Multiple sequence alignment - TraesCS2B01G229400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G229400 chr2B 100.000 3810 0 0 1 3810 224656791 224652982 0.000000e+00 7036.0
1 TraesCS2B01G229400 chr2B 100.000 3242 0 0 4081 7322 224652711 224649470 0.000000e+00 5987.0
2 TraesCS2B01G229400 chr2B 91.451 889 43 13 1 889 639440212 639439357 0.000000e+00 1190.0
3 TraesCS2B01G229400 chr2B 91.837 833 35 12 1 833 730607976 730608775 0.000000e+00 1131.0
4 TraesCS2B01G229400 chr2B 93.842 406 22 3 1 405 730607742 730608145 6.280000e-170 608.0
5 TraesCS2B01G229400 chr2B 89.062 64 4 2 2103 2163 742820325 742820262 7.880000e-10 76.8
6 TraesCS2B01G229400 chr2B 85.185 54 6 2 2079 2130 359682742 359682689 4.000000e-03 54.7
7 TraesCS2B01G229400 chr2A 96.771 1765 45 8 4097 5852 176673978 176672217 0.000000e+00 2933.0
8 TraesCS2B01G229400 chr2A 94.866 1305 26 9 6046 7322 176672222 176670931 0.000000e+00 2001.0
9 TraesCS2B01G229400 chr2A 93.889 1260 54 8 889 2131 176677677 176676424 0.000000e+00 1879.0
10 TraesCS2B01G229400 chr2A 96.671 691 20 3 3122 3810 176674993 176674304 0.000000e+00 1146.0
11 TraesCS2B01G229400 chr2A 97.232 542 14 1 2132 2672 176676397 176675856 0.000000e+00 917.0
12 TraesCS2B01G229400 chr2A 93.689 206 13 0 2764 2969 176675851 176675646 7.130000e-80 309.0
13 TraesCS2B01G229400 chr2A 96.795 156 4 1 2968 3122 176675609 176675454 7.290000e-65 259.0
14 TraesCS2B01G229400 chr2A 94.969 159 3 1 5849 6007 688640833 688640986 2.040000e-60 244.0
15 TraesCS2B01G229400 chr2A 94.000 150 9 0 4655 4804 141506318 141506467 2.060000e-55 228.0
16 TraesCS2B01G229400 chr2A 89.474 57 3 1 2104 2157 699796402 699796346 1.320000e-07 69.4
17 TraesCS2B01G229400 chr2D 95.285 1824 45 12 889 2672 163013478 163015300 0.000000e+00 2854.0
18 TraesCS2B01G229400 chr2D 96.231 1751 46 6 4103 5852 163017131 163018862 0.000000e+00 2850.0
19 TraesCS2B01G229400 chr2D 93.462 1300 26 17 6046 7322 163018857 163020120 0.000000e+00 1875.0
20 TraesCS2B01G229400 chr2D 95.088 855 30 3 2968 3810 163015548 163016402 0.000000e+00 1336.0
21 TraesCS2B01G229400 chr2D 94.860 214 8 2 2753 2966 163015298 163015508 1.520000e-86 331.0
22 TraesCS2B01G229400 chr2D 89.474 57 3 1 2104 2157 559209302 559209246 1.320000e-07 69.4
23 TraesCS2B01G229400 chr2D 97.500 40 0 1 6011 6050 367919990 367920028 4.740000e-07 67.6
24 TraesCS2B01G229400 chr7B 95.857 893 32 3 1 888 515414215 515415107 0.000000e+00 1439.0
25 TraesCS2B01G229400 chr7B 92.351 889 35 12 1 889 653063927 653064782 0.000000e+00 1234.0
26 TraesCS2B01G229400 chr7B 91.564 889 41 13 1 888 95011295 95012150 0.000000e+00 1195.0
27 TraesCS2B01G229400 chr7B 94.375 160 3 2 5841 5999 588861855 588861701 2.640000e-59 241.0
28 TraesCS2B01G229400 chr5B 91.226 889 42 20 1 888 122446317 122447170 0.000000e+00 1177.0
29 TraesCS2B01G229400 chr5B 94.089 406 21 3 1 405 122445751 122446154 1.350000e-171 614.0
30 TraesCS2B01G229400 chr5B 90.154 325 26 3 571 889 704907577 704907901 1.140000e-112 418.0
31 TraesCS2B01G229400 chr5B 81.473 421 57 10 476 889 697238080 697238486 7.080000e-85 326.0
32 TraesCS2B01G229400 chr5B 94.253 174 10 0 395 568 704907371 704907544 4.360000e-67 267.0
33 TraesCS2B01G229400 chr5B 94.118 85 5 0 2671 2755 218214434 218214350 5.960000e-26 130.0
34 TraesCS2B01G229400 chr5B 90.476 42 1 1 5430 5471 610928755 610928793 1.300000e-02 52.8
35 TraesCS2B01G229400 chr3B 95.949 469 18 1 1 469 56748113 56748580 0.000000e+00 760.0
36 TraesCS2B01G229400 chr3B 96.923 390 12 0 499 888 56748577 56748966 0.000000e+00 654.0
37 TraesCS2B01G229400 chr3B 80.317 442 56 15 395 822 120597700 120598124 9.230000e-79 305.0
38 TraesCS2B01G229400 chr3B 92.357 157 11 1 4658 4813 396272028 396271872 9.560000e-54 222.0
39 TraesCS2B01G229400 chr3B 89.720 107 7 3 2663 2766 253630735 253630840 4.610000e-27 134.0
40 TraesCS2B01G229400 chr3B 93.333 90 6 0 2668 2757 485411931 485412020 4.610000e-27 134.0
41 TraesCS2B01G229400 chr3B 88.679 106 9 2 2663 2766 253663780 253663884 7.710000e-25 126.0
42 TraesCS2B01G229400 chr5D 81.548 504 71 12 392 888 343655082 343655570 5.320000e-106 396.0
43 TraesCS2B01G229400 chr5D 100.000 38 0 0 6013 6050 111788711 111788748 3.660000e-08 71.3
44 TraesCS2B01G229400 chr6B 80.242 496 64 22 398 881 130480773 130480300 7.030000e-90 342.0
45 TraesCS2B01G229400 chr6B 91.176 102 8 1 2658 2758 710798782 710798883 3.560000e-28 137.0
46 TraesCS2B01G229400 chr6B 91.176 102 8 1 2658 2758 711418739 711418638 3.560000e-28 137.0
47 TraesCS2B01G229400 chr6B 100.000 37 0 0 6013 6049 290638516 290638552 1.320000e-07 69.4
48 TraesCS2B01G229400 chr7A 95.597 159 5 2 5849 6007 431992735 431992891 3.390000e-63 254.0
49 TraesCS2B01G229400 chr3D 94.340 159 5 3 5841 5999 490735481 490735635 2.640000e-59 241.0
50 TraesCS2B01G229400 chr3D 94.340 159 4 1 5849 6007 581983445 581983598 9.490000e-59 239.0
51 TraesCS2B01G229400 chr3D 100.000 37 0 0 6013 6049 379823846 379823882 1.320000e-07 69.4
52 TraesCS2B01G229400 chr3D 91.837 49 3 1 6015 6062 520722639 520722591 4.740000e-07 67.6
53 TraesCS2B01G229400 chr5A 93.827 162 4 2 5838 5999 687682575 687682730 9.490000e-59 239.0
54 TraesCS2B01G229400 chr4D 91.573 178 8 5 5833 6009 465124392 465124221 9.490000e-59 239.0
55 TraesCS2B01G229400 chr4D 89.899 99 10 0 2658 2756 23884318 23884416 2.140000e-25 128.0
56 TraesCS2B01G229400 chr4D 95.745 47 2 0 590 636 19885634 19885588 7.880000e-10 76.8
57 TraesCS2B01G229400 chr1D 94.340 159 4 2 5841 5999 331539437 331539284 9.490000e-59 239.0
58 TraesCS2B01G229400 chr1D 89.394 66 6 1 5428 5493 485070541 485070477 1.690000e-11 82.4
59 TraesCS2B01G229400 chr7D 93.827 162 3 3 5839 5999 192936194 192936039 3.410000e-58 237.0
60 TraesCS2B01G229400 chr7D 94.186 86 5 0 2670 2755 49828861 49828776 1.660000e-26 132.0
