Multiple sequence alignment - TraesCS2B01G230700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G230700 chr2B 100.000 3673 0 0 1 3673 226705024 226708696 0.000000e+00 6783.0
1 TraesCS2B01G230700 chr2D 88.894 2026 96 54 754 2730 170607616 170605671 0.000000e+00 2375.0
2 TraesCS2B01G230700 chr2D 89.716 739 55 12 27 756 170609078 170608352 0.000000e+00 924.0
3 TraesCS2B01G230700 chr2D 86.624 157 16 2 600 756 170608313 170608162 6.310000e-38 169.0
4 TraesCS2B01G230700 chr2D 87.805 123 9 4 3451 3572 170604665 170604548 4.950000e-29 139.0
5 TraesCS2B01G230700 chr2D 79.695 197 24 8 3445 3636 650441923 650441738 1.070000e-25 128.0
6 TraesCS2B01G230700 chr2A 89.764 889 51 23 179 1048 179301973 179302840 0.000000e+00 1101.0
7 TraesCS2B01G230700 chr2A 86.099 669 41 22 1992 2638 179303609 179304247 0.000000e+00 673.0
8 TraesCS2B01G230700 chr2A 89.595 519 15 15 1148 1659 179303044 179303530 1.120000e-174 623.0
9 TraesCS2B01G230700 chr2A 80.282 142 21 6 3427 3563 619566637 619566776 2.330000e-17 100.0
10 TraesCS2B01G230700 chr2A 95.000 40 1 1 3024 3062 29966946 29966907 1.100000e-05 62.1
11 TraesCS2B01G230700 chr1D 90.741 162 8 5 1754 1913 470650551 470650395 3.720000e-50 209.0
12 TraesCS2B01G230700 chr1D 78.182 220 32 13 3445 3655 101570757 101570545 3.850000e-25 126.0
13 TraesCS2B01G230700 chr1D 78.808 151 22 8 3452 3598 326251082 326251226 3.910000e-15 93.5
14 TraesCS2B01G230700 chr1A 90.123 162 9 6 1754 1913 564348062 564347906 1.730000e-48 204.0
15 TraesCS2B01G230700 chr7B 92.000 100 8 0 1814 1913 119196697 119196598 1.380000e-29 141.0
16 TraesCS2B01G230700 chr7B 88.636 44 4 1 3016 3059 606190619 606190577 7.000000e-03 52.8
17 TraesCS2B01G230700 chr3D 81.319 182 24 7 3463 3639 566607715 566607539 4.950000e-29 139.0
18 TraesCS2B01G230700 chr3D 100.000 30 0 0 3033 3062 2270197 2270168 5.120000e-04 56.5
19 TraesCS2B01G230700 chr5B 82.069 145 16 8 3432 3571 28207113 28206974 8.340000e-22 115.0
20 TraesCS2B01G230700 chr5B 80.420 143 19 6 3466 3606 65197194 65197329 2.330000e-17 100.0
21 TraesCS2B01G230700 chr4D 77.561 205 34 7 3442 3645 474982698 474982505 3.000000e-21 113.0
22 TraesCS2B01G230700 chr4D 100.000 30 0 0 3614 3643 54059738 54059709 5.120000e-04 56.5
23 TraesCS2B01G230700 chr6B 80.833 120 20 3 2944 3060 712115806 712115687 1.400000e-14 91.6
24 TraesCS2B01G230700 chr4B 80.469 128 15 6 2944 3062 605330050 605329924 5.050000e-14 89.8
25 TraesCS2B01G230700 chr7D 91.071 56 5 0 3588 3643 529063641 529063696 3.930000e-10 76.8
26 TraesCS2B01G230700 chr5A 90.000 50 5 0 2841 2890 123568758 123568807 8.510000e-07 65.8
27 TraesCS2B01G230700 chr5A 100.000 29 0 0 3614 3642 42271977 42272005 2.000000e-03 54.7
28 TraesCS2B01G230700 chrUn 100.000 29 0 0 3614 3642 255357107 255357079 2.000000e-03 54.7
29 TraesCS2B01G230700 chr3B 100.000 29 0 0 3614 3642 756130654 756130682 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G230700 chr2B 226705024 226708696 3672 False 6783.00 6783 100.00000 1 3673 1 chr2B.!!$F1 3672
1 TraesCS2B01G230700 chr2D 170604548 170609078 4530 True 901.75 2375 88.25975 27 3572 4 chr2D.!!$R2 3545
2 TraesCS2B01G230700 chr2A 179301973 179304247 2274 False 799.00 1101 88.48600 179 2638 3 chr2A.!!$F2 2459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1587 0.025001 GTGCGTACGTATGCTTGCTG 59.975 55.0 33.14 4.28 38.96 4.41 F
979 1762 0.105593 CCTCCGTCCATCCATCACAG 59.894 60.0 0.00 0.00 0.00 3.66 F
1224 2115 0.105709 GGAAGGAGGAGGAGGAGGAG 60.106 65.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 2605 0.313043 CAAGACTTGCCACCTTGCAG 59.687 55.0 1.43 0.0 43.21 4.41 R
2387 3356 0.386838 GTTAATGCCCATCTGCTGCC 59.613 55.0 0.00 0.0 0.00 4.85 R
3205 4264 0.107410 AGGCACACCACTCACGAAAA 60.107 50.0 0.00 0.0 39.06 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.151070 CGGAATCAACAGATTTGTCAACG 58.849 43.478 0.00 0.00 36.23 4.10
23 24 4.475944 GGAATCAACAGATTTGTCAACGG 58.524 43.478 0.00 0.00 36.23 4.44
24 25 4.215399 GGAATCAACAGATTTGTCAACGGA 59.785 41.667 0.00 0.00 36.23 4.69
25 26 5.278266 GGAATCAACAGATTTGTCAACGGAA 60.278 40.000 0.00 0.00 36.23 4.30
26 27 5.964958 ATCAACAGATTTGTCAACGGAAT 57.035 34.783 0.00 0.00 36.23 3.01
27 28 5.356882 TCAACAGATTTGTCAACGGAATC 57.643 39.130 0.00 0.00 36.23 2.52
28 29 4.819088 TCAACAGATTTGTCAACGGAATCA 59.181 37.500 10.01 0.00 36.23 2.57
29 30 5.298026 TCAACAGATTTGTCAACGGAATCAA 59.702 36.000 10.01 0.00 36.23 2.57
30 31 5.766150 ACAGATTTGTCAACGGAATCAAA 57.234 34.783 10.01 0.00 33.34 2.69
31 32 6.142818 ACAGATTTGTCAACGGAATCAAAA 57.857 33.333 10.01 0.00 34.32 2.44
32 33 6.568869 ACAGATTTGTCAACGGAATCAAAAA 58.431 32.000 10.01 0.00 34.32 1.94
33 34 6.475402 ACAGATTTGTCAACGGAATCAAAAAC 59.525 34.615 10.01 0.00 34.32 2.43
49 50 2.331019 AAACCGTTGCCAACTCGCAC 62.331 55.000 5.96 0.00 38.83 5.34
76 77 5.185249 ACGATTACTTAGCAAGGAAGTCTCA 59.815 40.000 0.00 0.00 38.16 3.27
92 93 7.942341 AGGAAGTCTCAAACCACAAACAATATA 59.058 33.333 0.00 0.00 0.00 0.86
93 94 8.739972 GGAAGTCTCAAACCACAAACAATATAT 58.260 33.333 0.00 0.00 0.00 0.86
94 95 9.774742 GAAGTCTCAAACCACAAACAATATATC 57.225 33.333 0.00 0.00 0.00 1.63
95 96 8.862325 AGTCTCAAACCACAAACAATATATCA 57.138 30.769 0.00 0.00 0.00 2.15
96 97 9.295825 AGTCTCAAACCACAAACAATATATCAA 57.704 29.630 0.00 0.00 0.00 2.57
97 98 9.341899 GTCTCAAACCACAAACAATATATCAAC 57.658 33.333 0.00 0.00 0.00 3.18
98 99 8.519526 TCTCAAACCACAAACAATATATCAACC 58.480 33.333 0.00 0.00 0.00 3.77
99 100 7.607250 TCAAACCACAAACAATATATCAACCC 58.393 34.615 0.00 0.00 0.00 4.11
104 109 7.556275 ACCACAAACAATATATCAACCCTAGTG 59.444 37.037 0.00 0.00 0.00 2.74
133 138 3.741249 GAGAGGAGAGGAAACGGTTTTT 58.259 45.455 7.65 0.00 0.00 1.94
136 141 1.679153 GGAGAGGAAACGGTTTTTGCA 59.321 47.619 7.65 0.00 0.00 4.08
138 143 3.429684 GGAGAGGAAACGGTTTTTGCAAA 60.430 43.478 8.05 8.05 0.00 3.68
145 150 2.006169 ACGGTTTTTGCAAAAGCCAAG 58.994 42.857 39.52 30.91 45.99 3.61
148 153 2.746904 GGTTTTTGCAAAAGCCAAGTGT 59.253 40.909 37.92 0.00 45.30 3.55
152 157 0.102844 TGCAAAAGCCAAGTGTGAGC 59.897 50.000 0.00 0.00 0.00 4.26
219 224 6.745474 GCTGCCTATCCATCACCTAATTAAGT 60.745 42.308 0.00 0.00 0.00 2.24
220 225 6.769512 TGCCTATCCATCACCTAATTAAGTC 58.230 40.000 0.00 0.00 0.00 3.01
239 244 0.111253 CTCCAAACCAACCTCTGCCT 59.889 55.000 0.00 0.00 0.00 4.75
259 264 3.387947 CAACCTACGCCCCGTCCT 61.388 66.667 0.00 0.00 41.54 3.85
314 319 1.333619 CTCCAAACAGACACCCAAACG 59.666 52.381 0.00 0.00 0.00 3.60
407 412 0.323629 TCCGTTGGGCTCGATCTTTT 59.676 50.000 0.00 0.00 0.00 2.27
421 426 4.714802 TCGATCTTTTCTGGGTGGATTCTA 59.285 41.667 0.00 0.00 0.00 2.10
503 514 1.293924 GAGCCGTCAATGGATGTCTG 58.706 55.000 0.00 0.00 0.00 3.51
507 518 0.371301 CGTCAATGGATGTCTGTGCG 59.629 55.000 0.00 0.00 0.00 5.34
603 633 5.596361 TCTCGAGGAGAATAAGATGAAAGCT 59.404 40.000 13.56 0.00 35.59 3.74
630 850 3.183775 CGGTGAAAGTGAACGTTAGGAAG 59.816 47.826 0.00 0.00 0.00 3.46
677 900 7.603651 ACTGTAGTAAGAACAGGAACATACTG 58.396 38.462 8.01 0.00 46.97 2.74
678 901 6.395629 TGTAGTAAGAACAGGAACATACTGC 58.604 40.000 0.00 0.00 39.55 4.40
679 902 5.483685 AGTAAGAACAGGAACATACTGCA 57.516 39.130 0.00 0.00 39.55 4.41
