Multiple sequence alignment - TraesCS2B01G231300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G231300 chr2B 100.000 2368 0 0 1 2368 227310604 227312971 0.000000e+00 4373.0
1 TraesCS2B01G231300 chr2D 83.849 873 98 14 1531 2368 12663659 12662795 0.000000e+00 791.0
2 TraesCS2B01G231300 chr3D 88.612 641 58 11 1 636 31964183 31964813 0.000000e+00 765.0
3 TraesCS2B01G231300 chr3D 85.983 585 49 20 163 731 31805268 31804701 1.570000e-166 595.0
4 TraesCS2B01G231300 chr3D 92.857 196 11 2 1287 1479 31965633 31965828 4.980000e-72 281.0
5 TraesCS2B01G231300 chr3D 89.950 199 17 2 1287 1482 31803748 31803550 1.090000e-63 254.0
6 TraesCS2B01G231300 chr3D 83.945 218 14 11 733 946 31848785 31848585 3.110000e-44 189.0
7 TraesCS2B01G231300 chr3D 84.103 195 24 1 2181 2368 31753881 31753687 5.200000e-42 182.0
8 TraesCS2B01G231300 chr3D 83.173 208 20 7 1907 2111 31754389 31754194 2.420000e-40 176.0
9 TraesCS2B01G231300 chr3D 93.151 73 5 0 1771 1843 31754602 31754530 8.950000e-20 108.0
10 TraesCS2B01G231300 chr3D 87.838 74 7 1 1 72 31805488 31805415 4.190000e-13 86.1
11 TraesCS2B01G231300 chr3B 85.000 800 63 25 163 954 54504151 54503401 0.000000e+00 760.0
12 TraesCS2B01G231300 chr3B 83.892 776 80 22 177 937 53962589 53961844 0.000000e+00 699.0
13 TraesCS2B01G231300 chr3B 85.774 478 39 18 163 622 54326648 54326182 1.650000e-131 479.0
14 TraesCS2B01G231300 chr3B 89.950 199 17 2 1287 1482 54502626 54502428 1.090000e-63 254.0
15 TraesCS2B01G231300 chr3B 89.447 199 18 2 1287 1482 53960925 53960727 5.050000e-62 248.0
16 TraesCS2B01G231300 chr3B 91.667 72 6 0 1 72 54326866 54326795 1.500000e-17 100.0
17 TraesCS2B01G231300 chr3B 89.610 77 5 2 1907 1980 53939927 53939851 6.970000e-16 95.3
18 TraesCS2B01G231300 chr3B 87.013 77 7 2 1907 1980 53911013 53910937 1.510000e-12 84.2
19 TraesCS2B01G231300 chr3B 87.500 64 8 0 1 64 54504304 54504241 9.080000e-10 75.0
20 TraesCS2B01G231300 chr2A 87.698 252 21 5 701 948 528106483 528106728 3.850000e-73 285.0
21 TraesCS2B01G231300 chr2A 92.857 196 11 2 1287 1479 528107517 528107712 4.980000e-72 281.0
22 TraesCS2B01G231300 chr2A 83.562 219 14 11 733 946 528102922 528103123 4.020000e-43 185.0
23 TraesCS2B01G231300 chr2A 96.364 55 2 0 1 55 528105883 528105937 9.010000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G231300 chr2B 227310604 227312971 2367 False 4373.00 4373 100.000000 1 2368 1 chr2B.!!$F1 2367
1 TraesCS2B01G231300 chr2D 12662795 12663659 864 True 791.00 791 83.849000 1531 2368 1 chr2D.!!$R1 837
2 TraesCS2B01G231300 chr3D 31964183 31965828 1645 False 523.00 765 90.734500 1 1479 2 chr3D.!!$F1 1478
3 TraesCS2B01G231300 chr3D 31803550 31805488 1938 True 311.70 595 87.923667 1 1482 3 chr3D.!!$R3 1481
4 TraesCS2B01G231300 chr3B 53960727 53962589 1862 True 473.50 699 86.669500 177 1482 2 chr3B.!!$R3 1305
5 TraesCS2B01G231300 chr3B 54502428 54504304 1876 True 363.00 760 87.483333 1 1482 3 chr3B.!!$R5 1481
6 TraesCS2B01G231300 chr3B 54326182 54326866 684 True 289.50 479 88.720500 1 622 2 chr3B.!!$R4 621
7 TraesCS2B01G231300 chr2A 528102922 528107712 4790 False 210.65 285 90.120250 1 1479 4 chr2A.!!$F1 1478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 3519 0.464916 ATGATCTGGCGCTGCATGAA 60.465 50.0 7.64 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 5761 0.388134 GAGCAGCTGCATGGTTGTTG 60.388 55.0 38.24 0.0 45.16 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 3108 5.762218 ACTCAAATCTTCTCAACACTGAAGG 59.238 40.000 0.00 0.00 39.85 3.46
124 3114 4.635765 TCTTCTCAACACTGAAGGTTTGTG 59.364 41.667 0.00 0.00 39.85 3.33
141 3134 7.382898 AGGTTTGTGTGTTTGTTTATTTGTCT 58.617 30.769 0.00 0.00 0.00 3.41