61 TraesCS2B01G229400 chr7D 88.525 61 5 2 5433 5493 572719424 572719482 1.020000e-08 73.1
62 TraesCS2B01G229400 chr7D 100.000 37 0 0 6013 6049 101559175 101559139 1.320000e-07 69.4
63 TraesCS2B01G229400 chr4B 93.210 162 10 1 4654 4814 106227562 106227401 3.410000e-58 237.0
64 TraesCS2B01G229400 chr4B 89.865 148 13 2 419 565 613220386 613220240 9.700000e-44 189.0
65 TraesCS2B01G229400 chr1B 90.341 176 15 2 395 568 52408745 52408570 5.710000e-56 230.0
66 TraesCS2B01G229400 chr1B 77.982 218 21 19 5849 6061 478590625 478590820 2.160000e-20 111.0
67 TraesCS2B01G229400 chr1B 86.441 59 6 2 5433 5491 9845150 9845094 6.130000e-06 63.9
68 TraesCS2B01G229400 chr1B 86.792 53 6 1 2079 2130 597312307 597312255 2.850000e-04 58.4
69 TraesCS2B01G229400 chr1B 85.185 54 6 2 2079 2130 357090465 357090518 4.000000e-03 54.7
70 TraesCS2B01G229400 chr6D 93.464 153 10 0 4652 4804 392273229 392273077 2.060000e-55 228.0
71 TraesCS2B01G229400 chr6D 90.058 171 12 5 4642 4810 127200822 127200655 4.450000e-52 217.0
72 TraesCS2B01G229400 chr6D 85.185 54 6 2 2079 2130 295920160 295920213 4.000000e-03 54.7
73 TraesCS2B01G229400 chr6A 93.421 152 10 0 4652 4803 538097834 538097683 7.390000e-55 226.0
74 TraesCS2B01G229400 chr6A 87.097 62 6 2 5433 5493 441300029 441300089 1.320000e-07 69.4
75 TraesCS2B01G229400 chr6A 89.796 49 4 1 5445 5493 510239720 510239767 2.210000e-05 62.1
76 TraesCS2B01G229400 chr1A 91.875 160 10 3 4651 4807 155857864 155857705 3.440000e-53 220.0
77 TraesCS2B01G229400 chr3A 93.182 88 6 0 2671 2758 399897426 399897339 5.960000e-26 130.0
78 TraesCS2B01G229400 chr3A 91.304 46 3 1 6018 6062 656108968 656108923 2.210000e-05 62.1
79 TraesCS2B01G229400 chr4A 78.151 119 21 3 7006 7123 450765039 450765153 3.660000e-08 71.3
80 TraesCS2B01G229400 chrUn 95.349 43 0 2 6015 6057 87983146 87983106 4.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G229400 chr2B 224649470 224656791 7321 True 6511.500000 7036 100.000000 1 7322 2 chr2B.!!$R4 7321
1 TraesCS2B01G229400 chr2B 639439357 639440212 855 True 1190.000000 1190 91.451000 1 889 1 chr2B.!!$R2 888
2 TraesCS2B01G229400 chr2B 730607742 730608775 1033 False 869.500000 1131 92.839500 1 833 2 chr2B.!!$F1 832
3 TraesCS2B01G229400 chr2A 176670931 176677677 6746 True 1349.142857 2933 95.701857 889 7322 7 chr2A.!!$R2 6433
4 TraesCS2B01G229400 chr2D 163013478 163020120 6642 False 1849.200000 2854 94.985200 889 7322 5 chr2D.!!$F2 6433
5 TraesCS2B01G229400 chr7B 515414215 515415107 892 False 1439.000000 1439 95.857000 1 888 1 chr7B.!!$F2 887
6 TraesCS2B01G229400 chr7B 653063927 653064782 855 False 1234.000000 1234 92.351000 1 889 1 chr7B.!!$F3 888
7 TraesCS2B01G229400 chr7B 95011295 95012150 855 False 1195.000000 1195 91.564000 1 888 1 chr7B.!!$F1 887
8 TraesCS2B01G229400 chr5B 122445751 122447170 1419 False 895.500000 1177 92.657500 1 888 2 chr5B.!!$F3 887
9 TraesCS2B01G229400 chr5B 704907371 704907901 530 False 342.500000 418 92.203500 395 889 2 chr5B.!!$F4 494
10 TraesCS2B01G229400 chr3B 56748113 56748966 853 False 707.000000 760 96.436000 1 888 2 chr3B.!!$F5 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1849 0.611896 AAATCCCTCCACAAAGGCCG 60.612 55.0 0.00 0.00 37.29 6.13 F
1029 1887 0.676782 GAATGGCCACGGTAGTGCTT 60.677 55.0 8.16 0.00 46.62 3.91 F
1894 2753 0.853530 AGAAGTGGTTTGGCTCCCTT 59.146 50.0 0.00 0.00 0.00 3.95 F
2686 3573 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.0 0.00 0.00 0.00 4.00 F
4385 6227 0.123266 TCCTCCCCAGAATTCCCCTT 59.877 55.0 0.65 0.00 0.00 3.95 F
5973 7823 0.177836 CATCCGCATGTGGTAGTCCA 59.822 55.0 24.28 4.84 42.05 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2961 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.0 0.0 0.00 3.67 R
2672 3559 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.0 0.0 0.00 4.30 R
2907 3797 1.758280 ACCAACCAGCGTCCGAATATA 59.242 47.619 0.0 0.0 0.00 0.86 R
4656 6498 2.649531 ACATTTGTGAACGGAGGGAA 57.350 45.000 0.0 0.0 0.00 3.97 R
6008 7858 0.106167 CTCCCTCCGTCCCATACAGA 60.106 60.000 0.0 0.0 0.00 3.41 R
6999 8887 0.395686 CCATGTGCAGGATCTCCGAT 59.604 55.000 0.0 0.0 42.08 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 265 8.558973 TTCAAATTTTGTTCACAAGGAAACAT 57.441 26.923 8.89 0.00 37.23 2.71
766 1605 0.905357 AGTCAGGGGTTCGAATCCTG 59.095 55.000 29.42 29.42 46.91 3.86
939 1797 4.634133 GACCACGACGACGGCACA 62.634 66.667 12.58 0.00 44.46 4.57
962 1820 1.745653 CCTTCCATTCCTTTCCTTCGC 59.254 52.381 0.00 0.00 0.00 4.70
964 1822 1.821216 TCCATTCCTTTCCTTCGCAC 58.179 50.000 0.00 0.00 0.00 5.34
980 1838 1.313091 GCACCAACCCGAAATCCCTC 61.313 60.000 0.00 0.00 0.00 4.30
983 1841 0.679960 CCAACCCGAAATCCCTCCAC 60.680 60.000 0.00 0.00 0.00 4.02
991 1849 0.611896 AAATCCCTCCACAAAGGCCG 60.612 55.000 0.00 0.00 37.29 6.13
1023 1881 3.083848 ATCGCGAATGGCCACGGTA 62.084 57.895 15.24 0.00 38.94 4.02
1029 1887 0.676782 GAATGGCCACGGTAGTGCTT 60.677 55.000 8.16 0.00 46.62 3.91
1184 2042 4.410400 CCACGCCTCCTCCCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
1234 2093 2.572284 CCACGTCTTCCGAGGTCC 59.428 66.667 0.00 0.00 41.74 4.46
1277 2136 0.916358 ATGGTCTGGTTCAGGAGGGG 60.916 60.000 0.00 0.00 31.51 4.79
1289 2148 1.990614 GGAGGGGGTTCTCGAGCTT 60.991 63.158 7.81 0.00 34.74 3.74
1301 2160 2.164026 CGAGCTTCTCAAGAGCGCC 61.164 63.158 2.29 0.00 0.00 6.53
1494 2353 0.882484 TTGCGTGTCCTGCGATTGAA 60.882 50.000 0.00 0.00 34.24 2.69
1520 2379 2.249413 CTCTCAGGTTCTGGGCGCAT 62.249 60.000 10.83 0.00 30.92 4.73
1610 2469 1.753903 TGGAGGGGGATGTCAAGAAA 58.246 50.000 0.00 0.00 0.00 2.52
1623 2482 2.162408 GTCAAGAAAGCCATGCAGGTAC 59.838 50.000 0.00 0.00 40.61 3.34
1894 2753 0.853530 AGAAGTGGTTTGGCTCCCTT 59.146 50.000 0.00 0.00 0.00 3.95
1895 2754 2.039879 GAGAAGTGGTTTGGCTCCCTTA 59.960 50.000 0.00 0.00 0.00 2.69