695 918 4.485024 ACTGCAGTAGTAATACGATCCG 57.515 45.455 20.16 0.00 38.04 4.18
719 942 2.501610 GCCACGGATCTGGGAGAC 59.498 66.667 4.99 0.00 0.00 3.36
816 1587 0.025001 GTGCGTACGTATGCTTGCTG 59.975 55.000 33.14 4.28 38.96 4.41
833 1604 3.771491 GCGTCGCACACAGCAGAG 61.771 66.667 13.44 0.00 46.13 3.35
834 1605 2.050077 CGTCGCACACAGCAGAGA 60.050 61.111 0.00 0.00 46.13 3.10
835 1606 2.085262 CGTCGCACACAGCAGAGAG 61.085 63.158 0.00 0.00 46.13 3.20
836 1607 2.048784 TCGCACACAGCAGAGAGC 60.049 61.111 0.00 0.00 46.13 4.09
965 1748 0.188834 AATCCCTCCTCCTACCTCCG 59.811 60.000 0.00 0.00 0.00 4.63
969 1752 1.613610 CTCCTCCTACCTCCGTCCA 59.386 63.158 0.00 0.00 0.00 4.02
975 1758 0.969894 CCTACCTCCGTCCATCCATC 59.030 60.000 0.00 0.00 0.00 3.51
976 1759 1.704641 CTACCTCCGTCCATCCATCA 58.295 55.000 0.00 0.00 0.00 3.07
977 1760 1.341531 CTACCTCCGTCCATCCATCAC 59.658 57.143 0.00 0.00 0.00 3.06
978 1761 0.617535 ACCTCCGTCCATCCATCACA 60.618 55.000 0.00 0.00 0.00 3.58
979 1762 0.105593 CCTCCGTCCATCCATCACAG 59.894 60.000 0.00 0.00 0.00 3.66
980 1763 1.114627 CTCCGTCCATCCATCACAGA 58.885 55.000 0.00 0.00 0.00 3.41
981 1764 1.690893 CTCCGTCCATCCATCACAGAT 59.309 52.381 0.00 0.00 0.00 2.90
982 1765 1.688735 TCCGTCCATCCATCACAGATC 59.311 52.381 0.00 0.00 0.00 2.75
983 1766 1.413812 CCGTCCATCCATCACAGATCA 59.586 52.381 0.00 0.00 0.00 2.92
984 1767 2.477825 CGTCCATCCATCACAGATCAC 58.522 52.381 0.00 0.00 0.00 3.06
985 1768 2.159057 CGTCCATCCATCACAGATCACA 60.159 50.000 0.00 0.00 0.00 3.58
986 1769 3.201290 GTCCATCCATCACAGATCACAC 58.799 50.000 0.00 0.00 0.00 3.82
987 1770 2.171237 TCCATCCATCACAGATCACACC 59.829 50.000 0.00 0.00 0.00 4.16
988 1771 2.207590 CATCCATCACAGATCACACCG 58.792 52.381 0.00 0.00 0.00 4.94
989 1772 0.108186 TCCATCACAGATCACACCGC 60.108 55.000 0.00 0.00 0.00 5.68
990 1773 1.091771 CCATCACAGATCACACCGCC 61.092 60.000 0.00 0.00 0.00 6.13
1073 1856 6.270231 CCTTCCTGCCACTATATATATACCCC 59.730 46.154 0.00 0.00 0.00 4.95
1074 1857 5.391256 TCCTGCCACTATATATATACCCCG 58.609 45.833 0.00 0.00 0.00 5.73
1145 1928 0.767998 TATTGCACTGTCCACCACCA 59.232 50.000 0.00 0.00 0.00 4.17
1211 2102 2.607750 AGAGCTTGCCGGGAAGGA 60.608 61.111 33.31 1.13 45.00 3.36
1224 2115 0.105709 GGAAGGAGGAGGAGGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
1225 2116 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1226 2117 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
1227 2118 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1228 2119 1.152546 GAGGAGGAGGAGGAGGAGC 60.153 68.421 0.00 0.00 0.00 4.70
1229 2120 2.520741 GGAGGAGGAGGAGGAGCG 60.521 72.222 0.00 0.00 0.00 5.03
1541 2466 3.640407 GGTGGACTGGAGCCTGCA 61.640 66.667 0.00 0.00 0.00 4.41
1580 2505 5.182001 AGTTTTGTTTGCTCGATCTGCTTAT 59.818 36.000 8.62 0.00 0.00 1.73
1581 2506 5.627499 TTTGTTTGCTCGATCTGCTTATT 57.373 34.783 8.62 0.00 0.00 1.40
1582 2507 6.735678 TTTGTTTGCTCGATCTGCTTATTA 57.264 33.333 8.62 0.00 0.00 0.98
1663 2596 6.335471 TGTGGTCTTATGTACATATACGGG 57.665 41.667 16.16 5.48 33.60 5.28
1684 2617 2.355716 GGTAGTATTCTGCAAGGTGGCA 60.356 50.000 0.00 0.00 42.53 4.92
1739 2676 1.881973 TGCATTGCCTTGTCTTCTCAC 59.118 47.619 6.12 0.00 0.00 3.51
1752 2689 1.395608 CTTCTCACTCTCCGTCGAGAC 59.604 57.143 5.35 0.00 40.34 3.36
1781 2718 2.175715 ACTGAGAAAGGGTTTTGCTCCT 59.824 45.455 0.00 0.00 34.29 3.69
1782 2719 3.394606 ACTGAGAAAGGGTTTTGCTCCTA 59.605 43.478 0.00 0.00 32.21 2.94
1783 2720 4.043435 ACTGAGAAAGGGTTTTGCTCCTAT 59.957 41.667 0.00 0.00 32.21 2.57
1818 2755 3.006537 GTGCCGGCTCCTCTGTTTATATA 59.993 47.826 29.70 0.00 0.00 0.86
1819 2756 3.838317 TGCCGGCTCCTCTGTTTATATAT 59.162 43.478 29.70 0.00 0.00 0.86
1820 2757 4.184629 GCCGGCTCCTCTGTTTATATATG 58.815 47.826 22.15 0.00 0.00 1.78
1821 2758 4.184629 CCGGCTCCTCTGTTTATATATGC 58.815 47.826 0.00 0.00 0.00 3.14
1822 2759 4.322725 CCGGCTCCTCTGTTTATATATGCA 60.323 45.833 0.00 0.00 0.00 3.96
1863 2800 2.353704 CGTCCACAATCAGGAGCTAACA 60.354 50.000 0.00 0.00 35.42 2.41
1864 2801 3.674997 GTCCACAATCAGGAGCTAACAA 58.325 45.455 0.00 0.00 35.42 2.83
1865 2802 3.437049 GTCCACAATCAGGAGCTAACAAC 59.563 47.826 0.00 0.00 35.42 3.32
1866 2803 2.749621 CCACAATCAGGAGCTAACAACC 59.250 50.000 0.00 0.00 0.00 3.77
1867 2804 3.411446 CACAATCAGGAGCTAACAACCA 58.589 45.455 0.00 0.00 0.00 3.67
1868 2805 3.438087 CACAATCAGGAGCTAACAACCAG 59.562 47.826 0.00 0.00 0.00 4.00
1869 2806 3.327757 ACAATCAGGAGCTAACAACCAGA 59.672 43.478 0.00 0.00 0.00 3.86
1870 2807 4.018960 ACAATCAGGAGCTAACAACCAGAT 60.019 41.667 0.00 0.00 32.72 2.90
1871 2808 4.851639 ATCAGGAGCTAACAACCAGATT 57.148 40.909 0.00 0.00 28.15 2.40
1872 2809 5.957771 ATCAGGAGCTAACAACCAGATTA 57.042 39.130 0.00 0.00 28.15 1.75
1873 2810 5.086104 TCAGGAGCTAACAACCAGATTAC 57.914 43.478 0.00 0.00 0.00 1.89
1874 2811 4.530553 TCAGGAGCTAACAACCAGATTACA 59.469 41.667 0.00 0.00 0.00 2.41
1875 2812 5.012664 TCAGGAGCTAACAACCAGATTACAA 59.987 40.000 0.00 0.00 0.00 2.41
1876 2813 5.122396 CAGGAGCTAACAACCAGATTACAAC 59.878 44.000 0.00 0.00 0.00 3.32
1881 2818 6.320164 AGCTAACAACCAGATTACAACAAACA 59.680 34.615 0.00 0.00 0.00 2.83
1913 2850 4.156182 GGCTTTACAACTTGATACGCAAC 58.844 43.478 0.00 0.00 31.96 4.17
1915 2852 4.846137 GCTTTACAACTTGATACGCAACTG 59.154 41.667 0.00 0.00 31.96 3.16
1916 2853 5.333798 GCTTTACAACTTGATACGCAACTGA 60.334 40.000 0.00 0.00 31.96 3.41
1918 2855 6.795098 TTACAACTTGATACGCAACTGAAT 57.205 33.333 0.00 0.00 31.96 2.57
1920 2857 4.754618 ACAACTTGATACGCAACTGAATCA 59.245 37.500 0.00 0.00 31.96 2.57
1921 2858 5.412594 ACAACTTGATACGCAACTGAATCAT 59.587 36.000 0.00 0.00 31.96 2.45
1923 2860 7.280876 ACAACTTGATACGCAACTGAATCATAT 59.719 33.333 0.00 0.00 31.96 1.78
1924 2861 7.182361 ACTTGATACGCAACTGAATCATATG 57.818 36.000 0.00 0.00 31.96 1.78
1925 2862 5.596268 TGATACGCAACTGAATCATATGC 57.404 39.130 9.49 9.49 0.00 3.14
1928 2865 2.761392 GCAACTGAATCATATGCGCA 57.239 45.000 14.96 14.96 0.00 6.09
1929 2866 3.069074 GCAACTGAATCATATGCGCAA 57.931 42.857 17.11 4.13 0.00 4.85
1942 2883 6.454795 TCATATGCGCAAGTCTACATCATTA 58.545 36.000 17.11 0.00 41.68 1.90
1943 2884 6.587608 TCATATGCGCAAGTCTACATCATTAG 59.412 38.462 17.11 0.00 41.68 1.73
1944 2885 4.123497 TGCGCAAGTCTACATCATTAGT 57.877 40.909 8.16 0.00 41.68 2.24
1945 2886 5.257082 TGCGCAAGTCTACATCATTAGTA 57.743 39.130 8.16 0.00 41.68 1.82
1958 2899 9.696917 CTACATCATTAGTATCTGCACAACATA 57.303 33.333 0.00 0.00 0.00 2.29
1960 2901 8.996271 ACATCATTAGTATCTGCACAACATATG 58.004 33.333 0.00 0.00 0.00 1.78
1988 2929 7.070821 ACGTATCTTAACAGACCCATAGGATTT 59.929 37.037 0.00 0.00 36.73 2.17
2064 3016 5.663106 TCCATCACTAATTAGCTCCTCTTGT 59.337 40.000 12.54 0.00 0.00 3.16
2065 3017 6.839134 TCCATCACTAATTAGCTCCTCTTGTA 59.161 38.462 12.54 0.00 0.00 2.41
2066 3018 7.344612 TCCATCACTAATTAGCTCCTCTTGTAA 59.655 37.037 12.54 0.00 0.00 2.41
2067 3019 8.153550 CCATCACTAATTAGCTCCTCTTGTAAT 58.846 37.037 12.54 0.00 0.00 1.89
2068 3020 9.553064 CATCACTAATTAGCTCCTCTTGTAATT 57.447 33.333 12.54 0.00 0.00 1.40
2069 3021 8.948631 TCACTAATTAGCTCCTCTTGTAATTG 57.051 34.615 12.54 0.00 0.00 2.32
2070 3022 8.540388 TCACTAATTAGCTCCTCTTGTAATTGT 58.460 33.333 12.54 0.00 0.00 2.71