165 3158 1.141657 GCCTGAATGAGGGAGTATGCA 59.858 52.381 0.00 0.00 43.07 3.96
195 3215 9.745018 TTGAGAAGATTTGAGTGGAAATTCTAT 57.255 29.630 0.00 0.00 0.00 1.98
299 3363 1.001120 TCCCCTCGCAGTATGACCA 59.999 57.895 0.00 0.00 39.69 4.02
378 3465 2.171659 TGCTTTGGAGGTCAACACACTA 59.828 45.455 0.00 0.00 34.67 2.74
432 3519 0.464916 ATGATCTGGCGCTGCATGAA 60.465 50.000 7.64 0.00 0.00 2.57
449 3536 2.986050 TGAACTGGAGAAGGTAGGGTT 58.014 47.619 0.00 0.00 0.00 4.11
453 3540 4.076175 ACTGGAGAAGGTAGGGTTATGT 57.924 45.455 0.00 0.00 0.00 2.29
615 3708 4.764679 ATGCACACTGAAAAAGCGAATA 57.235 36.364 0.00 0.00 0.00 1.75
619 3712 6.257423 TGCACACTGAAAAAGCGAATATATG 58.743 36.000 0.00 0.00 0.00 1.78
622 3715 6.624917 CACACTGAAAAAGCGAATATATGTCG 59.375 38.462 10.88 10.88 41.46 4.35
653 3746 8.400947 CGAATTCTGTTTTTACTGATCATGGAT 58.599 33.333 3.52 0.00 0.00 3.41
658 3751 9.513906 TCTGTTTTTACTGATCATGGATAACAA 57.486 29.630 0.00 0.00 0.00 2.83
664 3757 8.523915 TTACTGATCATGGATAACAAATGCTT 57.476 30.769 0.00 0.00 0.00 3.91
683 3776 4.141287 GCTTAGAGAGGCAGTATCAGAGA 58.859 47.826 0.00 0.00 0.00 3.10
684 3777 4.216257 GCTTAGAGAGGCAGTATCAGAGAG 59.784 50.000 0.00 0.00 0.00 3.20
721 3814 6.854496 TCTTTACAAGCGAAAACATGTAGT 57.146 33.333 0.00 0.00 30.64 2.73
822 3916 4.600547 TCCCTCATTCAATCCAGATGCTAT 59.399 41.667 0.00 0.00 0.00 2.97
851 3952 7.037514 AGGCAGTATTCCCCCTAAATTAGTATC 60.038 40.741 0.00 0.00 0.00 2.24
858 3959 6.699688 TCCCCCTAAATTAGTATCAGGAAGA 58.300 40.000 0.00 0.00 0.00 2.87
865 3966 4.902443 TTAGTATCAGGAAGAGTCAGCG 57.098 45.455 0.00 0.00 0.00 5.18
903 4006 5.880332 GTGGAACTCTAGACAAATATTGGCA 59.120 40.000 0.00 0.00 42.71 4.92
906 4009 6.258947 GGAACTCTAGACAAATATTGGCACTC 59.741 42.308 0.00 0.00 42.71 3.51
907 4010 5.675538 ACTCTAGACAAATATTGGCACTCC 58.324 41.667 0.00 0.00 42.71 3.85
908 4011 5.036117 TCTAGACAAATATTGGCACTCCC 57.964 43.478 0.00 0.00 42.71 4.30
910 4013 3.356290 AGACAAATATTGGCACTCCCAC 58.644 45.455 0.00 0.00 45.34 4.61
911 4014 3.010584 AGACAAATATTGGCACTCCCACT 59.989 43.478 0.00 0.00 45.34 4.00
913 4016 4.159557 ACAAATATTGGCACTCCCACTTT 58.840 39.130 0.00 0.00 45.34 2.66
914 4017 4.592778 ACAAATATTGGCACTCCCACTTTT 59.407 37.500 0.00 0.00 45.34 2.27
915 4018 5.777732 ACAAATATTGGCACTCCCACTTTTA 59.222 36.000 0.00 0.00 45.34 1.52
916 4019 6.071391 ACAAATATTGGCACTCCCACTTTTAG 60.071 38.462 0.00 0.00 45.34 1.85
986 4583 2.445145 TCCCAAAGGAAGACCATCAACA 59.555 45.455 0.00 0.00 40.08 3.33
996 4593 5.490139 AAGACCATCAACATCTTTATGCG 57.510 39.130 0.00 0.00 36.50 4.73
1005 4602 5.877564 TCAACATCTTTATGCGGTAATGACA 59.122 36.000 0.00 0.00 36.50 3.58
1033 4630 7.809238 TGTGAGAAATATTCTGGATGAGGAAT 58.191 34.615 0.00 0.00 40.87 3.01
1049 4646 5.891198 TGAGGAATGGAAAAGGATGAAAGA 58.109 37.500 0.00 0.00 0.00 2.52
1051 4648 6.955851 TGAGGAATGGAAAAGGATGAAAGATT 59.044 34.615 0.00 0.00 0.00 2.40
1068 4668 5.382618 AAGATTCATTGCAAGACCTCAAC 57.617 39.130 4.94 0.00 0.00 3.18
1079 4679 0.972883 GACCTCAACAGAGAGCAGGT 59.027 55.000 0.00 0.00 40.33 4.00
1083 4683 3.584848 ACCTCAACAGAGAGCAGGTTAAT 59.415 43.478 0.00 0.00 33.41 1.40
1085 4685 5.248477 ACCTCAACAGAGAGCAGGTTAATAA 59.752 40.000 0.00 0.00 33.41 1.40
1113 4713 2.744494 GCTCCAAGAGAATCGCCAAGAT 60.744 50.000 0.00 0.00 42.67 2.40
1128 4728 4.440525 CGCCAAGATTTGATGCAGGTAAAT 60.441 41.667 0.00 0.00 0.00 1.40
1140 4741 6.609212 TGATGCAGGTAAATTAAAAGCCCATA 59.391 34.615 0.00 0.00 0.00 2.74
1141 4742 6.215495 TGCAGGTAAATTAAAAGCCCATAC 57.785 37.500 0.00 0.00 0.00 2.39
1142 4743 5.955355 TGCAGGTAAATTAAAAGCCCATACT 59.045 36.000 0.00 0.00 0.00 2.12
1188 4800 8.153221 TCTATTTGGGAGGAGTTACATTGTTA 57.847 34.615 0.00 0.00 0.00 2.41
1192 4804 6.938698 TGGGAGGAGTTACATTGTTACTAA 57.061 37.500 8.34 0.00 0.00 2.24