2045 2905 8.994429 ATAAATACATTTGTTTTTGCATCGGA 57.006 26.923 8.72 0.00 32.80 4.55
2047 2907 6.704512 ATACATTTGTTTTTGCATCGGAAC 57.295 33.333 0.00 0.00 0.00 3.62
2131 2991 3.991773 CTCCGTTCCAAAATAAGTGTCGA 59.008 43.478 0.00 0.00 0.00 4.20
2132 2992 3.742369 TCCGTTCCAAAATAAGTGTCGAC 59.258 43.478 9.11 9.11 0.00 4.20
2133 2993 3.495377 CCGTTCCAAAATAAGTGTCGACA 59.505 43.478 15.76 15.76 0.00 4.35
2134 2994 4.451557 CGTTCCAAAATAAGTGTCGACAC 58.548 43.478 35.83 35.83 46.77 3.67
2489 3376 4.451096 GTGATTTTCTGTTGGCGTCTCTAA 59.549 41.667 0.00 0.00 0.00 2.10
2594 3481 4.574674 ATTCTAGATCCAACAACTGCCA 57.425 40.909 0.00 0.00 0.00 4.92
2672 3559 7.552687 TCATTCAGGACATAGAAAACCATGTAC 59.447 37.037 0.00 0.00 35.55 2.90
2674 3561 6.640518 TCAGGACATAGAAAACCATGTACTC 58.359 40.000 0.00 0.00 41.55 2.59
2676 3563 5.104485 AGGACATAGAAAACCATGTACTCCC 60.104 44.000 0.00 0.00 41.55 4.30
2677 3564 5.104485 GGACATAGAAAACCATGTACTCCCT 60.104 44.000 0.00 0.00 35.55 4.20
2678 3565 5.990668 ACATAGAAAACCATGTACTCCCTC 58.009 41.667 0.00 0.00 33.66 4.30
2679 3566 5.104485 ACATAGAAAACCATGTACTCCCTCC 60.104 44.000 0.00 0.00 33.66 4.30
2680 3567 2.236395 AGAAAACCATGTACTCCCTCCG 59.764 50.000 0.00 0.00 0.00 4.63
2681 3568 1.652947 AAACCATGTACTCCCTCCGT 58.347 50.000 0.00 0.00 0.00 4.69
2682 3569 1.192428 AACCATGTACTCCCTCCGTC 58.808 55.000 0.00 0.00 0.00 4.79
2683 3570 0.686769 ACCATGTACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
2684 3571 1.400530 CCATGTACTCCCTCCGTCCC 61.401 65.000 0.00 0.00 0.00 4.46
2685 3572 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2686 3573 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2687 3574 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2688 3575 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2689 3576 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2690 3577 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2691 3578 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2692 3579 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2693 3580 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2694 3581 3.583086 CTCCCTCCGTCCCATAATGTAAT 59.417 47.826 0.00 0.00 0.00 1.89
2695 3582 4.754311 TCCCTCCGTCCCATAATGTAATA 58.246 43.478 0.00 0.00 0.00 0.98
2696 3583 4.529377 TCCCTCCGTCCCATAATGTAATAC 59.471 45.833 0.00 0.00 0.00 1.89
2697 3584 4.491676 CCTCCGTCCCATAATGTAATACG 58.508 47.826 0.00 0.00 0.00 3.06
2698 3585 4.021719 CCTCCGTCCCATAATGTAATACGT 60.022 45.833 0.00 0.00 0.00 3.57
2699 3586 5.510179 CCTCCGTCCCATAATGTAATACGTT 60.510 44.000 0.00 3.19 0.00 3.99
2700 3587 5.916318 TCCGTCCCATAATGTAATACGTTT 58.084 37.500 2.96 0.00 0.00 3.60
2701 3588 6.347696 TCCGTCCCATAATGTAATACGTTTT 58.652 36.000 2.96 0.00 0.00 2.43
2702 3589 6.479660 TCCGTCCCATAATGTAATACGTTTTC 59.520 38.462 2.96 0.00 0.00 2.29
2703 3590 6.480981 CCGTCCCATAATGTAATACGTTTTCT 59.519 38.462 2.96 0.00 0.00 2.52
2704 3591 7.342194 CGTCCCATAATGTAATACGTTTTCTG 58.658 38.462 2.96 0.49 0.00 3.02
2705 3592 7.223193 CGTCCCATAATGTAATACGTTTTCTGA 59.777 37.037 2.96 0.00 0.00 3.27
2706 3593 8.333186 GTCCCATAATGTAATACGTTTTCTGAC 58.667 37.037 2.96 3.43 0.00 3.51
2707 3594 8.041919 TCCCATAATGTAATACGTTTTCTGACA 58.958 33.333 2.96 0.00 0.00 3.58
2708 3595 8.120465 CCCATAATGTAATACGTTTTCTGACAC 58.880 37.037 2.96 0.00 0.00 3.67
2709 3596 8.879759 CCATAATGTAATACGTTTTCTGACACT 58.120 33.333 2.96 0.00 0.00 3.55
2712 3599 8.821147 AATGTAATACGTTTTCTGACACTACA 57.179 30.769 0.00 0.00 0.00 2.74
2713 3600 7.627585 TGTAATACGTTTTCTGACACTACAC 57.372 36.000 0.00 0.00 0.00 2.90
2714 3601 7.428020 TGTAATACGTTTTCTGACACTACACT 58.572 34.615 0.00 0.00 0.00 3.55
2715 3602 8.567104 TGTAATACGTTTTCTGACACTACACTA 58.433 33.333 0.00 0.00 0.00 2.74
2716 3603 9.398170 GTAATACGTTTTCTGACACTACACTAA 57.602 33.333 0.00 0.00 0.00 2.24
2718 3605 6.764877 ACGTTTTCTGACACTACACTAATG 57.235 37.500 0.00 0.00 0.00 1.90
2719 3606 6.278363 ACGTTTTCTGACACTACACTAATGT 58.722 36.000 0.00 0.00 43.30 2.71
2720 3607 7.428020 ACGTTTTCTGACACTACACTAATGTA 58.572 34.615 0.00 0.00 40.48 2.29
2721 3608 7.922278 ACGTTTTCTGACACTACACTAATGTAA 59.078 33.333 0.00 0.00 40.84 2.41
2722 3609 8.757789 CGTTTTCTGACACTACACTAATGTAAA 58.242 33.333 0.00 0.00 40.84 2.01
2744 3631 5.813080 AAAAGCGTCTTACATTATGGGAC 57.187 39.130 0.00 1.75 0.00 4.46
2750 3637 4.377897 GTCTTACATTATGGGACGAAGGG 58.622 47.826 0.00 0.00 0.00 3.95
2751 3638 4.100498 GTCTTACATTATGGGACGAAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
2752 3639 4.344102 TCTTACATTATGGGACGAAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
2753 3640 2.478292 ACATTATGGGACGAAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2754 3641 3.649843 ACATTATGGGACGAAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2755 3642 3.641906 ACATTATGGGACGAAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
2756 3643 3.393426 TTATGGGACGAAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
2757 3644 2.249309 ATGGGACGAAGGGAGTAGTT 57.751 50.000 0.00 0.00 0.00 2.24
2758 3645 2.019807 TGGGACGAAGGGAGTAGTTT 57.980 50.000 0.00 0.00 0.00 2.66
2759 3646 2.332117 TGGGACGAAGGGAGTAGTTTT 58.668 47.619 0.00 0.00 0.00 2.43
2760 3647 2.707257 TGGGACGAAGGGAGTAGTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
2761 3648 3.903090 TGGGACGAAGGGAGTAGTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
2762 3649 4.533311 TGGGACGAAGGGAGTAGTTTTTAT 59.467 41.667 0.00 0.00 0.00 1.40
2907 3797 6.595716 CACTGTAGGCAGCTAAAAGTTTATCT 59.404 38.462 0.00 0.00 46.30 1.98
2938 3828 1.529226 CTGGTTGGTTATTGCGTCCA 58.471 50.000 0.00 0.00 0.00 4.02
2998 3926 1.202290 CCCCAATCGAATTTTGAGCCG 60.202 52.381 0.00 0.00 0.00 5.52
3469 4865 4.574674 AAGGTGATGGCTCAACATTCTA 57.425 40.909 5.10 0.00 41.89 2.10
3639 5035 5.633601 CGCTGTCAGTTTCTACAATCACTTA 59.366 40.000 0.93 0.00 0.00 2.24
