Multiple sequence alignment - TraesCS2B01G229000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G229000 chr2B 100.000 5949 0 0 1 5949 223728683 223734631 0.000000e+00 10986.0
1 TraesCS2B01G229000 chr2B 91.414 198 11 1 142 333 787092211 787092408 3.530000e-67 267.0
2 TraesCS2B01G229000 chr2B 100.000 80 0 0 4027 4106 223732632 223732711 1.340000e-31 148.0
3 TraesCS2B01G229000 chr2B 100.000 80 0 0 3950 4029 223732709 223732788 1.340000e-31 148.0
4 TraesCS2B01G229000 chr2A 92.594 3713 133 56 377 4029 176075958 176079588 0.000000e+00 5203.0
5 TraesCS2B01G229000 chr2A 91.426 1936 68 31 4027 5898 176079509 176081410 0.000000e+00 2566.0
6 TraesCS2B01G229000 chr2D 93.875 3363 109 38 380 3689 175591132 175594450 0.000000e+00 4979.0
7 TraesCS2B01G229000 chr2D 95.598 1045 45 1 4027 5071 175594793 175595836 0.000000e+00 1674.0
8 TraesCS2B01G229000 chr2D 85.373 711 32 26 5252 5930 175605202 175605872 0.000000e+00 671.0
9 TraesCS2B01G229000 chr2D 95.614 342 15 0 3688 4029 175594531 175594872 3.130000e-152 549.0
10 TraesCS2B01G229000 chr2D 90.256 195 10 4 5065 5259 175604849 175605034 4.600000e-61 246.0
11 TraesCS2B01G229000 chr4B 92.929 198 8 1 142 333 530463728 530463531 3.510000e-72 283.0
12 TraesCS2B01G229000 chr4B 90.306 196 13 1 144 333 38369022 38369217 9.900000e-63 252.0
13 TraesCS2B01G229000 chr4B 96.528 144 4 1 1 143 13950798 13950941 2.770000e-58 237.0
14 TraesCS2B01G229000 chr1B 92.929 198 8 2 142 333 606586331 606586134 3.510000e-72 283.0
15 TraesCS2B01G229000 chr1B 97.902 143 3 0 1 143 554512653 554512795 1.280000e-61 248.0
16 TraesCS2B01G229000 chr3B 92.424 198 9 1 142 333 109364852 109364655 1.630000e-70 278.0
17 TraesCS2B01G229000 chr6A 91.919 198 10 1 142 333 578605249 578605052 7.600000e-69 272.0
18 TraesCS2B01G229000 chr7A 91.414 198 11 1 142 333 20403976 20403779 3.530000e-67 267.0
19 TraesCS2B01G229000 chr7A 91.414 198 11 1 142 333 20415434 20415237 3.530000e-67 267.0
20 TraesCS2B01G229000 chr5B 91.414 198 8 3 142 333 685319220 685319026 4.570000e-66 263.0
21 TraesCS2B01G229000 chr5B 96.503 143 5 0 1 143 141898593 141898451 2.770000e-58 237.0
22 TraesCS2B01G229000 chr7B 97.203 143 4 0 1 143 634764217 634764075 5.960000e-60 243.0
23 TraesCS2B01G229000 chr7B 95.918 147 6 0 1 147 606408091 606407945 7.710000e-59 239.0
24 TraesCS2B01G229000 chr6B 97.857 140 3 0 1 140 75917012 75917151 5.960000e-60 243.0
25 TraesCS2B01G229000 chr6B 95.333 150 6 1 1 149 678297976 678297827 2.770000e-58 237.0
26 TraesCS2B01G229000 chr5A 94.194 155 7 1 1 155 668993453 668993605 9.970000e-58 235.0
27 TraesCS2B01G229000 chr3A 93.631 157 8 2 1 155 468166009 468165853 3.580000e-57 233.0
28 TraesCS2B01G229000 chrUn 77.640 161 23 12 3279 3433 79968690 79968537 1.060000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G229000 chr2B 223728683 223734631 5948 False 3760.666667 10986 100.0000 1 5949 3 chr2B.!!$F2 5948
1 TraesCS2B01G229000 chr2A 176075958 176081410 5452 False 3884.500000 5203 92.0100 377 5898 2 chr2A.!!$F1 5521
2 TraesCS2B01G229000 chr2D 175591132 175595836 4704 False 2400.666667 4979 95.0290 380 5071 3 chr2D.!!$F1 4691
3 TraesCS2B01G229000 chr2D 175604849 175605872 1023 False 458.500000 671 87.8145 5065 5930 2 chr2D.!!$F2 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 421 0.109272 GGATCACGTCGCTGTTGAGA 60.109 55.000 0.00 0.0 0.00 3.27 F
630 653 1.135915 CTCAGCTCCTCGCAGTACATT 59.864 52.381 0.00 0.0 42.61 2.71 F
1403 1476 0.389757 GAGGCGACTAGGTTGATCCC 59.610 60.000 0.00 0.0 44.43 3.85 F
2974 3050 0.400213 ATTTCCAGCGGACCAGTTCA 59.600 50.000 0.00 0.0 0.00 3.18 F
3145 3229 0.972883 GGGAGACTCTGTGTGCTTCT 59.027 55.000 1.74 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1476 0.660005 CAAACACCATTGACCGCACG 60.660 55.0 0.00 0.0 31.84 5.34 R
2491 2567 0.737219 GCCATGTGAGACCAATCAGC 59.263 55.0 0.00 0.0 0.00 4.26 R
3397 3486 0.543410 TGAAACCTCCGGCCTCTACA 60.543 55.0 0.00 0.0 0.00 2.74 R
4036 4215 0.748450 AGCGGCGCTTACATAGGTAA 59.252 50.0 31.35 0.0 33.89 2.85 R
5093 5275 0.527113 TCGAGCGACACCCGAAAATA 59.473 50.0 0.00 0.0 41.76 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.520691 GGGTTCCCCTGACTAAAGTTT 57.479 47.619 0.00 0.00 41.34 2.66
26 27 3.840991 GGGTTCCCCTGACTAAAGTTTT 58.159 45.455 0.00 0.00 41.34 2.43
27 28 4.220724 GGGTTCCCCTGACTAAAGTTTTT 58.779 43.478 0.00 0.00 41.34 1.94
52 53 5.494632 GTCTCAAGACTAGTTCTAGCCTC 57.505 47.826 0.00 0.00 41.65 4.70
53 54 5.190677 GTCTCAAGACTAGTTCTAGCCTCT 58.809 45.833 0.00 1.52 41.65 3.69
54 55 5.650703 GTCTCAAGACTAGTTCTAGCCTCTT 59.349 44.000 0.00 6.78 41.65 2.85
55 56 6.152154 GTCTCAAGACTAGTTCTAGCCTCTTT 59.848 42.308 0.00 0.00 41.65 2.52
56 57 6.722129 TCTCAAGACTAGTTCTAGCCTCTTTT 59.278 38.462 0.00 0.00 32.51 2.27
57 58 7.233757 TCTCAAGACTAGTTCTAGCCTCTTTTT 59.766 37.037 0.00 0.00 32.51 1.94
58 59 8.418597 TCAAGACTAGTTCTAGCCTCTTTTTA 57.581 34.615 0.00 0.00 32.51 1.52
59 60 8.524487 TCAAGACTAGTTCTAGCCTCTTTTTAG 58.476 37.037 0.00 0.34 32.51 1.85
60 61 8.308207 CAAGACTAGTTCTAGCCTCTTTTTAGT 58.692 37.037 0.00 0.00 32.51 2.24
61 62 8.058667 AGACTAGTTCTAGCCTCTTTTTAGTC 57.941 38.462 0.00 0.00 36.42 2.59
62 63 7.670559 AGACTAGTTCTAGCCTCTTTTTAGTCA 59.329 37.037 0.00 0.00 37.83 3.41
63 64 7.832769 ACTAGTTCTAGCCTCTTTTTAGTCAG 58.167 38.462 6.75 0.00 0.00 3.51
64 65 6.043854 AGTTCTAGCCTCTTTTTAGTCAGG 57.956 41.667 0.00 0.00 0.00 3.86
65 66 5.046231 AGTTCTAGCCTCTTTTTAGTCAGGG 60.046 44.000 0.00 0.00 0.00 4.45
66 67 3.775316 TCTAGCCTCTTTTTAGTCAGGGG 59.225 47.826 0.00 0.00 33.13 4.79
67 68 2.349445 AGCCTCTTTTTAGTCAGGGGT 58.651 47.619 0.00 0.00 32.47 4.95
68 69 2.040412 AGCCTCTTTTTAGTCAGGGGTG 59.960 50.000 0.00 0.00 32.47 4.61
69 70 2.039879 GCCTCTTTTTAGTCAGGGGTGA 59.960 50.000 0.00 0.00 32.47 4.02
70 71 3.308473 GCCTCTTTTTAGTCAGGGGTGAT 60.308 47.826 0.00 0.00 32.47 3.06
71 72 4.811063 GCCTCTTTTTAGTCAGGGGTGATT 60.811 45.833 0.00 0.00 32.47 2.57
72 73 4.702131 CCTCTTTTTAGTCAGGGGTGATTG 59.298 45.833 0.00 0.00 0.00 2.67
73 74 4.662278 TCTTTTTAGTCAGGGGTGATTGG 58.338 43.478 0.00 0.00 0.00 3.16
74 75 4.352595 TCTTTTTAGTCAGGGGTGATTGGA 59.647 41.667 0.00 0.00 0.00 3.53
75 76 4.733077 TTTTAGTCAGGGGTGATTGGAA 57.267 40.909 0.00 0.00 0.00 3.53
76 77 3.713826 TTAGTCAGGGGTGATTGGAAC 57.286 47.619 0.00 0.00 0.00 3.62
77 78 1.747444 AGTCAGGGGTGATTGGAACT 58.253 50.000 0.00 0.00 0.00 3.01
78 79 2.065799 AGTCAGGGGTGATTGGAACTT 58.934 47.619 0.00 0.00 0.00 2.66
79 80 2.447047 AGTCAGGGGTGATTGGAACTTT 59.553 45.455 0.00 0.00 0.00 2.66
80 81 3.655777 AGTCAGGGGTGATTGGAACTTTA 59.344 43.478 0.00 0.00 0.00 1.85
81 82 4.010349 GTCAGGGGTGATTGGAACTTTAG 58.990 47.826 0.00 0.00 0.00 1.85
82 83 2.755103 CAGGGGTGATTGGAACTTTAGC 59.245 50.000 0.00 0.00 0.00 3.09
83 84 2.100197 GGGGTGATTGGAACTTTAGCC 58.900 52.381 0.00 0.00 0.00 3.93
84 85 2.291605 GGGGTGATTGGAACTTTAGCCT 60.292 50.000 0.00 0.00 0.00 4.58
85 86 3.017442 GGGTGATTGGAACTTTAGCCTC 58.983 50.000 0.00 0.00 0.00 4.70
86 87 3.308473 GGGTGATTGGAACTTTAGCCTCT 60.308 47.826 0.00 0.00 0.00 3.69
87 88 4.080526 GGGTGATTGGAACTTTAGCCTCTA 60.081 45.833 0.00 0.00 0.00 2.43
88 89 5.497474 GGTGATTGGAACTTTAGCCTCTAA 58.503 41.667 0.00 0.00 0.00 2.10
89 90 5.944007 GGTGATTGGAACTTTAGCCTCTAAA 59.056 40.000 0.00 0.00 0.00 1.85
90 91 6.433093 GGTGATTGGAACTTTAGCCTCTAAAA 59.567 38.462 1.38 0.00 0.00 1.52
91 92 7.039993 GGTGATTGGAACTTTAGCCTCTAAAAA 60.040 37.037 1.38 0.00 0.00 1.94
126 127 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
127 128 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
128 129 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