1194 4806 7.747690 TGGGAGGAGTTACATTGTTACTAAAA 58.252 34.615 8.34 0.00 0.00 1.52
1232 4855 5.779529 ATGATCATAATGTGCAGGGTTTC 57.220 39.130 6.36 0.00 0.00 2.78
1271 4895 0.814457 GCGGCACCATTGTTGGAATA 59.186 50.000 0.00 0.00 46.92 1.75
1279 4903 5.408299 GCACCATTGTTGGAATAAAAAGGAC 59.592 40.000 0.00 0.00 46.92 3.85
1284 4908 2.823747 GTTGGAATAAAAAGGACGGGCT 59.176 45.455 0.00 0.00 0.00 5.19
1285 4909 3.163616 TGGAATAAAAAGGACGGGCTT 57.836 42.857 0.00 0.00 0.00 4.35
1317 5006 1.271856 TGGTCTCGTATTGGCAGGAA 58.728 50.000 0.00 0.00 0.00 3.36
1333 5022 3.127721 GCAGGAAGAAATACAGAAGCCAC 59.872 47.826 0.00 0.00 0.00 5.01
1350 5039 0.376852 CACCATGGCGTCCATTTACG 59.623 55.000 13.04 0.00 42.23 3.18
1363 5052 5.657474 GTCCATTTACGACTATTCAGGTCA 58.343 41.667 0.00 0.00 33.73 4.02
1371 5060 5.411781 ACGACTATTCAGGTCAATGAAGAC 58.588 41.667 0.00 0.00 42.20 3.01
1430 5119 8.239314 TCATGCACTTACATTCTCTGAATTTTC 58.761 33.333 0.00 0.00 0.00 2.29
1433 5122 7.445096 TGCACTTACATTCTCTGAATTTTCTGA 59.555 33.333 0.00 0.82 34.58 3.27
1434 5123 8.292448 GCACTTACATTCTCTGAATTTTCTGAA 58.708 33.333 2.22 0.00 35.23 3.02
1435 5124 9.604626 CACTTACATTCTCTGAATTTTCTGAAC 57.395 33.333 0.00 0.00 35.23 3.18
1439 5128 8.862550 ACATTCTCTGAATTTTCTGAACAAAC 57.137 30.769 0.00 0.00 35.23 2.93
1440 5129 8.469200 ACATTCTCTGAATTTTCTGAACAAACA 58.531 29.630 0.00 0.00 35.23 2.83
1442 5131 7.630242 TCTCTGAATTTTCTGAACAAACACT 57.370 32.000 0.00 0.00 35.23 3.55
1443 5132 8.731275 TCTCTGAATTTTCTGAACAAACACTA 57.269 30.769 0.00 0.00 35.23 2.74
1479 5171 6.662755 ACAATTGCAGGAGGTTATAGATGAA 58.337 36.000 5.05 0.00 0.00 2.57
1482 5174 8.469200 CAATTGCAGGAGGTTATAGATGAAAAA 58.531 33.333 0.00 0.00 0.00 1.94
1483 5175 8.773033 ATTGCAGGAGGTTATAGATGAAAAAT 57.227 30.769 0.00 0.00 0.00 1.82
1484 5176 9.866655 ATTGCAGGAGGTTATAGATGAAAAATA 57.133 29.630 0.00 0.00 0.00 1.40
1485 5177 9.693739 TTGCAGGAGGTTATAGATGAAAAATAA 57.306 29.630 0.00 0.00 0.00 1.40
1486 5178 9.342308 TGCAGGAGGTTATAGATGAAAAATAAG 57.658 33.333 0.00 0.00 0.00 1.73
1487 5179 9.343539 GCAGGAGGTTATAGATGAAAAATAAGT 57.656 33.333 0.00 0.00 0.00 2.24
1580 5275 6.882610 ATACATTTGCTCAGACTGAAACAA 57.117 33.333 13.83 13.83 0.00 2.83
1581 5276 4.925068 ACATTTGCTCAGACTGAAACAAC 58.075 39.130 16.36 2.36 0.00 3.32
1583 5278 4.621068 TTTGCTCAGACTGAAACAACTG 57.379 40.909 16.36 1.63 0.00 3.16
1590 5285 4.631377 TCAGACTGAAACAACTGTGACTTG 59.369 41.667 1.64 0.00 0.00 3.16
1613 5308 6.074648 TGGGACAAAACAAGAATGGACTATT 58.925 36.000 0.00 0.00 31.92 1.73
1629 5324 7.366847 TGGACTATTCTATCAAAAGAGAGGG 57.633 40.000 0.00 0.00 0.00 4.30
1630 5325 6.183361 TGGACTATTCTATCAAAAGAGAGGGC 60.183 42.308 0.00 0.00 0.00 5.19
1631 5326 6.183361 GGACTATTCTATCAAAAGAGAGGGCA 60.183 42.308 0.00 0.00 0.00 5.36
1632 5327 6.587273 ACTATTCTATCAAAAGAGAGGGCAC 58.413 40.000 0.00 0.00 0.00 5.01
1633 5328 5.707066 ATTCTATCAAAAGAGAGGGCACT 57.293 39.130 0.00 0.00 0.00 4.40
1634 5329 5.505181 TTCTATCAAAAGAGAGGGCACTT 57.495 39.130 0.00 0.00 0.00 3.16
1643 5338 0.111061 AGAGGGCACTTCAACATGCA 59.889 50.000 0.00 0.00 43.93 3.96
1644 5339 0.961019 GAGGGCACTTCAACATGCAA 59.039 50.000 0.00 0.00 43.93 4.08
1652 5347 4.320421 GCACTTCAACATGCAACACTATGA 60.320 41.667 0.00 0.00 41.65 2.15
1690 5400 4.946157 CAGGAAAAGCTCAGGTAATCACAT 59.054 41.667 0.00 0.00 0.00 3.21
1700 5416 8.216423 AGCTCAGGTAATCACATCTTAATGATT 58.784 33.333 7.10 7.10 45.33 2.57
1710 5426 8.498054 TCACATCTTAATGATTTCAGAACTCC 57.502 34.615 0.00 0.00 36.67 3.85
1713 5429 8.324306 ACATCTTAATGATTTCAGAACTCCAGA 58.676 33.333 0.00 0.00 36.67 3.86
1714 5430 8.828644 CATCTTAATGATTTCAGAACTCCAGAG 58.171 37.037 0.00 0.00 34.61 3.35
1715 5431 7.911651 TCTTAATGATTTCAGAACTCCAGAGT 58.088 34.615 0.00 0.00 44.94 3.24