3656 5052 9.912634 CAATCACTTATGAAATGTTTTAGTGGT 57.087 29.630 0.00 0.00 38.69 4.16
3759 5155 3.795623 TCGGGAGCATACACTAACTTC 57.204 47.619 0.00 0.00 0.00 3.01
3793 5196 6.486253 TTTCCGAAAGAAATCTCATGTCAG 57.514 37.500 0.00 0.00 39.60 3.51
4127 5967 6.650807 TCTTGTAGCCTGTGAGAAAAATACAG 59.349 38.462 0.00 0.00 41.04 2.74
4137 5977 7.648142 TGTGAGAAAAATACAGTTAAAGCAGG 58.352 34.615 0.00 0.00 0.00 4.85
4333 6175 6.956202 TGTCCAGATAGCCTTAGTTACTAC 57.044 41.667 0.00 0.00 0.00 2.73
4385 6227 0.123266 TCCTCCCCAGAATTCCCCTT 59.877 55.000 0.65 0.00 0.00 3.95
4392 6234 4.296313 TCCCCAGAATTCCCCTTGAAAATA 59.704 41.667 0.65 0.00 36.33 1.40
4510 6352 3.406512 AGGTAGCATTACTCTGACCCT 57.593 47.619 0.00 0.00 0.00 4.34
4511 6353 3.034635 AGGTAGCATTACTCTGACCCTG 58.965 50.000 0.00 0.00 0.00 4.45
4605 6447 3.316501 AGGAATATCTGCCAGAGCTTCT 58.683 45.455 14.90 0.00 40.80 2.85
5087 6930 7.123247 CCTTGGCTTCATATAATTTAGGATGGG 59.877 40.741 0.00 0.00 0.00 4.00
5290 7133 5.640357 ACATATTTGCTCTGCATTTTGTTGG 59.360 36.000 0.00 0.00 38.76 3.77
5638 7488 2.375174 ACCAAGGCCACTCAAGTAATGA 59.625 45.455 5.01 0.00 36.38 2.57
5815 7665 7.616313 ACAATTTTCAGTTTTTGGGTAAGTCA 58.384 30.769 0.00 0.00 0.00 3.41
5851 7701 9.830186 ATTACACTCCCATGAATAGATAGTACT 57.170 33.333 0.00 0.00 0.00 2.73
5852 7702 7.768807 ACACTCCCATGAATAGATAGTACTC 57.231 40.000 0.00 0.00 0.00 2.59
5853 7703 6.722129 ACACTCCCATGAATAGATAGTACTCC 59.278 42.308 0.00 0.00 0.00 3.85
5854 7704 6.153680 CACTCCCATGAATAGATAGTACTCCC 59.846 46.154 0.00 0.00 0.00 4.30
5855 7705 6.047359 ACTCCCATGAATAGATAGTACTCCCT 59.953 42.308 0.00 0.00 0.00 4.20
5856 7706 6.494952 TCCCATGAATAGATAGTACTCCCTC 58.505 44.000 0.00 0.00 0.00 4.30
5857 7707 5.659079 CCCATGAATAGATAGTACTCCCTCC 59.341 48.000 0.00 0.00 0.00 4.30
5858 7708 6.256819 CCATGAATAGATAGTACTCCCTCCA 58.743 44.000 0.00 0.00 0.00 3.86
5859 7709 6.900186 CCATGAATAGATAGTACTCCCTCCAT 59.100 42.308 0.00 0.87 0.00 3.41
5860 7710 7.401493 CCATGAATAGATAGTACTCCCTCCATT 59.599 40.741 0.00 0.00 0.00 3.16
5861 7711 8.474025 CATGAATAGATAGTACTCCCTCCATTC 58.526 40.741 0.00 6.47 0.00 2.67
5862 7712 6.954684 TGAATAGATAGTACTCCCTCCATTCC 59.045 42.308 0.00 0.00 0.00 3.01
5863 7713 6.744802 ATAGATAGTACTCCCTCCATTCCT 57.255 41.667 0.00 0.00 0.00 3.36
5864 7714 7.848821 ATAGATAGTACTCCCTCCATTCCTA 57.151 40.000 0.00 0.00 0.00 2.94
5865 7715 6.547396 AGATAGTACTCCCTCCATTCCTAA 57.453 41.667 0.00 0.00 0.00 2.69
5866 7716 6.935036 AGATAGTACTCCCTCCATTCCTAAA 58.065 40.000 0.00 0.00 0.00 1.85
5867 7717 7.549141 AGATAGTACTCCCTCCATTCCTAAAT 58.451 38.462 0.00 0.00 0.00 1.40
5868 7718 8.689054 AGATAGTACTCCCTCCATTCCTAAATA 58.311 37.037 0.00 0.00 0.00 1.40
5869 7719 9.495382 GATAGTACTCCCTCCATTCCTAAATAT 57.505 37.037 0.00 0.00 0.00 1.28
5870 7720 9.860393 ATAGTACTCCCTCCATTCCTAAATATT 57.140 33.333 0.00 0.00 0.00 1.28
5871 7721 8.582891 AGTACTCCCTCCATTCCTAAATATTT 57.417 34.615 5.89 5.89 0.00 1.40
5872 7722 8.440771 AGTACTCCCTCCATTCCTAAATATTTG 58.559 37.037 11.05 1.40 0.00 2.32
5873 7723 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
5874 7724 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
5875 7725 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
5876 7726 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
5877 7727 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
5878 7728 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
5879 7729 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
5895 7745 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5896 7746 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5897 7747 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5898 7748 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5899 7749 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5900 7750 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5901 7751 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5902 7752 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5903 7753 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5905 7755 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5906 7756 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5907 7757 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5908 7758 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5909 7759 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5910 7760 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
5911 7761 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
5912 7762 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
5928 7778 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
5929 7779 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
5964 7814 8.747538 TGTCTATATACTATACATCCGCATGT 57.252 34.615 0.00 0.00 45.73 3.21
5965 7815 8.621286 TGTCTATATACTATACATCCGCATGTG 58.379 37.037 1.14 0.00 43.54 3.21
5966 7816 8.076781 GTCTATATACTATACATCCGCATGTGG 58.923 40.741 19.75 19.75 43.54 4.17
5967 7817 6.791867 ATATACTATACATCCGCATGTGGT 57.208 37.500 24.28 8.62 43.54 4.16
5968 7818 7.891498 ATATACTATACATCCGCATGTGGTA 57.109 36.000 24.28 10.63 43.54 3.25
5969 7819 4.521130 ACTATACATCCGCATGTGGTAG 57.479 45.455 24.28 18.98 43.54 3.18
5970 7820 3.895656 ACTATACATCCGCATGTGGTAGT 59.104 43.478 24.28 23.12 43.54 2.73
5971 7821 2.882927 TACATCCGCATGTGGTAGTC 57.117 50.000 24.28 0.00 43.54 2.59
5972 7822 0.178068 ACATCCGCATGTGGTAGTCC 59.822 55.000 24.28 0.00 42.05 3.85
5973 7823 0.177836 CATCCGCATGTGGTAGTCCA 59.822 55.000 24.28 4.84 42.05 4.02
5974 7824 1.131638 ATCCGCATGTGGTAGTCCAT 58.868 50.000 24.28 7.12 46.20 3.41
5975 7825 0.908910 TCCGCATGTGGTAGTCCATT 59.091 50.000 24.28 0.00 46.20 3.16
5976 7826 1.280710 TCCGCATGTGGTAGTCCATTT 59.719 47.619 24.28 0.00 46.20 2.32