129 130 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
130 131 7.829706 GTCAGACTAAAAATAGTCCCTTGGATT 59.170 37.037 11.35 0.00 45.66 3.01
131 132 8.047310 TCAGACTAAAAATAGTCCCTTGGATTC 58.953 37.037 11.35 0.00 45.66 2.52
132 133 7.829211 CAGACTAAAAATAGTCCCTTGGATTCA 59.171 37.037 11.35 0.00 45.66 2.57
133 134 8.390921 AGACTAAAAATAGTCCCTTGGATTCAA 58.609 33.333 11.35 0.00 45.66 2.69
134 135 8.678199 GACTAAAAATAGTCCCTTGGATTCAAG 58.322 37.037 6.78 6.78 41.63 3.02
135 136 5.921962 AAAATAGTCCCTTGGATTCAAGC 57.078 39.130 8.38 0.00 46.69 4.01
136 137 4.591321 AATAGTCCCTTGGATTCAAGCA 57.409 40.909 8.38 0.00 46.69 3.91
137 138 4.803329 ATAGTCCCTTGGATTCAAGCAT 57.197 40.909 8.38 0.00 46.69 3.79
138 139 2.731572 AGTCCCTTGGATTCAAGCATG 58.268 47.619 8.38 0.00 46.69 4.06
139 140 1.135721 GTCCCTTGGATTCAAGCATGC 59.864 52.381 10.51 10.51 46.69 4.06
140 141 0.462789 CCCTTGGATTCAAGCATGCC 59.537 55.000 15.66 0.00 46.69 4.40
141 142 0.462789 CCTTGGATTCAAGCATGCCC 59.537 55.000 15.66 7.83 46.69 5.36
142 143 1.481871 CTTGGATTCAAGCATGCCCT 58.518 50.000 15.66 0.00 43.10 5.19
143 144 1.136305 CTTGGATTCAAGCATGCCCTG 59.864 52.381 15.66 12.63 43.10 4.45
144 145 0.332293 TGGATTCAAGCATGCCCTGA 59.668 50.000 15.66 14.94 0.00 3.86
145 146 0.743097 GGATTCAAGCATGCCCTGAC 59.257 55.000 15.66 6.75 0.00 3.51
146 147 1.684248 GGATTCAAGCATGCCCTGACT 60.684 52.381 15.66 11.78 0.00 3.41
147 148 2.421952 GGATTCAAGCATGCCCTGACTA 60.422 50.000 15.66 4.21 0.00 2.59
148 149 2.408271 TTCAAGCATGCCCTGACTAG 57.592 50.000 15.66 0.00 0.00 2.57
149 150 1.571955 TCAAGCATGCCCTGACTAGA 58.428 50.000 15.66 0.00 0.00 2.43
150 151 1.483827 TCAAGCATGCCCTGACTAGAG 59.516 52.381 15.66 0.00 0.00 2.43
151 152 1.483827 CAAGCATGCCCTGACTAGAGA 59.516 52.381 15.66 0.00 0.00 3.10
152 153 1.118838 AGCATGCCCTGACTAGAGAC 58.881 55.000 15.66 0.00 0.00 3.36
153 154 1.118838 GCATGCCCTGACTAGAGACT 58.881 55.000 6.36 0.00 0.00 3.24
154 155 2.091610 AGCATGCCCTGACTAGAGACTA 60.092 50.000 15.66 0.00 0.00 2.59
155 156 2.295909 GCATGCCCTGACTAGAGACTAG 59.704 54.545 6.36 0.00 0.00 2.57
156 157 3.561143 CATGCCCTGACTAGAGACTAGT 58.439 50.000 10.61 10.61 0.00 2.57
157 158 4.720046 CATGCCCTGACTAGAGACTAGTA 58.280 47.826 10.76 0.00 0.00 1.82
158 159 4.425180 TGCCCTGACTAGAGACTAGTAG 57.575 50.000 10.76 0.00 0.00 2.57
159 160 3.781407 TGCCCTGACTAGAGACTAGTAGT 59.219 47.826 1.37 1.37 31.97 2.73
160 161 4.967442 TGCCCTGACTAGAGACTAGTAGTA 59.033 45.833 1.88 2.09 29.34 1.82
161 162 5.070714 TGCCCTGACTAGAGACTAGTAGTAG 59.929 48.000 1.88 2.87 29.34 2.57
162 163 5.070847 GCCCTGACTAGAGACTAGTAGTAGT 59.929 48.000 10.09 10.09 42.59 2.73
176 177 7.688343 ACTAGTAGTAGTCACCTTTAGTCAGT 58.312 38.462 0.00 0.00 34.00 3.41
177 178 8.820831 ACTAGTAGTAGTCACCTTTAGTCAGTA 58.179 37.037 0.00 0.00 34.00 2.74
178 179 9.664332 CTAGTAGTAGTCACCTTTAGTCAGTAA 57.336 37.037 0.00 0.00 0.00 2.24
179 180 8.930846 AGTAGTAGTCACCTTTAGTCAGTAAA 57.069 34.615 0.00 0.00 0.00 2.01
180 181 8.791675 AGTAGTAGTCACCTTTAGTCAGTAAAC 58.208 37.037 0.00 0.00 0.00 2.01
181 182 6.990798 AGTAGTCACCTTTAGTCAGTAAACC 58.009 40.000 0.00 0.00 0.00 3.27
182 183 6.781507 AGTAGTCACCTTTAGTCAGTAAACCT 59.218 38.462 0.00 0.00 0.00 3.50
183 184 6.099159 AGTCACCTTTAGTCAGTAAACCTC 57.901 41.667 0.00 0.00 0.00 3.85
184 185 5.011840 AGTCACCTTTAGTCAGTAAACCTCC 59.988 44.000 0.00 0.00 0.00 4.30
185 186 4.903049 TCACCTTTAGTCAGTAAACCTCCA 59.097 41.667 0.00 0.00 0.00 3.86
186 187 5.367352 TCACCTTTAGTCAGTAAACCTCCAA 59.633 40.000 0.00 0.00 0.00 3.53
187 188 6.059484 CACCTTTAGTCAGTAAACCTCCAAA 58.941 40.000 0.00 0.00 0.00 3.28
188 189 6.017357 CACCTTTAGTCAGTAAACCTCCAAAC 60.017 42.308 0.00 0.00 0.00 2.93
189 190 6.059484 CCTTTAGTCAGTAAACCTCCAAACA 58.941 40.000 0.00 0.00 0.00 2.83
190 191 6.017357 CCTTTAGTCAGTAAACCTCCAAACAC 60.017 42.308 0.00 0.00 0.00 3.32
191 192 3.816994 AGTCAGTAAACCTCCAAACACC 58.183 45.455 0.00 0.00 0.00 4.16
192 193 2.882761 GTCAGTAAACCTCCAAACACCC 59.117 50.000 0.00 0.00 0.00 4.61
193 194 2.781174 TCAGTAAACCTCCAAACACCCT 59.219 45.455 0.00 0.00 0.00 4.34
194 195 3.203487 TCAGTAAACCTCCAAACACCCTT 59.797 43.478 0.00 0.00 0.00 3.95
195 196 3.317993 CAGTAAACCTCCAAACACCCTTG 59.682 47.826 0.00 0.00 0.00 3.61
196 197 2.838637 AAACCTCCAAACACCCTTGA 57.161 45.000 0.00 0.00 0.00 3.02
197 198 2.067365 AACCTCCAAACACCCTTGAC 57.933 50.000 0.00 0.00 0.00 3.18
198 199 1.222567 ACCTCCAAACACCCTTGACT 58.777 50.000 0.00 0.00 0.00 3.41
199 200 1.569072 ACCTCCAAACACCCTTGACTT 59.431 47.619 0.00 0.00 0.00 3.01
200 201 2.024369 ACCTCCAAACACCCTTGACTTT 60.024 45.455 0.00 0.00 0.00 2.66
201 202 3.031013 CCTCCAAACACCCTTGACTTTT 58.969 45.455 0.00 0.00 0.00 2.27
202 203 4.211920 CCTCCAAACACCCTTGACTTTTA 58.788 43.478 0.00 0.00 0.00 1.52
203 204 4.037565 CCTCCAAACACCCTTGACTTTTAC 59.962 45.833 0.00 0.00 0.00 2.01
204 205 4.862371 TCCAAACACCCTTGACTTTTACT 58.138 39.130 0.00 0.00 0.00 2.24
205 206 4.642885 TCCAAACACCCTTGACTTTTACTG 59.357 41.667 0.00 0.00 0.00 2.74
206 207 4.642885 CCAAACACCCTTGACTTTTACTGA 59.357 41.667 0.00 0.00 0.00 3.41
207 208 5.449999 CCAAACACCCTTGACTTTTACTGAC 60.450 44.000 0.00 0.00 0.00 3.51
208 209 4.772886 ACACCCTTGACTTTTACTGACT 57.227 40.909 0.00 0.00 0.00 3.41
209 210 5.881923 ACACCCTTGACTTTTACTGACTA 57.118 39.130 0.00 0.00 0.00 2.59
210 211 6.243216 ACACCCTTGACTTTTACTGACTAA 57.757 37.500 0.00 0.00 0.00 2.24
211 212 6.655930 ACACCCTTGACTTTTACTGACTAAA 58.344 36.000 0.00 0.00 0.00 1.85
212 213 6.766467 ACACCCTTGACTTTTACTGACTAAAG 59.234 38.462 0.00 0.00 37.38 1.85
213 214 6.766467 CACCCTTGACTTTTACTGACTAAAGT 59.234 38.462 0.00 0.00 44.78 2.66
214 215 7.282450 CACCCTTGACTTTTACTGACTAAAGTT 59.718 37.037 0.00 0.00 42.82 2.66
215 216 7.498239 ACCCTTGACTTTTACTGACTAAAGTTC 59.502 37.037 0.00 0.00 42.82 3.01
216 217 7.041303 CCCTTGACTTTTACTGACTAAAGTTCC 60.041 40.741 0.00 0.00 42.82 3.62
217 218 7.041303 CCTTGACTTTTACTGACTAAAGTTCCC 60.041 40.741 0.00 0.00 42.82 3.97
218 219 6.293698 TGACTTTTACTGACTAAAGTTCCCC 58.706 40.000 0.00 0.00 42.82 4.81
219 220 6.100714 TGACTTTTACTGACTAAAGTTCCCCT 59.899 38.462 0.00 0.00 42.82 4.79
220 221 6.531923 ACTTTTACTGACTAAAGTTCCCCTC 58.468 40.000 0.00 0.00 40.64 4.30
221 222 6.329460 ACTTTTACTGACTAAAGTTCCCCTCT 59.671 38.462 0.00 0.00 40.64 3.69
222 223 5.997384 TTACTGACTAAAGTTCCCCTCTC 57.003 43.478 0.00 0.00 0.00 3.20
223 224 4.134933 ACTGACTAAAGTTCCCCTCTCT 57.865 45.455 0.00 0.00 0.00 3.10
224 225 4.090819 ACTGACTAAAGTTCCCCTCTCTC 58.909 47.826 0.00 0.00 0.00 3.20
225 226 4.202738 ACTGACTAAAGTTCCCCTCTCTCT 60.203 45.833 0.00 0.00 0.00 3.10
226 227 4.345854 TGACTAAAGTTCCCCTCTCTCTC 58.654 47.826 0.00 0.00 0.00 3.20
227 228 3.702548 GACTAAAGTTCCCCTCTCTCTCC 59.297 52.174 0.00 0.00 0.00 3.71
228 229 3.338519 ACTAAAGTTCCCCTCTCTCTCCT 59.661 47.826 0.00 0.00 0.00 3.69
229 230 2.543037 AAGTTCCCCTCTCTCTCCTC 57.457 55.000 0.00 0.00 0.00 3.71
230 231 1.693799 AGTTCCCCTCTCTCTCCTCT 58.306 55.000 0.00 0.00 0.00 3.69
231 232 2.866515 AGTTCCCCTCTCTCTCCTCTA 58.133 52.381 0.00 0.00 0.00 2.43
232 233 3.203059 AGTTCCCCTCTCTCTCCTCTAA 58.797 50.000 0.00 0.00 0.00 2.10
233 234 3.797269 AGTTCCCCTCTCTCTCCTCTAAT 59.203 47.826 0.00 0.00 0.00 1.73
234 235 4.234223 AGTTCCCCTCTCTCTCCTCTAATT 59.766 45.833 0.00 0.00 0.00 1.40
235 236 4.191804 TCCCCTCTCTCTCCTCTAATTG 57.808 50.000 0.00 0.00 0.00 2.32
236 237 3.794399 TCCCCTCTCTCTCCTCTAATTGA 59.206 47.826 0.00 0.00 0.00 2.57
237 238 4.421911 TCCCCTCTCTCTCCTCTAATTGAT 59.578 45.833 0.00 0.00 0.00 2.57
238 239 4.527816 CCCCTCTCTCTCCTCTAATTGATG 59.472 50.000 0.00 0.00 0.00 3.07
239 240 5.147032 CCCTCTCTCTCCTCTAATTGATGT 58.853 45.833 0.00 0.00 0.00 3.06