1757 5473 6.904626 AGAATTCTAGAGTTACCATGGCAAT 58.095 36.000 13.04 0.00 0.00 3.56
1758 5474 7.349598 AGAATTCTAGAGTTACCATGGCAATT 58.650 34.615 13.04 0.93 0.00 2.32
1767 5484 5.011533 AGTTACCATGGCAATTTAAACTGCA 59.988 36.000 21.79 9.56 40.46 4.41
1777 5494 5.469479 CAATTTAAACTGCACCCTGGTAAG 58.531 41.667 0.00 0.00 0.00 2.34
1787 5504 3.482436 CACCCTGGTAAGCTAAACAACA 58.518 45.455 0.00 0.00 0.00 3.33
1794 5511 6.249035 TGGTAAGCTAAACAACACAATAGC 57.751 37.500 0.00 0.00 40.77 2.97
1800 5517 5.582665 AGCTAAACAACACAATAGCTCTAGC 59.417 40.000 0.00 0.00 45.95 3.42
1804 5521 2.586258 ACACAATAGCTCTAGCACCG 57.414 50.000 4.54 0.00 45.16 4.94
1831 5548 6.498538 AGGTTGGAAATATTGACACCCATAA 58.501 36.000 8.34 0.00 0.00 1.90
1833 5550 7.124147 AGGTTGGAAATATTGACACCCATAAAG 59.876 37.037 8.34 0.00 0.00 1.85
1916 5634 6.201226 TCAAATGTAGTTGCACAAAAGACA 57.799 33.333 0.00 0.00 30.84 3.41
1921 5639 3.591196 AGTTGCACAAAAGACAAAGCA 57.409 38.095 0.00 0.00 0.00 3.91
1933 5651 7.496591 ACAAAAGACAAAGCAATCATTCAACAT 59.503 29.630 0.00 0.00 0.00 2.71
1935 5653 9.545105 AAAAGACAAAGCAATCATTCAACATAA 57.455 25.926 0.00 0.00 0.00 1.90
1937 5655 9.545105 AAGACAAAGCAATCATTCAACATAAAA 57.455 25.926 0.00 0.00 0.00 1.52
1939 5657 8.891671 ACAAAGCAATCATTCAACATAAAACT 57.108 26.923 0.00 0.00 0.00 2.66
1940 5658 9.979578 ACAAAGCAATCATTCAACATAAAACTA 57.020 25.926 0.00 0.00 0.00 2.24
1942 5660 8.693542 AAGCAATCATTCAACATAAAACTAGC 57.306 30.769 0.00 0.00 0.00 3.42
1943 5661 7.829725 AGCAATCATTCAACATAAAACTAGCA 58.170 30.769 0.00 0.00 0.00 3.49
1944 5662 8.306038 AGCAATCATTCAACATAAAACTAGCAA 58.694 29.630 0.00 0.00 0.00 3.91
1945 5663 9.090692 GCAATCATTCAACATAAAACTAGCAAT 57.909 29.630 0.00 0.00 0.00 3.56
1966 5684 5.902613 ATGTTGTTCACATAACCATGAGG 57.097 39.130 0.00 0.00 45.00 3.86
1967 5685 3.505680 TGTTGTTCACATAACCATGAGGC 59.494 43.478 0.00 0.00 39.06 4.70
1968 5686 2.722094 TGTTCACATAACCATGAGGCC 58.278 47.619 0.00 0.00 39.06 5.19
1987 5705 5.716979 AGGCCTTGACATCTACCTAGATAA 58.283 41.667 0.00 0.00 40.91 1.75
2007 5725 3.067684 AGGGGTACACTAACAATGCAC 57.932 47.619 0.00 0.00 0.00 4.57
2032 5750 4.134563 GCAAGTTAACTCACCCTCAAAGA 58.865 43.478 8.95 0.00 0.00 2.52
2038 5761 0.676151 CTCACCCTCAAAGAGCTGGC 60.676 60.000 0.00 0.00 0.00 4.85
2072 5795 4.991056 CAGCTGCTCTTTACTTGTCAGTTA 59.009 41.667 0.00 0.00 34.06 2.24
2076 5799 6.401581 GCTGCTCTTTACTTGTCAGTTATCAC 60.402 42.308 0.00 0.00 34.06 3.06
2078 5801 5.932303 GCTCTTTACTTGTCAGTTATCACCA 59.068 40.000 0.00 0.00 34.06 4.17
2093 5816 2.524306 TCACCACCACAAATCCAATCC 58.476 47.619 0.00 0.00 0.00 3.01
2095 5818 1.148867 ACCACCACAAATCCAATCCCA 59.851 47.619 0.00 0.00 0.00 4.37
2107 5830 1.138859 CCAATCCCACGCTGTAGATCA 59.861 52.381 0.00 0.00 0.00 2.92
2112 5835 2.037902 TCCCACGCTGTAGATCAACAAA 59.962 45.455 0.00 0.00 0.00 2.83
2122 5845 2.233271 AGATCAACAAACCCTGCTGTG 58.767 47.619 0.00 0.00 0.00 3.66
2142 5865 3.004106 GTGGATTCATAAGCACCAGCATC 59.996 47.826 0.00 0.00 45.49 3.91
2149 5872 2.603075 AAGCACCAGCATCCCTAAAA 57.397 45.000 0.00 0.00 45.49 1.52
2179 5904 4.216411 TCCATGGTAGGTTAAGTTGCTC 57.784 45.455 12.58 0.00 0.00 4.26
2180 5905 3.054655 TCCATGGTAGGTTAAGTTGCTCC 60.055 47.826 12.58 0.00 0.00 4.70
2184 5909 4.993028 TGGTAGGTTAAGTTGCTCCATTT 58.007 39.130 0.00 0.00 0.00 2.32
2186 5911 6.544650 TGGTAGGTTAAGTTGCTCCATTTTA 58.455 36.000 0.00 0.00 0.00 1.52
2192 5917 8.282256 AGGTTAAGTTGCTCCATTTTATAGGAT 58.718 33.333 0.00 0.00 32.53 3.24
2195 5920 9.693739 TTAAGTTGCTCCATTTTATAGGATTCA 57.306 29.630 0.00 0.00 32.53 2.57
2196 5921 7.814264 AGTTGCTCCATTTTATAGGATTCAG 57.186 36.000 0.00 0.00 32.53 3.02
2202 5927 7.174080 GCTCCATTTTATAGGATTCAGAACCTC 59.826 40.741 7.37 0.00 37.68 3.85