5977 7827 1.401552 CCGCATGTGGTAGTCCATTTG 59.598 52.381 17.59 0.00 46.20 2.32
5978 7828 2.355197 CGCATGTGGTAGTCCATTTGA 58.645 47.619 0.00 0.00 46.20 2.69
5979 7829 2.746904 CGCATGTGGTAGTCCATTTGAA 59.253 45.455 0.00 0.00 46.20 2.69
5980 7830 3.190327 CGCATGTGGTAGTCCATTTGAAA 59.810 43.478 0.00 0.00 46.20 2.69
5981 7831 4.142403 CGCATGTGGTAGTCCATTTGAAAT 60.142 41.667 0.00 0.00 46.20 2.17
5982 7832 5.343249 GCATGTGGTAGTCCATTTGAAATC 58.657 41.667 0.00 0.00 46.20 2.17
5983 7833 5.126061 GCATGTGGTAGTCCATTTGAAATCT 59.874 40.000 0.00 0.00 46.20 2.40
5984 7834 6.678900 GCATGTGGTAGTCCATTTGAAATCTC 60.679 42.308 0.00 0.00 46.20 2.75
5985 7835 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5986 7836 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
5987 7837 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
5988 7838 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
5989 7839 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
5990 7840 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
5994 7844 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
5995 7845 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
6005 7855 9.674068 AATCTCTAAAAAGACAAATACTCCCTC 57.326 33.333 0.00 0.00 0.00 4.30
6006 7856 7.621796 TCTCTAAAAAGACAAATACTCCCTCC 58.378 38.462 0.00 0.00 0.00 4.30
6007 7857 7.236847 TCTCTAAAAAGACAAATACTCCCTCCA 59.763 37.037 0.00 0.00 0.00 3.86
6008 7858 7.928873 TCTAAAAAGACAAATACTCCCTCCAT 58.071 34.615 0.00 0.00 0.00 3.41
6009 7859 8.047310 TCTAAAAAGACAAATACTCCCTCCATC 58.953 37.037 0.00 0.00 0.00 3.51
6010 7860 6.394345 AAAAGACAAATACTCCCTCCATCT 57.606 37.500 0.00 0.00 0.00 2.90
6011 7861 5.365021 AAGACAAATACTCCCTCCATCTG 57.635 43.478 0.00 0.00 0.00 2.90
6012 7862 4.366267 AGACAAATACTCCCTCCATCTGT 58.634 43.478 0.00 0.00 0.00 3.41
6013 7863 5.529289 AGACAAATACTCCCTCCATCTGTA 58.471 41.667 0.00 0.00 0.00 2.74
6014 7864 6.146760 AGACAAATACTCCCTCCATCTGTAT 58.853 40.000 0.00 0.00 0.00 2.29
6015 7865 6.042552 AGACAAATACTCCCTCCATCTGTATG 59.957 42.308 0.00 0.00 0.00 2.39
6024 7874 0.681733 CCATCTGTATGGGACGGAGG 59.318 60.000 0.00 0.00 46.80 4.30
6025 7875 0.681733 CATCTGTATGGGACGGAGGG 59.318 60.000 0.00 0.00 46.80 4.30
6026 7876 0.561184 ATCTGTATGGGACGGAGGGA 59.439 55.000 0.00 0.00 46.80 4.20
6027 7877 0.106167 TCTGTATGGGACGGAGGGAG 60.106 60.000 0.00 0.00 38.61 4.30
6028 7878 0.397254 CTGTATGGGACGGAGGGAGT 60.397 60.000 0.00 0.00 36.40 3.85
6029 7879 0.928505 TGTATGGGACGGAGGGAGTA 59.071 55.000 0.00 0.00 0.00 2.59
6030 7880 1.502039 TGTATGGGACGGAGGGAGTAT 59.498 52.381 0.00 0.00 0.00 2.12
6031 7881 2.090943 TGTATGGGACGGAGGGAGTATT 60.091 50.000 0.00 0.00 0.00 1.89
6032 7882 2.191981 ATGGGACGGAGGGAGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
6033 7883 2.852714 TGGGACGGAGGGAGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
6034 7884 2.674420 TGGGACGGAGGGAGTATTTAG 58.326 52.381 0.00 0.00 0.00 1.85
6035 7885 1.969208 GGGACGGAGGGAGTATTTAGG 59.031 57.143 0.00 0.00 0.00 2.69
6036 7886 2.425392 GGGACGGAGGGAGTATTTAGGA 60.425 54.545 0.00 0.00 0.00 2.94
6037 7887 3.303049 GGACGGAGGGAGTATTTAGGAA 58.697 50.000 0.00 0.00 0.00 3.36
6038 7888 3.069300 GGACGGAGGGAGTATTTAGGAAC 59.931 52.174 0.00 0.00 0.00 3.62
6039 7889 2.692041 ACGGAGGGAGTATTTAGGAACG 59.308 50.000 0.00 0.00 0.00 3.95
6040 7890 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
6041 7891 3.303049 GGAGGGAGTATTTAGGAACGGA 58.697 50.000 0.00 0.00 0.00 4.69
6042 7892 3.321396 GGAGGGAGTATTTAGGAACGGAG 59.679 52.174 0.00 0.00 0.00 4.63
6043 7893 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
6044 7894 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
6045 7895 3.303049 GGAGTATTTAGGAACGGAGGGA 58.697 50.000 0.00 0.00 0.00 4.20
6046 7896 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
6047 7897 3.959449 GAGTATTTAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
6048 7898 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
6204 8054 2.550180 GGCTGGAGATAAAATTCGCTCC 59.450 50.000 0.00 0.00 45.59 4.70
6223 8073 1.825622 GCCAAGCTGATACAGGGCC 60.826 63.158 0.00 0.00 32.69 5.80
6393 8243 5.064707 CAGGAGACAACCATTTTGTATACCG 59.935 44.000 0.00 0.00 31.96 4.02
6411 8261 7.919091 TGTATACCGAGATCATGTAAAGTTGAC 59.081 37.037 0.00 0.00 0.00 3.18
6420 8270 6.618287 TCATGTAAAGTTGACCAAAGACAG 57.382 37.500 0.00 0.00 0.00 3.51
6421 8271 4.893424 TGTAAAGTTGACCAAAGACAGC 57.107 40.909 0.00 0.00 0.00 4.40
6422 8272 4.523083 TGTAAAGTTGACCAAAGACAGCT 58.477 39.130 0.00 0.00 31.18 4.24
6423 8273 4.947388 TGTAAAGTTGACCAAAGACAGCTT 59.053 37.500 0.00 0.00 39.92 3.74
6424 8274 6.116806 TGTAAAGTTGACCAAAGACAGCTTA 58.883 36.000 0.00 0.00 38.00 3.09
6425 8275 6.770785 TGTAAAGTTGACCAAAGACAGCTTAT 59.229 34.615 0.00 0.00 38.00 1.73
6426 8276 5.948992 AAGTTGACCAAAGACAGCTTATC 57.051 39.130 0.00 0.00 37.42 1.75
6430 8280 6.491403 AGTTGACCAAAGACAGCTTATCAAAT 59.509 34.615 0.00 0.00 34.82 2.32
6680 8568 4.647564 ACATCTTGATGGTCTTGTCCTT 57.352 40.909 14.18 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
304 1105 9.454859 AACAAATTTGGAAAACTGGAACATTTA 57.545 25.926 21.74 0.00 38.20 1.40
349 1150 3.857052 TGATACTTTTCCGAAGCACGAT 58.143 40.909 4.96 0.00 45.77 3.73
939 1797 3.779444 GAAGGAAAGGAATGGAAGGGTT 58.221 45.455 0.00 0.00 0.00 4.11
962 1820 0.679960 GGAGGGATTTCGGGTTGGTG 60.680 60.000 0.00 0.00 0.00 4.17
964 1822 0.679960 GTGGAGGGATTTCGGGTTGG 60.680 60.000 0.00 0.00 0.00 3.77
980 1838 3.222855 TGGTTGCGGCCTTTGTGG 61.223 61.111 0.00 0.00 39.35 4.17
983 1841 2.573083 ATGGTGGTTGCGGCCTTTG 61.573 57.895 0.00 0.00 0.00 2.77
991 1849 2.491152 CGATGCCATGGTGGTTGC 59.509 61.111 14.67 0.00 40.46 4.17
1005 1863 2.971428 CTACCGTGGCCATTCGCGAT 62.971 60.000 9.72 0.00 42.50 4.58
1234 2093 3.472809 GGAGATAAGGCCTCCGGG 58.527 66.667 5.23 0.00 40.58 5.73
