAATG 59.708 50.000 4.39 0.00 0.00 2.67
750 888 2.291741 GGCCAATTAGAAGAGCGAATGG 59.708 50.000 0.00 0.00 0.00 3.16
751 889 2.945668 GCCAATTAGAAGAGCGAATGGT 59.054 45.455 0.00 0.00 0.00 3.55
752 890 3.002759 GCCAATTAGAAGAGCGAATGGTC 59.997 47.826 0.00 0.00 42.99 4.02
753 891 3.561725 CCAATTAGAAGAGCGAATGGTCC 59.438 47.826 0.00 0.00 43.71 4.46
754 892 4.446371 CAATTAGAAGAGCGAATGGTCCT 58.554 43.478 0.00 0.00 43.71 3.85
755 893 4.762289 ATTAGAAGAGCGAATGGTCCTT 57.238 40.909 0.00 0.00 43.71 3.36
756 894 5.871396 ATTAGAAGAGCGAATGGTCCTTA 57.129 39.130 0.00 0.00 43.71 2.69
757 895 5.670792 TTAGAAGAGCGAATGGTCCTTAA 57.329 39.130 0.00 0.00 43.71 1.85
758 896 3.863041 AGAAGAGCGAATGGTCCTTAAC 58.137 45.455 0.00 0.00 43.71 2.01
771 909 5.700722 GGTCCTTAACCTGTAAAAACCTG 57.299 43.478 0.00 0.00 45.45 4.00
772 910 5.135383 GGTCCTTAACCTGTAAAAACCTGT 58.865 41.667 0.00 0.00 45.45 4.00
773 911 6.298361 GGTCCTTAACCTGTAAAAACCTGTA 58.702 40.000 0.00 0.00 45.45 2.74
774 912 6.429078 GGTCCTTAACCTGTAAAAACCTGTAG 59.571 42.308 0.00 0.00 45.45 2.74
775 913 7.219322 GTCCTTAACCTGTAAAAACCTGTAGA 58.781 38.462 0.00 0.00 0.00 2.59
776 914 7.716560 GTCCTTAACCTGTAAAAACCTGTAGAA 59.283 37.037 0.00 0.00 0.00 2.10
777 915 8.442374 TCCTTAACCTGTAAAAACCTGTAGAAT 58.558 33.333 0.00 0.00 0.00 2.40
778 916 8.512138 CCTTAACCTGTAAAAACCTGTAGAATG 58.488 37.037 0.00 0.00 0.00 2.67
779 917 9.280174 CTTAACCTGTAAAAACCTGTAGAATGA 57.720 33.333 0.00 0.00 0.00 2.57
780 918 7.745620 AACCTGTAAAAACCTGTAGAATGAG 57.254 36.000 0.00 0.00 0.00 2.90
781 919 5.705905 ACCTGTAAAAACCTGTAGAATGAGC 59.294 40.000 0.00 0.00 0.00 4.26
782 920 5.123979 CCTGTAAAAACCTGTAGAATGAGCC 59.876 44.000 0.00 0.00 0.00 4.70
783 921 5.876357 TGTAAAAACCTGTAGAATGAGCCT 58.124 37.500 0.00 0.00 0.00 4.58
784 922 5.705441 TGTAAAAACCTGTAGAATGAGCCTG 59.295 40.000 0.00 0.00 0.00 4.85
785 923 4.373156 AAAACCTGTAGAATGAGCCTGT 57.627 40.909 0.00 0.00 0.00 4.00
786 924 5.499004 AAAACCTGTAGAATGAGCCTGTA 57.501 39.130 0.00 0.00 0.00 2.74
787 925 4.473477 AACCTGTAGAATGAGCCTGTAC 57.527 45.455 0.00 0.00 0.00 2.90
788 926 2.427453 ACCTGTAGAATGAGCCTGTACG 59.573 50.000 0.00 0.00 0.00 3.67
789 927 2.427453 CCTGTAGAATGAGCCTGTACGT 59.573 50.000 0.00 0.00 0.00 3.57
790 928 3.439293 CTGTAGAATGAGCCTGTACGTG 58.561 50.000 0.00 0.00 0.00 4.49
791 929 2.823747 TGTAGAATGAGCCTGTACGTGT 59.176 45.455 0.00 0.00 0.00 4.49
792 930 4.011698 TGTAGAATGAGCCTGTACGTGTA 58.988 43.478 0.00 0.00 0.00 2.90
793 931 3.784701 AGAATGAGCCTGTACGTGTAG 57.215 47.619 0.00 0.00 0.00 2.74
794 932 2.159226 AGAATGAGCCTGTACGTGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
795 933 1.182667 ATGAGCCTGTACGTGTAGCA 58.817 50.000 0.00 0.00 0.00 3.49
796 934 1.182667 TGAGCCTGTACGTGTAGCAT 58.817 50.000 0.00 0.00 0.00 3.79
797 935 1.548719 TGAGCCTGTACGTGTAGCATT 59.451 47.619 0.00 0.00 0.00 3.56
798 936 2.028476 TGAGCCTGTACGTGTAGCATTT 60.028 45.455 0.00 0.00 0.00 2.32
799 937 3.000727 GAGCCTGTACGTGTAGCATTTT 58.999 45.455 0.00 0.00 0.00 1.82
800 938 3.408634 AGCCTGTACGTGTAGCATTTTT 58.591 40.909 0.00 0.00 0.00 1.94
801 939 3.188460 AGCCTGTACGTGTAGCATTTTTG 59.812 43.478 0.00 0.00 0.00 2.44
978 1117 0.679505 AGCCGCTCCGCTATAAATCA 59.320 50.000 0.00 0.00 37.32 2.57
1098 1242 1.271656 GAAGGAAGGAGAACGGTCGAA 59.728 52.381 0.00 0.00 0.00 3.71
1106 1250 2.269172 GAGAACGGTCGAAAGGATTCC 58.731 52.381 0.00 0.00 31.52 3.01
1435 1579 2.045926 GCCGATGGAGTTGCCTGT 60.046 61.111 0.00 0.00 37.63 4.00
1448 1592 3.706373 CCTGTACCCGCAGTGGCT 61.706 66.667 0.00 0.00 38.10 4.75
1733 1878 2.094762 ACAACACGGCCAATACTCTC 57.905 50.000 2.24 0.00 0.00 3.20
1753 1898 3.540617 TCAGCAATTCGCCAAGCTATTA 58.459 40.909 0.00 0.00 44.04 0.98
1763 1908 8.798859 ATTCGCCAAGCTATTATAATTCATCT 57.201 30.769 2.68 0.00 0.00 2.90
1765 1910 8.703604 TCGCCAAGCTATTATAATTCATCTAC 57.296 34.615 2.68 0.00 0.00 2.59
1803 1948 8.153550 AGAATTAATTCATCGACTATTCTGGCT 58.846 33.333 26.02 0.78 39.23 4.75
2308 2454 2.609737 CGGCCGTTACTGAAGAGAGTTT 60.610 50.000 19.50 0.00 0.00 2.66
2320 2466 2.261729 AGAGAGTTTCTCCCAGGAACC 58.738 52.381 2.60 0.00 44.42 3.62
2321 2467 1.279558 GAGAGTTTCTCCCAGGAACCC 59.720 57.143 0.00 0.00 37.55 4.11