240 241 5.602145 CCCTCTCTCTCCTCTAATTGATGTT 59.398 44.000 0.00 0.00 0.00 2.71
241 242 6.462768 CCCTCTCTCTCCTCTAATTGATGTTG 60.463 46.154 0.00 0.00 0.00 3.33
242 243 5.911752 TCTCTCTCCTCTAATTGATGTTGC 58.088 41.667 0.00 0.00 0.00 4.17
243 244 5.423290 TCTCTCTCCTCTAATTGATGTTGCA 59.577 40.000 0.00 0.00 0.00 4.08
244 245 5.423015 TCTCTCCTCTAATTGATGTTGCAC 58.577 41.667 0.00 0.00 0.00 4.57
245 246 5.046376 TCTCTCCTCTAATTGATGTTGCACA 60.046 40.000 0.00 0.00 0.00 4.57
246 247 5.559770 TCTCCTCTAATTGATGTTGCACAA 58.440 37.500 0.00 0.00 0.00 3.33
247 248 5.645067 TCTCCTCTAATTGATGTTGCACAAG 59.355 40.000 0.00 0.00 0.00 3.16
248 249 5.559770 TCCTCTAATTGATGTTGCACAAGA 58.440 37.500 0.00 0.00 0.00 3.02
249 250 5.645067 TCCTCTAATTGATGTTGCACAAGAG 59.355 40.000 0.00 0.00 0.00 2.85
250 251 5.645067 CCTCTAATTGATGTTGCACAAGAGA 59.355 40.000 11.63 7.79 0.00 3.10
251 252 6.402983 CCTCTAATTGATGTTGCACAAGAGAC 60.403 42.308 11.63 0.00 0.00 3.36
252 253 5.997129 TCTAATTGATGTTGCACAAGAGACA 59.003 36.000 0.00 0.00 0.00 3.41
253 254 5.717078 AATTGATGTTGCACAAGAGACAT 57.283 34.783 0.00 0.00 35.57 3.06
254 255 5.717078 ATTGATGTTGCACAAGAGACATT 57.283 34.783 1.23 0.00 33.21 2.71
255 256 5.518848 TTGATGTTGCACAAGAGACATTT 57.481 34.783 1.23 0.00 33.21 2.32
256 257 6.631971 TTGATGTTGCACAAGAGACATTTA 57.368 33.333 1.23 0.00 33.21 1.40
257 258 6.631971 TGATGTTGCACAAGAGACATTTAA 57.368 33.333 1.23 0.00 33.21 1.52
258 259 7.218228 TGATGTTGCACAAGAGACATTTAAT 57.782 32.000 1.23 0.00 33.21 1.40
259 260 8.334263 TGATGTTGCACAAGAGACATTTAATA 57.666 30.769 1.23 0.00 33.21 0.98
260 261 8.236586 TGATGTTGCACAAGAGACATTTAATAC 58.763 33.333 1.23 0.00 33.21 1.89
261 262 7.744087 TGTTGCACAAGAGACATTTAATACT 57.256 32.000 0.00 0.00 0.00 2.12
262 263 7.584108 TGTTGCACAAGAGACATTTAATACTG 58.416 34.615 0.00 0.00 0.00 2.74
263 264 7.443879 TGTTGCACAAGAGACATTTAATACTGA 59.556 33.333 0.00 0.00 0.00 3.41
264 265 7.601073 TGCACAAGAGACATTTAATACTGAG 57.399 36.000 0.00 0.00 0.00 3.35
265 266 7.386059 TGCACAAGAGACATTTAATACTGAGA 58.614 34.615 0.00 0.00 0.00 3.27
266 267 7.331934 TGCACAAGAGACATTTAATACTGAGAC 59.668 37.037 0.00 0.00 0.00 3.36
267 268 7.331934 GCACAAGAGACATTTAATACTGAGACA 59.668 37.037 0.00 0.00 0.00 3.41
268 269 9.376075 CACAAGAGACATTTAATACTGAGACAT 57.624 33.333 0.00 0.00 0.00 3.06
269 270 9.950496 ACAAGAGACATTTAATACTGAGACATT 57.050 29.630 0.00 0.00 0.00 2.71
300 301 3.693578 ACTAGTAGTAGTCACCTTTCGGC 59.306 47.826 0.00 0.00 34.00 5.54
301 302 1.823610 AGTAGTAGTCACCTTTCGGCC 59.176 52.381 0.00 0.00 0.00 6.13
302 303 1.823610 GTAGTAGTCACCTTTCGGCCT 59.176 52.381 0.00 0.00 0.00 5.19
303 304 0.608640 AGTAGTCACCTTTCGGCCTG 59.391 55.000 0.00 0.00 0.00 4.85
304 305 0.606604 GTAGTCACCTTTCGGCCTGA 59.393 55.000 0.00 0.00 0.00 3.86
305 306 0.606604 TAGTCACCTTTCGGCCTGAC 59.393 55.000 11.59 11.59 36.85 3.51
306 307 1.122019 AGTCACCTTTCGGCCTGACT 61.122 55.000 15.38 15.38 40.13 3.41
307 308 0.606604 GTCACCTTTCGGCCTGACTA 59.393 55.000 12.12 0.00 34.88 2.59
308 309 1.001633 GTCACCTTTCGGCCTGACTAA 59.998 52.381 12.12 0.00 34.88 2.24
309 310 1.695242 TCACCTTTCGGCCTGACTAAA 59.305 47.619 0.00 0.00 0.00 1.85
310 311 2.105134 TCACCTTTCGGCCTGACTAAAA 59.895 45.455 0.00 0.00 0.00 1.52
311 312 2.882137 CACCTTTCGGCCTGACTAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
312 313 2.882761 ACCTTTCGGCCTGACTAAAAAC 59.117 45.455 0.00 0.00 0.00 2.43
313 314 3.146847 CCTTTCGGCCTGACTAAAAACT 58.853 45.455 0.00 0.00 0.00 2.66
314 315 3.568430 CCTTTCGGCCTGACTAAAAACTT 59.432 43.478 0.00 0.00 0.00 2.66
315 316 4.320275 CCTTTCGGCCTGACTAAAAACTTC 60.320 45.833 0.00 0.00 0.00 3.01
316 317 3.764237 TCGGCCTGACTAAAAACTTCT 57.236 42.857 0.00 0.00 0.00 2.85
317 318 4.877378 TCGGCCTGACTAAAAACTTCTA 57.123 40.909 0.00 0.00 0.00 2.10
318 319 5.416271 TCGGCCTGACTAAAAACTTCTAT 57.584 39.130 0.00 0.00 0.00 1.98
319 320 5.801380 TCGGCCTGACTAAAAACTTCTATT 58.199 37.500 0.00 0.00 0.00 1.73
320 321 5.642063 TCGGCCTGACTAAAAACTTCTATTG 59.358 40.000 0.00 0.00 0.00 1.90
321 322 5.411669 CGGCCTGACTAAAAACTTCTATTGT 59.588 40.000 0.00 0.00 0.00 2.71
322 323 6.612306 GGCCTGACTAAAAACTTCTATTGTG 58.388 40.000 0.00 0.00 0.00 3.33
323 324 6.430000 GGCCTGACTAAAAACTTCTATTGTGA 59.570 38.462 0.00 0.00 0.00 3.58
324 325 7.298854 GCCTGACTAAAAACTTCTATTGTGAC 58.701 38.462 0.00 0.00 0.00 3.67
325 326 7.173390 GCCTGACTAAAAACTTCTATTGTGACT 59.827 37.037 0.00 0.00 0.00 3.41
326 327 9.706691 CCTGACTAAAAACTTCTATTGTGACTA 57.293 33.333 0.00 0.00 0.00 2.59
345 346 9.829507 TGTGACTACTACTACTAAAGAGTATCC 57.170 37.037 0.00 0.00 37.53 2.59
346 347 9.829507 GTGACTACTACTACTAAAGAGTATCCA 57.170 37.037 0.00 0.00 37.53 3.41
347 348 9.829507 TGACTACTACTACTAAAGAGTATCCAC 57.170 37.037 0.00 0.00 37.53 4.02
348 349 9.829507 GACTACTACTACTAAAGAGTATCCACA 57.170 37.037 0.00 0.00 37.53 4.17
349 350 9.612066 ACTACTACTACTAAAGAGTATCCACAC 57.388 37.037 0.00 0.00 37.53 3.82
350 351 9.610705 CTACTACTACTAAAGAGTATCCACACA 57.389 37.037 0.00 0.00 37.53 3.72
351 352 8.278729 ACTACTACTAAAGAGTATCCACACAC 57.721 38.462 0.00 0.00 37.53 3.82
352 353 6.527057 ACTACTAAAGAGTATCCACACACC 57.473 41.667 0.00 0.00 37.53 4.16
353 354 4.820894 ACTAAAGAGTATCCACACACCC 57.179 45.455 0.00 0.00 32.65 4.61
354 355 4.426704 ACTAAAGAGTATCCACACACCCT 58.573 43.478 0.00 0.00 32.65 4.34
355 356 3.983044 AAAGAGTATCCACACACCCTC 57.017 47.619 0.00 0.00 33.66 4.30
356 357 2.930109 AGAGTATCCACACACCCTCT 57.070 50.000 0.00 0.00 33.66 3.69
357 358 4.332683 AAGAGTATCCACACACCCTCTA 57.667 45.455 0.00 0.00 33.66 2.43
358 359 4.544564 AGAGTATCCACACACCCTCTAT 57.455 45.455 0.00 0.00 33.66 1.98
359 360 5.664815 AGAGTATCCACACACCCTCTATA 57.335 43.478 0.00 0.00 33.66 1.31
360 361 5.386924 AGAGTATCCACACACCCTCTATAC 58.613 45.833 0.00 0.00 33.66 1.47
361 362 5.103643 AGAGTATCCACACACCCTCTATACA 60.104 44.000 0.00 0.00 33.66 2.29
362 363 5.141182 AGTATCCACACACCCTCTATACAG 58.859 45.833 0.00 0.00 0.00 2.74
363 364 3.750501 TCCACACACCCTCTATACAGA 57.249 47.619 0.00 0.00 0.00 3.41
364 365 3.362706 TCCACACACCCTCTATACAGAC 58.637 50.000 0.00 0.00 0.00 3.51
365 366 3.096852 CCACACACCCTCTATACAGACA 58.903 50.000 0.00 0.00 0.00 3.41
366 367 3.706594 CCACACACCCTCTATACAGACAT 59.293 47.826 0.00 0.00 0.00 3.06
367 368 4.893524 CCACACACCCTCTATACAGACATA 59.106 45.833 0.00 0.00 0.00 2.29
368 369 5.221263 CCACACACCCTCTATACAGACATAC 60.221 48.000 0.00 0.00 0.00 2.39
369 370 5.359860 CACACACCCTCTATACAGACATACA 59.640 44.000 0.00 0.00 0.00 2.29
370 371 5.594725 ACACACCCTCTATACAGACATACAG 59.405 44.000 0.00 0.00 0.00 2.74
371 372 5.594725 CACACCCTCTATACAGACATACAGT 59.405 44.000 0.00 0.00 0.00 3.55
372 373 6.771267 CACACCCTCTATACAGACATACAGTA 59.229 42.308 0.00 0.00 0.00 2.74
373 374 6.771749 ACACCCTCTATACAGACATACAGTAC 59.228 42.308 0.00 0.00 0.00 2.73
374 375 5.996513 ACCCTCTATACAGACATACAGTACG 59.003 44.000 0.00 0.00 0.00 3.67
375 376 5.996513 CCCTCTATACAGACATACAGTACGT 59.003 44.000 0.00 0.00 0.00 3.57
420 421 0.109272 GGATCACGTCGCTGTTGAGA 60.109 55.000 0.00 0.00 0.00 3.27
462 463 2.608090 GTCGTAATTACCTGCCAGAAGC 59.392 50.000 10.01 0.00 44.14 3.86
506 507 5.130975 TGTGATTACGGAGGGAGTAGTAGTA 59.869 44.000 0.00 0.00 0.00 1.82
508 509 5.367937 TGATTACGGAGGGAGTAGTAGTAGT 59.632 44.000 0.00 0.00 0.00 2.73
511 512 5.700402 ACGGAGGGAGTAGTAGTAGTTTA 57.300 43.478 0.00 0.00 0.00 2.01
512 513 6.259346 ACGGAGGGAGTAGTAGTAGTTTAT 57.741 41.667 0.00 0.00 0.00 1.40
514 515 6.545298 ACGGAGGGAGTAGTAGTAGTTTATTG 59.455 42.308 0.00 0.00 0.00 1.90
515 516 6.769822 CGGAGGGAGTAGTAGTAGTTTATTGA 59.230 42.308 0.00 0.00 0.00 2.57