2071 3023 9.817809 CACTAATTAGCTCCTCTTGTAATTGTA 57.182 33.333 12.54 0.00 0.00 2.41
2113 3065 4.635473 TCATACATTTCCCCTCTCCTCTT 58.365 43.478 0.00 0.00 0.00 2.85
2158 3115 7.707104 TCCTCACACTTTTCATCTTTCTTTTC 58.293 34.615 0.00 0.00 0.00 2.29
2161 3118 7.483307 TCACACTTTTCATCTTTCTTTTCTGG 58.517 34.615 0.00 0.00 0.00 3.86
2163 3120 7.221452 CACACTTTTCATCTTTCTTTTCTGGTG 59.779 37.037 0.00 0.00 0.00 4.17
2164 3121 7.122650 ACACTTTTCATCTTTCTTTTCTGGTGA 59.877 33.333 0.00 0.00 0.00 4.02
2212 3175 6.541907 AGGCCCTATTGTCTACTACTACTAC 58.458 44.000 0.00 0.00 0.00 2.73
2213 3176 6.332369 AGGCCCTATTGTCTACTACTACTACT 59.668 42.308 0.00 0.00 0.00 2.57
2215 3178 7.606073 GGCCCTATTGTCTACTACTACTACTAC 59.394 44.444 0.00 0.00 0.00 2.73
2216 3179 7.330700 GCCCTATTGTCTACTACTACTACTACG 59.669 44.444 0.00 0.00 0.00 3.51
2217 3180 7.816995 CCCTATTGTCTACTACTACTACTACGG 59.183 44.444 0.00 0.00 0.00 4.02
2218 3181 7.816995 CCTATTGTCTACTACTACTACTACGGG 59.183 44.444 0.00 0.00 0.00 5.28
2219 3182 6.791867 TTGTCTACTACTACTACTACGGGA 57.208 41.667 0.00 0.00 0.00 5.14
2220 3183 6.985653 TGTCTACTACTACTACTACGGGAT 57.014 41.667 0.00 0.00 0.00 3.85
2221 3184 8.478775 TTGTCTACTACTACTACTACGGGATA 57.521 38.462 0.00 0.00 0.00 2.59
2222 3185 8.657387 TGTCTACTACTACTACTACGGGATAT 57.343 38.462 0.00 0.00 0.00 1.63
2271 3235 1.983972 TTTGTGTGGCGTTGTTGTTC 58.016 45.000 0.00 0.00 0.00 3.18
2465 3434 1.072266 TGGACAGCCCATACCAAACT 58.928 50.000 0.00 0.00 40.82 2.66
2466 3435 2.270858 TGGACAGCCCATACCAAACTA 58.729 47.619 0.00 0.00 40.82 2.24
2506 3475 3.315140 TCGTTGGCCCACGATGGA 61.315 61.111 26.71 6.17 44.18 3.41
2507 3476 2.819595 CGTTGGCCCACGATGGAG 60.820 66.667 24.22 0.00 43.15 3.86
2516 3485 2.939640 GCCCACGATGGAGTACAATGTT 60.940 50.000 5.71 0.00 40.96 2.71
2520 3489 3.436704 CACGATGGAGTACAATGTTTGCT 59.563 43.478 0.00 0.00 0.00 3.91
2535 3508 2.745492 GCTCCAGCTGGTGTCTGC 60.745 66.667 31.58 22.57 38.21 4.26
2536 3509 2.433838 CTCCAGCTGGTGTCTGCG 60.434 66.667 31.58 4.22 41.81 5.18
2580 3556 1.226686 CCATAGCGCAGATGCTGTCC 61.227 60.000 11.47 0.00 46.70 4.02
2668 3644 6.707290 TGTACAACTATTGTCCAGCAACTAT 58.293 36.000 0.00 0.00 44.12 2.12
2669 3645 7.165485 TGTACAACTATTGTCCAGCAACTATT 58.835 34.615 0.00 0.00 44.12 1.73
2673 3649 4.878397 ACTATTGTCCAGCAACTATTCAGC 59.122 41.667 0.00 0.00 40.28 4.26
2674 3650 2.857186 TGTCCAGCAACTATTCAGCA 57.143 45.000 0.00 0.00 0.00 4.41
2680 3656 4.020218 TCCAGCAACTATTCAGCAAGTACT 60.020 41.667 0.00 0.00 0.00 2.73
2687 3663 7.148340 GCAACTATTCAGCAAGTACTTCTTCAT 60.148 37.037 4.77 3.82 33.63 2.57
2688 3664 9.371136 CAACTATTCAGCAAGTACTTCTTCATA 57.629 33.333 4.77 4.63 33.63 2.15
2694 3670 5.123979 CAGCAAGTACTTCTTCATAAACCCC 59.876 44.000 4.77 0.00 33.63 4.95
2713 3690 2.791383 CGCAAGGTCATTTTTGGTGA 57.209 45.000 0.00 0.00 0.00 4.02
2714 3691 2.664916 CGCAAGGTCATTTTTGGTGAG 58.335 47.619 0.00 0.00 0.00 3.51
2721 3698 3.569701 GGTCATTTTTGGTGAGCTGAGAA 59.430 43.478 0.00 0.00 40.10 2.87
2726 3703 2.049063 GGTGAGCTGAGAACGCGT 60.049 61.111 5.58 5.58 0.00 6.01
2730 3707 2.049063 AGCTGAGAACGCGTCACC 60.049 61.111 14.44 5.03 0.00 4.02
2731 3708 3.112709 GCTGAGAACGCGTCACCC 61.113 66.667 14.44 1.00 0.00 4.61
2733 3710 3.553437 CTGAGAACGCGTCACCCGT 62.553 63.158 14.44 0.00 41.24 5.28
2736 3713 3.400590 GAACGCGTCACCCGTCAC 61.401 66.667 14.44 0.00 38.06 3.67
2740 3717 4.634133 GCGTCACCCGTCACGTGA 62.634 66.667 15.76 15.76 38.32 4.35
2755 3732 3.973516 TGACGCGCTCCGACACTT 61.974 61.111 5.73 0.00 41.02 3.16
2757 3734 2.717809 GACGCGCTCCGACACTTTC 61.718 63.158 5.73 0.00 41.02 2.62
2760 3737 1.782181 GCGCTCCGACACTTTCTTC 59.218 57.895 0.00 0.00 0.00 2.87
2761 3738 1.945776 GCGCTCCGACACTTTCTTCG 61.946 60.000 0.00 0.00 34.93 3.79
2762 3739 0.386858 CGCTCCGACACTTTCTTCGA 60.387 55.000 0.00 0.00 37.43 3.71
2763 3740 1.779569 GCTCCGACACTTTCTTCGAA 58.220 50.000 0.00 0.00 37.43 3.71
2767 3744 4.319549 GCTCCGACACTTTCTTCGAATTTT 60.320 41.667 0.00 0.00 37.43 1.82
2769 3746 6.402226 GCTCCGACACTTTCTTCGAATTTTAT 60.402 38.462 0.00 0.00 37.43 1.40
2770 3747 7.429636 TCCGACACTTTCTTCGAATTTTATT 57.570 32.000 0.00 0.00 37.43 1.40
2800 3788 6.459923 TGTTTTTCTGTACTTGTTTTTGGCT 58.540 32.000 0.00 0.00 0.00 4.75
2807 3834 3.878160 ACTTGTTTTTGGCTTTTCGGA 57.122 38.095 0.00 0.00 0.00 4.55
2852 3879 8.601243 AAATTCGTGTATATTTTTCTTCTGCG 57.399 30.769 0.00 0.00 0.00 5.18
2853 3880 5.712217 TCGTGTATATTTTTCTTCTGCGG 57.288 39.130 0.00 0.00 0.00 5.69
2854 3881 4.569162 TCGTGTATATTTTTCTTCTGCGGG 59.431 41.667 0.00 0.00 0.00 6.13
2855 3882 4.569162 CGTGTATATTTTTCTTCTGCGGGA 59.431 41.667 0.00 0.00 0.00 5.14
2856 3883 5.064198 CGTGTATATTTTTCTTCTGCGGGAA 59.936 40.000 0.00 0.00 0.00 3.97
2873 3900 4.723248 CGGGAAGCACAGATTTACTTTTC 58.277 43.478 0.00 0.00 0.00 2.29
2874 3901 4.669197 CGGGAAGCACAGATTTACTTTTCG 60.669 45.833 0.00 0.00 0.00 3.46
2875 3902 4.215613 GGGAAGCACAGATTTACTTTTCGT 59.784 41.667 0.00 0.00 0.00 3.85
2894 3921 1.886542 GTGGAGGCACGGATTTTCTTT 59.113 47.619 0.00 0.00 0.00 2.52
2895 3922 2.095212 GTGGAGGCACGGATTTTCTTTC 60.095 50.000 0.00 0.00 0.00 2.62
2896 3923 2.159382 GGAGGCACGGATTTTCTTTCA 58.841 47.619 0.00 0.00 0.00 2.69
2897 3924 2.755103 GGAGGCACGGATTTTCTTTCAT 59.245 45.455 0.00 0.00 0.00 2.57
2899 3926 2.493278 AGGCACGGATTTTCTTTCATGG 59.507 45.455 0.00 0.00 0.00 3.66
2901 3928 3.501950 GCACGGATTTTCTTTCATGGTC 58.498 45.455 0.00 0.00 0.00 4.02
2902 3929 3.747193 CACGGATTTTCTTTCATGGTCG 58.253 45.455 0.00 0.00 0.00 4.79
2908 3935 6.088085 CGGATTTTCTTTCATGGTCGAAAAAG 59.912 38.462 15.60 7.98 38.41 2.27
2909 3936 6.366061 GGATTTTCTTTCATGGTCGAAAAAGG 59.634 38.462 15.60 0.00 38.41 3.11
2910 3937 6.458232 TTTTCTTTCATGGTCGAAAAAGGA 57.542 33.333 11.72 0.00 34.59 3.36
2912 3939 6.458232 TTCTTTCATGGTCGAAAAAGGAAA 57.542 33.333 0.00 0.00 34.59 3.13
2913 3940 6.458232 TCTTTCATGGTCGAAAAAGGAAAA 57.542 33.333 0.00 0.00 34.59 2.29
2914 3941 6.868622 TCTTTCATGGTCGAAAAAGGAAAAA 58.131 32.000 0.00 0.00 34.59 1.94
2942 3969 7.461182 TGTTTTCTTTTTCTTCCACAAGAGA 57.539 32.000 0.00 0.00 39.90 3.10
2947 3974 5.586243 TCTTTTTCTTCCACAAGAGACACAG 59.414 40.000 0.00 0.00 39.90 3.66
2956 3983 6.223852 TCCACAAGAGACACAGATTTACTTC 58.776 40.000 0.00 0.00 0.00 3.01
2962 3989 5.473846 AGAGACACAGATTTACTTCTCGTGA 59.526 40.000 0.00 0.00 36.01 4.35
2979 4006 2.093783 CGTGAAGGTACGGATTTGCTTC 59.906 50.000 0.00 0.00 40.22 3.86
2981 4008 2.039216 TGAAGGTACGGATTTGCTTCCA 59.961 45.455 0.00 0.00 35.34 3.53
2987 4014 2.154462 ACGGATTTGCTTCCACAAGAG 58.846 47.619 0.00 0.00 35.34 2.85
2989 4016 2.519013 GGATTTGCTTCCACAAGAGGT 58.481 47.619 0.00 0.00 35.72 3.85
2994 4021 2.047061 TGCTTCCACAAGAGGTGTAGT 58.953 47.619 0.00 0.00 46.44 2.73
3001 4028 0.317160 CAAGAGGTGTAGTCGTGCCA 59.683 55.000 0.00 0.00 0.00 4.92
3006 4033 1.577922 GTGTAGTCGTGCCACTCGA 59.422 57.895 0.00 0.00 34.91 4.04
3011 4038 0.935196 AGTCGTGCCACTCGAAAAAC 59.065 50.000 0.00 0.00 39.01 2.43
3012 4039 0.653636 GTCGTGCCACTCGAAAAACA 59.346 50.000 0.00 0.00 39.01 2.83
3014 4041 1.738350 TCGTGCCACTCGAAAAACAAA 59.262 42.857 0.00 0.00 34.36 2.83
3058 4097 4.826556 GTGAGAGGCACAGATTTACTTCT 58.173 43.478 0.00 0.00 46.91 2.85
3059 4098 4.867608 GTGAGAGGCACAGATTTACTTCTC 59.132 45.833 0.00 0.00 46.91 2.87