2322 2468 0.036294 GAGTTTCTCCCAGGAACCCG 60.036 60.000 0.00 0.00 0.00 5.28
2323 2469 1.002502 GTTTCTCCCAGGAACCCGG 60.003 63.158 0.00 0.00 0.00 5.73
2324 2470 1.151987 TTTCTCCCAGGAACCCGGA 60.152 57.895 0.73 0.00 0.00 5.14
2326 2472 1.271840 TTCTCCCAGGAACCCGGATG 61.272 60.000 0.73 0.00 0.00 3.51
2359 2507 7.543756 ACAGCAAAGCAAGTTACTTCTTTTTA 58.456 30.769 14.90 0.00 0.00 1.52
2373 2521 5.128663 ACTTCTTTTTATTGTTGGGTGTGCT 59.871 36.000 0.00 0.00 0.00 4.40
2406 2554 2.028385 GCTCTGGTTTCCGTTTCTCCTA 60.028 50.000 0.00 0.00 0.00 2.94
2455 2609 8.104838 ACTCCTAGTAGTAAGAAGGTGATAGT 57.895 38.462 0.00 0.00 0.00 2.12
2595 2751 1.760192 AGCTGTTTCATGGCATCTCC 58.240 50.000 0.00 0.00 0.00 3.71
2606 2762 0.744771 GGCATCTCCGTGGTTCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
2760 2926 8.499162 CGTTCAATTTTGGATGATCTAGGATAC 58.501 37.037 0.00 0.00 0.00 2.24
2804 2970 3.070159 ACTGAGCACACAACATCTACAGT 59.930 43.478 0.00 0.00 0.00 3.55
2809 2975 3.849911 CACACAACATCTACAGTCGGAT 58.150 45.455 0.00 0.00 0.00 4.18
2870 3125 2.076207 AATCTGGCATTATGGCTGCA 57.924 45.000 19.22 9.53 44.10 4.41
2875 3130 1.737816 GCATTATGGCTGCAGGGTG 59.262 57.895 17.12 0.00 39.46 4.61
2902 3157 2.040544 CACAATGACCGGGCAGTCC 61.041 63.158 18.96 0.00 35.83 3.85
2917 3172 1.268899 CAGTCCCTAAGTCGACGTGTT 59.731 52.381 14.55 3.99 34.10 3.32
2918 3173 1.959282 AGTCCCTAAGTCGACGTGTTT 59.041 47.619 14.55 3.61 34.10 2.83
2925 3180 1.973138 AGTCGACGTGTTTACATCCG 58.027 50.000 10.46 0.00 0.00 4.18
2928 3183 4.659480 ACGTGTTTACATCCGCGT 57.341 50.000 4.92 0.00 42.38 6.01
2929 3184 1.616620 GACGTGTTTACATCCGCGTA 58.383 50.000 4.92 0.00 46.56 4.42
2930 3185 2.187707 GACGTGTTTACATCCGCGTAT 58.812 47.619 4.92 0.00 46.56 3.06
2931 3186 3.362295 GACGTGTTTACATCCGCGTATA 58.638 45.455 4.92 0.00 46.56 1.47
2932 3187 3.108144 ACGTGTTTACATCCGCGTATAC 58.892 45.455 4.92 0.00 44.98 1.47
2933 3188 3.107407 CGTGTTTACATCCGCGTATACA 58.893 45.455 4.92 0.00 32.94 2.29
2934 3189 3.547068 CGTGTTTACATCCGCGTATACAA 59.453 43.478 4.92 0.00 35.83 2.41
2935 3190 4.207635 CGTGTTTACATCCGCGTATACAAT 59.792 41.667 4.92 0.00 35.83 2.71
2936 3191 5.399006 CGTGTTTACATCCGCGTATACAATA 59.601 40.000 4.92 0.00 35.83 1.90
2937 3192 6.088483 CGTGTTTACATCCGCGTATACAATAT 59.912 38.462 4.92 0.00 35.83 1.28
2938 3193 7.442657 GTGTTTACATCCGCGTATACAATATC 58.557 38.462 4.92 0.00 35.83 1.63
2939 3194 7.115236 GTGTTTACATCCGCGTATACAATATCA 59.885 37.037 4.92 0.00 35.83 2.15
2940 3195 7.815549 TGTTTACATCCGCGTATACAATATCAT 59.184 33.333 4.92 0.00 32.59 2.45
2941 3196 7.749539 TTACATCCGCGTATACAATATCATG 57.250 36.000 4.92 0.00 0.00 3.07
2942 3197 4.566759 ACATCCGCGTATACAATATCATGC 59.433 41.667 4.92 0.00 0.00 4.06
2943 3198 4.181309 TCCGCGTATACAATATCATGCA 57.819 40.909 4.92 0.00 0.00 3.96
2944 3199 4.561105 TCCGCGTATACAATATCATGCAA 58.439 39.130 4.92 0.00 0.00 4.08
2945 3200 4.387559 TCCGCGTATACAATATCATGCAAC 59.612 41.667 4.92 0.00 0.00 4.17
2946 3201 4.314820 CGCGTATACAATATCATGCAACG 58.685 43.478 0.00 0.00 0.00 4.10
2947 3202 4.143410 CGCGTATACAATATCATGCAACGT 60.143 41.667 0.00 0.00 0.00 3.99
2948 3203 5.059955 CGCGTATACAATATCATGCAACGTA 59.940 40.000 0.00 0.00 0.00 3.57
2949 3204 6.458503 GCGTATACAATATCATGCAACGTAG 58.541 40.000 3.32 0.00 0.00 3.51
2951 3206 7.271868 GCGTATACAATATCATGCAACGTAGTA 59.728 37.037 3.32 0.00 45.00 1.82
2952 3207 8.572976 CGTATACAATATCATGCAACGTAGTAC 58.427 37.037 3.32 0.00 45.00 2.73
2953 3208 9.401873 GTATACAATATCATGCAACGTAGTACA 57.598 33.333 0.38 0.00 45.00 2.90
2972 3227 2.293399 ACAGGCAAAATCGACAGGAAAC 59.707 45.455 0.00 0.00 0.00 2.78
2973 3228 1.535462 AGGCAAAATCGACAGGAAACG 59.465 47.619 0.00 0.00 0.00 3.60
2976 3231 2.031508 GCAAAATCGACAGGAAACGGAA 60.032 45.455 0.00 0.00 0.00 4.30
2977 3232 3.549221 GCAAAATCGACAGGAAACGGAAA 60.549 43.478 0.00 0.00 0.00 3.13
2978 3233 3.891056 AAATCGACAGGAAACGGAAAC 57.109 42.857 0.00 0.00 0.00 2.78
2980 3235 2.536761 TCGACAGGAAACGGAAACAT 57.463 45.000 0.00 0.00 0.00 2.71
2981 3236 3.663995 TCGACAGGAAACGGAAACATA 57.336 42.857 0.00 0.00 0.00 2.29
2982 3237 3.319755 TCGACAGGAAACGGAAACATAC 58.680 45.455 0.00 0.00 0.00 2.39