1253 2112 2.038952 CTCCTGAACCAGACCATTCACA 59.961 50.000 0.00 0.00 32.44 3.58
1277 2136 2.874849 CTCTTGAGAAGCTCGAGAACC 58.125 52.381 18.75 3.31 46.55 3.62
1301 2160 2.988549 GATAGCAATCGCCGCGACG 61.989 63.158 19.45 9.05 39.18 5.12
1494 2353 1.341531 CCAGAACCTGAGAGACAACGT 59.658 52.381 0.00 0.00 32.44 3.99
1520 2379 5.699458 GTCCTCCAACGAGTTCTGAAAAATA 59.301 40.000 0.00 0.00 33.93 1.40
1610 2469 1.283029 AGTCAATGTACCTGCATGGCT 59.717 47.619 0.00 0.00 40.22 4.75
1623 2482 2.092914 GGTCAGGTTAGGGGAGTCAATG 60.093 54.545 0.00 0.00 0.00 2.82
1894 2753 8.821686 TTTGAAATTTGAGGCTCCAATAGATA 57.178 30.769 13.58 0.17 0.00 1.98
1895 2754 7.722949 TTTGAAATTTGAGGCTCCAATAGAT 57.277 32.000 13.58 4.49 0.00 1.98
1981 2841 7.499232 ACAGGTATGTAGATAAAATCTTGGTGC 59.501 37.037 0.00 0.00 40.76 5.01
2045 2905 6.463049 CCCTCTTCAGATATCATACAACGGTT 60.463 42.308 5.32 0.00 0.00 4.44
2047 2907 5.011125 ACCCTCTTCAGATATCATACAACGG 59.989 44.000 5.32 0.00 0.00 4.44
2080 2940 3.788694 CGATTCGCTTTTGTTTCACAACA 59.211 39.130 0.00 0.00 37.90 3.33
2101 2961 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
2133 2993 2.236395 CTCCCTCCGTTCCACAATAAGT 59.764 50.000 0.00 0.00 0.00 2.24
2134 2994 2.236395 ACTCCCTCCGTTCCACAATAAG 59.764 50.000 0.00 0.00 0.00 1.73
2140 3027 4.684484 ATTAATACTCCCTCCGTTCCAC 57.316 45.455 0.00 0.00 0.00 4.02
2672 3559 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2674 3561 4.619863 CGTATTACATTATGGGACGGAGGG 60.620 50.000 0.00 0.00 0.00 4.30
2676 3563 5.130292 ACGTATTACATTATGGGACGGAG 57.870 43.478 12.39 0.00 33.32 4.63
2677 3564 5.534207 AACGTATTACATTATGGGACGGA 57.466 39.130 12.39 0.00 33.32 4.69
2678 3565 6.480981 AGAAAACGTATTACATTATGGGACGG 59.519 38.462 12.39 0.00 33.32 4.79
2679 3566 7.223193 TCAGAAAACGTATTACATTATGGGACG 59.777 37.037 0.00 3.40 35.10 4.79
2680 3567 8.333186 GTCAGAAAACGTATTACATTATGGGAC 58.667 37.037 0.00 0.00 0.00 4.46
2681 3568 8.041919 TGTCAGAAAACGTATTACATTATGGGA 58.958 33.333 0.00 0.00 0.00 4.37
2682 3569 8.120465 GTGTCAGAAAACGTATTACATTATGGG 58.880 37.037 0.00 0.00 0.00 4.00
2683 3570 8.879759 AGTGTCAGAAAACGTATTACATTATGG 58.120 33.333 0.00 0.00 0.00 2.74
2686 3573 9.911138 TGTAGTGTCAGAAAACGTATTACATTA 57.089 29.630 0.00 0.00 0.00 1.90
2687 3574 8.706035 GTGTAGTGTCAGAAAACGTATTACATT 58.294 33.333 0.00 0.00 0.00 2.71
2688 3575 8.086522 AGTGTAGTGTCAGAAAACGTATTACAT 58.913 33.333 0.00 0.00 0.00 2.29
2689 3576 7.428020 AGTGTAGTGTCAGAAAACGTATTACA 58.572 34.615 0.00 0.00 0.00 2.41
2690 3577 7.864307 AGTGTAGTGTCAGAAAACGTATTAC 57.136 36.000 0.00 0.00 0.00 1.89
2692 3579 8.922676 CATTAGTGTAGTGTCAGAAAACGTATT 58.077 33.333 0.00 0.00 0.00 1.89
2693 3580 8.086522 ACATTAGTGTAGTGTCAGAAAACGTAT 58.913 33.333 0.00 0.00 36.63 3.06
2694 3581 7.428020 ACATTAGTGTAGTGTCAGAAAACGTA 58.572 34.615 0.00 0.00 36.63 3.57
2695 3582 6.278363 ACATTAGTGTAGTGTCAGAAAACGT 58.722 36.000 0.00 0.00 36.63 3.99
2696 3583 6.764877 ACATTAGTGTAGTGTCAGAAAACG 57.235 37.500 0.00 0.00 36.63 3.60
2721 3608 5.163794 CGTCCCATAATGTAAGACGCTTTTT 60.164 40.000 0.00 0.00 43.07 1.94
2722 3609 4.331717 CGTCCCATAATGTAAGACGCTTTT 59.668 41.667 0.00 0.00 43.07 2.27
2723 3610 3.869246 CGTCCCATAATGTAAGACGCTTT 59.131 43.478 0.00 0.00 43.07 3.51
2724 3611 3.454375 CGTCCCATAATGTAAGACGCTT 58.546 45.455 0.00 0.00 43.07 4.68
2725 3612 3.093717 CGTCCCATAATGTAAGACGCT 57.906 47.619 0.00 0.00 43.07 5.07
2728 3615 4.100498 TCCCTTCGTCCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
2729 3616 4.291792 TCCCTTCGTCCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
2730 3617 4.101119 ACTCCCTTCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
2731 3618 4.035112 ACTCCCTTCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
2732 3619 3.649843 ACTCCCTTCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2733 3620 2.478292 ACTCCCTTCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2734 3621 3.641906 ACTACTCCCTTCGTCCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
2735 3622 3.924922 ACTACTCCCTTCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
2736 3623 3.393426 ACTACTCCCTTCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2737 3624 3.393426 AACTACTCCCTTCGTCCCATA 57.607 47.619 0.00 0.00 0.00 2.74
2738 3625 2.249309 AACTACTCCCTTCGTCCCAT 57.751 50.000 0.00 0.00 0.00 4.00
2739 3626 2.019807 AAACTACTCCCTTCGTCCCA 57.980 50.000 0.00 0.00 0.00 4.37
2740 3627 3.413846 AAAAACTACTCCCTTCGTCCC 57.586 47.619 0.00 0.00 0.00 4.46
2741 3628 7.444629 AAAATAAAAACTACTCCCTTCGTCC 57.555 36.000 0.00 0.00 0.00 4.79
2742 3629 7.095481 ACGAAAATAAAAACTACTCCCTTCGTC 60.095 37.037 0.00 0.00 40.58 4.20
2743 3630 6.707608 ACGAAAATAAAAACTACTCCCTTCGT 59.292 34.615 0.00 0.00 39.98 3.85
2744 3631 7.125536 ACGAAAATAAAAACTACTCCCTTCG 57.874 36.000 0.00 0.00 38.25 3.79
2746 3633 9.006839 CCTAACGAAAATAAAAACTACTCCCTT 57.993 33.333 0.00 0.00 0.00 3.95
2747 3634 7.609146 CCCTAACGAAAATAAAAACTACTCCCT 59.391 37.037 0.00 0.00 0.00 4.20
2748 3635 7.391554 ACCCTAACGAAAATAAAAACTACTCCC 59.608 37.037 0.00 0.00 0.00 4.30
2749 3636 8.327941 ACCCTAACGAAAATAAAAACTACTCC 57.672 34.615 0.00 0.00 0.00 3.85
2754 3641 9.565090 AGTCTTACCCTAACGAAAATAAAAACT 57.435 29.630 0.00 0.00 0.00 2.66
2761 3648 9.901172 ATGATTAAGTCTTACCCTAACGAAAAT 57.099 29.630 0.00 0.00 0.00 1.82
2762 3649 9.158233 CATGATTAAGTCTTACCCTAACGAAAA 57.842 33.333 0.00 0.00 0.00 2.29
2907 3797 1.758280 ACCAACCAGCGTCCGAATATA 59.242 47.619 0.00 0.00 0.00 0.86
2959 3849 6.134535 TGGGGCTTACATATTATTCGGAAT 57.865 37.500 8.49 8.49 0.00 3.01
2960 3850 5.570205 TGGGGCTTACATATTATTCGGAA 57.430 39.130 0.00 0.00 0.00 4.30
2966 3856 8.650143 AAATTCGATTGGGGCTTACATATTAT 57.350 30.769 0.00 0.00 0.00 1.28
3151 4543 3.524095 ATTTGGGTGATGTTCTGACCA 57.476 42.857 0.00 0.00 0.00 4.02
3656 5052 3.048600 AGGATGCCTGGCTATCAAGTAA 58.951 45.455 21.03 0.00 29.57 2.24