516 517 7.447853 CGGAGGGAGTAGTAGTAGTTTATTGAT 59.552 40.741 0.00 0.00 0.00 2.57
517 518 9.804977 GGAGGGAGTAGTAGTAGTTTATTGATA 57.195 37.037 0.00 0.00 0.00 2.15
568 586 4.498520 CGCTCTGACCATCGCCGT 62.499 66.667 0.00 0.00 0.00 5.68
623 641 1.375140 CAAAGCTCAGCTCCTCGCA 60.375 57.895 0.00 0.00 38.25 5.10
630 653 1.135915 CTCAGCTCCTCGCAGTACATT 59.864 52.381 0.00 0.00 42.61 2.71
631 654 2.359214 CTCAGCTCCTCGCAGTACATTA 59.641 50.000 0.00 0.00 42.61 1.90
632 655 2.099263 TCAGCTCCTCGCAGTACATTAC 59.901 50.000 0.00 0.00 42.61 1.89
666 689 5.254115 GGCTTAGTTAATCAGGAAAGGTGT 58.746 41.667 0.00 0.00 0.00 4.16
667 690 6.412214 GGCTTAGTTAATCAGGAAAGGTGTA 58.588 40.000 0.00 0.00 0.00 2.90
800 825 3.706373 GGCCTCTTCCTCCGTGCA 61.706 66.667 0.00 0.00 0.00 4.57
838 863 2.524394 ACGGAGGTGGCTGTCTGT 60.524 61.111 0.00 0.00 0.00 3.41
1372 1445 1.231751 ATCACTCCCCCTCCTCTCCA 61.232 60.000 0.00 0.00 0.00 3.86
1391 1464 1.521681 CCTCCCATTTCGAGGCGAC 60.522 63.158 0.00 0.00 40.55 5.19
1403 1476 0.389757 GAGGCGACTAGGTTGATCCC 59.610 60.000 0.00 0.00 44.43 3.85
1737 1810 1.498865 GGCGCCGGACATTCACATAG 61.499 60.000 12.58 0.00 0.00 2.23
1738 1811 0.810031 GCGCCGGACATTCACATAGT 60.810 55.000 5.05 0.00 0.00 2.12
1739 1812 1.537348 GCGCCGGACATTCACATAGTA 60.537 52.381 5.05 0.00 0.00 1.82
1769 1842 4.671590 TCTCCTGCGTCCCGTCCA 62.672 66.667 0.00 0.00 0.00 4.02
1843 1916 0.889306 GTCTACTCACTGGCGGTCTT 59.111 55.000 0.00 0.00 0.00 3.01
2037 2110 2.558359 GTCATTTGGTCCTGGGACTTTG 59.442 50.000 17.82 10.93 44.04 2.77
2064 2137 4.760047 ACCACCGGTCTGCGATGC 62.760 66.667 2.59 0.00 0.00 3.91
2150 2223 3.636231 CCGAGGGTGTGGCTTCCA 61.636 66.667 0.00 0.00 0.00 3.53
2153 2226 0.609131 CGAGGGTGTGGCTTCCATTT 60.609 55.000 0.00 0.00 35.28 2.32
2375 2451 1.523711 ATTCCTATGTGCCCGTGCG 60.524 57.895 0.00 0.00 41.78 5.34
2498 2574 0.584785 CGTTCGTGATGCGCTGATTG 60.585 55.000 9.73 0.00 41.07 2.67
2561 2637 5.309638 AGAAGCTCCAAGAACCTTAAGAAC 58.690 41.667 3.36 0.00 0.00 3.01
2566 2642 6.049790 GCTCCAAGAACCTTAAGAACGATAT 58.950 40.000 3.36 0.00 0.00 1.63
2567 2643 7.069578 AGCTCCAAGAACCTTAAGAACGATATA 59.930 37.037 3.36 0.00 0.00 0.86
2568 2644 7.382759 GCTCCAAGAACCTTAAGAACGATATAG 59.617 40.741 3.36 0.00 0.00 1.31
2569 2645 8.302515 TCCAAGAACCTTAAGAACGATATAGT 57.697 34.615 3.36 0.00 0.00 2.12
2570 2646 9.412460 TCCAAGAACCTTAAGAACGATATAGTA 57.588 33.333 3.36 0.00 0.00 1.82
2974 3050 0.400213 ATTTCCAGCGGACCAGTTCA 59.600 50.000 0.00 0.00 0.00 3.18
2983 3059 4.982916 CAGCGGACCAGTTCATACTAATAC 59.017 45.833 0.00 0.00 31.96 1.89
3145 3229 0.972883 GGGAGACTCTGTGTGCTTCT 59.027 55.000 1.74 0.00 0.00 2.85
3196 3281 5.443185 TTGCTCTCTTTTGATTCAACCAG 57.557 39.130 0.00 0.00 0.00 4.00
3274 3359 3.000322 CGCATCTAGTAACTTTGAAGGCG 60.000 47.826 0.00 0.00 33.01 5.52
3301 3386 3.057104 TGCGGAAGAAATCGAGTTAGTCA 60.057 43.478 0.00 0.00 0.00 3.41
3386 3475 9.382244 CTTAATAATTAATAAGAACGGCTGTGC 57.618 33.333 13.04 0.00 32.10 4.57
3387 3476 6.935741 ATAATTAATAAGAACGGCTGTGCA 57.064 33.333 6.39 0.00 0.00 4.57
3460 3552 3.982516 TCTAGTAACTCACAGAGGCCAT 58.017 45.455 5.01 0.00 33.35 4.40
3475 3567 4.345257 AGAGGCCATCTTATAATGTGTCGT 59.655 41.667 5.01 0.00 32.99 4.34
3507 3600 3.766545 AGTTTAAGTGTGCACCATGGAT 58.233 40.909 21.47 0.00 0.00 3.41
3534 3629 5.014858 CACTGGTTGAGGGAGTAGTAGTAA 58.985 45.833 0.00 0.00 0.00 2.24
3536 3631 4.021916 TGGTTGAGGGAGTAGTAGTAAGC 58.978 47.826 0.00 0.00 0.00 3.09
3575 3671 1.837090 GCGTGGGGTTCTATGGGAT 59.163 57.895 0.00 0.00 0.00 3.85
3578 3674 2.326428 CGTGGGGTTCTATGGGATAGT 58.674 52.381 0.00 0.00 34.47 2.12
3584 3680 7.256404 CGTGGGGTTCTATGGGATAGTATTTAA 60.256 40.741 0.00 0.00 34.47 1.52
3606 3702 3.679389 TCTGGTGCTGATTTTTCCTCTC 58.321 45.455 0.00 0.00 0.00 3.20
3638 3734 2.403259 CTGTGTTCAGTGCATACGACA 58.597 47.619 0.00 0.00 36.97 4.35
3662 3758 9.533253 ACATTATGTTTATTTTTCTATGCCAGC 57.467 29.630 0.00 0.00 0.00 4.85
3704 3882 4.520874 GCTATCTAGGAGACACTGTGCATA 59.479 45.833 7.90 0.00 0.00 3.14
3752 3930 4.394300 AGCAAACTTATGACTCTGTGCATC 59.606 41.667 0.00 0.00 33.21 3.91
3831 4009 7.054491 AGCAATCTCACCATGTTAAAAGTTT 57.946 32.000 0.00 0.00 0.00 2.66
3896 4074 4.580580 CCCCCTCTCATTTTATGCACTAAC 59.419 45.833 0.00 0.00 0.00 2.34
3965 4144 6.426937 GCAAGATGTTGTCTTCTGTTTACCTA 59.573 38.462 4.33 0.00 45.35 3.08
3975 4154 3.788937 TCTGTTTACCTATGTAAGCGCC 58.211 45.455 2.29 0.00 40.04 6.53
4016 4195 3.994392 GCGTGGAAGAGTTGTCAATTCTA 59.006 43.478 10.68 0.00 0.00 2.10
4017 4196 4.143094 GCGTGGAAGAGTTGTCAATTCTAC 60.143 45.833 10.68 7.27 31.91 2.59
4018 4197 4.389077 CGTGGAAGAGTTGTCAATTCTACC 59.611 45.833 10.68 6.48 31.63 3.18
4019 4198 4.389077 GTGGAAGAGTTGTCAATTCTACCG 59.611 45.833 10.68 0.00 29.76 4.02
4020 4199 4.282449 TGGAAGAGTTGTCAATTCTACCGA 59.718 41.667 10.68 2.12 0.00 4.69
4021 4200 5.046591 TGGAAGAGTTGTCAATTCTACCGAT 60.047 40.000 10.68 0.00 0.00 4.18
4022 4201 5.292101 GGAAGAGTTGTCAATTCTACCGATG 59.708 44.000 10.68 0.00 0.00 3.84
4023 4202 4.759782 AGAGTTGTCAATTCTACCGATGG 58.240 43.478 8.73 0.00 0.00 3.51
4024 4203 4.466370 AGAGTTGTCAATTCTACCGATGGA 59.534 41.667 8.73 0.00 0.00 3.41
4025 4204 5.046591 AGAGTTGTCAATTCTACCGATGGAA 60.047 40.000 8.73 0.00 0.00 3.53
4026 4205 5.745227 AGTTGTCAATTCTACCGATGGAAT 58.255 37.500 0.00 0.00 37.62 3.01
4027 4206 5.586243 AGTTGTCAATTCTACCGATGGAATG 59.414 40.000 0.00 0.00 36.26 2.67
4028 4207 5.097742 TGTCAATTCTACCGATGGAATGT 57.902 39.130 0.00 0.00 36.26 2.71
4029 4208 5.116180 TGTCAATTCTACCGATGGAATGTC 58.884 41.667 0.00 0.00 36.26 3.06
4030 4209 5.104941 TGTCAATTCTACCGATGGAATGTCT 60.105 40.000 0.00 0.00 36.26 3.41
4031 4210 5.817816 GTCAATTCTACCGATGGAATGTCTT 59.182 40.000 0.00 0.00 36.26 3.01
4032 4211 6.018669 GTCAATTCTACCGATGGAATGTCTTC 60.019 42.308 0.00 0.00 36.26 2.87
4033 4212 5.878406 ATTCTACCGATGGAATGTCTTCT 57.122 39.130 0.00 0.00 34.91 2.85
4034 4213 4.655762 TCTACCGATGGAATGTCTTCTG 57.344 45.455 0.00 0.00 0.00 3.02
4035 4214 4.023980 TCTACCGATGGAATGTCTTCTGT 58.976 43.478 0.00 0.00 0.00 3.41
4036 4215 3.703001 ACCGATGGAATGTCTTCTGTT 57.297 42.857 0.00 0.00 0.00 3.16
4037 4216 4.021102 ACCGATGGAATGTCTTCTGTTT 57.979 40.909 0.00 0.00 0.00 2.83
4038 4217 5.160607 ACCGATGGAATGTCTTCTGTTTA 57.839 39.130 0.00 0.00 0.00 2.01
4039 4218 4.935808 ACCGATGGAATGTCTTCTGTTTAC 59.064 41.667 0.00 0.00 0.00 2.01
4040 4219 4.332819 CCGATGGAATGTCTTCTGTTTACC 59.667 45.833 0.00 0.00 0.00 2.85
4041 4220 5.178797 CGATGGAATGTCTTCTGTTTACCT 58.821 41.667 0.00 0.00 0.00 3.08
4042 4221 6.338146 CGATGGAATGTCTTCTGTTTACCTA 58.662 40.000 0.00 0.00 0.00 3.08
4043 4222 6.986817 CGATGGAATGTCTTCTGTTTACCTAT 59.013 38.462 0.00 0.00 0.00 2.57
4044 4223 7.042456 CGATGGAATGTCTTCTGTTTACCTATG 60.042 40.741 0.00 0.00 0.00 2.23
4045 4224 7.016153 TGGAATGTCTTCTGTTTACCTATGT 57.984 36.000 0.00 0.00 0.00 2.29
4046 4225 8.141298 TGGAATGTCTTCTGTTTACCTATGTA 57.859 34.615 0.00 0.00 0.00 2.29
4047 4226 8.598916 TGGAATGTCTTCTGTTTACCTATGTAA 58.401 33.333 0.00 0.00 35.17 2.41
4048 4227 9.099454 GGAATGTCTTCTGTTTACCTATGTAAG 57.901 37.037 0.00 0.00 38.17 2.34
4049 4228 8.494016 AATGTCTTCTGTTTACCTATGTAAGC 57.506 34.615 0.00 0.00 38.17 3.09
4050 4229 6.097356 TGTCTTCTGTTTACCTATGTAAGCG 58.903 40.000 1.53 0.00 40.04 4.68
4051 4230 5.005490 GTCTTCTGTTTACCTATGTAAGCGC 59.995 44.000 0.00 0.00 40.04 5.92
4052 4231 3.788937 TCTGTTTACCTATGTAAGCGCC 58.211 45.455 2.29 0.00 40.04 6.53
4053 4232 2.538449 CTGTTTACCTATGTAAGCGCCG 59.462 50.000 2.29 0.00 40.04 6.46
4054 4233 1.259770 GTTTACCTATGTAAGCGCCGC 59.740 52.381 2.29 0.00 38.17 6.53
4055 4234 0.748450 TTACCTATGTAAGCGCCGCT 59.252 50.000 5.39 5.39 42.56 5.52