2983 3238 3.006110 TCGACAGGAAACGGAAACATACT 59.994 43.478 0.00 0.00 0.00 2.12
3014 3279 7.661437 ACTGATAGCAAAAAGTCATAGTTCACA 59.339 33.333 0.00 0.00 0.00 3.58
3016 3281 5.095691 AGCAAAAAGTCATAGTTCACACG 57.904 39.130 0.00 0.00 0.00 4.49
3026 3291 5.693104 GTCATAGTTCACACGGTTCAAACTA 59.307 40.000 7.88 7.88 36.98 2.24
3028 3293 6.588756 TCATAGTTCACACGGTTCAAACTATC 59.411 38.462 12.41 0.00 39.76 2.08
3030 3295 6.092955 AGTTCACACGGTTCAAACTATCTA 57.907 37.500 0.00 0.00 0.00 1.98
3038 3303 7.040686 ACACGGTTCAAACTATCTAGCAAATTT 60.041 33.333 0.00 0.00 0.00 1.82
3040 3305 8.357402 ACGGTTCAAACTATCTAGCAAATTTTT 58.643 29.630 0.00 0.00 0.00 1.94
3041 3306 8.638565 CGGTTCAAACTATCTAGCAAATTTTTG 58.361 33.333 0.00 0.00 41.03 2.44
3090 3355 1.433534 CGAAGCTTCACCACTTCCTC 58.566 55.000 25.47 0.00 39.29 3.71
3101 3366 4.410400 CTTCCTCGCCGGCCCTTT 62.410 66.667 23.46 0.00 0.00 3.11
3102 3367 4.715523 TTCCTCGCCGGCCCTTTG 62.716 66.667 23.46 6.36 0.00 2.77
3108 3373 4.056125 GCCGGCCCTTTGCACTTC 62.056 66.667 18.11 0.00 43.89 3.01
3118 3383 0.886938 TTTGCACTTCCGATTGCCGA 60.887 50.000 0.00 0.00 41.76 5.54
3121 3411 1.425428 CACTTCCGATTGCCGAAGC 59.575 57.895 0.00 0.00 41.76 3.86
3141 3431 1.209640 GGGTCGATATCGGAGCGTC 59.790 63.158 24.12 8.14 38.38 5.19
3143 3433 1.563435 GGTCGATATCGGAGCGTCGA 61.563 60.000 24.12 6.87 43.61 4.20
3154 3444 2.202453 GCGTCGAAGTCGGACCTC 60.202 66.667 4.14 0.00 39.83 3.85
3157 3447 1.296755 CGTCGAAGTCGGACCTCTCA 61.297 60.000 4.14 0.00 40.29 3.27
3158 3448 0.879765 GTCGAAGTCGGACCTCTCAA 59.120 55.000 4.14 0.00 40.29 3.02
3181 3471 2.695666 GGAGGAGAAATCGGAGATGACA 59.304 50.000 0.00 0.00 45.12 3.58
3199 3489 1.271379 ACAATGTAGCCCTTCAAGCGT 60.271 47.619 0.00 0.00 34.64 5.07
3234 3524 2.126580 CTTGCGCTTGAGCTTGGC 60.127 61.111 9.73 0.00 39.32 4.52
3238 3528 2.979676 CGCTTGAGCTTGGCCACA 60.980 61.111 3.88 0.00 39.32 4.17
3243 3533 2.031163 GAGCTTGGCCACACTCGT 59.969 61.111 16.38 0.00 0.00 4.18
3245 3535 0.320421 GAGCTTGGCCACACTCGTTA 60.320 55.000 16.38 0.00 0.00 3.18
3251 3541 1.669440 GCCACACTCGTTACCTCCA 59.331 57.895 0.00 0.00 0.00 3.86
3272 3563 4.069232 CCTCCCGCTCGACTGCAA 62.069 66.667 0.00 0.00 0.00 4.08
3306 3597 0.822164 GCTGCTTGGCATTGATCCTT 59.178 50.000 0.00 0.00 38.13 3.36
3307 3598 1.202382 GCTGCTTGGCATTGATCCTTC 60.202 52.381 0.00 0.00 38.13 3.46
3312 3603 0.464373 TGGCATTGATCCTTCGGAGC 60.464 55.000 0.00 0.00 38.78 4.70
3334 3625 2.268920 GGGCATCTGTCTTCGCCA 59.731 61.111 0.00 0.00 46.75 5.69
3336 3627 1.162800 GGGCATCTGTCTTCGCCATC 61.163 60.000 0.00 0.00 46.75 3.51
3337 3628 1.493950 GGCATCTGTCTTCGCCATCG 61.494 60.000 0.00 0.00 44.25 3.84
3340 3631 2.809446 CATCTGTCTTCGCCATCGTAA 58.191 47.619 0.00 0.00 36.96 3.18
3347 3638 0.604073 TTCGCCATCGTAAGTGACCA 59.396 50.000 0.00 0.00 36.96 4.02
3349 3640 1.206132 TCGCCATCGTAAGTGACCAAT 59.794 47.619 0.00 0.00 36.96 3.16
3393 3684 2.735772 ATCCTCGTTGGGCATCGCT 61.736 57.895 0.00 0.00 36.20 4.93
3395 3686 2.125552 CTCGTTGGGCATCGCTGA 60.126 61.111 0.00 0.00 0.00 4.26
3402 3693 2.528743 GGGCATCGCTGACATCACG 61.529 63.158 0.00 0.00 28.82 4.35
3404 3695 2.617225 CATCGCTGACATCACGCG 59.383 61.111 3.53 3.53 41.40 6.01
3406 3697 1.874019 ATCGCTGACATCACGCGAC 60.874 57.895 15.93 0.00 46.47 5.19
3429 3720 2.515398 CAGGGGAACTGCACACCA 59.485 61.111 0.00 0.00 40.97 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.545841 TGAGCTACACATGACGTCCT 58.454 50.000 14.12 0.00 0.00 3.85
1 2 2.586258 ATGAGCTACACATGACGTCC 57.414 50.000 14.12 0.00 0.00 4.79
2 3 4.201920 TGTCTATGAGCTACACATGACGTC 60.202 45.833 9.11 9.11 33.27 4.34
11 12 3.570540 AGCTCCATGTCTATGAGCTACA 58.429 45.455 18.33 0.00 41.59 2.74
14 15 1.612950 CGAGCTCCATGTCTATGAGCT 59.387 52.381 19.42 19.42 43.76 4.09
20 21 2.099756 CACACATCGAGCTCCATGTCTA 59.900 50.000 22.23 0.00 30.48 2.59
50 56 2.571757 CGTGCGAGGTTCTAGCCA 59.428 61.111 0.00 0.00 31.23 4.75
83 90 1.868498 CCTCTCGTCTCGTGTCTATCC 59.132 57.143 0.00 0.00 0.00 2.59
200 211 2.046023 CTGGTGGCATCCGCTTCA 60.046 61.111 0.00 0.00 38.60 3.02
335 351 0.539051 AGAAGAGACGGGCTTCCATG 59.461 55.000 9.59 0.00 42.04 3.66