4087 5491 5.470098 GGCTACAAGAGTGAAACAGAATTCA 59.530 40.000 8.44 0.00 41.43 2.57
4088 5492 5.703130 AGGCTACAAGAGTGAAACAGAATTC 59.297 40.000 0.00 0.00 41.43 2.17
4089 5493 5.471456 CAGGCTACAAGAGTGAAACAGAATT 59.529 40.000 0.00 0.00 41.43 2.17
4090 5494 4.999950 CAGGCTACAAGAGTGAAACAGAAT 59.000 41.667 0.00 0.00 41.43 2.40
4091 5495 4.141711 ACAGGCTACAAGAGTGAAACAGAA 60.142 41.667 0.00 0.00 41.43 3.02
4092 5496 3.388024 ACAGGCTACAAGAGTGAAACAGA 59.612 43.478 0.00 0.00 41.43 3.41
4093 5497 3.496130 CACAGGCTACAAGAGTGAAACAG 59.504 47.826 0.00 0.00 41.43 3.16
4094 5498 3.133901 TCACAGGCTACAAGAGTGAAACA 59.866 43.478 1.07 0.00 41.43 2.83
4095 5499 3.728845 TCACAGGCTACAAGAGTGAAAC 58.271 45.455 1.07 0.00 36.39 2.78
4169 6009 9.322773 TGCTGATTCTTAGTCTAGATGAAAATG 57.677 33.333 0.00 0.00 0.00 2.32
4310 6152 5.832060 GGTAGTAACTAAGGCTATCTGGACA 59.168 44.000 0.00 0.00 0.00 4.02
4385 6227 8.465999 ACAACTGACACACAAATCTTATTTTCA 58.534 29.630 0.00 0.00 0.00 2.69
4392 6234 4.462483 ACCAACAACTGACACACAAATCTT 59.538 37.500 0.00 0.00 0.00 2.40
4510 6352 3.776969 ACTAGGCAGGAAATGATGAGACA 59.223 43.478 0.00 0.00 0.00 3.41
4511 6353 4.414337 ACTAGGCAGGAAATGATGAGAC 57.586 45.455 0.00 0.00 0.00 3.36
4574 6416 9.829507 CTCTGGCAGATATTCCTTATATAAAGG 57.170 37.037 19.11 0.00 38.78 3.11
4605 6447 2.809446 GCGTAGTGCATATGTCAGACA 58.191 47.619 5.50 5.50 45.45 3.41
4656 6498 2.649531 ACATTTGTGAACGGAGGGAA 57.350 45.000 0.00 0.00 0.00 3.97
4704 6546 5.147330 TCACTCATTTCAGTCCGTATGTT 57.853 39.130 0.00 0.00 0.00 2.71
5087 6930 1.923356 TTGGAAGGACTGGCAATTCC 58.077 50.000 9.23 9.23 41.34 3.01
5592 7442 5.653769 AGTGCCTGTGTTTGCATAGATATTT 59.346 36.000 0.00 0.00 40.07 1.40
5607 7457 1.675641 GGCCTTGGTAGTGCCTGTG 60.676 63.158 0.00 0.00 42.01 3.66
5638 7488 9.566432 GAGGAGATTGGACATTCATAACTATTT 57.434 33.333 0.00 0.00 0.00 1.40
5653 7503 2.968574 GCAGATGGTAGAGGAGATTGGA 59.031 50.000 0.00 0.00 0.00 3.53
5815 7665 7.356089 TCATGGGAGTGTAATATTAAGTCGT 57.644 36.000 0.00 0.00 0.00 4.34
5850 7700 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
5851 7701 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
5852 7702 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
5853 7703 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
5869 7719 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5870 7720 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5871 7721 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5872 7722 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5873 7723 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5874 7724 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5875 7725 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5876 7726 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5877 7727 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5878 7728 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5879 7729 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5880 7730 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5881 7731 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5882 7732 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5883 7733 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5884 7734 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5885 7735 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5886 7736 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
5887 7737 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
5888 7738 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
5889 7739 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
5890 7740 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
5891 7741 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
5892 7742 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
5893 7743 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
5894 7744 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
5895 7745 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
5896 7746 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
5897 7747 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
5898 7748 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
5899 7749 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
5900 7750 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
5901 7751 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
5902 7752 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
5903 7753 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
5904 7754 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
5905 7755 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
5938 7788 9.355916 ACATGCGGATGTATAGTATATAGACAT 57.644 33.333 21.92 0.00 41.27 3.06
5939 7789 8.621286 CACATGCGGATGTATAGTATATAGACA 58.379 37.037 22.75 0.00 41.12 3.41
5940 7790 8.076781 CCACATGCGGATGTATAGTATATAGAC 58.923 40.741 22.75 0.00 41.12 2.59
5941 7791 7.778382 ACCACATGCGGATGTATAGTATATAGA 59.222 37.037 22.75 0.00 41.12 1.98
5942 7792 7.941919 ACCACATGCGGATGTATAGTATATAG 58.058 38.462 22.75 6.01 41.12 1.31
5943 7793 7.891498 ACCACATGCGGATGTATAGTATATA 57.109 36.000 22.75 0.00 41.12 0.86
5944 7794 6.791867 ACCACATGCGGATGTATAGTATAT 57.208 37.500 22.75 0.00 41.12 0.86
5945 7795 6.888088 ACTACCACATGCGGATGTATAGTATA 59.112 38.462 29.18 14.60 41.12 1.47
5946 7796 5.715279 ACTACCACATGCGGATGTATAGTAT 59.285 40.000 29.18 15.75 41.12 2.12
5947 7797 5.074804 ACTACCACATGCGGATGTATAGTA 58.925 41.667 29.18 24.09 41.12 1.82
5948 7798 3.895656 ACTACCACATGCGGATGTATAGT 59.104 43.478 26.85 26.85 41.12 2.12
5949 7799 4.486090 GACTACCACATGCGGATGTATAG 58.514 47.826 25.94 25.94 41.12 1.31
5950 7800 3.257375 GGACTACCACATGCGGATGTATA 59.743 47.826 22.75 15.93 41.12 1.47