3065 4115 5.098211 GGCACAGATTTACTTCTCATTTGC 58.902 41.667 0.00 0.00 0.00 3.68
3070 4120 6.716628 ACAGATTTACTTCTCATTTGCTTCCA 59.283 34.615 0.00 0.00 0.00 3.53
3072 4122 6.716628 AGATTTACTTCTCATTTGCTTCCACA 59.283 34.615 0.00 0.00 0.00 4.17
3073 4123 5.947228 TTACTTCTCATTTGCTTCCACAG 57.053 39.130 0.00 0.00 0.00 3.66
3076 4126 3.063510 TCTCATTTGCTTCCACAGGAG 57.936 47.619 0.00 0.00 31.21 3.69
3078 4128 1.704628 TCATTTGCTTCCACAGGAGGA 59.295 47.619 0.00 0.00 29.67 3.71
3099 4149 1.332375 CAGTCGTGCCTTTCGGAAAAA 59.668 47.619 4.53 0.00 0.00 1.94
3100 4150 1.602377 AGTCGTGCCTTTCGGAAAAAG 59.398 47.619 4.53 0.66 0.00 2.27
3113 4163 8.593492 CTTTCGGAAAAAGGAAAAATCAGATT 57.407 30.769 4.53 0.00 32.27 2.40
3136 4186 4.853924 TTTTTCCTTTCATGAGAGGCAC 57.146 40.909 24.34 0.00 32.93 5.01
3138 4188 3.726557 TTCCTTTCATGAGAGGCACAT 57.273 42.857 24.34 0.00 32.93 3.21
3150 4200 6.018589 TGAGAGGCACATATCTATTTCTCG 57.981 41.667 0.00 0.00 34.13 4.04
3151 4201 5.536538 TGAGAGGCACATATCTATTTCTCGT 59.463 40.000 0.00 0.00 34.13 4.18
3155 4205 5.070446 AGGCACATATCTATTTCTCGTGGAA 59.930 40.000 0.00 0.00 0.00 3.53
3158 4208 5.117745 CACATATCTATTTCTCGTGGAAGCG 59.882 44.000 0.00 0.00 35.16 4.68
3166 4216 1.546923 TCTCGTGGAAGCGTGGATTTA 59.453 47.619 0.00 0.00 0.00 1.40
3167 4217 1.659098 CTCGTGGAAGCGTGGATTTAC 59.341 52.381 0.00 0.00 0.00 2.01
3188 4238 1.340248 AGTCGTGCCTCTCGAAAAAGA 59.660 47.619 0.00 0.00 39.01 2.52
3229 4288 2.262915 GAGTGGTGTGCCTCTCGG 59.737 66.667 0.80 0.00 43.02 4.63
3230 4289 2.203640 AGTGGTGTGCCTCTCGGA 60.204 61.111 0.00 0.00 33.69 4.55
3231 4290 1.816863 GAGTGGTGTGCCTCTCGGAA 61.817 60.000 0.80 0.00 43.02 4.30
3232 4291 1.070786 GTGGTGTGCCTCTCGGAAA 59.929 57.895 0.00 0.00 35.27 3.13
3233 4292 0.534203 GTGGTGTGCCTCTCGGAAAA 60.534 55.000 0.00 0.00 35.27 2.29
3234 4293 0.181587 TGGTGTGCCTCTCGGAAAAA 59.818 50.000 0.00 0.00 35.27 1.94
3235 4294 0.875059 GGTGTGCCTCTCGGAAAAAG 59.125 55.000 0.00 0.00 0.00 2.27
3236 4295 1.542547 GGTGTGCCTCTCGGAAAAAGA 60.543 52.381 0.00 0.00 0.00 2.52
3237 4296 2.218603 GTGTGCCTCTCGGAAAAAGAA 58.781 47.619 0.00 0.00 0.00 2.52
3238 4297 2.616842 GTGTGCCTCTCGGAAAAAGAAA 59.383 45.455 0.00 0.00 0.00 2.52
3239 4298 3.066203 GTGTGCCTCTCGGAAAAAGAAAA 59.934 43.478 0.00 0.00 0.00 2.29
3240 4299 3.697045 TGTGCCTCTCGGAAAAAGAAAAA 59.303 39.130 0.00 0.00 0.00 1.94
3278 4580 2.674796 GTGAGAGGCACCGATTTACT 57.325 50.000 0.00 0.00 41.78 2.24
3292 4594 3.806521 CGATTTACTTCTCATGGAGGCAG 59.193 47.826 0.00 0.00 0.00 4.85
3293 4595 4.442052 CGATTTACTTCTCATGGAGGCAGA 60.442 45.833 0.00 0.00 0.00 4.26
3294 4596 5.619220 GATTTACTTCTCATGGAGGCAGAT 58.381 41.667 0.00 0.00 0.00 2.90
3299 4601 6.753913 ACTTCTCATGGAGGCAGATATTTA 57.246 37.500 0.00 0.00 0.00 1.40
3300 4602 7.327064 ACTTCTCATGGAGGCAGATATTTAT 57.673 36.000 0.00 0.00 0.00 1.40
3302 4604 7.882271 ACTTCTCATGGAGGCAGATATTTATTC 59.118 37.037 0.00 0.00 0.00 1.75
3304 4606 6.273026 TCTCATGGAGGCAGATATTTATTCCA 59.727 38.462 0.00 0.00 37.61 3.53
3305 4607 7.036154 TCATGGAGGCAGATATTTATTCCAT 57.964 36.000 0.00 0.00 42.91 3.41
3307 4609 5.012239 TGGAGGCAGATATTTATTCCATGC 58.988 41.667 0.00 0.00 0.00 4.06
3310 4612 5.990120 GGCAGATATTTATTCCATGCCTT 57.010 39.130 6.07 0.00 46.41 4.35
3311 4613 6.350629 GGCAGATATTTATTCCATGCCTTT 57.649 37.500 6.07 0.00 46.41 3.11
3312 4614 6.762333 GGCAGATATTTATTCCATGCCTTTT 58.238 36.000 6.07 0.00 46.41 2.27
3313 4615 6.647895 GGCAGATATTTATTCCATGCCTTTTG 59.352 38.462 6.07 0.00 46.41 2.44
3365 4687 4.025313 GCGAGAGGCACAAATCTATTTCTC 60.025 45.833 0.00 0.00 42.87 2.87
3366 4688 5.111989 CGAGAGGCACAAATCTATTTCTCA 58.888 41.667 0.00 0.00 0.00 3.27
3377 4699 5.579753 ATCTATTTCTCATGGAGGCATGT 57.420 39.130 0.00 0.00 34.39 3.21
3388 4710 1.678101 GGAGGCATGTATTTGCAGTCC 59.322 52.381 0.00 0.72 44.59 3.85
3443 4765 3.266964 GCAAAGGCGTGCATCTCA 58.733 55.556 10.78 0.00 44.29 3.27
3444 4766 1.136147 GCAAAGGCGTGCATCTCAG 59.864 57.895 10.78 0.00 44.29 3.35
3515 4837 0.394216 TCATGGAGGCACGGATTTGG 60.394 55.000 0.00 0.00 0.00 3.28
3519 4841 1.313091 GGAGGCACGGATTTGGTTCC 61.313 60.000 0.00 0.00 0.00 3.62
3532 4854 2.811317 GTTCCGCGAGAGGCACAG 60.811 66.667 8.23 0.00 43.84 3.66
3538 4860 2.459442 GCGAGAGGCACAGTCATGC 61.459 63.158 0.00 0.00 45.34 4.06
3596 4918 1.533625 TTTTTCCCATGAGAGGCACG 58.466 50.000 0.00 0.00 0.00 5.34
3597 4919 0.322456 TTTTCCCATGAGAGGCACGG 60.322 55.000 0.00 0.00 0.00 4.94
3598 4920 1.198094 TTTCCCATGAGAGGCACGGA 61.198 55.000 0.00 0.00 29.14 4.69
3599 4921 0.982852 TTCCCATGAGAGGCACGGAT 60.983 55.000 0.00 0.00 29.14 4.18
3600 4922 0.982852 TCCCATGAGAGGCACGGATT 60.983 55.000 0.00 0.00 29.14 3.01
3601 4923 0.107017 CCCATGAGAGGCACGGATTT 60.107 55.000 0.00 0.00 29.14 2.17
3602 4924 1.019673 CCATGAGAGGCACGGATTTG 58.980 55.000 0.00 0.00 29.14 2.32
3603 4925 0.379669 CATGAGAGGCACGGATTTGC 59.620 55.000 0.00 0.00 42.18 3.68
3604 4926 0.254178 ATGAGAGGCACGGATTTGCT 59.746 50.000 0.00 0.00 42.56 3.91
3605 4927 0.036732 TGAGAGGCACGGATTTGCTT 59.963 50.000 0.00 0.00 42.56 3.91
3606 4928 0.729690 GAGAGGCACGGATTTGCTTC 59.270 55.000 0.28 0.28 46.31 3.86
3607 4929 2.859992 GAGGCACGGATTTGCTTCT 58.140 52.632 1.28 0.00 43.46 2.85
3608 4930 0.729690 GAGGCACGGATTTGCTTCTC 59.270 55.000 1.28 0.00 43.46 2.87
3609 4931 0.036732 AGGCACGGATTTGCTTCTCA 59.963 50.000 0.00 0.00 42.56 3.27
3610 4932 1.098050 GGCACGGATTTGCTTCTCAT 58.902 50.000 0.00 0.00 42.56 2.90
3611 4933 1.064654 GGCACGGATTTGCTTCTCATC 59.935 52.381 0.00 0.00 42.56 2.92
3612 4934 1.064654 GCACGGATTTGCTTCTCATCC 59.935 52.381 0.00 0.00 39.59 3.51
3613 4935 2.358957 CACGGATTTGCTTCTCATCCA 58.641 47.619 0.00 0.00 36.97 3.41
3614 4936 2.353889 CACGGATTTGCTTCTCATCCAG 59.646 50.000 0.00 0.00 36.97 3.86
3615 4937 1.945394 CGGATTTGCTTCTCATCCAGG 59.055 52.381 0.00 0.00 36.97 4.45
3616 4938 1.680207 GGATTTGCTTCTCATCCAGGC 59.320 52.381 0.00 0.00 37.10 4.85
3617 4939 2.372264 GATTTGCTTCTCATCCAGGCA 58.628 47.619 0.00 0.00 0.00 4.75
3618 4940 2.519771 TTTGCTTCTCATCCAGGCAT 57.480 45.000 0.00 0.00 32.87 4.40
3619 4941 3.650281 TTTGCTTCTCATCCAGGCATA 57.350 42.857 0.00 0.00 32.87 3.14
3620 4942 2.924757 TGCTTCTCATCCAGGCATAG 57.075 50.000 0.00 0.00 0.00 2.23
3621 4943 2.401568 TGCTTCTCATCCAGGCATAGA 58.598 47.619 0.00 0.00 0.00 1.98
3622 4944 2.977580 TGCTTCTCATCCAGGCATAGAT 59.022 45.455 0.00 0.00 0.00 1.98
3623 4945 3.393609 TGCTTCTCATCCAGGCATAGATT 59.606 43.478 0.00 0.00 0.00 2.40
3624 4946 4.141321 TGCTTCTCATCCAGGCATAGATTT 60.141 41.667 0.00 0.00 0.00 2.17
3625 4947 4.215827 GCTTCTCATCCAGGCATAGATTTG 59.784 45.833 0.00 0.00 0.00 2.32
3626 4948 3.748083 TCTCATCCAGGCATAGATTTGC 58.252 45.455 0.00 0.00 42.01 3.68
3627 4949 3.393609 TCTCATCCAGGCATAGATTTGCT 59.606 43.478 0.00 0.00 42.38 3.91
3628 4950 4.141321 TCTCATCCAGGCATAGATTTGCTT 60.141 41.667 0.00 0.00 42.38 3.91
3629 4951 4.139786 TCATCCAGGCATAGATTTGCTTC 58.860 43.478 0.00 0.00 42.38 3.86
3630 4952 2.936202 TCCAGGCATAGATTTGCTTCC 58.064 47.619 0.00 0.00 42.38 3.46
3631 4953 1.605710 CCAGGCATAGATTTGCTTCCG 59.394 52.381 0.00 0.00 42.38 4.30
3632 4954 1.002033 CAGGCATAGATTTGCTTCCGC 60.002 52.381 0.00 0.00 42.38 5.54