346 362 5.298276 AGTGATCGGAGATTGTAGAAGAGAC 59.702 44.000 0.00 0.00 45.12 3.36
380 427 0.326904 ACAGGCTGGATGGAGATGGA 60.327 55.000 20.34 0.00 0.00 3.41
429 536 0.109458 TTACTGCAGGCGTACGAGTG 60.109 55.000 21.65 15.79 0.00 3.51
438 545 6.538742 TCTTAATCAACTATGTTACTGCAGGC 59.461 38.462 19.93 8.42 0.00 4.85
439 546 8.668510 ATCTTAATCAACTATGTTACTGCAGG 57.331 34.615 19.93 0.00 0.00 4.85
496 609 6.380995 TGTGCTTATGCTTAATCAAACTGTG 58.619 36.000 1.96 0.00 40.48 3.66
524 637 7.230108 CCGATTACCACTAATTAGTACTCCAGA 59.770 40.741 17.62 2.02 34.13 3.86
525 638 7.368833 CCGATTACCACTAATTAGTACTCCAG 58.631 42.308 17.62 4.78 34.13 3.86
526 639 6.266103 CCCGATTACCACTAATTAGTACTCCA 59.734 42.308 17.62 2.50 34.13 3.86
528 641 7.516198 TCCCGATTACCACTAATTAGTACTC 57.484 40.000 17.62 6.08 34.13 2.59
533 651 6.589135 ACCTTTCCCGATTACCACTAATTAG 58.411 40.000 11.05 11.05 0.00 1.73
541 659 1.205417 GTCGACCTTTCCCGATTACCA 59.795 52.381 3.51 0.00 37.14 3.25
542 660 1.800286 CGTCGACCTTTCCCGATTACC 60.800 57.143 10.58 0.00 37.14 2.85
613 751 2.054232 AGCAAAGCTCCCATCATGAG 57.946 50.000 0.09 0.00 30.62 2.90
614 752 2.773661 TCTAGCAAAGCTCCCATCATGA 59.226 45.455 0.00 0.00 40.44 3.07
615 753 2.877168 GTCTAGCAAAGCTCCCATCATG 59.123 50.000 0.00 0.00 40.44 3.07
616 754 2.484417 CGTCTAGCAAAGCTCCCATCAT 60.484 50.000 0.00 0.00 40.44 2.45
617 755 1.134699 CGTCTAGCAAAGCTCCCATCA 60.135 52.381 0.00 0.00 40.44 3.07
618 756 1.134670 ACGTCTAGCAAAGCTCCCATC 60.135 52.381 0.00 0.00 40.44 3.51
619 757 0.905357 ACGTCTAGCAAAGCTCCCAT 59.095 50.000 0.00 0.00 40.44 4.00
620 758 1.203994 GTACGTCTAGCAAAGCTCCCA 59.796 52.381 0.00 0.00 40.44 4.37
621 759 1.798079 CGTACGTCTAGCAAAGCTCCC 60.798 57.143 7.22 0.00 40.44 4.30
622 760 1.546834 CGTACGTCTAGCAAAGCTCC 58.453 55.000 7.22 0.00 40.44 4.70
623 761 1.131883 TCCGTACGTCTAGCAAAGCTC 59.868 52.381 15.21 0.00 40.44 4.09
624 762 1.132643 CTCCGTACGTCTAGCAAAGCT 59.867 52.381 15.21 0.00 43.41 3.74
625 763 1.135460 ACTCCGTACGTCTAGCAAAGC 60.135 52.381 15.21 0.00 0.00 3.51
626 764 2.915738 ACTCCGTACGTCTAGCAAAG 57.084 50.000 15.21 0.00 0.00 2.77
627 765 3.648339 AAACTCCGTACGTCTAGCAAA 57.352 42.857 15.21 0.00 0.00 3.68
628 766 3.648339 AAAACTCCGTACGTCTAGCAA 57.352 42.857 15.21 0.00 0.00 3.91
629 767 3.501828 TGTAAAACTCCGTACGTCTAGCA 59.498 43.478 15.21 0.15 0.00 3.49
630 768 4.083581 TGTAAAACTCCGTACGTCTAGC 57.916 45.455 15.21 0.00 0.00 3.42
631 769 4.393062 TCCTGTAAAACTCCGTACGTCTAG 59.607 45.833 15.21 10.84 0.00 2.43
632 770 4.323417 TCCTGTAAAACTCCGTACGTCTA 58.677 43.478 15.21 0.00 0.00 2.59
633 771 3.149196 TCCTGTAAAACTCCGTACGTCT 58.851 45.455 15.21 0.00 0.00 4.18
634 772 3.496155 CTCCTGTAAAACTCCGTACGTC 58.504 50.000 15.21 0.00 0.00 4.34
635 773 2.229784 CCTCCTGTAAAACTCCGTACGT 59.770 50.000 15.21 0.00 0.00 3.57
636 774 2.229784 ACCTCCTGTAAAACTCCGTACG 59.770 50.000 8.69 8.69 0.00 3.67
637 775 3.949842 ACCTCCTGTAAAACTCCGTAC 57.050 47.619 0.00 0.00 0.00 3.67
638 776 4.961438 AAACCTCCTGTAAAACTCCGTA 57.039 40.909 0.00 0.00 0.00 4.02
639 777 3.851458 AAACCTCCTGTAAAACTCCGT 57.149 42.857 0.00 0.00 0.00 4.69
640 778 4.634199 TGTAAACCTCCTGTAAAACTCCG 58.366 43.478 0.00 0.00 0.00 4.63
641 779 5.001874 CCTGTAAACCTCCTGTAAAACTCC 58.998 45.833 0.00 0.00 0.00 3.85
642 780 5.618236 ACCTGTAAACCTCCTGTAAAACTC 58.382 41.667 0.00 0.00 0.00 3.01
643 781 5.641789 ACCTGTAAACCTCCTGTAAAACT 57.358 39.130 0.00 0.00 0.00 2.66
644 782 5.506815 GCAACCTGTAAACCTCCTGTAAAAC 60.507 44.000 0.00 0.00 0.00 2.43
645 783 4.581409 GCAACCTGTAAACCTCCTGTAAAA 59.419 41.667 0.00 0.00 0.00 1.52
646 784 4.139038 GCAACCTGTAAACCTCCTGTAAA 58.861 43.478 0.00 0.00 0.00 2.01
647 785 3.393278 AGCAACCTGTAAACCTCCTGTAA 59.607 43.478 0.00 0.00 0.00 2.41
648 786 2.976882 AGCAACCTGTAAACCTCCTGTA 59.023 45.455 0.00 0.00 0.00 2.74
649 787 1.774856 AGCAACCTGTAAACCTCCTGT 59.225 47.619 0.00 0.00 0.00 4.00
650 788 2.568623 AGCAACCTGTAAACCTCCTG 57.431 50.000 0.00 0.00 0.00 3.86
651 789 4.717279 TTAAGCAACCTGTAAACCTCCT 57.283 40.909 0.00 0.00 0.00 3.69
652 790 6.093633 CACTATTAAGCAACCTGTAAACCTCC 59.906 42.308 0.00 0.00 0.00 4.30
653 791 6.403309 GCACTATTAAGCAACCTGTAAACCTC 60.403 42.308 0.00 0.00 0.00 3.85