4065 4244 2.780595 AGCGCCGCTTAATGATTGT 58.219 47.368 5.39 0.00 33.89 2.71
4066 4245 1.948104 AGCGCCGCTTAATGATTGTA 58.052 45.000 5.39 0.00 33.89 2.41
4067 4246 1.867233 AGCGCCGCTTAATGATTGTAG 59.133 47.619 5.39 0.00 33.89 2.74
4068 4247 1.597663 GCGCCGCTTAATGATTGTAGT 59.402 47.619 0.00 0.00 0.00 2.73
4069 4248 2.031683 GCGCCGCTTAATGATTGTAGTT 59.968 45.455 0.00 0.00 0.00 2.24
4070 4249 3.486875 GCGCCGCTTAATGATTGTAGTTT 60.487 43.478 0.00 0.00 0.00 2.66
4071 4250 4.028383 CGCCGCTTAATGATTGTAGTTTG 58.972 43.478 0.00 0.00 0.00 2.93
4072 4251 3.791353 GCCGCTTAATGATTGTAGTTTGC 59.209 43.478 0.00 0.00 0.00 3.68
4073 4252 4.028383 CCGCTTAATGATTGTAGTTTGCG 58.972 43.478 0.00 0.00 39.46 4.85
4074 4253 4.436852 CCGCTTAATGATTGTAGTTTGCGT 60.437 41.667 0.00 0.00 38.32 5.24
4075 4254 4.491942 CGCTTAATGATTGTAGTTTGCGTG 59.508 41.667 0.00 0.00 35.82 5.34
4076 4255 4.793216 GCTTAATGATTGTAGTTTGCGTGG 59.207 41.667 0.00 0.00 0.00 4.94
4077 4256 5.391523 GCTTAATGATTGTAGTTTGCGTGGA 60.392 40.000 0.00 0.00 0.00 4.02
4078 4257 6.561737 TTAATGATTGTAGTTTGCGTGGAA 57.438 33.333 0.00 0.00 0.00 3.53
4079 4258 4.685169 ATGATTGTAGTTTGCGTGGAAG 57.315 40.909 0.00 0.00 0.00 3.46
4080 4259 3.734463 TGATTGTAGTTTGCGTGGAAGA 58.266 40.909 0.00 0.00 0.00 2.87
4081 4260 3.745975 TGATTGTAGTTTGCGTGGAAGAG 59.254 43.478 0.00 0.00 0.00 2.85
4082 4261 2.902705 TGTAGTTTGCGTGGAAGAGT 57.097 45.000 0.00 0.00 0.00 3.24
4083 4262 3.188159 TGTAGTTTGCGTGGAAGAGTT 57.812 42.857 0.00 0.00 0.00 3.01
4084 4263 2.869801 TGTAGTTTGCGTGGAAGAGTTG 59.130 45.455 0.00 0.00 0.00 3.16
4085 4264 2.038387 AGTTTGCGTGGAAGAGTTGT 57.962 45.000 0.00 0.00 0.00 3.32
4086 4265 1.940613 AGTTTGCGTGGAAGAGTTGTC 59.059 47.619 0.00 0.00 0.00 3.18
4087 4266 1.668751 GTTTGCGTGGAAGAGTTGTCA 59.331 47.619 0.00 0.00 0.00 3.58
4088 4267 2.031258 TTGCGTGGAAGAGTTGTCAA 57.969 45.000 0.00 0.00 0.00 3.18
4089 4268 2.254546 TGCGTGGAAGAGTTGTCAAT 57.745 45.000 0.00 0.00 0.00 2.57
4090 4269 2.571212 TGCGTGGAAGAGTTGTCAATT 58.429 42.857 0.00 0.00 0.00 2.32
4091 4270 2.548057 TGCGTGGAAGAGTTGTCAATTC 59.452 45.455 0.00 0.00 0.00 2.17
4092 4271 2.808543 GCGTGGAAGAGTTGTCAATTCT 59.191 45.455 4.83 4.83 0.00 2.40
4231 4411 3.567886 GGGGTCCCCTTTTGATATTTGGT 60.568 47.826 21.13 0.00 41.34 3.67
4297 4477 1.016130 CATCTTCTCTTGTGCGGCGT 61.016 55.000 9.37 0.00 0.00 5.68
4525 4705 4.403734 ACCGTGAATGGAAAACCAAGTAT 58.596 39.130 0.00 0.00 0.00 2.12
4645 4825 3.464907 CATTGAGGATGATTCAGTCGCT 58.535 45.455 0.00 0.00 38.03 4.93
4711 4891 4.024048 CGCAATTTCACAGTTAGGACAGTT 60.024 41.667 0.00 0.00 0.00 3.16
4762 4942 1.961277 CGCAGACGCCAAGGTTTCT 60.961 57.895 0.00 0.00 33.11 2.52
4789 4969 1.675714 GCCGATGATCACAACTGGTCA 60.676 52.381 0.00 0.00 41.94 4.02
4807 4987 3.399181 GGCCTCGATGGGGTGACA 61.399 66.667 0.00 0.00 36.00 3.58
4856 5036 2.675371 TCTCCGAGGAGAAGGCGA 59.325 61.111 18.69 0.00 46.89 5.54
4884 5064 3.771160 ACGAGCCGTCCCACCATC 61.771 66.667 0.00 0.00 33.69 3.51
4922 5103 2.955660 CCCCTTGTTGTTTGTTGCTCTA 59.044 45.455 0.00 0.00 0.00 2.43
4937 5118 3.689347 TGCTCTACGTTTAGGGTAGTGA 58.311 45.455 0.00 0.00 38.74 3.41
4989 5170 3.737774 GGAACAAGCTTCTGATTTGTTGC 59.262 43.478 15.52 14.70 43.03 4.17
5088 5270 9.846248 AAACTGTATATCTTGAATGACAAAAGC 57.154 29.630 0.00 0.00 38.08 3.51
5093 5275 3.476552 TCTTGAATGACAAAAGCCTCGT 58.523 40.909 0.00 0.00 38.08 4.18
5159 5356 1.005340 CTCGAACAGAGCATGCCTTC 58.995 55.000 15.66 6.44 40.54 3.46
5206 5403 2.446753 TAAAACGGGCAAAGCGACGC 62.447 55.000 13.03 13.03 34.09 5.19
5276 5664 3.112263 TCGGGTGATCTGTAAATTCCCT 58.888 45.455 0.00 0.00 0.00 4.20
5297 5685 1.579429 CCGGCACTTGGCTTTGTAC 59.421 57.895 0.90 0.00 44.01 2.90
5298 5686 0.889186 CCGGCACTTGGCTTTGTACT 60.889 55.000 0.90 0.00 44.01 2.73
5299 5687 0.238289 CGGCACTTGGCTTTGTACTG 59.762 55.000 0.90 0.00 44.01 2.74
5300 5688 1.318576 GGCACTTGGCTTTGTACTGT 58.681 50.000 0.00 0.00 44.01 3.55
5301 5689 2.500229 GGCACTTGGCTTTGTACTGTA 58.500 47.619 0.00 0.00 44.01 2.74
5353 5756 2.844122 GGGTTTGCTAGCCGTTTATG 57.156 50.000 13.29 0.00 34.09 1.90
5354 5757 1.202256 GGGTTTGCTAGCCGTTTATGC 60.202 52.381 13.29 0.00 34.09 3.14
5355 5758 1.202256 GGTTTGCTAGCCGTTTATGCC 60.202 52.381 13.29 0.00 0.00 4.40
5356 5759 1.743394 GTTTGCTAGCCGTTTATGCCT 59.257 47.619 13.29 0.00 0.00 4.75
5357 5760 2.122783 TTGCTAGCCGTTTATGCCTT 57.877 45.000 13.29 0.00 0.00 4.35
5360 5763 2.163412 TGCTAGCCGTTTATGCCTTTTG 59.837 45.455 13.29 0.00 0.00 2.44
5375 5791 4.082679 TGCCTTTTGTTAGACACGTGTTTT 60.083 37.500 24.26 16.47 0.00 2.43
5399 5815 1.994779 CTTTCGGTTTTGCCATCATGC 59.005 47.619 0.00 0.00 36.97 4.06
5519 5941 1.186200 GATCCTTGGTCCCTTTTGGC 58.814 55.000 0.00 0.00 38.58 4.52
5525 5947 2.434774 GTCCCTTTTGGCGACCCT 59.565 61.111 0.00 0.00 38.58 4.34
5526 5948 1.971695 GTCCCTTTTGGCGACCCTG 60.972 63.158 0.00 0.00 38.58 4.45
5527 5949 2.115266 CCCTTTTGGCGACCCTGT 59.885 61.111 0.00 0.00 38.58 4.00
5529 5951 2.268076 CCTTTTGGCGACCCTGTGG 61.268 63.158 0.00 0.00 37.80 4.17
5530 5952 1.228124 CTTTTGGCGACCCTGTGGA 60.228 57.895 0.00 0.00 34.81 4.02
5531 5953 1.228124 TTTTGGCGACCCTGTGGAG 60.228 57.895 0.00 0.00 34.81 3.86
5532 5954 3.842925 TTTGGCGACCCTGTGGAGC 62.843 63.158 0.00 0.00 37.83 4.70
5540 5962 4.680237 CCTGTGGAGCGCGGACAA 62.680 66.667 8.83 0.00 0.00 3.18
5541 5963 2.664851 CTGTGGAGCGCGGACAAA 60.665 61.111 8.83 0.00 0.00 2.83
5542 5964 2.954753 CTGTGGAGCGCGGACAAAC 61.955 63.158 8.83 1.52 0.00 2.93
5543 5965 3.723348 GTGGAGCGCGGACAAACC 61.723 66.667 8.83 0.00 0.00 3.27
5544 5966 4.243008 TGGAGCGCGGACAAACCA 62.243 61.111 8.83 1.69 38.90 3.67
5545 5967 2.975799 GGAGCGCGGACAAACCAA 60.976 61.111 8.83 0.00 38.90 3.67
5546 5968 2.548295 GGAGCGCGGACAAACCAAA 61.548 57.895 8.83 0.00 38.90 3.28
5547 5969 1.579429 GAGCGCGGACAAACCAAAT 59.421 52.632 8.83 0.00 38.90 2.32
5548 5970 0.454452 GAGCGCGGACAAACCAAATC 60.454 55.000 8.83 0.00 38.90 2.17
5549 5971 1.443702 GCGCGGACAAACCAAATCC 60.444 57.895 8.83 0.00 38.90 3.01
5554 5976 1.905637 GGACAAACCAAATCCGGTCT 58.094 50.000 0.00 0.00 38.76 3.85
5628 6055 2.357517 CAGAAACTCCGCTGCCGT 60.358 61.111 0.00 0.00 0.00 5.68
5733 6165 1.353103 CGCGACCATTTCCAGCATC 59.647 57.895 0.00 0.00 0.00 3.91
5801 6239 1.975363 GAGCTGCTGTGCGATGGTTC 61.975 60.000 7.01 0.00 38.13 3.62
5858 6299 3.169155 TTGCTCTGCTGTGCTCCGT 62.169 57.895 16.89 0.00 34.18 4.69
5947 6388 4.083862 GGTGGGGCTGGACGAGTC 62.084 72.222 0.00 0.00 0.00 3.36
5948 6389 4.436998 GTGGGGCTGGACGAGTCG 62.437 72.222 11.85 11.85 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.828712 TGACTAAAAAGAGGCTAGAACTAGTC 58.171 38.462 14.17 14.17 38.03 2.59
38 39 7.093684 CCTGACTAAAAAGAGGCTAGAACTAGT 60.094 40.741 10.03 0.00 35.65 2.57
39 40 7.262048 CCTGACTAAAAAGAGGCTAGAACTAG 58.738 42.308 0.00 4.67 36.29 2.57
40 41 6.154706 CCCTGACTAAAAAGAGGCTAGAACTA 59.845 42.308 0.00 0.00 0.00 2.24
41 42 5.046231 CCCTGACTAAAAAGAGGCTAGAACT 60.046 44.000 0.00 0.00 0.00 3.01
42 43 5.179533 CCCTGACTAAAAAGAGGCTAGAAC 58.820 45.833 0.00 0.00 0.00 3.01
43 44 4.225267 CCCCTGACTAAAAAGAGGCTAGAA 59.775 45.833 0.00 0.00 0.00 2.10
44 45 3.775316 CCCCTGACTAAAAAGAGGCTAGA 59.225 47.826 0.00 0.00 0.00 2.43
45 46 3.519913 ACCCCTGACTAAAAAGAGGCTAG 59.480 47.826 0.00 0.00 0.00 3.42
46 47 3.263425 CACCCCTGACTAAAAAGAGGCTA 59.737 47.826 0.00 0.00 0.00 3.93
47 48 2.040412 CACCCCTGACTAAAAAGAGGCT 59.960 50.000 0.00 0.00 0.00 4.58
48 49 2.039879 TCACCCCTGACTAAAAAGAGGC 59.960 50.000 0.00 0.00 0.00 4.70
49 50 4.576330 ATCACCCCTGACTAAAAAGAGG 57.424 45.455 0.00 0.00 0.00 3.69
50 51 4.702131 CCAATCACCCCTGACTAAAAAGAG 59.298 45.833 0.00 0.00 0.00 2.85