3633 4955 0.040958 GGCATAGATTTGCTTCCGCG 60.041 55.000 0.00 0.00 42.38 6.46
3634 4956 0.937304 GCATAGATTTGCTTCCGCGA 59.063 50.000 8.23 0.00 39.57 5.87
3635 4957 1.070309 GCATAGATTTGCTTCCGCGAG 60.070 52.381 8.23 0.00 39.57 5.03
3636 4958 2.473816 CATAGATTTGCTTCCGCGAGA 58.526 47.619 8.23 0.00 39.65 4.04
3637 4959 2.209838 TAGATTTGCTTCCGCGAGAG 57.790 50.000 8.23 5.93 39.65 3.20
3638 4960 0.532573 AGATTTGCTTCCGCGAGAGA 59.467 50.000 8.23 0.00 39.65 3.10
3639 4961 0.647925 GATTTGCTTCCGCGAGAGAC 59.352 55.000 8.23 2.16 39.65 3.36
3640 4962 0.037326 ATTTGCTTCCGCGAGAGACA 60.037 50.000 8.23 4.81 39.65 3.41
3641 4963 0.944311 TTTGCTTCCGCGAGAGACAC 60.944 55.000 8.23 0.00 39.65 3.67
3642 4964 2.082629 TTGCTTCCGCGAGAGACACA 62.083 55.000 8.23 0.00 39.65 3.72
3643 4965 1.803519 GCTTCCGCGAGAGACACAG 60.804 63.158 8.23 0.00 0.00 3.66
3644 4966 1.581954 CTTCCGCGAGAGACACAGT 59.418 57.895 8.23 0.00 0.00 3.55
3645 4967 0.039074 CTTCCGCGAGAGACACAGTT 60.039 55.000 8.23 0.00 0.00 3.16
3646 4968 0.318699 TTCCGCGAGAGACACAGTTG 60.319 55.000 8.23 0.00 0.00 3.16
3647 4969 1.007271 CCGCGAGAGACACAGTTGT 60.007 57.895 8.23 0.00 39.32 3.32
3659 4981 3.996150 CACAGTTGTGGCTTTTCAGAT 57.004 42.857 4.34 0.00 42.10 2.90
3661 4983 5.039480 CACAGTTGTGGCTTTTCAGATAG 57.961 43.478 4.34 0.00 42.10 2.08
3662 4984 4.074970 ACAGTTGTGGCTTTTCAGATAGG 58.925 43.478 0.00 0.00 0.00 2.57
3663 4985 3.441572 CAGTTGTGGCTTTTCAGATAGGG 59.558 47.826 0.00 0.00 0.00 3.53
3664 4986 2.755103 GTTGTGGCTTTTCAGATAGGGG 59.245 50.000 0.00 0.00 0.00 4.79
3665 4987 1.284785 TGTGGCTTTTCAGATAGGGGG 59.715 52.381 0.00 0.00 0.00 5.40
3666 4988 1.564348 GTGGCTTTTCAGATAGGGGGA 59.436 52.381 0.00 0.00 0.00 4.81
3667 4989 2.025321 GTGGCTTTTCAGATAGGGGGAA 60.025 50.000 0.00 0.00 0.00 3.97
3668 4990 2.652348 TGGCTTTTCAGATAGGGGGAAA 59.348 45.455 0.00 0.00 0.00 3.13
3669 4991 3.076785 TGGCTTTTCAGATAGGGGGAAAA 59.923 43.478 0.00 0.00 37.97 2.29
3670 4992 4.264804 TGGCTTTTCAGATAGGGGGAAAAT 60.265 41.667 0.00 0.00 39.13 1.82
3671 4993 4.100035 GGCTTTTCAGATAGGGGGAAAATG 59.900 45.833 0.00 0.00 39.13 2.32
3672 4994 4.711846 GCTTTTCAGATAGGGGGAAAATGT 59.288 41.667 0.00 0.00 39.13 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.151070 CGTTGACAAATCTGTTGATTCCG 58.849 43.478 0.00 0.00 41.62 4.30
1 2 4.215399 TCCGTTGACAAATCTGTTGATTCC 59.785 41.667 0.00 0.00 41.62 3.01
2 3 5.356882 TCCGTTGACAAATCTGTTGATTC 57.643 39.130 0.00 0.00 41.62 2.52
5 6 4.819088 TGATTCCGTTGACAAATCTGTTGA 59.181 37.500 0.00 0.00 35.30 3.18
6 7 5.107109 TGATTCCGTTGACAAATCTGTTG 57.893 39.130 0.00 0.00 35.30 3.33
7 8 5.766150 TTGATTCCGTTGACAAATCTGTT 57.234 34.783 0.00 0.00 35.30 3.16
8 9 5.766150 TTTGATTCCGTTGACAAATCTGT 57.234 34.783 0.00 0.00 38.98 3.41
9 10 6.074356 GGTTTTTGATTCCGTTGACAAATCTG 60.074 38.462 0.00 0.00 33.38 2.90
10 11 5.983118 GGTTTTTGATTCCGTTGACAAATCT 59.017 36.000 0.00 0.00 33.38 2.40
11 12 5.108027 CGGTTTTTGATTCCGTTGACAAATC 60.108 40.000 0.00 0.00 39.51 2.17
12 13 4.742659 CGGTTTTTGATTCCGTTGACAAAT 59.257 37.500 0.00 0.00 39.51 2.32
13 14 4.106197 CGGTTTTTGATTCCGTTGACAAA 58.894 39.130 0.00 0.00 39.51 2.83
14 15 3.696898 CGGTTTTTGATTCCGTTGACAA 58.303 40.909 0.00 0.00 39.51 3.18
15 16 3.341857 CGGTTTTTGATTCCGTTGACA 57.658 42.857 0.00 0.00 39.51 3.58
22 23 2.517650 TGGCAACGGTTTTTGATTCC 57.482 45.000 0.00 0.00 42.51 3.01
23 24 3.453424 AGTTGGCAACGGTTTTTGATTC 58.547 40.909 23.47 0.00 42.51 2.52
24 25 3.453424 GAGTTGGCAACGGTTTTTGATT 58.547 40.909 23.47 2.92 42.51 2.57
25 26 2.542824 CGAGTTGGCAACGGTTTTTGAT 60.543 45.455 23.47 3.68 42.51 2.57
26 27 1.202200 CGAGTTGGCAACGGTTTTTGA 60.202 47.619 23.47 0.00 42.51 2.69
27 28 1.196200 CGAGTTGGCAACGGTTTTTG 58.804 50.000 23.47 7.03 42.51 2.44
28 29 0.526739 GCGAGTTGGCAACGGTTTTT 60.527 50.000 23.47 5.98 42.51 1.94
29 30 1.065109 GCGAGTTGGCAACGGTTTT 59.935 52.632 23.47 6.75 42.51 2.43
30 31 2.115911 TGCGAGTTGGCAACGGTTT 61.116 52.632 23.47 7.15 40.59 3.27
31 32 2.515057 TGCGAGTTGGCAACGGTT 60.515 55.556 23.47 7.53 40.59 4.44
32 33 3.276846 GTGCGAGTTGGCAACGGT 61.277 61.111 23.47 8.31 45.93 4.83
33 34 4.368808 CGTGCGAGTTGGCAACGG 62.369 66.667 23.47 19.74 45.93 4.44
49 50 2.536365 TCCTTGCTAAGTAATCGTGCG 58.464 47.619 0.00 0.00 0.00 5.34
76 77 7.790782 AGGGTTGATATATTGTTTGTGGTTT 57.209 32.000 0.00 0.00 0.00 3.27
92 93 1.755179 GTGCATGCACTAGGGTTGAT 58.245 50.000 37.48 0.00 43.12 2.57
93 94 0.673333 CGTGCATGCACTAGGGTTGA 60.673 55.000 39.46 6.09 44.16 3.18
94 95 0.673333 TCGTGCATGCACTAGGGTTG 60.673 55.000 39.46 25.82 44.16 3.77
95 96 0.391661 CTCGTGCATGCACTAGGGTT 60.392 55.000 39.46 0.00 44.16 4.11
96 97 1.219124 CTCGTGCATGCACTAGGGT 59.781 57.895 39.46 0.00 44.16 4.34
97 98 0.529337 CTCTCGTGCATGCACTAGGG 60.529 60.000 37.37 34.33 44.16 3.53
98 99 0.529337 CCTCTCGTGCATGCACTAGG 60.529 60.000 37.37 34.45 44.16 3.02
99 100 0.457443 TCCTCTCGTGCATGCACTAG 59.543 55.000 39.46 37.05 44.16 2.57
104 109 1.227205 CCTCTCCTCTCGTGCATGC 60.227 63.158 11.82 11.82 0.00 4.06
112 117 3.404224 AAAACCGTTTCCTCTCCTCTC 57.596 47.619 0.00 0.00 0.00 3.20
113 118 3.477530 CAAAAACCGTTTCCTCTCCTCT 58.522 45.455 0.00 0.00 0.00 3.69
114 119 2.031069 GCAAAAACCGTTTCCTCTCCTC 60.031 50.000 0.00 0.00 0.00 3.71
115 120 1.954382 GCAAAAACCGTTTCCTCTCCT 59.046 47.619 0.00 0.00 0.00 3.69
116 121 1.679153 TGCAAAAACCGTTTCCTCTCC 59.321 47.619 0.00 0.00 0.00 3.71
136 141 1.035139 CTGGCTCACACTTGGCTTTT 58.965 50.000 0.00 0.00 0.00 2.27
138 143 1.228367 CCTGGCTCACACTTGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
145 150 2.094675 ACATTAATGCCTGGCTCACAC 58.905 47.619 21.03 0.00 0.00 3.82
148 153 2.804986 TGACATTAATGCCTGGCTCA 57.195 45.000 21.03 10.29 0.00 4.26
152 157 3.949754 ACTGTCATGACATTAATGCCTGG 59.050 43.478 28.00 14.68 41.01 4.45
219 224 0.110486 GGCAGAGGTTGGTTTGGAGA 59.890 55.000 0.00 0.00 0.00 3.71
220 225 0.111253 AGGCAGAGGTTGGTTTGGAG 59.889 55.000 0.00 0.00 0.00 3.86
259 264 2.686106 GGGGCGGTAGGAGGACAA 60.686 66.667 0.00 0.00 0.00 3.18
361 366 0.317854 GAAAACTTGGTCGGCTGCAC 60.318 55.000 0.50 0.00 0.00 4.57
362 367 1.781025 CGAAAACTTGGTCGGCTGCA 61.781 55.000 0.50 0.00 33.62 4.41
407 412 3.792114 TCCTAGACTAGAATCCACCCAGA 59.208 47.826 11.27 0.00 0.00 3.86
421 426 4.712337 ACGATGGAGTTTTGATCCTAGACT 59.288 41.667 0.00 0.00 37.74 3.24
603 633 3.374220 ACGTTCACTTTCACCGTGATA 57.626 42.857 1.09 0.00 40.70 2.15
647 867 8.418597 TGTTCCTGTTCTTACTACAGTAGAAT 57.581 34.615 14.94 0.00 41.08 2.40
650 870 8.958506 AGTATGTTCCTGTTCTTACTACAGTAG 58.041 37.037 6.00 6.00 41.08 2.57
655 875 6.395629 TGCAGTATGTTCCTGTTCTTACTAC 58.604 40.000 0.00 0.00 39.31 2.73
677 900 3.555917 AGCGGATCGTATTACTACTGC 57.444 47.619 0.00 0.00 0.00 4.40
678 901 4.227538 CCAAGCGGATCGTATTACTACTG 58.772 47.826 0.00 0.00 0.00 2.74
679 902 3.305199 GCCAAGCGGATCGTATTACTACT 60.305 47.826 0.00 0.00 0.00 2.57
749 972 0.879090 CCACTGCTTCGGTTTAACCC 59.121 55.000 8.72 0.00 33.75 4.11
759 1530 1.072159 AGGCACAGACCACTGCTTC 59.928 57.895 0.00 0.00 46.95 3.86
816 1587 3.771491 CTCTGCTGTGTGCGACGC 61.771 66.667 14.19 14.19 46.63 5.19
833 1604 3.919216 TGCTTCTTGACTAAGTCTGCTC 58.081 45.455 0.00 0.00 35.38 4.26