654 792 5.414765 GCACTATTAAGCAACCTGTAAACCT 59.585 40.000 0.00 0.00 0.00 3.50
655 793 5.414765 AGCACTATTAAGCAACCTGTAAACC 59.585 40.000 0.00 0.00 0.00 3.27
656 794 6.496338 AGCACTATTAAGCAACCTGTAAAC 57.504 37.500 0.00 0.00 0.00 2.01
657 795 6.072175 CCAAGCACTATTAAGCAACCTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
658 796 5.414454 CCAAGCACTATTAAGCAACCTGTAA 59.586 40.000 0.00 0.00 0.00 2.41
659 797 4.941263 CCAAGCACTATTAAGCAACCTGTA 59.059 41.667 0.00 0.00 0.00 2.74
660 798 3.758554 CCAAGCACTATTAAGCAACCTGT 59.241 43.478 0.00 0.00 0.00 4.00
661 799 3.428045 GCCAAGCACTATTAAGCAACCTG 60.428 47.826 0.00 0.00 0.00 4.00
662 800 2.755103 GCCAAGCACTATTAAGCAACCT 59.245 45.455 0.00 0.00 0.00 3.50
663 801 2.159240 GGCCAAGCACTATTAAGCAACC 60.159 50.000 0.00 0.00 0.00 3.77
664 802 2.477863 CGGCCAAGCACTATTAAGCAAC 60.478 50.000 2.24 0.00 0.00 4.17
665 803 1.742831 CGGCCAAGCACTATTAAGCAA 59.257 47.619 2.24 0.00 0.00 3.91
666 804 1.065782 TCGGCCAAGCACTATTAAGCA 60.066 47.619 2.24 0.00 0.00 3.91
667 805 1.599542 CTCGGCCAAGCACTATTAAGC 59.400 52.381 2.24 0.00 0.00 3.09
668 806 2.158957 TCCTCGGCCAAGCACTATTAAG 60.159 50.000 2.24 0.00 0.00 1.85
669 807 1.834896 TCCTCGGCCAAGCACTATTAA 59.165 47.619 2.24 0.00 0.00 1.40
670 808 1.491668 TCCTCGGCCAAGCACTATTA 58.508 50.000 2.24 0.00 0.00 0.98
671 809 0.839946 ATCCTCGGCCAAGCACTATT 59.160 50.000 2.24 0.00 0.00 1.73
672 810 0.839946 AATCCTCGGCCAAGCACTAT 59.160 50.000 2.24 0.00 0.00 2.12
673 811 0.107703 CAATCCTCGGCCAAGCACTA 60.108 55.000 2.24 0.00 0.00 2.74
674 812 1.377725 CAATCCTCGGCCAAGCACT 60.378 57.895 2.24 0.00 0.00 4.40
675 813 0.749454 ATCAATCCTCGGCCAAGCAC 60.749 55.000 2.24 0.00 0.00 4.40
676 814 0.034186 AATCAATCCTCGGCCAAGCA 60.034 50.000 2.24 0.00 0.00 3.91
677 815 1.967319 TAATCAATCCTCGGCCAAGC 58.033 50.000 2.24 0.00 0.00 4.01
678 816 3.808728 TCTTAATCAATCCTCGGCCAAG 58.191 45.455 2.24 0.00 0.00 3.61
679 817 3.924114 TCTTAATCAATCCTCGGCCAA 57.076 42.857 2.24 0.00 0.00 4.52
680 818 3.743521 CATCTTAATCAATCCTCGGCCA 58.256 45.455 2.24 0.00 0.00 5.36
681 819 2.485814 GCATCTTAATCAATCCTCGGCC 59.514 50.000 0.00 0.00 0.00 6.13
682 820 3.058639 GTGCATCTTAATCAATCCTCGGC 60.059 47.826 0.00 0.00 0.00 5.54
683 821 3.185188 CGTGCATCTTAATCAATCCTCGG 59.815 47.826 0.00 0.00 0.00 4.63
684 822 3.185188 CCGTGCATCTTAATCAATCCTCG 59.815 47.826 0.00 0.00 0.00 4.63
685 823 3.499918 CCCGTGCATCTTAATCAATCCTC 59.500 47.826 0.00 0.00 0.00 3.71
686 824 3.480470 CCCGTGCATCTTAATCAATCCT 58.520 45.455 0.00 0.00 0.00 3.24
687 825 2.030805 GCCCGTGCATCTTAATCAATCC 60.031 50.000 0.00 0.00 37.47 3.01
688 826 2.030805 GGCCCGTGCATCTTAATCAATC 60.031 50.000 0.00 0.00 40.13 2.67
689 827 1.956477 GGCCCGTGCATCTTAATCAAT 59.044 47.619 0.00 0.00 40.13 2.57
690 828 1.388547 GGCCCGTGCATCTTAATCAA 58.611 50.000 0.00 0.00 40.13 2.57
691 829 0.465460 GGGCCCGTGCATCTTAATCA 60.465 55.000 5.69 0.00 40.13 2.57
692 830 0.465460 TGGGCCCGTGCATCTTAATC 60.465 55.000 19.37 0.00 40.13 1.75
693 831 0.751643 GTGGGCCCGTGCATCTTAAT 60.752 55.000 19.37 0.00 40.13 1.40
694 832 1.377987 GTGGGCCCGTGCATCTTAA 60.378 57.895 19.37 0.00 40.13 1.85
695 833 2.270850 GTGGGCCCGTGCATCTTA 59.729 61.111 19.37 0.00 40.13 2.10
696 834 4.740822 GGTGGGCCCGTGCATCTT 62.741 66.667 19.37 0.00 40.13 2.40
705 843 2.283604 ATTTTCACCGGTGGGCCC 60.284 61.111 33.40 17.59 36.48 5.80
706 844 2.696759 CGATTTTCACCGGTGGGCC 61.697 63.158 33.40 16.88 36.48 5.80
707 845 2.696759 CCGATTTTCACCGGTGGGC 61.697 63.158 33.40 16.83 40.78 5.36
708 846 2.043980 CCCGATTTTCACCGGTGGG 61.044 63.158 33.40 23.97 43.93 4.61
709 847 2.043980 CCCCGATTTTCACCGGTGG 61.044 63.158 33.40 16.11 43.93 4.61
710 848 2.043980 CCCCCGATTTTCACCGGTG 61.044 63.158 29.26 29.26 43.93 4.94
711 849 2.353573 CCCCCGATTTTCACCGGT 59.646 61.111 0.00 0.00 43.93 5.28
726 864 0.819666 CGCTCTTCTAATTGGCCCCC 60.820 60.000 0.00 0.00 0.00 5.40
727 865 0.180406 TCGCTCTTCTAATTGGCCCC 59.820 55.000 0.00 0.00 0.00 5.80
728 866 2.038387 TTCGCTCTTCTAATTGGCCC 57.962 50.000 0.00 0.00 0.00 5.80
729 867 2.291741 CCATTCGCTCTTCTAATTGGCC 59.708 50.000 0.00 0.00 0.00 5.36