5951 7801 2.037251 GGACTACCACATGCGGATGTAT 59.963 50.000 22.75 15.65 41.12 2.29
5952 7802 1.411246 GGACTACCACATGCGGATGTA 59.589 52.381 22.75 6.53 41.12 2.29
5953 7803 0.178068 GGACTACCACATGCGGATGT 59.822 55.000 17.64 17.64 44.08 3.06
5954 7804 0.177836 TGGACTACCACATGCGGATG 59.822 55.000 16.07 16.07 41.77 3.51
5955 7805 2.602890 TGGACTACCACATGCGGAT 58.397 52.632 6.80 0.00 41.77 4.18
5956 7806 4.121906 TGGACTACCACATGCGGA 57.878 55.556 6.80 0.00 41.77 5.54
5968 7818 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
5969 7819 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
5979 7829 9.674068 GAGGGAGTATTTGTCTTTTTAGAGATT 57.326 33.333 0.00 0.00 0.00 2.40
5980 7830 8.268605 GGAGGGAGTATTTGTCTTTTTAGAGAT 58.731 37.037 0.00 0.00 0.00 2.75
5981 7831 7.236847 TGGAGGGAGTATTTGTCTTTTTAGAGA 59.763 37.037 0.00 0.00 0.00 3.10
5982 7832 7.394816 TGGAGGGAGTATTTGTCTTTTTAGAG 58.605 38.462 0.00 0.00 0.00 2.43
5983 7833 7.324388 TGGAGGGAGTATTTGTCTTTTTAGA 57.676 36.000 0.00 0.00 0.00 2.10
5984 7834 8.049721 AGATGGAGGGAGTATTTGTCTTTTTAG 58.950 37.037 0.00 0.00 0.00 1.85
5985 7835 7.829211 CAGATGGAGGGAGTATTTGTCTTTTTA 59.171 37.037 0.00 0.00 0.00 1.52
5986 7836 6.660949 CAGATGGAGGGAGTATTTGTCTTTTT 59.339 38.462 0.00 0.00 0.00 1.94
5987 7837 6.183347 CAGATGGAGGGAGTATTTGTCTTTT 58.817 40.000 0.00 0.00 0.00 2.27
5988 7838 5.251700 ACAGATGGAGGGAGTATTTGTCTTT 59.748 40.000 0.00 0.00 0.00 2.52
5989 7839 4.785376 ACAGATGGAGGGAGTATTTGTCTT 59.215 41.667 0.00 0.00 0.00 3.01
5990 7840 4.366267 ACAGATGGAGGGAGTATTTGTCT 58.634 43.478 0.00 0.00 0.00 3.41
5991 7841 4.762289 ACAGATGGAGGGAGTATTTGTC 57.238 45.455 0.00 0.00 0.00 3.18
5992 7842 6.179906 CATACAGATGGAGGGAGTATTTGT 57.820 41.667 0.00 0.00 0.00 2.83
6006 7856 0.681733 CCCTCCGTCCCATACAGATG 59.318 60.000 0.00 0.00 0.00 2.90
6007 7857 0.561184 TCCCTCCGTCCCATACAGAT 59.439 55.000 0.00 0.00 0.00 2.90
6008 7858 0.106167 CTCCCTCCGTCCCATACAGA 60.106 60.000 0.00 0.00 0.00 3.41
6009 7859 0.397254 ACTCCCTCCGTCCCATACAG 60.397 60.000 0.00 0.00 0.00 2.74
6010 7860 0.928505 TACTCCCTCCGTCCCATACA 59.071 55.000 0.00 0.00 0.00 2.29
6011 7861 2.305858 ATACTCCCTCCGTCCCATAC 57.694 55.000 0.00 0.00 0.00 2.39
6012 7862 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
6013 7863 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
6014 7864 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
6015 7865 1.969208 CCTAAATACTCCCTCCGTCCC 59.031 57.143 0.00 0.00 0.00 4.46
6016 7866 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
6017 7867 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
6018 7868 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
6019 7869 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
6020 7870 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
6021 7871 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
6022 7872 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
6023 7873 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
6024 7874 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
6025 7875 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
6026 7876 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
6027 7877 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
6028 7878 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
6029 7879 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
6030 7880 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
6031 7881 3.782523 TCTAGTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
6032 7882 3.387962 TCTAGTACTCCCTCCGTTCCTA 58.612 50.000 0.00 0.00 0.00 2.94
6033 7883 2.203584 TCTAGTACTCCCTCCGTTCCT 58.796 52.381 0.00 0.00 0.00 3.36
6034 7884 2.725221 TCTAGTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
6035 7885 4.643784 TCATTTCTAGTACTCCCTCCGTTC 59.356 45.833 0.00 0.00 0.00 3.95
6036 7886 4.607239 TCATTTCTAGTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
6037 7887 4.246712 TCATTTCTAGTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
6038 7888 4.827835 TGATCATTTCTAGTACTCCCTCCG 59.172 45.833 0.00 0.00 0.00 4.63
6039 7889 6.071984 TCTGATCATTTCTAGTACTCCCTCC 58.928 44.000 0.00 0.00 0.00 4.30
6040 7890 7.775053 ATCTGATCATTTCTAGTACTCCCTC 57.225 40.000 0.00 0.00 0.00 4.30
6041 7891 9.836179 AATATCTGATCATTTCTAGTACTCCCT 57.164 33.333 0.00 0.00 0.00 4.20
6204 8054 2.182842 GCCCTGTATCAGCTTGGCG 61.183 63.158 0.00 0.00 29.70 5.69
6223 8073 2.388232 GCAGTACAAGGCGTTCCCG 61.388 63.158 0.00 0.00 39.21 5.14
6393 8243 7.173218 TGTCTTTGGTCAACTTTACATGATCTC 59.827 37.037 0.00 0.00 0.00 2.75
6445 8295 6.883756 TGCGATGATTCTGTCTCTCTCTATAT 59.116 38.462 0.00 0.00 0.00 0.86
6446 8296 6.148645 GTGCGATGATTCTGTCTCTCTCTATA 59.851 42.308 0.00 0.00 0.00 1.31
6447 8297 5.048782 GTGCGATGATTCTGTCTCTCTCTAT 60.049 44.000 0.00 0.00 0.00 1.98
6448 8298 4.274705 GTGCGATGATTCTGTCTCTCTCTA 59.725 45.833 0.00 0.00 0.00 2.43
6449 8299 3.066621 GTGCGATGATTCTGTCTCTCTCT 59.933 47.826 0.00 0.00 0.00 3.10
6450 8300 3.181492 TGTGCGATGATTCTGTCTCTCTC 60.181 47.826 0.00 0.00 0.00 3.20
6451 8301 2.757314 TGTGCGATGATTCTGTCTCTCT 59.243 45.455 0.00 0.00 0.00 3.10
6452 8302 3.156511 TGTGCGATGATTCTGTCTCTC 57.843 47.619 0.00 0.00 0.00 3.20
6486 8338 7.703298 ATTCGGATTGTGCAATGATAAATTG 57.297 32.000 1.77 0.00 0.00 2.32
6487 8339 8.849168 TCTATTCGGATTGTGCAATGATAAATT 58.151 29.630 1.77 0.00 0.00 1.82
6489 8341 7.800155 TCTATTCGGATTGTGCAATGATAAA 57.200 32.000 1.77 0.00 0.00 1.40
6492 8344 6.675026 CATTCTATTCGGATTGTGCAATGAT 58.325 36.000 1.77 0.00 0.00 2.45
6544 8432 2.046314 GCCGGCAGCAACTTCCTA 60.046 61.111 24.80 0.00 42.97 2.94
6999 8887 0.395686 CCATGTGCAGGATCTCCGAT 59.604 55.000 0.00 0.00 42.08 4.18
7188 9076 2.732619 GGCCTTCGTCCCCGATCTT 61.733 63.158 0.00 0.00 43.80 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.