834 1605 4.550076 ATGCTTCTTGACTAAGTCTGCT 57.450 40.909 0.00 0.00 35.38 4.24
835 1606 4.266502 CGTATGCTTCTTGACTAAGTCTGC 59.733 45.833 0.00 0.00 35.38 4.26
836 1607 4.266502 GCGTATGCTTCTTGACTAAGTCTG 59.733 45.833 0.00 0.00 38.39 3.51
837 1608 4.425520 GCGTATGCTTCTTGACTAAGTCT 58.574 43.478 0.00 0.00 38.39 3.24
838 1609 4.763594 GCGTATGCTTCTTGACTAAGTC 57.236 45.455 0.00 0.00 38.39 3.01
939 1710 1.524037 AGGAGGAGGGATTTAAGGCC 58.476 55.000 0.00 0.00 0.00 5.19
965 1748 3.201290 GTGTGATCTGTGATGGATGGAC 58.799 50.000 0.00 0.00 0.00 4.02
969 1752 1.473965 GCGGTGTGATCTGTGATGGAT 60.474 52.381 0.00 0.00 0.00 3.41
975 1758 2.815211 CGGGCGGTGTGATCTGTG 60.815 66.667 0.00 0.00 0.00 3.66
976 1759 4.760047 GCGGGCGGTGTGATCTGT 62.760 66.667 0.00 0.00 0.00 3.41
977 1760 4.758251 TGCGGGCGGTGTGATCTG 62.758 66.667 0.00 0.00 0.00 2.90
978 1761 4.760047 GTGCGGGCGGTGTGATCT 62.760 66.667 0.00 0.00 0.00 2.75
980 1763 3.918253 AATGTGCGGGCGGTGTGAT 62.918 57.895 0.00 0.00 0.00 3.06
981 1764 4.634703 AATGTGCGGGCGGTGTGA 62.635 61.111 0.00 0.00 0.00 3.58
982 1765 4.403137 CAATGTGCGGGCGGTGTG 62.403 66.667 0.00 0.00 0.00 3.82
989 1772 2.045708 TAAGCAGGCAATGTGCGGG 61.046 57.895 0.00 0.00 46.21 6.13
990 1773 1.137404 GTAAGCAGGCAATGTGCGG 59.863 57.895 0.00 0.00 46.21 5.69
1145 1928 2.811873 GCCGGAGATATTTGATGCTGGT 60.812 50.000 5.05 0.00 0.00 4.00
1211 2102 3.024217 GCTCCTCCTCCTCCTCCT 58.976 66.667 0.00 0.00 0.00 3.69
1463 2363 2.586079 CGCAGATCAATCGCCGGT 60.586 61.111 1.90 0.00 0.00 5.28
1530 2455 1.306148 CACATACATGCAGGCTCCAG 58.694 55.000 0.00 0.00 0.00 3.86
1541 2466 7.530010 CAAACAAAACTAGCTAGCACATACAT 58.470 34.615 20.91 0.00 0.00 2.29
1580 2505 5.010922 AGAGCATGCCTGAAACACAAATTAA 59.989 36.000 15.66 0.00 0.00 1.40
1581 2506 4.523943 AGAGCATGCCTGAAACACAAATTA 59.476 37.500 15.66 0.00 0.00 1.40
1582 2507 3.322828 AGAGCATGCCTGAAACACAAATT 59.677 39.130 15.66 0.00 0.00 1.82
1663 2596 2.289565 GCCACCTTGCAGAATACTACC 58.710 52.381 0.00 0.00 0.00 3.18
1672 2605 0.313043 CAAGACTTGCCACCTTGCAG 59.687 55.000 1.43 0.00 43.21 4.41
1752 2689 6.255670 GCAAAACCCTTTCTCAGTTTTTACAG 59.744 38.462 0.00 0.00 40.69 2.74
1781 2718 3.407698 CCGGCACCTATTGTATGCAATA 58.592 45.455 14.50 14.50 42.96 1.90
1782 2719 2.229792 CCGGCACCTATTGTATGCAAT 58.770 47.619 13.75 13.75 46.14 3.56
1783 2720 1.674359 CCGGCACCTATTGTATGCAA 58.326 50.000 0.00 0.00 41.27 4.08
1820 2757 1.156736 ACAACCTCGTTGCTATGTGC 58.843 50.000 4.46 0.00 46.20 4.57
1821 2758 3.187478 CAACAACCTCGTTGCTATGTG 57.813 47.619 4.46 0.00 46.20 3.21
1863 2800 7.823745 AGATTCTGTTTGTTGTAATCTGGTT 57.176 32.000 0.00 0.00 35.98 3.67
1864 2801 7.823745 AAGATTCTGTTTGTTGTAATCTGGT 57.176 32.000 0.00 0.00 37.08 4.00
1865 2802 9.778993 CATAAGATTCTGTTTGTTGTAATCTGG 57.221 33.333 0.00 0.00 37.08 3.86
1866 2803 9.778993 CCATAAGATTCTGTTTGTTGTAATCTG 57.221 33.333 0.00 0.00 37.08 2.90
1867 2804 8.462016 GCCATAAGATTCTGTTTGTTGTAATCT 58.538 33.333 0.00 0.00 38.27 2.40
1868 2805 8.462016 AGCCATAAGATTCTGTTTGTTGTAATC 58.538 33.333 0.00 0.00 0.00 1.75
1869 2806 8.353423 AGCCATAAGATTCTGTTTGTTGTAAT 57.647 30.769 0.00 0.00 0.00 1.89
1870 2807 7.759489 AGCCATAAGATTCTGTTTGTTGTAA 57.241 32.000 0.00 0.00 0.00 2.41
1871 2808 7.759489 AAGCCATAAGATTCTGTTTGTTGTA 57.241 32.000 0.00 0.00 0.00 2.41
1872 2809 6.655078 AAGCCATAAGATTCTGTTTGTTGT 57.345 33.333 0.00 0.00 0.00 3.32
1873 2810 8.081633 TGTAAAGCCATAAGATTCTGTTTGTTG 58.918 33.333 0.00 0.00 0.00 3.33
1874 2811 8.177119 TGTAAAGCCATAAGATTCTGTTTGTT 57.823 30.769 0.00 0.00 0.00 2.83
1875 2812 7.759489 TGTAAAGCCATAAGATTCTGTTTGT 57.241 32.000 0.00 0.00 0.00 2.83
1876 2813 8.299570 AGTTGTAAAGCCATAAGATTCTGTTTG 58.700 33.333 0.00 0.00 0.00 2.93
1881 2818 8.814038 ATCAAGTTGTAAAGCCATAAGATTCT 57.186 30.769 2.11 0.00 0.00 2.40
1913 2850 4.746611 TGTAGACTTGCGCATATGATTCAG 59.253 41.667 12.75 5.24 0.00 3.02
1915 2852 5.406477 TGATGTAGACTTGCGCATATGATTC 59.594 40.000 12.75 0.00 0.00 2.52
1916 2853 5.299949 TGATGTAGACTTGCGCATATGATT 58.700 37.500 12.75 0.00 0.00 2.57
1918 2855 4.320608 TGATGTAGACTTGCGCATATGA 57.679 40.909 12.75 0.00 0.00 2.15
1920 2857 6.459066 ACTAATGATGTAGACTTGCGCATAT 58.541 36.000 12.75 1.03 0.00 1.78
1921 2858 5.842907 ACTAATGATGTAGACTTGCGCATA 58.157 37.500 12.75 0.00 0.00 3.14
1923 2860 4.123497 ACTAATGATGTAGACTTGCGCA 57.877 40.909 5.66 5.66 0.00 6.09
1924 2861 6.088749 CAGATACTAATGATGTAGACTTGCGC 59.911 42.308 0.00 0.00 0.00 6.09
1925 2862 6.088749 GCAGATACTAATGATGTAGACTTGCG 59.911 42.308 0.00 0.00 0.00 4.85
1926 2863 6.925718 TGCAGATACTAATGATGTAGACTTGC 59.074 38.462 0.00 0.00 0.00 4.01
1928 2865 8.011844 TGTGCAGATACTAATGATGTAGACTT 57.988 34.615 0.00 0.00 0.00 3.01
1929 2866 7.588497 TGTGCAGATACTAATGATGTAGACT 57.412 36.000 0.00 0.00 0.00 3.24
1958 2899 3.196901 TGGGTCTGTTAAGATACGTGCAT 59.803 43.478 0.00 0.00 34.13 3.96
1960 2901 3.241067 TGGGTCTGTTAAGATACGTGC 57.759 47.619 0.00 0.00 34.13 5.34
1988 2929 5.893824 TCTCTTGCATGAGATCCTACTAACA 59.106 40.000 24.24 2.36 38.08 2.41
2065 3017 7.969536 CAGCCATGCTACTACTATTACAATT 57.030 36.000 0.00 0.00 36.40 2.32
2090 3042 4.230455 AGAGGAGAGGGGAAATGTATGAG 58.770 47.826 0.00 0.00 0.00 2.90
2163 3120 5.702670 TGTCAGATGAAAGGTGTGATTTCTC 59.297 40.000 0.00 0.00 37.51 2.87
2164 3121 5.624159 TGTCAGATGAAAGGTGTGATTTCT 58.376 37.500 0.00 0.00 37.51 2.52
2220 3183 9.480053 CCCGTCCTAGTTTATTTCGAAATAATA 57.520 33.333 32.84 24.43 39.73 0.98
2221 3184 8.206189 TCCCGTCCTAGTTTATTTCGAAATAAT 58.794 33.333 32.84 24.58 39.73 1.28
2222 3185 7.555087 TCCCGTCCTAGTTTATTTCGAAATAA 58.445 34.615 30.31 30.31 38.65 1.40
2238 3201 3.386726 CCACACAAATATCTCCCGTCCTA 59.613 47.826 0.00 0.00 0.00 2.94
2240 3203 2.561569 CCACACAAATATCTCCCGTCC 58.438 52.381 0.00 0.00 0.00 4.79
2271 3235 5.107760 CGCAGGAATTGACAGAACAAATTTG 60.108 40.000 16.67 16.67 33.44 2.32
2312 3276 2.500229 CTCCAGCGGACCAAAGTTTTA 58.500 47.619 0.00 0.00 0.00 1.52
2387 3356 0.386838 GTTAATGCCCATCTGCTGCC 59.613 55.000 0.00 0.00 0.00 4.85
2389 3358 4.581824 ACATTAGTTAATGCCCATCTGCTG 59.418 41.667 10.90 0.00 45.24 4.41
2390 3359 4.581824 CACATTAGTTAATGCCCATCTGCT 59.418 41.667 10.90 0.00 45.24 4.24
2465 3434 8.627403 CGAAATTTACACCAGAGTAGGAGTATA 58.373 37.037 0.00 0.00 35.20 1.47
2466 3435 7.123847 ACGAAATTTACACCAGAGTAGGAGTAT 59.876 37.037 0.00 0.00 35.20 2.12
2505 3474 3.077359 AGCTGGAGCAAACATTGTACTC 58.923 45.455 0.65 0.00 45.16 2.59
2506 3475 2.816087 CAGCTGGAGCAAACATTGTACT 59.184 45.455 5.57 0.00 45.16 2.73
2507 3476 2.095059 CCAGCTGGAGCAAACATTGTAC 60.095 50.000 29.88 0.00 45.16 2.90
2516 3485 1.071987 CAGACACCAGCTGGAGCAA 59.928 57.895 39.19 0.00 45.16 3.91
2520 3489 4.007644 CCGCAGACACCAGCTGGA 62.008 66.667 39.19 0.00 38.94 3.86
2535 3508 4.755123 ACAGTTGTAAATCACTTCCTTCCG 59.245 41.667 0.00 0.00 0.00 4.30
2536 3509 5.107065 CGACAGTTGTAAATCACTTCCTTCC 60.107 44.000 0.00 0.00 0.00 3.46
2568 3544 2.404995 GCCTGTGGACAGCATCTGC 61.405 63.158 0.91 0.00 42.47 4.26
2580 3556 1.338674 TGACCGTAGAAATGGCCTGTG 60.339 52.381 3.32 0.00 34.84 3.66
2659 3635 5.641209 AGAAGTACTTGCTGAATAGTTGCTG 59.359 40.000 14.14 0.00 0.00 4.41
2668 3644 6.430000 GGGTTTATGAAGAAGTACTTGCTGAA 59.570 38.462 14.14 3.25 39.13 3.02