730 868 2.945668 ACCATTCGCTCTTCTAATTGGC 59.054 45.455 0.00 0.00 0.00 4.52
731 869 3.561725 GGACCATTCGCTCTTCTAATTGG 59.438 47.826 0.00 0.00 0.00 3.16
732 870 4.446371 AGGACCATTCGCTCTTCTAATTG 58.554 43.478 0.00 0.00 0.00 2.32
733 871 4.762289 AGGACCATTCGCTCTTCTAATT 57.238 40.909 0.00 0.00 0.00 1.40
734 872 4.762289 AAGGACCATTCGCTCTTCTAAT 57.238 40.909 0.00 0.00 0.00 1.73
735 873 5.416947 GTTAAGGACCATTCGCTCTTCTAA 58.583 41.667 0.00 0.00 0.00 2.10
736 874 5.007385 GTTAAGGACCATTCGCTCTTCTA 57.993 43.478 0.00 0.00 0.00 2.10
737 875 3.863041 GTTAAGGACCATTCGCTCTTCT 58.137 45.455 0.00 0.00 0.00 2.85
750 888 7.219322 TCTACAGGTTTTTACAGGTTAAGGAC 58.781 38.462 0.00 0.00 0.00 3.85
751 889 7.377696 TCTACAGGTTTTTACAGGTTAAGGA 57.622 36.000 0.00 0.00 0.00 3.36
752 890 8.512138 CATTCTACAGGTTTTTACAGGTTAAGG 58.488 37.037 0.00 0.00 0.00 2.69
753 891 9.280174 TCATTCTACAGGTTTTTACAGGTTAAG 57.720 33.333 0.00 0.00 0.00 1.85
754 892 9.280174 CTCATTCTACAGGTTTTTACAGGTTAA 57.720 33.333 0.00 0.00 0.00 2.01
755 893 7.389607 GCTCATTCTACAGGTTTTTACAGGTTA 59.610 37.037 0.00 0.00 0.00 2.85
756 894 6.206829 GCTCATTCTACAGGTTTTTACAGGTT 59.793 38.462 0.00 0.00 0.00 3.50
757 895 5.705905 GCTCATTCTACAGGTTTTTACAGGT 59.294 40.000 0.00 0.00 0.00 4.00
758 896 5.123979 GGCTCATTCTACAGGTTTTTACAGG 59.876 44.000 0.00 0.00 0.00 4.00
759 897 5.940470 AGGCTCATTCTACAGGTTTTTACAG 59.060 40.000 0.00 0.00 0.00 2.74
760 898 5.705441 CAGGCTCATTCTACAGGTTTTTACA 59.295 40.000 0.00 0.00 0.00 2.41
761 899 5.705905 ACAGGCTCATTCTACAGGTTTTTAC 59.294 40.000 0.00 0.00 0.00 2.01
762 900 5.876357 ACAGGCTCATTCTACAGGTTTTTA 58.124 37.500 0.00 0.00 0.00 1.52
763 901 4.729868 ACAGGCTCATTCTACAGGTTTTT 58.270 39.130 0.00 0.00 0.00 1.94
764 902 4.373156 ACAGGCTCATTCTACAGGTTTT 57.627 40.909 0.00 0.00 0.00 2.43
765 903 4.620803 CGTACAGGCTCATTCTACAGGTTT 60.621 45.833 0.00 0.00 0.00 3.27
766 904 3.119101 CGTACAGGCTCATTCTACAGGTT 60.119 47.826 0.00 0.00 0.00 3.50
767 905 2.427453 CGTACAGGCTCATTCTACAGGT 59.573 50.000 0.00 0.00 0.00 4.00
768 906 2.427453 ACGTACAGGCTCATTCTACAGG 59.573 50.000 0.00 0.00 0.00 4.00
769 907 3.119459 ACACGTACAGGCTCATTCTACAG 60.119 47.826 0.00 0.00 0.00 2.74
770 908 2.823747 ACACGTACAGGCTCATTCTACA 59.176 45.455 0.00 0.00 0.00 2.74
771 909 3.505464 ACACGTACAGGCTCATTCTAC 57.495 47.619 0.00 0.00 0.00 2.59
772 910 3.066342 GCTACACGTACAGGCTCATTCTA 59.934 47.826 0.00 0.00 0.00 2.10
773 911 2.159226 GCTACACGTACAGGCTCATTCT 60.159 50.000 0.00 0.00 0.00 2.40
774 912 2.194271 GCTACACGTACAGGCTCATTC 58.806 52.381 0.00 0.00 0.00 2.67
775 913 1.548719 TGCTACACGTACAGGCTCATT 59.451 47.619 0.00 0.00 0.00 2.57
776 914 1.182667 TGCTACACGTACAGGCTCAT 58.817 50.000 0.00 0.00 0.00 2.90
777 915 1.182667 ATGCTACACGTACAGGCTCA 58.817 50.000 0.00 0.00 0.00 4.26
778 916 2.295253 AATGCTACACGTACAGGCTC 57.705 50.000 0.00 0.00 0.00 4.70
779 917 2.762535 AAATGCTACACGTACAGGCT 57.237 45.000 0.00 0.00 0.00 4.58
780 918 3.488489 CAAAAATGCTACACGTACAGGC 58.512 45.455 0.00 0.00 0.00 4.85
781 919 3.188460 AGCAAAAATGCTACACGTACAGG 59.812 43.478 0.67 0.00 44.28 4.00
782 920 4.084066 TGAGCAAAAATGCTACACGTACAG 60.084 41.667 2.89 0.00 46.36 2.74
783 921 3.810386 TGAGCAAAAATGCTACACGTACA 59.190 39.130 2.89 0.00 46.36 2.90
784 922 4.398549 TGAGCAAAAATGCTACACGTAC 57.601 40.909 2.89 0.00 46.36 3.67
785 923 4.693095 TCATGAGCAAAAATGCTACACGTA 59.307 37.500 2.89 0.00 46.36 3.57
786 924 3.501828 TCATGAGCAAAAATGCTACACGT 59.498 39.130 2.89 0.00 46.36 4.49
787 925 4.082274 TCATGAGCAAAAATGCTACACG 57.918 40.909 2.89 0.00 46.36 4.49
788 926 4.802039 CCATCATGAGCAAAAATGCTACAC 59.198 41.667 2.89 0.00 46.36 2.90
789 927 4.463539 ACCATCATGAGCAAAAATGCTACA 59.536 37.500 2.89 4.66 46.36 2.74
790 928 5.002464 ACCATCATGAGCAAAAATGCTAC 57.998 39.130 2.89 0.00 46.36 3.58
791 929 4.951715 AGACCATCATGAGCAAAAATGCTA 59.048 37.500 2.89 0.00 46.36 3.49
793 931 4.119442 AGACCATCATGAGCAAAAATGC 57.881 40.909 0.09 0.00 0.00 3.56
794 932 6.493116 GTCTAGACCATCATGAGCAAAAATG 58.507 40.000 12.13 0.00 0.00 2.32
795 933 6.690194 GTCTAGACCATCATGAGCAAAAAT 57.310 37.500 12.13 0.00 0.00 1.82
900 1038 1.437573 GGATGACGGTGAGATGCGA 59.562 57.895 0.00 0.00 0.00 5.10