2206 5931 9.050601 CATTTTATAGGATTCAGAACCTCACTC 57.949 37.037 7.37 0.00 37.68 3.51
2214 5939 0.892063 AGAACCTCACTCGAGCCTTC 59.108 55.000 13.61 6.22 38.00 3.46
2232 5957 5.012561 AGCCTTCGAATATTAAGCATCCTCT 59.987 40.000 0.00 0.00 0.00 3.69
2249 5976 6.372659 GCATCCTCTCAGAAATGTAAGTTCAA 59.627 38.462 0.01 0.00 44.66 2.69
2266 5993 7.954788 AAGTTCAACTGACTCTAACTTCATC 57.045 36.000 0.00 0.00 35.98 2.92
2281 6008 4.748892 ACTTCATCGTCCATCTAACTGTG 58.251 43.478 0.00 0.00 0.00 3.66
2283 6010 5.047306 ACTTCATCGTCCATCTAACTGTGAA 60.047 40.000 0.00 0.00 0.00 3.18
2284 6011 5.598416 TCATCGTCCATCTAACTGTGAAT 57.402 39.130 0.00 0.00 0.00 2.57
2291 6018 6.073276 CGTCCATCTAACTGTGAATTTGTGAA 60.073 38.462 0.00 0.00 0.00 3.18
2296 6023 9.734620 CATCTAACTGTGAATTTGTGAAAGAAA 57.265 29.630 0.00 0.00 31.90 2.52
2303 6030 7.095910 TGTGAATTTGTGAAAGAAAGCAGAAA 58.904 30.769 0.00 0.00 30.39 2.52
2304 6031 7.765360 TGTGAATTTGTGAAAGAAAGCAGAAAT 59.235 29.630 0.00 0.00 38.95 2.17
2305 6032 8.060090 GTGAATTTGTGAAAGAAAGCAGAAATG 58.940 33.333 0.00 0.00 37.83 2.32
2315 6042 4.464951 AGAAAGCAGAAATGGCAATCATCA 59.535 37.500 0.00 0.00 34.44 3.07
2328 6055 4.823442 GGCAATCATCATCAAGACATGGTA 59.177 41.667 0.00 0.00 0.00 3.25
2330 6057 6.656270 GGCAATCATCATCAAGACATGGTATA 59.344 38.462 0.00 0.00 0.00 1.47
2356 6083 5.299028 TCAATTTTGCAGAGTCAGCACTTAA 59.701 36.000 10.07 5.65 42.54 1.85
2362 6089 3.583806 CAGAGTCAGCACTTAACCTCAG 58.416 50.000 0.00 0.00 30.63 3.35
2365 6092 2.300437 AGTCAGCACTTAACCTCAGGAC 59.700 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 3067 9.994432 AGATTTGAGTTAAAAATTCTAGCATCG 57.006 29.630 0.00 0.00 0.00 3.84
118 3108 9.349145 AGTAGACAAATAAACAAACACACAAAC 57.651 29.630 0.00 0.00 0.00 2.93
124 3114 6.636850 CAGGCAGTAGACAAATAAACAAACAC 59.363 38.462 0.00 0.00 0.00 3.32
141 3134 2.254152 ACTCCCTCATTCAGGCAGTA 57.746 50.000 0.00 0.00 41.80 2.74
165 3158 5.296151 TCCACTCAAATCTTCTCAACACT 57.704 39.130 0.00 0.00 0.00 3.55
355 3442 1.340502 TGTGTTGACCTCCAAAGCACA 60.341 47.619 0.00 0.00 38.57 4.57
378 3465 0.252421 TCTCTCCACCTGCCATGTCT 60.252 55.000 0.00 0.00 0.00 3.41
432 3519 4.076175 ACATAACCCTACCTTCTCCAGT 57.924 45.455 0.00 0.00 0.00 4.00
571 3659 6.985188 TTCAGCATTACCATCTGTAACTTC 57.015 37.500 0.00 0.00 42.06 3.01
615 3708 3.995199 ACAGAATTCGGCATCGACATAT 58.005 40.909 5.43 0.00 45.92 1.78
619 3712 3.471495 AAAACAGAATTCGGCATCGAC 57.529 42.857 5.43 0.00 45.92 4.20
622 3715 5.938322 TCAGTAAAAACAGAATTCGGCATC 58.062 37.500 5.43 0.00 0.00 3.91
653 3746 5.165961 ACTGCCTCTCTAAGCATTTGTTA 57.834 39.130 0.00 0.00 38.56 2.41
658 3751 4.898265 TCTGATACTGCCTCTCTAAGCATT 59.102 41.667 0.00 0.00 38.56 3.56
664 3757 3.137360 TGCTCTCTGATACTGCCTCTCTA 59.863 47.826 0.00 0.00 0.00 2.43
698 3791 7.129622 CAACTACATGTTTTCGCTTGTAAAGA 58.870 34.615 2.30 0.00 41.20 2.52
721 3814 6.642707 ATTCGACATTGTTTTAACTCCCAA 57.357 33.333 0.00 0.00 0.00 4.12
796 3890 4.202398 GCATCTGGATTGAATGAGGGACTA 60.202 45.833 0.00 0.00 41.55 2.59
822 3916 2.579624 TAGGGGGAATACTGCCTGAA 57.420 50.000 0.00 0.00 32.44 3.02
851 3952 3.443037 CATCTTACGCTGACTCTTCCTG 58.557 50.000 0.00 0.00 0.00 3.86
858 3959 3.006967 ACTGAAACCATCTTACGCTGACT 59.993 43.478 0.00 0.00 0.00 3.41
865 3966 5.552178 AGAGTTCCACTGAAACCATCTTAC 58.448 41.667 0.00 0.00 30.79 2.34
873 3975 8.779354 ATATTTGTCTAGAGTTCCACTGAAAC 57.221 34.615 0.00 0.00 30.79 2.78
903 4006 5.364157 AGCGATAATCTCTAAAAGTGGGAGT 59.636 40.000 0.00 0.00 0.00 3.85
906 4009 6.513180 TGTAGCGATAATCTCTAAAAGTGGG 58.487 40.000 0.00 0.00 0.00 4.61
907 4010 8.594881 AATGTAGCGATAATCTCTAAAAGTGG 57.405 34.615 0.00 0.00 0.00 4.00
908 4011 9.249457 TGAATGTAGCGATAATCTCTAAAAGTG 57.751 33.333 0.00 0.00 0.00 3.16