2669 3645 5.938125 GGGTTTATGAAGAAGTACTTGCTGA 59.062 40.000 14.14 0.00 39.13 4.26
2673 3649 4.094442 GCGGGGTTTATGAAGAAGTACTTG 59.906 45.833 14.14 0.00 39.13 3.16
2674 3650 4.259356 GCGGGGTTTATGAAGAAGTACTT 58.741 43.478 8.13 8.13 42.03 2.24
2680 3656 2.224917 ACCTTGCGGGGTTTATGAAGAA 60.225 45.455 0.68 0.00 40.03 2.52
2687 3663 2.296073 AAATGACCTTGCGGGGTTTA 57.704 45.000 1.94 0.00 40.06 2.01
2688 3664 1.419381 AAAATGACCTTGCGGGGTTT 58.581 45.000 1.94 0.00 40.06 3.27
2694 3670 2.664916 CTCACCAAAAATGACCTTGCG 58.335 47.619 0.00 0.00 0.00 4.85
2702 3679 3.558505 CGTTCTCAGCTCACCAAAAATG 58.441 45.455 0.00 0.00 0.00 2.32
2709 3686 2.049063 ACGCGTTCTCAGCTCACC 60.049 61.111 5.58 0.00 0.00 4.02
2710 3687 1.371758 TGACGCGTTCTCAGCTCAC 60.372 57.895 15.53 0.00 0.00 3.51
2713 3690 2.049063 GGTGACGCGTTCTCAGCT 60.049 61.111 15.53 0.00 34.05 4.24
2714 3691 3.112709 GGGTGACGCGTTCTCAGC 61.113 66.667 15.53 16.65 35.75 4.26
2738 3715 3.493830 AAAGTGTCGGAGCGCGTCA 62.494 57.895 8.43 0.00 0.00 4.35
2739 3716 2.717809 GAAAGTGTCGGAGCGCGTC 61.718 63.158 8.43 3.87 0.00 5.19
2740 3717 2.694829 AAGAAAGTGTCGGAGCGCGT 62.695 55.000 8.43 0.00 0.00 6.01
2741 3718 1.945776 GAAGAAAGTGTCGGAGCGCG 61.946 60.000 0.00 0.00 0.00 6.86
2742 3719 1.782181 GAAGAAAGTGTCGGAGCGC 59.218 57.895 0.00 0.00 0.00 5.92
2743 3720 0.386858 TCGAAGAAAGTGTCGGAGCG 60.387 55.000 0.00 0.00 37.84 5.03
2746 3723 7.429636 AATAAAATTCGAAGAAAGTGTCGGA 57.570 32.000 3.35 0.00 45.90 4.55
2747 3724 8.502161 AAAATAAAATTCGAAGAAAGTGTCGG 57.498 30.769 3.35 0.00 45.90 4.79
2777 3765 6.961359 AGCCAAAAACAAGTACAGAAAAAC 57.039 33.333 0.00 0.00 0.00 2.43
2778 3766 7.971183 AAAGCCAAAAACAAGTACAGAAAAA 57.029 28.000 0.00 0.00 0.00 1.94
2782 3770 5.336744 CGAAAAGCCAAAAACAAGTACAGA 58.663 37.500 0.00 0.00 0.00 3.41
2789 3777 4.333926 CCAAATCCGAAAAGCCAAAAACAA 59.666 37.500 0.00 0.00 0.00 2.83
2790 3778 3.873952 CCAAATCCGAAAAGCCAAAAACA 59.126 39.130 0.00 0.00 0.00 2.83
2795 3783 1.043816 TGCCAAATCCGAAAAGCCAA 58.956 45.000 0.00 0.00 0.00 4.52
2826 3853 9.061610 CGCAGAAGAAAAATATACACGAATTTT 57.938 29.630 0.00 0.00 36.98 1.82
2827 3854 7.696453 CCGCAGAAGAAAAATATACACGAATTT 59.304 33.333 0.00 0.00 0.00 1.82
2830 3857 5.064198 CCCGCAGAAGAAAAATATACACGAA 59.936 40.000 0.00 0.00 0.00 3.85
2831 3858 4.569162 CCCGCAGAAGAAAAATATACACGA 59.431 41.667 0.00 0.00 0.00 4.35
2832 3859 4.569162 TCCCGCAGAAGAAAAATATACACG 59.431 41.667 0.00 0.00 0.00 4.49
2833 3860 6.431198 TTCCCGCAGAAGAAAAATATACAC 57.569 37.500 0.00 0.00 0.00 2.90
2850 3877 1.739067 AGTAAATCTGTGCTTCCCGC 58.261 50.000 0.00 0.00 39.77 6.13
2851 3878 4.669197 CGAAAAGTAAATCTGTGCTTCCCG 60.669 45.833 0.00 0.00 0.00 5.14
2852 3879 4.215613 ACGAAAAGTAAATCTGTGCTTCCC 59.784 41.667 0.00 0.00 0.00 3.97
2853 3880 5.147162 CACGAAAAGTAAATCTGTGCTTCC 58.853 41.667 0.00 0.00 0.00 3.46
2854 3881 5.049680 TCCACGAAAAGTAAATCTGTGCTTC 60.050 40.000 0.00 0.00 0.00 3.86
2855 3882 4.819630 TCCACGAAAAGTAAATCTGTGCTT 59.180 37.500 0.00 0.00 0.00 3.91
2856 3883 4.385825 TCCACGAAAAGTAAATCTGTGCT 58.614 39.130 0.00 0.00 0.00 4.40
2857 3884 4.378459 CCTCCACGAAAAGTAAATCTGTGC 60.378 45.833 0.00 0.00 0.00 4.57
2858 3885 4.378459 GCCTCCACGAAAAGTAAATCTGTG 60.378 45.833 0.00 0.00 0.00 3.66
2859 3886 3.751698 GCCTCCACGAAAAGTAAATCTGT 59.248 43.478 0.00 0.00 0.00 3.41
2860 3887 3.751175 TGCCTCCACGAAAAGTAAATCTG 59.249 43.478 0.00 0.00 0.00 2.90
2861 3888 3.751698 GTGCCTCCACGAAAAGTAAATCT 59.248 43.478 0.00 0.00 31.34 2.40
2862 3889 4.079665 GTGCCTCCACGAAAAGTAAATC 57.920 45.455 0.00 0.00 31.34 2.17
2874 3901 1.534729 AAGAAAATCCGTGCCTCCAC 58.465 50.000 0.00 0.00 38.62 4.02
2875 3902 2.159382 GAAAGAAAATCCGTGCCTCCA 58.841 47.619 0.00 0.00 0.00 3.86
2912 3939 8.614469 TGTGGAAGAAAAAGAAAACATGTTTT 57.386 26.923 31.40 31.40 44.59 2.43
2913 3940 8.614469 TTGTGGAAGAAAAAGAAAACATGTTT 57.386 26.923 18.13 18.13 0.00 2.83
2914 3941 8.093927 TCTTGTGGAAGAAAAAGAAAACATGTT 58.906 29.630 4.92 4.92 35.14 2.71
2915 3942 7.610865 TCTTGTGGAAGAAAAAGAAAACATGT 58.389 30.769 0.00 0.00 35.14 3.21
2916 3943 7.975616 TCTCTTGTGGAAGAAAAAGAAAACATG 59.024 33.333 0.00 0.00 37.77 3.21
2917 3944 7.976175 GTCTCTTGTGGAAGAAAAAGAAAACAT 59.024 33.333 0.00 0.00 37.77 2.71
2918 3945 7.040062 TGTCTCTTGTGGAAGAAAAAGAAAACA 60.040 33.333 0.00 0.00 37.77 2.83
2919 3946 7.273598 GTGTCTCTTGTGGAAGAAAAAGAAAAC 59.726 37.037 0.00 0.00 37.77 2.43
2920 3947 7.040062 TGTGTCTCTTGTGGAAGAAAAAGAAAA 60.040 33.333 0.00 0.00 37.77 2.29
2921 3948 6.432783 TGTGTCTCTTGTGGAAGAAAAAGAAA 59.567 34.615 0.00 0.00 37.77 2.52
2924 3951 5.586243 TCTGTGTCTCTTGTGGAAGAAAAAG 59.414 40.000 0.00 0.00 37.77 2.27
2929 3956 4.963318 AATCTGTGTCTCTTGTGGAAGA 57.037 40.909 0.00 0.00 36.72 2.87
2933 3960 6.226787 AGAAGTAAATCTGTGTCTCTTGTGG 58.773 40.000 0.00 0.00 0.00 4.17
2956 3983 1.659098 GCAAATCCGTACCTTCACGAG 59.341 52.381 0.00 0.00 44.69 4.18
2962 3989 2.224670 TGTGGAAGCAAATCCGTACCTT 60.225 45.455 0.00 0.00 42.76 3.50
2964 3991 1.816074 TGTGGAAGCAAATCCGTACC 58.184 50.000 0.00 0.00 42.76 3.34
2966 3993 3.334691 CTCTTGTGGAAGCAAATCCGTA 58.665 45.455 0.00 0.00 42.76 4.02
2970 3997 3.565905 CACCTCTTGTGGAAGCAAATC 57.434 47.619 0.00 0.00 41.52 2.17
2981 4008 0.317479 GGCACGACTACACCTCTTGT 59.683 55.000 0.00 0.00 42.84 3.16
2987 4014 1.443872 CGAGTGGCACGACTACACC 60.444 63.158 12.71 0.00 35.79 4.16
2989 4016 0.669619 TTTCGAGTGGCACGACTACA 59.330 50.000 12.71 0.00 39.46 2.74
2990 4017 1.774639 TTTTCGAGTGGCACGACTAC 58.225 50.000 12.71 2.24 39.46 2.73
2994 4021 1.370609 TTGTTTTTCGAGTGGCACGA 58.629 45.000 12.71 3.74 37.99 4.35
3026 4065 2.218603 GTGCCTCTCACGGAAGAAAAA 58.781 47.619 0.00 0.00 35.76 1.94
3027 4066 1.878953 GTGCCTCTCACGGAAGAAAA 58.121 50.000 0.00 0.00 35.76 2.29
3036 4075 4.826556 AGAAGTAAATCTGTGCCTCTCAC 58.173 43.478 0.00 0.00 45.82 3.51
3048 4087 6.913170 TGTGGAAGCAAATGAGAAGTAAATC 58.087 36.000 0.00 0.00 0.00 2.17
3052 4091 4.041567 TCCTGTGGAAGCAAATGAGAAGTA 59.958 41.667 0.00 0.00 0.00 2.24
3053 4092 3.152341 CCTGTGGAAGCAAATGAGAAGT 58.848 45.455 0.00 0.00 0.00 3.01
3054 4093 3.415212 TCCTGTGGAAGCAAATGAGAAG 58.585 45.455 0.00 0.00 0.00 2.85
3056 4095 2.290514 CCTCCTGTGGAAGCAAATGAGA 60.291 50.000 0.00 0.00 0.00 3.27
3057 4096 2.089980 CCTCCTGTGGAAGCAAATGAG 58.910 52.381 0.00 0.00 0.00 2.90
3058 4097 1.704628 TCCTCCTGTGGAAGCAAATGA 59.295 47.619 0.00 0.00 32.39 2.57
3059 4098 1.815003 GTCCTCCTGTGGAAGCAAATG 59.185 52.381 0.00 0.00 37.93 2.32
3065 4115 0.244994 CGACTGTCCTCCTGTGGAAG 59.755 60.000 1.55 0.00 37.93 3.46
3070 4120 2.574955 GGCACGACTGTCCTCCTGT 61.575 63.158 1.55 0.00 0.00 4.00
3072 4122 1.122019 AAAGGCACGACTGTCCTCCT 61.122 55.000 1.55 3.51 0.00 3.69
3073 4123 0.670854 GAAAGGCACGACTGTCCTCC 60.671 60.000 1.55 1.17 0.00 4.30
3076 4126 3.550656 CGAAAGGCACGACTGTCC 58.449 61.111 1.55 0.00 0.00 4.02
3124 4174 7.550597 AGAAATAGATATGTGCCTCTCATGA 57.449 36.000 0.00 0.00 0.00 3.07
3125 4175 6.530887 CGAGAAATAGATATGTGCCTCTCATG 59.469 42.308 0.00 0.00 0.00 3.07
3127 4177 5.536538 ACGAGAAATAGATATGTGCCTCTCA 59.463 40.000 0.00 0.00 0.00 3.27
3128 4178 5.861251 CACGAGAAATAGATATGTGCCTCTC 59.139 44.000 0.00 0.00 0.00 3.20
3136 4186 5.117745 CACGCTTCCACGAGAAATAGATATG 59.882 44.000 0.00 0.00 32.88 1.78