51 52 4.352595 TCCAATCACCCCTGACTAAAAAGA 59.647 41.667 0.00 0.00 0.00 2.52
52 53 4.662278 TCCAATCACCCCTGACTAAAAAG 58.338 43.478 0.00 0.00 0.00 2.27
53 54 4.733077 TCCAATCACCCCTGACTAAAAA 57.267 40.909 0.00 0.00 0.00 1.94
54 55 4.105697 AGTTCCAATCACCCCTGACTAAAA 59.894 41.667 0.00 0.00 0.00 1.52
55 56 3.655777 AGTTCCAATCACCCCTGACTAAA 59.344 43.478 0.00 0.00 0.00 1.85
56 57 3.256704 AGTTCCAATCACCCCTGACTAA 58.743 45.455 0.00 0.00 0.00 2.24
57 58 2.915869 AGTTCCAATCACCCCTGACTA 58.084 47.619 0.00 0.00 0.00 2.59
58 59 1.747444 AGTTCCAATCACCCCTGACT 58.253 50.000 0.00 0.00 0.00 3.41
59 60 2.586648 AAGTTCCAATCACCCCTGAC 57.413 50.000 0.00 0.00 0.00 3.51
60 61 3.561313 GCTAAAGTTCCAATCACCCCTGA 60.561 47.826 0.00 0.00 0.00 3.86
61 62 2.755103 GCTAAAGTTCCAATCACCCCTG 59.245 50.000 0.00 0.00 0.00 4.45
62 63 2.291605 GGCTAAAGTTCCAATCACCCCT 60.292 50.000 0.00 0.00 0.00 4.79
63 64 2.100197 GGCTAAAGTTCCAATCACCCC 58.900 52.381 0.00 0.00 0.00 4.95
64 65 3.017442 GAGGCTAAAGTTCCAATCACCC 58.983 50.000 0.00 0.00 0.00 4.61
65 66 3.956744 AGAGGCTAAAGTTCCAATCACC 58.043 45.455 0.00 0.00 0.00 4.02
66 67 7.448748 TTTTAGAGGCTAAAGTTCCAATCAC 57.551 36.000 0.00 0.00 0.00 3.06
100 101 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
101 102 8.319146 CCAAGGGACTATTTTTAGTCTGACTAA 58.681 37.037 22.80 22.80 44.35 2.24
102 103 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
103 104 6.500751 TCCAAGGGACTATTTTTAGTCTGACT 59.499 38.462 15.57 15.57 44.35 3.41
104 105 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
105 106 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
106 107 7.829211 TGAATCCAAGGGACTATTTTTAGTCTG 59.171 37.037 11.69 4.29 44.35 3.51
107 108 7.928873 TGAATCCAAGGGACTATTTTTAGTCT 58.071 34.615 11.69 0.00 44.35 3.24
108 109 8.575649 TTGAATCCAAGGGACTATTTTTAGTC 57.424 34.615 4.87 4.87 44.23 2.59
109 110 8.581253 CTTGAATCCAAGGGACTATTTTTAGT 57.419 34.615 0.00 0.00 44.58 2.24
124 125 1.187974 CAGGGCATGCTTGAATCCAA 58.812 50.000 18.92 0.00 0.00 3.53
125 126 0.332293 TCAGGGCATGCTTGAATCCA 59.668 50.000 18.92 0.00 0.00 3.41
126 127 0.743097 GTCAGGGCATGCTTGAATCC 59.257 55.000 18.92 9.06 0.00 3.01
127 128 1.760192 AGTCAGGGCATGCTTGAATC 58.240 50.000 18.92 10.62 0.00 2.52
128 129 2.507058 TCTAGTCAGGGCATGCTTGAAT 59.493 45.455 22.22 22.22 0.00 2.57
129 130 1.908619 TCTAGTCAGGGCATGCTTGAA 59.091 47.619 18.92 7.21 0.00 2.69
130 131 1.483827 CTCTAGTCAGGGCATGCTTGA 59.516 52.381 18.92 18.11 0.00 3.02
131 132 1.483827 TCTCTAGTCAGGGCATGCTTG 59.516 52.381 18.92 16.09 0.00 4.01
132 133 1.484240 GTCTCTAGTCAGGGCATGCTT 59.516 52.381 18.92 3.29 0.00 3.91
133 134 1.118838 GTCTCTAGTCAGGGCATGCT 58.881 55.000 18.92 0.00 0.00 3.79
134 135 1.118838 AGTCTCTAGTCAGGGCATGC 58.881 55.000 9.90 9.90 0.00 4.06
135 136 3.561143 ACTAGTCTCTAGTCAGGGCATG 58.439 50.000 3.91 0.00 0.00 4.06
136 137 3.963476 ACTAGTCTCTAGTCAGGGCAT 57.037 47.619 3.91 0.00 0.00 4.40
137 138 3.781407 ACTACTAGTCTCTAGTCAGGGCA 59.219 47.826 11.90 0.00 0.00 5.36
138 139 4.426736 ACTACTAGTCTCTAGTCAGGGC 57.573 50.000 11.90 0.00 0.00 5.19
139 140 6.324512 TGACTACTACTAGTCTCTAGTCAGGG 59.675 46.154 21.95 7.87 46.53 4.45
140 141 7.205297 GTGACTACTACTAGTCTCTAGTCAGG 58.795 46.154 24.28 10.88 46.53 3.86
141 142 7.069085 AGGTGACTACTACTAGTCTCTAGTCAG 59.931 44.444 24.28 13.34 46.53 3.51
142 143 6.896860 AGGTGACTACTACTAGTCTCTAGTCA 59.103 42.308 21.95 21.95 46.53 3.41
143 144 7.352079 AGGTGACTACTACTAGTCTCTAGTC 57.648 44.000 18.91 18.91 46.53 2.59
144 145 7.738437 AAGGTGACTACTACTAGTCTCTAGT 57.262 40.000 0.00 12.91 46.53 2.57
145 146 9.754382 CTAAAGGTGACTACTACTAGTCTCTAG 57.246 40.741 0.00 0.00 46.53 2.43
146 147 9.265862 ACTAAAGGTGACTACTACTAGTCTCTA 57.734 37.037 0.00 0.00 46.53 2.43
147 148 8.149631 ACTAAAGGTGACTACTACTAGTCTCT 57.850 38.462 0.00 5.95 46.53 3.10
148 149 8.040132 TGACTAAAGGTGACTACTACTAGTCTC 58.960 40.741 0.00 6.95 46.53 3.36
149 150 7.915930 TGACTAAAGGTGACTACTACTAGTCT 58.084 38.462 0.00 0.00 46.53 3.24
150 151 7.823799 ACTGACTAAAGGTGACTACTACTAGTC 59.176 40.741 0.00 3.34 46.56 2.59
151 152 7.688343 ACTGACTAAAGGTGACTACTACTAGT 58.312 38.462 0.00 0.00 42.68 2.57
152 153 9.664332 TTACTGACTAAAGGTGACTACTACTAG 57.336 37.037 0.00 0.00 42.68 2.57
154 155 8.791675 GTTTACTGACTAAAGGTGACTACTACT 58.208 37.037 0.00 0.00 42.68 2.57
155 156 8.026026 GGTTTACTGACTAAAGGTGACTACTAC 58.974 40.741 0.00 0.00 42.68 2.73
156 157 7.946776 AGGTTTACTGACTAAAGGTGACTACTA 59.053 37.037 0.00 0.00 42.68 1.82
157 158 6.781507 AGGTTTACTGACTAAAGGTGACTACT 59.218 38.462 0.00 0.00 42.68 2.57
158 159 6.990798 AGGTTTACTGACTAAAGGTGACTAC 58.009 40.000 0.00 0.00 42.68 2.73
159 160 6.210185 GGAGGTTTACTGACTAAAGGTGACTA 59.790 42.308 0.00 0.00 42.68 2.59
161 162 5.221581 TGGAGGTTTACTGACTAAAGGTGAC 60.222 44.000 0.00 0.00 0.00 3.67
162 163 4.903049 TGGAGGTTTACTGACTAAAGGTGA 59.097 41.667 0.00 0.00 0.00 4.02
163 164 5.223449 TGGAGGTTTACTGACTAAAGGTG 57.777 43.478 0.00 0.00 0.00 4.00
164 165 5.899631 TTGGAGGTTTACTGACTAAAGGT 57.100 39.130 0.00 0.00 0.00 3.50
165 166 6.017357 GTGTTTGGAGGTTTACTGACTAAAGG 60.017 42.308 0.00 0.00 0.00 3.11
166 167 6.017357 GGTGTTTGGAGGTTTACTGACTAAAG 60.017 42.308 0.00 0.00 0.00 1.85
167 168 5.824097 GGTGTTTGGAGGTTTACTGACTAAA 59.176 40.000 0.00 0.00 0.00 1.85
168 169 5.370679 GGTGTTTGGAGGTTTACTGACTAA 58.629 41.667 0.00 0.00 0.00 2.24
169 170 4.202388 GGGTGTTTGGAGGTTTACTGACTA 60.202 45.833 0.00 0.00 0.00 2.59
170 171 3.434596 GGGTGTTTGGAGGTTTACTGACT 60.435 47.826 0.00 0.00 0.00 3.41
171 172 2.882761 GGGTGTTTGGAGGTTTACTGAC 59.117 50.000 0.00 0.00 0.00 3.51
172 173 2.781174 AGGGTGTTTGGAGGTTTACTGA 59.219 45.455 0.00 0.00 0.00 3.41
173 174 3.223674 AGGGTGTTTGGAGGTTTACTG 57.776 47.619 0.00 0.00 0.00 2.74
174 175 3.203487 TCAAGGGTGTTTGGAGGTTTACT 59.797 43.478 0.00 0.00 0.00 2.24
175 176 3.317149 GTCAAGGGTGTTTGGAGGTTTAC 59.683 47.826 0.00 0.00 0.00 2.01
176 177 3.203487 AGTCAAGGGTGTTTGGAGGTTTA 59.797 43.478 0.00 0.00 0.00 2.01
177 178 2.024369 AGTCAAGGGTGTTTGGAGGTTT 60.024 45.455 0.00 0.00 0.00 3.27
178 179 1.569072 AGTCAAGGGTGTTTGGAGGTT 59.431 47.619 0.00 0.00 0.00 3.50
179 180 1.222567 AGTCAAGGGTGTTTGGAGGT 58.777 50.000 0.00 0.00 0.00 3.85
180 181 2.364972 AAGTCAAGGGTGTTTGGAGG 57.635 50.000 0.00 0.00 0.00 4.30
181 182 4.887655 AGTAAAAGTCAAGGGTGTTTGGAG 59.112 41.667 0.00 0.00 0.00 3.86
182 183 4.642885 CAGTAAAAGTCAAGGGTGTTTGGA 59.357 41.667 0.00 0.00 0.00 3.53
183 184 4.642885 TCAGTAAAAGTCAAGGGTGTTTGG 59.357 41.667 0.00 0.00 0.00 3.28
184 185 5.357032 AGTCAGTAAAAGTCAAGGGTGTTTG 59.643 40.000 0.00 0.00 0.00 2.93
185 186 5.506708 AGTCAGTAAAAGTCAAGGGTGTTT 58.493 37.500 0.00 0.00 0.00 2.83
186 187 5.112129 AGTCAGTAAAAGTCAAGGGTGTT 57.888 39.130 0.00 0.00 0.00 3.32
187 188 4.772886 AGTCAGTAAAAGTCAAGGGTGT 57.227 40.909 0.00 0.00 0.00 4.16
188 189 6.766467 ACTTTAGTCAGTAAAAGTCAAGGGTG 59.234 38.462 0.00 0.00 40.96 4.61
189 190 6.896883 ACTTTAGTCAGTAAAAGTCAAGGGT 58.103 36.000 0.00 0.00 40.96 4.34
190 191 7.041303 GGAACTTTAGTCAGTAAAAGTCAAGGG 60.041 40.741 1.33 0.00 43.35 3.95
191 192 7.041303 GGGAACTTTAGTCAGTAAAAGTCAAGG 60.041 40.741 1.33 0.00 43.35 3.61
192 193 7.041303 GGGGAACTTTAGTCAGTAAAAGTCAAG 60.041 40.741 1.33 0.00 43.35 3.02
193 194 6.769341 GGGGAACTTTAGTCAGTAAAAGTCAA 59.231 38.462 1.33 0.00 43.35 3.18
194 195 6.100714 AGGGGAACTTTAGTCAGTAAAAGTCA 59.899 38.462 1.33 0.00 43.35 3.41
195 196 6.531923 AGGGGAACTTTAGTCAGTAAAAGTC 58.468 40.000 1.33 0.00 43.35 3.01
196 197 6.329460 AGAGGGGAACTTTAGTCAGTAAAAGT 59.671 38.462 0.00 0.00 45.44 2.66
197 198 6.770542 AGAGGGGAACTTTAGTCAGTAAAAG 58.229 40.000 0.00 0.00 38.41 2.27