937 4165 2.622436 CCCTGCTTGTAGTCTGTTAGC 58.378 52.381 0.00 0.00 0.00 3.09
970 4567 6.096001 GCATAAAGATGTTGATGGTCTTCCTT 59.904 38.462 2.25 0.00 35.30 3.36
986 4583 7.877612 TCACATATGTCATTACCGCATAAAGAT 59.122 33.333 5.07 0.00 0.00 2.40
1005 4602 9.109246 TCCTCATCCAGAATATTTCTCACATAT 57.891 33.333 0.00 0.00 38.11 1.78
1049 4646 4.401022 TCTGTTGAGGTCTTGCAATGAAT 58.599 39.130 0.00 0.00 0.00 2.57
1051 4648 3.071457 TCTCTGTTGAGGTCTTGCAATGA 59.929 43.478 0.00 0.00 40.58 2.57
1058 4655 1.622811 CCTGCTCTCTGTTGAGGTCTT 59.377 52.381 0.00 0.00 40.58 3.01
1068 4668 6.183360 GCTCTTTGTTATTAACCTGCTCTCTG 60.183 42.308 4.17 0.00 0.00 3.35
1079 4679 9.167311 GATTCTCTTGGAGCTCTTTGTTATTAA 57.833 33.333 14.64 0.00 0.00 1.40
1083 4683 5.171476 CGATTCTCTTGGAGCTCTTTGTTA 58.829 41.667 14.64 0.00 0.00 2.41
1085 4685 3.594134 CGATTCTCTTGGAGCTCTTTGT 58.406 45.455 14.64 0.00 0.00 2.83
1113 4713 6.169800 GGGCTTTTAATTTACCTGCATCAAA 58.830 36.000 0.00 0.00 0.00 2.69
1119 4719 6.465439 AGTATGGGCTTTTAATTTACCTGC 57.535 37.500 0.00 0.00 0.00 4.85
1148 4749 6.879458 TCCCAAATAGAGCAACTAGAACTTTC 59.121 38.462 0.00 0.00 34.35 2.62
1152 4753 5.104900 TCCTCCCAAATAGAGCAACTAGAAC 60.105 44.000 0.00 0.00 34.35 3.01
1166 4770 6.790319 AGTAACAATGTAACTCCTCCCAAAT 58.210 36.000 0.00 0.00 0.00 2.32
1215 4830 3.270027 TCTCGAAACCCTGCACATTATG 58.730 45.455 0.00 0.00 0.00 1.90
1232 4855 1.860950 CCACTAATCGGCATGTTCTCG 59.139 52.381 0.00 0.00 0.00 4.04
1260 4884 4.322424 GCCCGTCCTTTTTATTCCAACAAT 60.322 41.667 0.00 0.00 0.00 2.71
1271 4895 1.886542 CAGCTTAAGCCCGTCCTTTTT 59.113 47.619 23.71 0.00 43.38 1.94
1279 4903 1.244019 AACCTTGCAGCTTAAGCCCG 61.244 55.000 23.71 16.09 43.38 6.13
1284 4908 2.504367 GAGACCAACCTTGCAGCTTAA 58.496 47.619 0.00 0.00 0.00 1.85
1285 4909 1.608025 CGAGACCAACCTTGCAGCTTA 60.608 52.381 0.00 0.00 0.00 3.09
1317 5006 3.624777 CCATGGTGGCTTCTGTATTTCT 58.375 45.455 2.57 0.00 0.00 2.52
1333 5022 0.655733 GTCGTAAATGGACGCCATGG 59.344 55.000 7.63 7.63 44.40 3.66
1344 5033 8.258007 TCTTCATTGACCTGAATAGTCGTAAAT 58.742 33.333 0.00 0.00 37.04 1.40
1350 5039 5.651530 TCGTCTTCATTGACCTGAATAGTC 58.348 41.667 0.00 0.00 34.76 2.59
1352 5041 7.383572 CCTTATCGTCTTCATTGACCTGAATAG 59.616 40.741 0.00 0.00 34.76 1.73
1363 5052 6.323996 TGGATAGACACCTTATCGTCTTCATT 59.676 38.462 0.00 0.00 42.41 2.57
1371 5060 5.701290 GGGAAATTGGATAGACACCTTATCG 59.299 44.000 0.00 0.00 0.00 2.92
1410 5099 9.342308 TGTTCAGAAAATTCAGAGAATGTAAGT 57.658 29.630 0.00 0.00 0.00 2.24
1439 5128 4.744631 GCAATTGTCCAAAAACACCTAGTG 59.255 41.667 7.40 0.00 39.75 2.74
1440 5129 4.404073 TGCAATTGTCCAAAAACACCTAGT 59.596 37.500 7.40 0.00 0.00 2.57
1442 5131 4.202202 CCTGCAATTGTCCAAAAACACCTA 60.202 41.667 7.40 0.00 0.00 3.08
1443 5132 3.432046 CCTGCAATTGTCCAAAAACACCT 60.432 43.478 7.40 0.00 0.00 4.00
1510 5202 9.877178 ACATAAACATTTTGAACACCTAAAACA 57.123 25.926 0.00 0.00 0.00 2.83
1516 5208 9.912634 CATAAGACATAAACATTTTGAACACCT 57.087 29.630 0.00 0.00 0.00 4.00
1517 5209 9.691362 ACATAAGACATAAACATTTTGAACACC 57.309 29.630 0.00 0.00 0.00 4.16
1541 5233 9.979578 AGCAAATGTATAGAAAAATTGAACACA 57.020 25.926 0.00 0.00 0.00 3.72
1566 5261 4.437239 AGTCACAGTTGTTTCAGTCTGAG 58.563 43.478 2.12 0.00 0.00 3.35
1580 5275 3.080300 TGTTTTGTCCCAAGTCACAGT 57.920 42.857 0.00 0.00 0.00 3.55
1581 5276 3.694072 TCTTGTTTTGTCCCAAGTCACAG 59.306 43.478 0.00 0.00 39.25 3.66
1583 5278 4.712122 TTCTTGTTTTGTCCCAAGTCAC 57.288 40.909 0.00 0.00 39.25 3.67
1590 5285 6.590234 AATAGTCCATTCTTGTTTTGTCCC 57.410 37.500 0.00 0.00 0.00 4.46
1607 5302 6.704050 GTGCCCTCTCTTTTGATAGAATAGTC 59.296 42.308 0.00 0.00 0.00 2.59
1613 5308 4.532126 TGAAGTGCCCTCTCTTTTGATAGA 59.468 41.667 0.00 0.00 0.00 1.98