3138 4188 4.499188 CCACGCTTCCACGAGAAATAGATA 60.499 45.833 0.00 0.00 32.88 1.98
3150 4200 2.415512 GACTGTAAATCCACGCTTCCAC 59.584 50.000 0.00 0.00 0.00 4.02
3151 4201 2.695359 GACTGTAAATCCACGCTTCCA 58.305 47.619 0.00 0.00 0.00 3.53
3155 4205 1.710013 CACGACTGTAAATCCACGCT 58.290 50.000 0.00 0.00 0.00 5.07
3158 4208 2.000447 GAGGCACGACTGTAAATCCAC 59.000 52.381 0.00 0.00 0.00 4.02
3166 4216 0.387929 TTTTCGAGAGGCACGACTGT 59.612 50.000 0.00 0.00 39.46 3.55
3167 4217 1.457303 CTTTTTCGAGAGGCACGACTG 59.543 52.381 0.00 0.00 39.46 3.51
3205 4264 0.107410 AGGCACACCACTCACGAAAA 60.107 50.000 0.00 0.00 39.06 2.29
3249 4308 4.504165 TCGGTGCCTCTCACAGAATAAAAA 60.504 41.667 0.00 0.00 44.76 1.94
3250 4309 3.007506 TCGGTGCCTCTCACAGAATAAAA 59.992 43.478 0.00 0.00 44.76 1.52
3251 4310 2.565391 TCGGTGCCTCTCACAGAATAAA 59.435 45.455 0.00 0.00 44.76 1.40
3252 4311 2.176045 TCGGTGCCTCTCACAGAATAA 58.824 47.619 0.00 0.00 44.76 1.40
3253 4312 1.847328 TCGGTGCCTCTCACAGAATA 58.153 50.000 0.00 0.00 44.76 1.75
3259 4561 2.674796 AGTAAATCGGTGCCTCTCAC 57.325 50.000 0.00 0.00 44.90 3.51
3270 4572 3.797039 TGCCTCCATGAGAAGTAAATCG 58.203 45.455 0.00 0.00 0.00 3.34
3271 4573 5.028549 TCTGCCTCCATGAGAAGTAAATC 57.971 43.478 0.00 0.00 0.00 2.17
3278 4580 7.170965 GGAATAAATATCTGCCTCCATGAGAA 58.829 38.462 0.00 0.00 0.00 2.87
3342 4659 3.873952 AGAAATAGATTTGTGCCTCTCGC 59.126 43.478 0.00 0.00 38.31 5.03
3343 4660 5.111989 TGAGAAATAGATTTGTGCCTCTCG 58.888 41.667 0.00 0.00 0.00 4.04
3344 4661 6.017275 CCATGAGAAATAGATTTGTGCCTCTC 60.017 42.308 0.00 0.00 0.00 3.20
3345 4662 5.826737 CCATGAGAAATAGATTTGTGCCTCT 59.173 40.000 0.00 0.00 0.00 3.69
3346 4663 5.824624 TCCATGAGAAATAGATTTGTGCCTC 59.175 40.000 0.00 0.00 0.00 4.70
3347 4664 5.759059 TCCATGAGAAATAGATTTGTGCCT 58.241 37.500 0.00 0.00 0.00 4.75
3348 4665 5.009410 CCTCCATGAGAAATAGATTTGTGCC 59.991 44.000 0.00 0.00 0.00 5.01
3350 4667 5.591472 TGCCTCCATGAGAAATAGATTTGTG 59.409 40.000 0.00 0.00 0.00 3.33
3351 4668 5.759059 TGCCTCCATGAGAAATAGATTTGT 58.241 37.500 0.00 0.00 0.00 2.83
3352 4669 6.896021 ATGCCTCCATGAGAAATAGATTTG 57.104 37.500 0.00 0.00 0.00 2.32
3366 4688 2.954318 GACTGCAAATACATGCCTCCAT 59.046 45.455 0.00 0.00 45.83 3.41
3426 4748 1.136147 CTGAGATGCACGCCTTTGC 59.864 57.895 0.00 0.00 43.31 3.68
3427 4749 1.159285 TTCTGAGATGCACGCCTTTG 58.841 50.000 0.00 0.00 0.00 2.77
3428 4750 1.896220 TTTCTGAGATGCACGCCTTT 58.104 45.000 0.00 0.00 0.00 3.11
3429 4751 1.808945 CTTTTCTGAGATGCACGCCTT 59.191 47.619 0.00 0.00 0.00 4.35
3430 4752 1.002430 TCTTTTCTGAGATGCACGCCT 59.998 47.619 0.00 0.00 0.00 5.52
3431 4753 1.442769 TCTTTTCTGAGATGCACGCC 58.557 50.000 0.00 0.00 0.00 5.68
3432 4754 3.542712 TTTCTTTTCTGAGATGCACGC 57.457 42.857 0.00 0.00 0.00 5.34
3481 4803 5.738909 CCTCCATGAGAAGTAAATCTGTGT 58.261 41.667 0.00 0.00 0.00 3.72
3486 4808 3.557595 CGTGCCTCCATGAGAAGTAAATC 59.442 47.826 0.00 0.00 0.00 2.17
3515 4837 2.811317 CTGTGCCTCTCGCGGAAC 60.811 66.667 6.13 0.00 42.08 3.62
3519 4841 2.163390 CATGACTGTGCCTCTCGCG 61.163 63.158 0.00 0.00 42.08 5.87
3520 4842 2.459442 GCATGACTGTGCCTCTCGC 61.459 63.158 0.00 0.00 39.18 5.03
3521 4843 3.791539 GCATGACTGTGCCTCTCG 58.208 61.111 0.00 0.00 39.18 4.04
3577 4899 1.533625 CGTGCCTCTCATGGGAAAAA 58.466 50.000 0.00 0.00 0.00 1.94
3578 4900 0.322456 CCGTGCCTCTCATGGGAAAA 60.322 55.000 0.00 0.00 46.05 2.29
3579 4901 1.299648 CCGTGCCTCTCATGGGAAA 59.700 57.895 0.00 0.00 46.05 3.13
3580 4902 2.989639 CCGTGCCTCTCATGGGAA 59.010 61.111 0.00 0.00 46.05 3.97
3584 4906 0.379669 GCAAATCCGTGCCTCTCATG 59.620 55.000 0.00 0.00 38.66 3.07
3585 4907 0.254178 AGCAAATCCGTGCCTCTCAT 59.746 50.000 0.00 0.00 46.14 2.90
3586 4908 0.036732 AAGCAAATCCGTGCCTCTCA 59.963 50.000 0.00 0.00 46.14 3.27
3587 4909 0.729690 GAAGCAAATCCGTGCCTCTC 59.270 55.000 0.00 0.00 46.14 3.20
3588 4910 0.326264 AGAAGCAAATCCGTGCCTCT 59.674 50.000 0.00 0.00 46.14 3.69
3589 4911 0.729690 GAGAAGCAAATCCGTGCCTC 59.270 55.000 0.00 0.00 46.14 4.70
3590 4912 0.036732 TGAGAAGCAAATCCGTGCCT 59.963 50.000 0.00 0.00 46.14 4.75
3591 4913 1.064654 GATGAGAAGCAAATCCGTGCC 59.935 52.381 0.00 0.00 46.14 5.01
3592 4914 1.064654 GGATGAGAAGCAAATCCGTGC 59.935 52.381 0.00 0.00 45.28 5.34
3593 4915 2.353889 CTGGATGAGAAGCAAATCCGTG 59.646 50.000 0.00 0.00 42.43 4.94
3594 4916 2.636830 CTGGATGAGAAGCAAATCCGT 58.363 47.619 0.00 0.00 42.43 4.69
3595 4917 1.945394 CCTGGATGAGAAGCAAATCCG 59.055 52.381 0.00 0.00 42.43 4.18
3596 4918 1.680207 GCCTGGATGAGAAGCAAATCC 59.320 52.381 0.00 0.00 40.34 3.01
3597 4919 2.372264 TGCCTGGATGAGAAGCAAATC 58.628 47.619 0.00 0.00 0.00 2.17
3598 4920 2.519771 TGCCTGGATGAGAAGCAAAT 57.480 45.000 0.00 0.00 0.00 2.32
3599 4921 2.519771 ATGCCTGGATGAGAAGCAAA 57.480 45.000 0.00 0.00 36.95 3.68
3600 4922 2.773661 TCTATGCCTGGATGAGAAGCAA 59.226 45.455 0.00 0.00 36.95 3.91
3601 4923 2.401568 TCTATGCCTGGATGAGAAGCA 58.598 47.619 0.00 0.00 37.94 3.91
3602 4924 3.699411 ATCTATGCCTGGATGAGAAGC 57.301 47.619 0.00 0.00 0.00 3.86
3603 4925 4.215827 GCAAATCTATGCCTGGATGAGAAG 59.784 45.833 0.00 0.00 40.49 2.85
3604 4926 4.139786 GCAAATCTATGCCTGGATGAGAA 58.860 43.478 0.00 0.00 40.49 2.87
3605 4927 3.748083 GCAAATCTATGCCTGGATGAGA 58.252 45.455 0.00 0.00 40.49 3.27
3626 4948 0.039074 AACTGTGTCTCTCGCGGAAG 60.039 55.000 6.13 4.04 36.80 3.46
3627 4949 0.318699 CAACTGTGTCTCTCGCGGAA 60.319 55.000 6.13 0.00 36.80 4.30
3628 4950 1.285950 CAACTGTGTCTCTCGCGGA 59.714 57.895 6.13 1.01 36.80 5.54
3629 4951 1.007271 ACAACTGTGTCTCTCGCGG 60.007 57.895 6.13 0.00 38.73 6.46
3630 4952 1.278172 CCACAACTGTGTCTCTCGCG 61.278 60.000 0.00 0.00 44.21 5.87
3631 4953 1.560860 GCCACAACTGTGTCTCTCGC 61.561 60.000 8.93 0.64 44.21 5.03
3632 4954 0.032678 AGCCACAACTGTGTCTCTCG 59.967 55.000 8.93 0.00 44.21 4.04
3633 4955 2.246719 AAGCCACAACTGTGTCTCTC 57.753 50.000 8.93 0.00 44.21 3.20
3634 4956 2.717639 AAAGCCACAACTGTGTCTCT 57.282 45.000 8.93 0.90 44.21 3.10
3635 4957 2.682856 TGAAAAGCCACAACTGTGTCTC 59.317 45.455 8.93 0.00 44.21 3.36
3636 4958 2.684881 CTGAAAAGCCACAACTGTGTCT 59.315 45.455 8.93 0.00 44.21 3.41
3637 4959 2.682856 TCTGAAAAGCCACAACTGTGTC 59.317 45.455 8.93 0.00 44.21 3.67
3638 4960 2.722094 TCTGAAAAGCCACAACTGTGT 58.278 42.857 8.93 0.00 44.21 3.72
3639 4961 3.996150 ATCTGAAAAGCCACAACTGTG 57.004 42.857 2.72 2.72 45.23 3.66
3640 4962 4.074970 CCTATCTGAAAAGCCACAACTGT 58.925 43.478 0.00 0.00 0.00 3.55
3641 4963 3.441572 CCCTATCTGAAAAGCCACAACTG 59.558 47.826 0.00 0.00 0.00 3.16
3642 4964 3.562176 CCCCTATCTGAAAAGCCACAACT 60.562 47.826 0.00 0.00 0.00 3.16
3643 4965 2.755103 CCCCTATCTGAAAAGCCACAAC 59.245 50.000 0.00 0.00 0.00 3.32
3644 4966 2.291540 CCCCCTATCTGAAAAGCCACAA 60.292 50.000 0.00 0.00 0.00 3.33
3645 4967 1.284785 CCCCCTATCTGAAAAGCCACA 59.715 52.381 0.00 0.00 0.00 4.17
3646 4968 1.564348 TCCCCCTATCTGAAAAGCCAC 59.436 52.381 0.00 0.00 0.00 5.01
3647 4969 1.979809 TCCCCCTATCTGAAAAGCCA 58.020 50.000 0.00 0.00 0.00 4.75
3648 4970 3.382083 TTTCCCCCTATCTGAAAAGCC 57.618 47.619 0.00 0.00 0.00 4.35
3649 4971 4.711846 ACATTTTCCCCCTATCTGAAAAGC 59.288 41.667 0.00 0.00 40.23 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.