904 1042 3.971894 GGGGGATGACGGTGAGAT 58.028 61.111 0.00 0.00 0.00 2.75
1059 1203 2.923035 CCCCCACTCACCGTGACT 60.923 66.667 0.00 0.00 46.81 3.41
1610 1754 4.555709 AACGGCGCCACCTCAACA 62.556 61.111 28.98 0.00 35.61 3.33
1694 1838 0.770557 TGTTACCTTCTGGGCTGGGT 60.771 55.000 0.00 0.00 39.10 4.51
1733 1878 2.857592 AATAGCTTGGCGAATTGCTG 57.142 45.000 5.61 0.00 45.43 4.41
1778 1923 8.316640 AGCCAGAATAGTCGATGAATTAATTC 57.683 34.615 19.37 19.37 37.31 2.17
1862 2008 6.142161 ACAATCGACATCAACACAAAATTTCG 59.858 34.615 0.00 0.00 0.00 3.46
1945 2091 1.079543 CTTCCACGTGCTCTCCAGG 60.080 63.158 10.91 0.00 35.50 4.45
2137 2283 4.821589 CGCACCTTCCTCTCGCCC 62.822 72.222 0.00 0.00 0.00 6.13
2308 2454 1.689233 CATCCGGGTTCCTGGGAGA 60.689 63.158 15.79 0.00 32.43 3.71
2320 2466 1.452108 GCTGTTCCTTCCCATCCGG 60.452 63.158 0.00 0.00 0.00 5.14
2321 2467 0.322456 TTGCTGTTCCTTCCCATCCG 60.322 55.000 0.00 0.00 0.00 4.18
2322 2468 1.821136 CTTTGCTGTTCCTTCCCATCC 59.179 52.381 0.00 0.00 0.00 3.51
2323 2469 1.203287 GCTTTGCTGTTCCTTCCCATC 59.797 52.381 0.00 0.00 0.00 3.51
2324 2470 1.260544 GCTTTGCTGTTCCTTCCCAT 58.739 50.000 0.00 0.00 0.00 4.00
2326 2472 1.000171 CTTGCTTTGCTGTTCCTTCCC 60.000 52.381 0.00 0.00 0.00 3.97
2329 2475 3.954258 AGTAACTTGCTTTGCTGTTCCTT 59.046 39.130 0.00 0.00 31.56 3.36
2359 2507 1.518056 CGAGCAGCACACCCAACAAT 61.518 55.000 0.00 0.00 0.00 2.71
2373 2521 0.465460 ACCAGAGCCAAAAACGAGCA 60.465 50.000 0.00 0.00 0.00 4.26
2406 2554 9.520515 AGTTATTGACAGAACCATTTCTTACAT 57.479 29.630 0.08 0.00 40.34 2.29
2455 2609 4.081642 GTCCCTTGTGCAGAACTACTATCA 60.082 45.833 0.00 0.00 0.00 2.15
2466 2620 4.338118 TCAACTTTTAAGTCCCTTGTGCAG 59.662 41.667 0.00 0.00 38.57 4.41
2497 2651 2.216898 GCCCTCACTAATCTGCATCAC 58.783 52.381 0.00 0.00 0.00 3.06
2595 2751 1.140407 GATCGAGCGAAGGAACCACG 61.140 60.000 0.00 0.00 0.00 4.94
2606 2762 0.366871 CGAAAACCACAGATCGAGCG 59.633 55.000 0.00 0.00 37.48 5.03
2832 2998 3.368571 GGCAAGTCCAGCTGTGGC 61.369 66.667 13.81 12.74 44.60 5.01
2855 3106 1.456145 CCCTGCAGCCATAATGCCA 60.456 57.895 8.66 0.00 43.18 4.92
2884 3139 2.040544 GGACTGCCCGGTCATTGTG 61.041 63.158 0.00 0.00 37.91 3.33
2885 3140 2.351276 GGACTGCCCGGTCATTGT 59.649 61.111 0.00 0.00 37.91 2.71
2886 3141 2.438434 GGGACTGCCCGGTCATTG 60.438 66.667 0.00 0.00 46.48 2.82
2902 3157 3.855950 GGATGTAAACACGTCGACTTAGG 59.144 47.826 14.70 0.00 0.00 2.69
2907 3162 0.364515 GCGGATGTAAACACGTCGAC 59.635 55.000 5.18 5.18 0.00 4.20
2909 3164 1.339134 CGCGGATGTAAACACGTCG 59.661 57.895 0.00 0.00 0.00 5.12
2910 3165 1.616620 TACGCGGATGTAAACACGTC 58.383 50.000 12.47 0.00 35.15 4.34
2917 3172 6.254804 GCATGATATTGTATACGCGGATGTAA 59.745 38.462 15.81 9.36 0.00 2.41
2918 3173 5.746721 GCATGATATTGTATACGCGGATGTA 59.253 40.000 15.81 0.00 0.00 2.29
2925 3180 5.264060 ACGTTGCATGATATTGTATACGC 57.736 39.130 0.00 0.00 0.00 4.42
2928 3183 9.620660 CTGTACTACGTTGCATGATATTGTATA 57.379 33.333 0.00 0.00 0.00 1.47
2929 3184 7.598869 CCTGTACTACGTTGCATGATATTGTAT 59.401 37.037 0.00 0.00 0.00 2.29
2930 3185 6.921307 CCTGTACTACGTTGCATGATATTGTA 59.079 38.462 0.00 0.00 0.00 2.41
2931 3186 5.753438 CCTGTACTACGTTGCATGATATTGT 59.247 40.000 0.00 0.00 0.00 2.71
2932 3187 5.333339 GCCTGTACTACGTTGCATGATATTG 60.333 44.000 0.00 0.00 0.00 1.90
2933 3188 4.750098 GCCTGTACTACGTTGCATGATATT 59.250 41.667 0.00 0.00 0.00 1.28
2934 3189 4.202212 TGCCTGTACTACGTTGCATGATAT 60.202 41.667 0.00 0.00 0.00 1.63
2935 3190 3.131400 TGCCTGTACTACGTTGCATGATA 59.869 43.478 0.00 0.00 0.00 2.15
2936 3191 2.093711 TGCCTGTACTACGTTGCATGAT 60.094 45.455 0.00 0.00 0.00 2.45
2937 3192 1.273886 TGCCTGTACTACGTTGCATGA 59.726 47.619 0.00 0.00 0.00 3.07
2938 3193 1.720805 TGCCTGTACTACGTTGCATG 58.279 50.000 0.00 0.00 0.00 4.06
2939 3194 2.465860 TTGCCTGTACTACGTTGCAT 57.534 45.000 0.00 0.00 0.00 3.96
2940 3195 2.242047 TTTGCCTGTACTACGTTGCA 57.758 45.000 0.00 0.00 0.00 4.08
2941 3196 3.723835 CGATTTTGCCTGTACTACGTTGC 60.724 47.826 0.00 0.00 0.00 4.17
2942 3197 3.676172 TCGATTTTGCCTGTACTACGTTG 59.324 43.478 0.00 0.00 0.00 4.10
2943 3198 3.676646 GTCGATTTTGCCTGTACTACGTT 59.323 43.478 0.00 0.00 0.00 3.99