1629 5324 2.497107 AGTGTTGCATGTTGAAGTGC 57.503 45.000 0.00 0.00 41.61 4.40
1630 5325 5.149273 GTCATAGTGTTGCATGTTGAAGTG 58.851 41.667 0.00 0.00 0.00 3.16
1631 5326 4.083855 CGTCATAGTGTTGCATGTTGAAGT 60.084 41.667 0.00 0.00 0.00 3.01
1632 5327 4.152223 TCGTCATAGTGTTGCATGTTGAAG 59.848 41.667 0.00 0.00 0.00 3.02
1633 5328 4.061596 TCGTCATAGTGTTGCATGTTGAA 58.938 39.130 0.00 0.00 0.00 2.69
1634 5329 3.431912 GTCGTCATAGTGTTGCATGTTGA 59.568 43.478 0.00 0.00 0.00 3.18
1643 5338 9.249457 CTGAATATTATGTGTCGTCATAGTGTT 57.751 33.333 0.00 0.00 32.85 3.32
1644 5339 7.867909 CCTGAATATTATGTGTCGTCATAGTGT 59.132 37.037 0.00 0.00 32.85 3.55
1652 5347 6.823689 AGCTTTTCCTGAATATTATGTGTCGT 59.176 34.615 0.00 0.00 0.00 4.34
1690 5400 7.911651 ACTCTGGAGTTCTGAAATCATTAAGA 58.088 34.615 18.19 13.22 38.83 2.10
1710 5426 8.370493 TCTTCTTTTGTGATGAAGTAACTCTG 57.630 34.615 0.00 0.00 39.39 3.35
1748 5464 3.002102 GGTGCAGTTTAAATTGCCATGG 58.998 45.455 26.83 7.63 40.48 3.66
1757 5473 2.888414 GCTTACCAGGGTGCAGTTTAAA 59.112 45.455 0.06 0.00 0.00 1.52
1758 5474 2.107552 AGCTTACCAGGGTGCAGTTTAA 59.892 45.455 0.06 0.00 0.00 1.52
1767 5484 3.117813 TGTGTTGTTTAGCTTACCAGGGT 60.118 43.478 0.00 0.00 0.00 4.34
1777 5494 5.351465 TGCTAGAGCTATTGTGTTGTTTAGC 59.649 40.000 2.72 0.00 42.66 3.09
1787 5504 3.430929 CCTTTCGGTGCTAGAGCTATTGT 60.431 47.826 2.72 0.00 42.66 2.71
1794 5511 1.275291 TCCAACCTTTCGGTGCTAGAG 59.725 52.381 0.00 0.00 44.73 2.43
1800 5517 5.048364 TGTCAATATTTCCAACCTTTCGGTG 60.048 40.000 0.00 0.00 44.73 4.94
1804 5521 5.245075 TGGGTGTCAATATTTCCAACCTTTC 59.755 40.000 15.75 0.00 35.64 2.62
1831 5548 7.896383 TTCACCTATAATAATTTGCAGCCTT 57.104 32.000 0.00 0.00 0.00 4.35
1833 5550 7.716612 AGTTTCACCTATAATAATTTGCAGCC 58.283 34.615 0.00 0.00 0.00 4.85
1865 5583 6.754209 CAGGAGATTGTATCGCTATGTTATCC 59.246 42.308 0.00 0.00 0.00 2.59
1866 5584 6.754209 CCAGGAGATTGTATCGCTATGTTATC 59.246 42.308 0.00 0.00 0.00 1.75
1868 5586 5.538813 ACCAGGAGATTGTATCGCTATGTTA 59.461 40.000 0.00 0.00 0.00 2.41
1876 5594 5.586243 ACATTTGAACCAGGAGATTGTATCG 59.414 40.000 0.00 0.00 0.00 2.92
1916 5634 9.143631 GCTAGTTTTATGTTGAATGATTGCTTT 57.856 29.630 0.00 0.00 0.00 3.51
1942 5660 7.335055 GCCTCATGGTTATGTGAACAACATTG 61.335 42.308 0.00 0.00 41.83 2.82
1943 5661 5.336690 GCCTCATGGTTATGTGAACAACATT 60.337 40.000 0.00 0.00 41.83 2.71
1944 5662 4.158394 GCCTCATGGTTATGTGAACAACAT 59.842 41.667 0.00 0.00 43.13 2.71
1945 5663 3.505680 GCCTCATGGTTATGTGAACAACA 59.494 43.478 0.00 0.00 38.34 3.33
1966 5684 5.046950 CCCTTATCTAGGTAGATGTCAAGGC 60.047 48.000 15.81 0.00 40.97 4.35
1967 5685 5.482175 CCCCTTATCTAGGTAGATGTCAAGG 59.518 48.000 14.91 14.91 42.66 3.61
1968 5686 6.078664 ACCCCTTATCTAGGTAGATGTCAAG 58.921 44.000 9.40 5.67 42.66 3.02
1987 5705 2.373836 TGTGCATTGTTAGTGTACCCCT 59.626 45.455 0.00 0.00 32.16 4.79
1990 5708 2.161609 GCCTGTGCATTGTTAGTGTACC 59.838 50.000 0.00 0.00 37.47 3.34
1991 5709 2.811431 TGCCTGTGCATTGTTAGTGTAC 59.189 45.455 0.00 0.00 44.23 2.90
2007 5725 2.224523 TGAGGGTGAGTTAACTTGCCTG 60.225 50.000 21.19 0.00 0.00 4.85
2020 5738 1.376466 GCCAGCTCTTTGAGGGTGA 59.624 57.895 0.00 0.00 33.41 4.02
2032 5750 1.812686 CTGCATGGTTGTTGCCAGCT 61.813 55.000 0.00 0.00 42.47 4.24
2038 5761 0.388134 GAGCAGCTGCATGGTTGTTG 60.388 55.000 38.24 0.00 45.16 3.33
2046 5769 2.746362 GACAAGTAAAGAGCAGCTGCAT 59.254 45.455 38.24 24.58 45.16 3.96
2072 5795 3.099141 GGATTGGATTTGTGGTGGTGAT 58.901 45.455 0.00 0.00 0.00 3.06
2076 5799 1.550072 GTGGGATTGGATTTGTGGTGG 59.450 52.381 0.00 0.00 0.00 4.61
2078 5801 1.544724 CGTGGGATTGGATTTGTGGT 58.455 50.000 0.00 0.00 0.00 4.16
2093 5816 2.159627 GGTTTGTTGATCTACAGCGTGG 59.840 50.000 9.88 0.00 32.38 4.94