198 199 6.557633 AGAGAGGGGAACTTTAGTCAGTAAAA 59.442 38.462 0.00 0.00 29.93 1.52
199 200 6.082707 AGAGAGGGGAACTTTAGTCAGTAAA 58.917 40.000 0.00 0.00 0.00 2.01
200 201 5.652324 AGAGAGGGGAACTTTAGTCAGTAA 58.348 41.667 0.00 0.00 0.00 2.24
201 202 5.015391 AGAGAGAGGGGAACTTTAGTCAGTA 59.985 44.000 0.00 0.00 0.00 2.74
202 203 4.090819 GAGAGAGGGGAACTTTAGTCAGT 58.909 47.826 0.00 0.00 0.00 3.41
203 204 4.349365 AGAGAGAGGGGAACTTTAGTCAG 58.651 47.826 0.00 0.00 0.00 3.51
204 205 4.345854 GAGAGAGAGGGGAACTTTAGTCA 58.654 47.826 0.00 0.00 0.00 3.41
205 206 3.702548 GGAGAGAGAGGGGAACTTTAGTC 59.297 52.174 0.00 0.00 0.00 2.59
206 207 3.338519 AGGAGAGAGAGGGGAACTTTAGT 59.661 47.826 0.00 0.00 0.00 2.24
207 208 3.958147 GAGGAGAGAGAGGGGAACTTTAG 59.042 52.174 0.00 0.00 0.00 1.85
208 209 3.598782 AGAGGAGAGAGAGGGGAACTTTA 59.401 47.826 0.00 0.00 0.00 1.85
209 210 2.385417 AGAGGAGAGAGAGGGGAACTTT 59.615 50.000 0.00 0.00 0.00 2.66
210 211 2.007636 AGAGGAGAGAGAGGGGAACTT 58.992 52.381 0.00 0.00 0.00 2.66
211 212 1.693799 AGAGGAGAGAGAGGGGAACT 58.306 55.000 0.00 0.00 0.00 3.01
212 213 3.673543 TTAGAGGAGAGAGAGGGGAAC 57.326 52.381 0.00 0.00 0.00 3.62
213 214 4.233053 TCAATTAGAGGAGAGAGAGGGGAA 59.767 45.833 0.00 0.00 0.00 3.97
214 215 3.794399 TCAATTAGAGGAGAGAGAGGGGA 59.206 47.826 0.00 0.00 0.00 4.81
215 216 4.191804 TCAATTAGAGGAGAGAGAGGGG 57.808 50.000 0.00 0.00 0.00 4.79
216 217 5.147032 ACATCAATTAGAGGAGAGAGAGGG 58.853 45.833 0.00 0.00 0.00 4.30
217 218 6.514947 CAACATCAATTAGAGGAGAGAGAGG 58.485 44.000 0.00 0.00 0.00 3.69
218 219 5.984926 GCAACATCAATTAGAGGAGAGAGAG 59.015 44.000 0.00 0.00 0.00 3.20
219 220 5.423290 TGCAACATCAATTAGAGGAGAGAGA 59.577 40.000 0.00 0.00 0.00 3.10
220 221 5.523188 GTGCAACATCAATTAGAGGAGAGAG 59.477 44.000 0.00 0.00 36.32 3.20
221 222 5.046376 TGTGCAACATCAATTAGAGGAGAGA 60.046 40.000 0.00 0.00 45.67 3.10
222 223 5.181009 TGTGCAACATCAATTAGAGGAGAG 58.819 41.667 0.00 0.00 45.67 3.20
223 224 5.164620 TGTGCAACATCAATTAGAGGAGA 57.835 39.130 0.00 0.00 45.67 3.71
238 239 7.806690 TCAGTATTAAATGTCTCTTGTGCAAC 58.193 34.615 0.00 0.00 37.35 4.17
239 240 7.877612 TCTCAGTATTAAATGTCTCTTGTGCAA 59.122 33.333 0.00 0.00 0.00 4.08
240 241 7.331934 GTCTCAGTATTAAATGTCTCTTGTGCA 59.668 37.037 0.00 0.00 0.00 4.57
241 242 7.331934 TGTCTCAGTATTAAATGTCTCTTGTGC 59.668 37.037 0.00 0.00 0.00 4.57
242 243 8.763049 TGTCTCAGTATTAAATGTCTCTTGTG 57.237 34.615 0.00 0.00 0.00 3.33
243 244 9.950496 AATGTCTCAGTATTAAATGTCTCTTGT 57.050 29.630 0.00 0.00 0.00 3.16
293 294 4.515567 AGAAGTTTTTAGTCAGGCCGAAAG 59.484 41.667 0.00 0.00 0.00 2.62
294 295 4.457466 AGAAGTTTTTAGTCAGGCCGAAA 58.543 39.130 0.00 0.00 0.00 3.46
295 296 4.081322 AGAAGTTTTTAGTCAGGCCGAA 57.919 40.909 0.00 0.00 0.00 4.30
296 297 3.764237 AGAAGTTTTTAGTCAGGCCGA 57.236 42.857 0.00 0.00 0.00 5.54
297 298 5.411669 ACAATAGAAGTTTTTAGTCAGGCCG 59.588 40.000 0.00 0.00 0.00 6.13
298 299 6.430000 TCACAATAGAAGTTTTTAGTCAGGCC 59.570 38.462 0.00 0.00 0.00 5.19
299 300 7.173390 AGTCACAATAGAAGTTTTTAGTCAGGC 59.827 37.037 0.00 0.00 0.00 4.85
300 301 8.608844 AGTCACAATAGAAGTTTTTAGTCAGG 57.391 34.615 0.00 0.00 0.00 3.86
319 320 9.829507 GGATACTCTTTAGTAGTAGTAGTCACA 57.170 37.037 0.00 0.00 41.46 3.58
320 321 9.829507 TGGATACTCTTTAGTAGTAGTAGTCAC 57.170 37.037 0.00 0.00 41.46 3.67
321 322 9.829507 GTGGATACTCTTTAGTAGTAGTAGTCA 57.170 37.037 0.00 0.00 41.46 3.41
322 323 9.829507 TGTGGATACTCTTTAGTAGTAGTAGTC 57.170 37.037 0.00 0.00 41.46 2.59
323 324 9.612066 GTGTGGATACTCTTTAGTAGTAGTAGT 57.388 37.037 0.00 0.00 41.46 2.73
324 325 9.610705 TGTGTGGATACTCTTTAGTAGTAGTAG 57.389 37.037 0.00 0.00 41.46 2.57
325 326 9.388506 GTGTGTGGATACTCTTTAGTAGTAGTA 57.611 37.037 0.00 0.00 41.46 1.82
326 327 7.338957 GGTGTGTGGATACTCTTTAGTAGTAGT 59.661 40.741 0.00 0.00 41.46 2.73
327 328 7.201803 GGGTGTGTGGATACTCTTTAGTAGTAG 60.202 44.444 0.00 0.00 41.46 2.57
328 329 6.604795 GGGTGTGTGGATACTCTTTAGTAGTA 59.395 42.308 0.00 0.00 41.46 1.82
329 330 5.421374 GGGTGTGTGGATACTCTTTAGTAGT 59.579 44.000 0.00 0.00 41.46 2.73
330 331 5.657302 AGGGTGTGTGGATACTCTTTAGTAG 59.343 44.000 0.00 0.00 41.46 2.57
331 332 5.586877 AGGGTGTGTGGATACTCTTTAGTA 58.413 41.667 0.00 0.00 42.35 1.82
332 333 4.426704 AGGGTGTGTGGATACTCTTTAGT 58.573 43.478 0.00 0.00 39.91 2.24
333 334 4.712337 AGAGGGTGTGTGGATACTCTTTAG 59.288 45.833 0.00 0.00 31.76 1.85
334 335 4.684724 AGAGGGTGTGTGGATACTCTTTA 58.315 43.478 0.00 0.00 31.76 1.85
335 336 3.521727 AGAGGGTGTGTGGATACTCTTT 58.478 45.455 0.00 0.00 31.76 2.52
336 337 3.191888 AGAGGGTGTGTGGATACTCTT 57.808 47.619 0.00 0.00 31.76 2.85
337 338 2.930109 AGAGGGTGTGTGGATACTCT 57.070 50.000 0.00 0.00 37.61 3.24
338 339 5.138276 TGTATAGAGGGTGTGTGGATACTC 58.862 45.833 0.00 0.00 37.61 2.59
339 340 5.103643 TCTGTATAGAGGGTGTGTGGATACT 60.104 44.000 0.00 0.00 37.61 2.12
340 341 5.009811 GTCTGTATAGAGGGTGTGTGGATAC 59.990 48.000 0.00 0.00 32.48 2.24
341 342 5.138276 GTCTGTATAGAGGGTGTGTGGATA 58.862 45.833 0.00 0.00 32.48 2.59
342 343 3.961408 GTCTGTATAGAGGGTGTGTGGAT 59.039 47.826 0.00 0.00 32.48 3.41
343 344 3.245479 TGTCTGTATAGAGGGTGTGTGGA 60.245 47.826 0.00 0.00 32.48 4.02
344 345 3.096852 TGTCTGTATAGAGGGTGTGTGG 58.903 50.000 0.00 0.00 32.48 4.17
345 346 5.359860 TGTATGTCTGTATAGAGGGTGTGTG 59.640 44.000 0.00 0.00 32.48 3.82
346 347 5.516044 TGTATGTCTGTATAGAGGGTGTGT 58.484 41.667 0.00 0.00 32.48 3.72
347 348 5.594725 ACTGTATGTCTGTATAGAGGGTGTG 59.405 44.000 0.00 0.00 32.48 3.82
348 349 5.767670 ACTGTATGTCTGTATAGAGGGTGT 58.232 41.667 0.00 0.00 32.48 4.16
349 350 6.073167 CGTACTGTATGTCTGTATAGAGGGTG 60.073 46.154 0.00 0.00 34.10 4.61
350 351 5.996513 CGTACTGTATGTCTGTATAGAGGGT 59.003 44.000 0.00 0.00 34.10 4.34
351 352 5.996513 ACGTACTGTATGTCTGTATAGAGGG 59.003 44.000 6.85 0.00 34.10 4.30
352 353 7.871973 ACTACGTACTGTATGTCTGTATAGAGG 59.128 40.741 15.50 0.00 34.10 3.69
353 354 8.815141 ACTACGTACTGTATGTCTGTATAGAG 57.185 38.462 15.50 8.05 34.10 2.43
462 463 3.059597 ACAGAGATTTGTTCAAGCGTTCG 60.060 43.478 0.00 0.00 0.00 3.95
506 507 9.998106 GATGTGGTGGTAGTATATCAATAAACT 57.002 33.333 0.00 0.00 30.50 2.66
508 509 8.092068 CGGATGTGGTGGTAGTATATCAATAAA 58.908 37.037 0.00 0.00 30.50 1.40
511 512 5.542635 ACGGATGTGGTGGTAGTATATCAAT 59.457 40.000 0.00 0.00 30.50 2.57
512 513 4.897076 ACGGATGTGGTGGTAGTATATCAA 59.103 41.667 0.00 0.00 30.50 2.57
514 515 4.521639 TCACGGATGTGGTGGTAGTATATC 59.478 45.833 0.00 0.00 46.42 1.63
515 516 4.476297 TCACGGATGTGGTGGTAGTATAT 58.524 43.478 0.00 0.00 46.42 0.86
516 517 3.900971 TCACGGATGTGGTGGTAGTATA 58.099 45.455 0.00 0.00 46.42 1.47
517 518 2.742348 TCACGGATGTGGTGGTAGTAT 58.258 47.619 0.00 0.00 46.42 2.12
568 586 2.415168 CGAGCTGCGAGGAATAAACAAA 59.585 45.455 0.00 0.00 44.57 2.83
623 641 1.066605 CGCGGCAGGTAGTAATGTACT 59.933 52.381 0.00 0.00 42.68 2.73
666 689 8.508062 TGTTGTTTTACTCCTACGTAACGTATA 58.492 33.333 0.00 0.00 41.53 1.47
667 690 7.367285 TGTTGTTTTACTCCTACGTAACGTAT 58.633 34.615 0.00 0.00 41.53 3.06
1160 1224 4.415332 TCTTCACGTCCTCGCCGC 62.415 66.667 0.00 0.00 41.18 6.53
1161 1225 2.202492 CTCTTCACGTCCTCGCCG 60.202 66.667 0.00 0.00 41.18 6.46
1162 1226 2.182030 CCTCTTCACGTCCTCGCC 59.818 66.667 0.00 0.00 41.18 5.54
1163 1227 2.507324 GCCTCTTCACGTCCTCGC 60.507 66.667 0.00 0.00 41.18 5.03
1164 1228 2.202492 CGCCTCTTCACGTCCTCG 60.202 66.667 0.00 0.00 43.34 4.63
1165 1229 2.182030 CCGCCTCTTCACGTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
1391 1464 1.227263 CCGCACGGGATCAACCTAG 60.227 63.158 0.00 0.00 38.47 3.02
1403 1476 0.660005 CAAACACCATTGACCGCACG 60.660 55.000 0.00 0.00 31.84 5.34
1616 1689 1.004745 CTTGTCCATGGCCTTGTAGGT 59.995 52.381 16.81 0.00 37.80 3.08