2944 3199 3.248266 GTCGATTTTGCCTGTACTACGT 58.752 45.455 0.00 0.00 0.00 3.57
2945 3200 3.247442 TGTCGATTTTGCCTGTACTACG 58.753 45.455 0.00 0.00 0.00 3.51
2946 3201 3.617263 CCTGTCGATTTTGCCTGTACTAC 59.383 47.826 0.00 0.00 0.00 2.73
2947 3202 3.512329 TCCTGTCGATTTTGCCTGTACTA 59.488 43.478 0.00 0.00 0.00 1.82
2948 3203 2.301870 TCCTGTCGATTTTGCCTGTACT 59.698 45.455 0.00 0.00 0.00 2.73
2949 3204 2.695359 TCCTGTCGATTTTGCCTGTAC 58.305 47.619 0.00 0.00 0.00 2.90
2950 3205 3.410631 TTCCTGTCGATTTTGCCTGTA 57.589 42.857 0.00 0.00 0.00 2.74
2951 3206 2.270352 TTCCTGTCGATTTTGCCTGT 57.730 45.000 0.00 0.00 0.00 4.00
2952 3207 2.665519 CGTTTCCTGTCGATTTTGCCTG 60.666 50.000 0.00 0.00 0.00 4.85
2953 3208 1.535462 CGTTTCCTGTCGATTTTGCCT 59.465 47.619 0.00 0.00 0.00 4.75
2972 3227 6.978659 TGCTATCAGTTTAGAGTATGTTTCCG 59.021 38.462 0.00 0.00 0.00 4.30
2973 3228 8.718102 TTGCTATCAGTTTAGAGTATGTTTCC 57.282 34.615 0.00 0.00 0.00 3.13
2977 3232 9.726438 ACTTTTTGCTATCAGTTTAGAGTATGT 57.274 29.630 0.00 0.00 0.00 2.29
2980 3235 9.944376 ATGACTTTTTGCTATCAGTTTAGAGTA 57.056 29.630 0.00 0.00 0.00 2.59
2981 3236 8.854614 ATGACTTTTTGCTATCAGTTTAGAGT 57.145 30.769 0.00 0.00 0.00 3.24
2983 3238 9.944376 ACTATGACTTTTTGCTATCAGTTTAGA 57.056 29.630 0.00 0.00 0.00 2.10
3014 3279 7.448748 AAATTTGCTAGATAGTTTGAACCGT 57.551 32.000 0.00 0.00 0.00 4.83
3038 3303 4.204799 TCTAGCTCGTGGTATCTAGCAAA 58.795 43.478 0.00 0.00 37.44 3.68
3040 3305 3.487120 TCTAGCTCGTGGTATCTAGCA 57.513 47.619 0.00 0.00 37.44 3.49
3041 3306 5.008217 CCATATCTAGCTCGTGGTATCTAGC 59.992 48.000 0.00 0.00 35.16 3.42
3042 3307 5.529430 CCCATATCTAGCTCGTGGTATCTAG 59.471 48.000 0.00 0.00 0.00 2.43
3043 3308 5.191124 TCCCATATCTAGCTCGTGGTATCTA 59.809 44.000 0.00 0.00 0.00 1.98
3044 3309 4.018324 TCCCATATCTAGCTCGTGGTATCT 60.018 45.833 0.00 0.00 0.00 1.98
3045 3310 4.270834 TCCCATATCTAGCTCGTGGTATC 58.729 47.826 0.00 0.00 0.00 2.24
3046 3311 4.274147 CTCCCATATCTAGCTCGTGGTAT 58.726 47.826 0.00 0.00 0.00 2.73
3047 3312 3.561528 CCTCCCATATCTAGCTCGTGGTA 60.562 52.174 0.00 0.00 0.00 3.25
3048 3313 2.520069 CTCCCATATCTAGCTCGTGGT 58.480 52.381 0.00 0.00 0.00 4.16
3049 3314 1.821753 CCTCCCATATCTAGCTCGTGG 59.178 57.143 0.00 0.00 0.00 4.94
3050 3315 1.821753 CCCTCCCATATCTAGCTCGTG 59.178 57.143 0.00 0.00 0.00 4.35
3051 3316 1.893210 GCCCTCCCATATCTAGCTCGT 60.893 57.143 0.00 0.00 0.00 4.18
3052 3317 0.820871 GCCCTCCCATATCTAGCTCG 59.179 60.000 0.00 0.00 0.00 5.03
3053 3318 0.820871 CGCCCTCCCATATCTAGCTC 59.179 60.000 0.00 0.00 0.00 4.09
3102 3367 1.425428 CTTCGGCAATCGGAAGTGC 59.575 57.895 8.16 8.16 45.54 4.40
3104 3369 1.021390 CAGCTTCGGCAATCGGAAGT 61.021 55.000 12.12 0.72 45.75 3.01
3108 3373 3.204827 CCCAGCTTCGGCAATCGG 61.205 66.667 0.00 0.00 44.74 4.18
3118 3383 0.962489 CTCCGATATCGACCCAGCTT 59.038 55.000 26.32 0.00 43.02 3.74
3121 3411 1.210413 CGCTCCGATATCGACCCAG 59.790 63.158 26.32 15.71 43.02 4.45
3141 3431 1.402984 CCTTTGAGAGGTCCGACTTCG 60.403 57.143 5.10 0.00 40.95 3.79
3143 3433 1.896465 CTCCTTTGAGAGGTCCGACTT 59.104 52.381 0.00 0.00 46.39 3.01
3154 3444 3.449018 TCTCCGATTTCTCCTCCTTTGAG 59.551 47.826 0.00 0.00 38.42 3.02
3157 3447 4.033709 TCATCTCCGATTTCTCCTCCTTT 58.966 43.478 0.00 0.00 0.00 3.11
3158 3448 3.386402 GTCATCTCCGATTTCTCCTCCTT 59.614 47.826 0.00 0.00 0.00 3.36
3181 3471 1.739067 GACGCTTGAAGGGCTACATT 58.261 50.000 9.32 0.00 0.00 2.71
3234 3524 0.037605 GGTGGAGGTAACGAGTGTGG 60.038 60.000 0.00 0.00 46.39 4.17
3238 3528 2.643232 GGCGGTGGAGGTAACGAGT 61.643 63.158 0.00 0.00 46.39 4.18
3243 3533 2.686106 GGGAGGCGGTGGAGGTAA 60.686 66.667 0.00 0.00 0.00 2.85
3312 3603 1.519455 GAAGACAGATGCCCGACGG 60.519 63.158 6.99 6.99 0.00 4.79
3334 3625 4.501071 GTGTACCATTGGTCACTTACGAT 58.499 43.478 12.68 0.00 37.09 3.73
3336 3627 2.997986 GGTGTACCATTGGTCACTTACG 59.002 50.000 24.70 0.00 37.09 3.18
3337 3628 3.244630 TGGGTGTACCATTGGTCACTTAC 60.245 47.826 24.70 14.89 46.80 2.34
3340 3631 1.440618 TGGGTGTACCATTGGTCACT 58.559 50.000 24.70 4.22 46.80 3.41
3366 3657 2.941415 GCCCAACGAGGATGAATGTCTT 60.941 50.000 0.00 0.00 41.22 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.