2095 5818 2.038557 AGGGTTTGTTGATCTACAGCGT 59.961 45.455 9.88 0.00 32.38 5.07
2107 5830 1.963515 GAATCCACAGCAGGGTTTGTT 59.036 47.619 0.00 0.00 30.40 2.83
2112 5835 2.684927 GCTTATGAATCCACAGCAGGGT 60.685 50.000 0.00 0.00 33.96 4.34
2122 5845 2.555757 GGATGCTGGTGCTTATGAATCC 59.444 50.000 0.00 0.00 40.48 3.01
2149 5872 8.102484 ACTTAACCTACCATGGATAGTGATTT 57.898 34.615 21.47 8.69 0.00 2.17
2152 5875 6.631766 GCAACTTAACCTACCATGGATAGTGA 60.632 42.308 21.47 2.01 0.00 3.41
2153 5876 5.527582 GCAACTTAACCTACCATGGATAGTG 59.472 44.000 21.47 12.01 0.00 2.74
2154 5877 5.428783 AGCAACTTAACCTACCATGGATAGT 59.571 40.000 21.47 9.17 0.00 2.12
2155 5878 5.930135 AGCAACTTAACCTACCATGGATAG 58.070 41.667 21.47 15.51 0.00 2.08
2156 5879 5.163237 GGAGCAACTTAACCTACCATGGATA 60.163 44.000 21.47 6.31 0.00 2.59
2157 5880 4.385310 GGAGCAACTTAACCTACCATGGAT 60.385 45.833 21.47 5.32 0.00 3.41
2159 5882 3.279434 GGAGCAACTTAACCTACCATGG 58.721 50.000 11.19 11.19 0.00 3.66
2161 5884 4.862641 ATGGAGCAACTTAACCTACCAT 57.137 40.909 0.00 0.00 32.96 3.55
2162 5885 4.650972 AATGGAGCAACTTAACCTACCA 57.349 40.909 0.00 0.00 0.00 3.25
2163 5886 5.977489 AAAATGGAGCAACTTAACCTACC 57.023 39.130 0.00 0.00 0.00 3.18
2164 5887 8.837389 CCTATAAAATGGAGCAACTTAACCTAC 58.163 37.037 0.00 0.00 0.00 3.18
2169 5894 9.693739 TGAATCCTATAAAATGGAGCAACTTAA 57.306 29.630 0.00 0.00 35.63 1.85
2172 5897 7.577303 TCTGAATCCTATAAAATGGAGCAACT 58.423 34.615 0.00 0.00 35.63 3.16
2179 5904 7.995488 AGTGAGGTTCTGAATCCTATAAAATGG 59.005 37.037 10.26 0.00 33.83 3.16
2180 5905 8.970859 AGTGAGGTTCTGAATCCTATAAAATG 57.029 34.615 10.26 0.00 33.83 2.32
2184 5909 6.127101 TCGAGTGAGGTTCTGAATCCTATAA 58.873 40.000 10.26 0.58 33.83 0.98
2186 5911 4.537751 TCGAGTGAGGTTCTGAATCCTAT 58.462 43.478 10.26 2.74 33.83 2.57
2192 5917 0.603569 GGCTCGAGTGAGGTTCTGAA 59.396 55.000 15.13 0.00 42.79 3.02
2195 5920 0.892063 GAAGGCTCGAGTGAGGTTCT 59.108 55.000 15.13 0.00 42.79 3.01
2196 5921 3.427309 GAAGGCTCGAGTGAGGTTC 57.573 57.895 15.13 6.47 42.79 3.62
2206 5931 4.092091 GGATGCTTAATATTCGAAGGCTCG 59.908 45.833 3.35 0.00 46.87 5.03
2214 5939 7.953158 TTTCTGAGAGGATGCTTAATATTCG 57.047 36.000 0.00 0.00 0.00 3.34
2232 5957 7.500992 AGAGTCAGTTGAACTTACATTTCTGA 58.499 34.615 11.73 0.00 0.00 3.27
2249 5976 4.079970 TGGACGATGAAGTTAGAGTCAGT 58.920 43.478 0.00 0.00 0.00 3.41
2266 5993 5.408299 TCACAAATTCACAGTTAGATGGACG 59.592 40.000 0.00 0.00 0.00 4.79
2281 6008 7.570161 CCATTTCTGCTTTCTTTCACAAATTC 58.430 34.615 0.00 0.00 0.00 2.17
2283 6010 5.467735 GCCATTTCTGCTTTCTTTCACAAAT 59.532 36.000 0.00 0.00 0.00 2.32
2284 6011 4.810491 GCCATTTCTGCTTTCTTTCACAAA 59.190 37.500 0.00 0.00 0.00 2.83
2291 6018 4.877378 TGATTGCCATTTCTGCTTTCTT 57.123 36.364 0.00 0.00 0.00 2.52
2296 6023 3.958147 TGATGATGATTGCCATTTCTGCT 59.042 39.130 0.00 0.00 35.17 4.24
2303 6030 4.280929 CCATGTCTTGATGATGATTGCCAT 59.719 41.667 0.00 0.00 38.43 4.40
2304 6031 3.634910 CCATGTCTTGATGATGATTGCCA 59.365 43.478 0.00 0.00 0.00 4.92
2305 6032 3.635373 ACCATGTCTTGATGATGATTGCC 59.365 43.478 0.00 0.00 0.00 4.52
2315 6042 9.754382 GCAAAATTGAATATACCATGTCTTGAT 57.246 29.630 0.00 0.00 0.00 2.57
2328 6055 6.152323 AGTGCTGACTCTGCAAAATTGAATAT 59.848 34.615 11.79 0.00 39.78 1.28
2330 6057 4.280174 AGTGCTGACTCTGCAAAATTGAAT 59.720 37.500 11.79 0.00 39.78 2.57
2333 6060 3.637998 AGTGCTGACTCTGCAAAATTG 57.362 42.857 11.79 0.00 39.78 2.32
2334 6061 5.507985 GGTTAAGTGCTGACTCTGCAAAATT 60.508 40.000 11.79 9.77 39.78 1.82
2338 6065 2.104792 AGGTTAAGTGCTGACTCTGCAA 59.895 45.455 11.79 0.00 39.78 4.08
2339 6066 1.694150 AGGTTAAGTGCTGACTCTGCA 59.306 47.619 6.51 6.51 36.05 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.