1737 1810 4.617067 CGCAGGAGAGATGTATCATGGTAC 60.617 50.000 9.31 9.31 0.00 3.34
1738 1811 3.507622 CGCAGGAGAGATGTATCATGGTA 59.492 47.826 1.23 0.00 0.00 3.25
1739 1812 2.298446 CGCAGGAGAGATGTATCATGGT 59.702 50.000 1.23 0.00 0.00 3.55
1769 1842 5.981315 CACAAGTGATTTGACATTTCTGCTT 59.019 36.000 0.00 0.00 39.21 3.91
1984 2057 7.377928 CAGAGCATAGCTAAATTAATTGTGTGC 59.622 37.037 0.39 7.41 39.88 4.57
2375 2451 4.457603 ACAGACTCAGATATCTATGCCGTC 59.542 45.833 4.54 7.70 0.00 4.79
2491 2567 0.737219 GCCATGTGAGACCAATCAGC 59.263 55.000 0.00 0.00 0.00 4.26
2561 2637 9.794653 CTGGATCGTTCGTATATTACTATATCG 57.205 37.037 0.00 0.00 0.00 2.92
2566 2642 7.164122 AGGACTGGATCGTTCGTATATTACTA 58.836 38.462 0.00 0.00 0.00 1.82
2567 2643 6.002704 AGGACTGGATCGTTCGTATATTACT 58.997 40.000 0.00 0.00 0.00 2.24
2568 2644 6.251655 AGGACTGGATCGTTCGTATATTAC 57.748 41.667 0.00 0.00 0.00 1.89
2569 2645 6.889301 AAGGACTGGATCGTTCGTATATTA 57.111 37.500 0.00 0.00 29.18 0.98
2570 2646 5.786264 AAGGACTGGATCGTTCGTATATT 57.214 39.130 0.00 0.00 29.18 1.28
2804 2880 5.123186 CCACAGCGATTAAACCAATTAGTCA 59.877 40.000 0.00 0.00 31.54 3.41
2858 2934 3.511699 CAATGAGCAGTCACTACGCTAA 58.488 45.455 0.00 0.00 36.21 3.09
3196 3281 3.873952 GTGCTGACATCTGGACCTTAATC 59.126 47.826 0.00 0.00 31.77 1.75
3274 3359 0.796312 TCGATTTCTTCCGCAGCAAC 59.204 50.000 0.00 0.00 0.00 4.17
3325 3413 3.002656 CGAGCAACCACATATGAACCATC 59.997 47.826 10.38 0.00 0.00 3.51
3386 3475 2.352651 CGGCCTCTACAATTGTGATGTG 59.647 50.000 21.42 11.09 32.27 3.21
3387 3476 2.632377 CGGCCTCTACAATTGTGATGT 58.368 47.619 21.42 0.00 34.81 3.06
3397 3486 0.543410 TGAAACCTCCGGCCTCTACA 60.543 55.000 0.00 0.00 0.00 2.74
3398 3487 0.611714 TTGAAACCTCCGGCCTCTAC 59.388 55.000 0.00 0.00 0.00 2.59
3475 3567 4.037446 GCACACTTAAACTTTGATGGGTCA 59.963 41.667 0.00 0.00 0.00 4.02
3507 3600 2.449518 TCCCTCAACCAGTGGCCA 60.450 61.111 9.78 0.00 0.00 5.36
3534 3629 1.742761 ATGCAATGAAGTAGCACGCT 58.257 45.000 0.00 0.00 41.60 5.07
3536 3631 3.662713 GCGATATGCAATGAAGTAGCACG 60.663 47.826 0.00 0.00 45.45 5.34
3578 3674 8.593945 AGGAAAAATCAGCACCAGATTAAATA 57.406 30.769 0.00 0.00 34.78 1.40
3584 3680 4.018597 AGAGAGGAAAAATCAGCACCAGAT 60.019 41.667 0.00 0.00 0.00 2.90
3662 3758 3.384668 AGCACACACATTAGCGCTATAG 58.615 45.455 19.60 15.85 0.00 1.31
3678 3774 3.696548 CACAGTGTCTCCTAGATAGCACA 59.303 47.826 0.00 7.32 0.00 4.57
3679 3775 3.490078 GCACAGTGTCTCCTAGATAGCAC 60.490 52.174 1.61 2.10 0.00 4.40
3696 3874 5.220557 TCATCAAACGTCAATATGCACAG 57.779 39.130 0.00 0.00 0.00 3.66
3704 3882 7.615582 ATCATGTAGTTCATCAAACGTCAAT 57.384 32.000 0.00 0.00 43.02 2.57
3812 3990 5.768164 GGAGGAAACTTTTAACATGGTGAGA 59.232 40.000 0.00 0.00 44.43 3.27
3831 4009 5.187967 GGTGTCTTCAAGATTAAGAGGAGGA 59.812 44.000 0.00 0.00 33.75 3.71
3929 4108 3.957497 ACAACATCTTGCTTTTGGTACCA 59.043 39.130 11.60 11.60 0.00 3.25
3975 4154 4.491942 CACGCAAACTACAATCATTAAGCG 59.508 41.667 0.00 0.00 45.96 4.68
4016 4195 3.703001 AACAGAAGACATTCCATCGGT 57.297 42.857 0.00 0.00 35.94 4.69
4017 4196 4.332819 GGTAAACAGAAGACATTCCATCGG 59.667 45.833 0.00 0.00 35.94 4.18
4018 4197 5.178797 AGGTAAACAGAAGACATTCCATCG 58.821 41.667 0.00 0.00 35.94 3.84
4019 4198 7.770897 ACATAGGTAAACAGAAGACATTCCATC 59.229 37.037 0.00 0.00 35.94 3.51
4020 4199 7.633789 ACATAGGTAAACAGAAGACATTCCAT 58.366 34.615 0.00 0.00 35.94 3.41
4021 4200 7.016153 ACATAGGTAAACAGAAGACATTCCA 57.984 36.000 0.00 0.00 35.94 3.53
4022 4201 9.099454 CTTACATAGGTAAACAGAAGACATTCC 57.901 37.037 1.17 0.00 38.92 3.01
4023 4202 8.604890 GCTTACATAGGTAAACAGAAGACATTC 58.395 37.037 1.17 0.00 38.92 2.67
4024 4203 7.277981 CGCTTACATAGGTAAACAGAAGACATT 59.722 37.037 1.17 0.00 38.92 2.71
4025 4204 6.757010 CGCTTACATAGGTAAACAGAAGACAT 59.243 38.462 1.17 0.00 38.92 3.06
4026 4205 6.097356 CGCTTACATAGGTAAACAGAAGACA 58.903 40.000 1.17 0.00 38.92 3.41
4027 4206 5.005490 GCGCTTACATAGGTAAACAGAAGAC 59.995 44.000 0.00 0.00 38.92 3.01
4028 4207 5.107133 GCGCTTACATAGGTAAACAGAAGA 58.893 41.667 0.00 0.00 38.92 2.87
4029 4208 4.270325 GGCGCTTACATAGGTAAACAGAAG 59.730 45.833 7.64 0.00 38.92 2.85
4030 4209 4.186159 GGCGCTTACATAGGTAAACAGAA 58.814 43.478 7.64 0.00 38.92 3.02
4031 4210 3.735820 CGGCGCTTACATAGGTAAACAGA 60.736 47.826 7.64 0.00 38.92 3.41
4032 4211 2.538449 CGGCGCTTACATAGGTAAACAG 59.462 50.000 7.64 0.00 38.92 3.16
4033 4212 2.542597 CGGCGCTTACATAGGTAAACA 58.457 47.619 7.64 0.00 38.92 2.83
4034 4213 1.259770 GCGGCGCTTACATAGGTAAAC 59.740 52.381 26.86 0.00 38.92 2.01
4035 4214 1.137479 AGCGGCGCTTACATAGGTAAA 59.863 47.619 31.35 0.00 38.92 2.01
4036 4215 0.748450 AGCGGCGCTTACATAGGTAA 59.252 50.000 31.35 0.00 33.89 2.85
4037 4216 2.422303 AGCGGCGCTTACATAGGTA 58.578 52.632 31.35 0.00 33.89 3.08
4038 4217 3.217231 AGCGGCGCTTACATAGGT 58.783 55.556 31.35 2.99 33.89 3.08
4047 4226 1.867233 CTACAATCATTAAGCGGCGCT 59.133 47.619 31.35 31.35 42.56 5.92
4048 4227 1.597663 ACTACAATCATTAAGCGGCGC 59.402 47.619 26.86 26.86 0.00 6.53
4049 4228 3.944422 AACTACAATCATTAAGCGGCG 57.056 42.857 0.51 0.51 0.00 6.46
4050 4229 3.791353 GCAAACTACAATCATTAAGCGGC 59.209 43.478 0.00 0.00 0.00 6.53
4051 4230 4.028383 CGCAAACTACAATCATTAAGCGG 58.972 43.478 0.00 0.00 38.02 5.52
4052 4231 4.491942 CACGCAAACTACAATCATTAAGCG 59.508 41.667 0.00 0.00 45.96 4.68
4053 4232 4.793216 CCACGCAAACTACAATCATTAAGC 59.207 41.667 0.00 0.00 0.00 3.09
4054 4233 6.176975 TCCACGCAAACTACAATCATTAAG 57.823 37.500 0.00 0.00 0.00 1.85
4055 4234 6.428465 TCTTCCACGCAAACTACAATCATTAA 59.572 34.615 0.00 0.00 0.00 1.40
4056 4235 5.935206 TCTTCCACGCAAACTACAATCATTA 59.065 36.000 0.00 0.00 0.00 1.90
4057 4236 4.759693 TCTTCCACGCAAACTACAATCATT 59.240 37.500 0.00 0.00 0.00 2.57
4058 4237 4.323417 TCTTCCACGCAAACTACAATCAT 58.677 39.130 0.00 0.00 0.00 2.45
4059 4238 3.734463 TCTTCCACGCAAACTACAATCA 58.266 40.909 0.00 0.00 0.00 2.57
4060 4239 3.746492 ACTCTTCCACGCAAACTACAATC 59.254 43.478 0.00 0.00 0.00 2.67
4061 4240 3.740115 ACTCTTCCACGCAAACTACAAT 58.260 40.909 0.00 0.00 0.00 2.71
4062 4241 3.188159 ACTCTTCCACGCAAACTACAA 57.812 42.857 0.00 0.00 0.00 2.41
4063 4242 2.869801 CAACTCTTCCACGCAAACTACA 59.130 45.455 0.00 0.00 0.00 2.74
4064 4243 2.870411 ACAACTCTTCCACGCAAACTAC 59.130 45.455 0.00 0.00 0.00 2.73
4065 4244 3.128349 GACAACTCTTCCACGCAAACTA 58.872 45.455 0.00 0.00 0.00 2.24
4066 4245 1.940613 GACAACTCTTCCACGCAAACT 59.059 47.619 0.00 0.00 0.00 2.66
4067 4246 1.668751 TGACAACTCTTCCACGCAAAC 59.331 47.619 0.00 0.00 0.00 2.93
4068 4247 2.031258 TGACAACTCTTCCACGCAAA 57.969 45.000 0.00 0.00 0.00 3.68
4069 4248 2.031258 TTGACAACTCTTCCACGCAA 57.969 45.000 0.00 0.00 0.00 4.85
4070 4249 2.254546 ATTGACAACTCTTCCACGCA 57.745 45.000 0.00 0.00 0.00 5.24
4071 4250 2.808543 AGAATTGACAACTCTTCCACGC 59.191 45.455 0.00 0.00 0.00 5.34
4072 4251 4.389077 GGTAGAATTGACAACTCTTCCACG 59.611 45.833 15.08 0.00 29.57 4.94
4073 4252 4.389077 CGGTAGAATTGACAACTCTTCCAC 59.611 45.833 18.58 6.37 29.57 4.02
4074 4253 4.282449 TCGGTAGAATTGACAACTCTTCCA 59.718 41.667 18.58 6.70 29.57 3.53
4075 4254 4.817517 TCGGTAGAATTGACAACTCTTCC 58.182 43.478 11.15 11.15 0.00 3.46
4076 4255 5.292101 CCATCGGTAGAATTGACAACTCTTC 59.708 44.000 4.23 0.00 0.00 2.87
4077 4256 5.046591 TCCATCGGTAGAATTGACAACTCTT 60.047 40.000 4.23 0.00 0.00 2.85
4078 4257 4.466370 TCCATCGGTAGAATTGACAACTCT 59.534 41.667 4.36 4.36 0.00 3.24
4079 4258 4.755411 TCCATCGGTAGAATTGACAACTC 58.245 43.478 0.00 0.00 0.00 3.01
4080 4259 4.819105 TCCATCGGTAGAATTGACAACT 57.181 40.909 0.00 0.00 0.00 3.16
4081 4260 5.354234 ACATTCCATCGGTAGAATTGACAAC 59.646 40.000 0.00 0.00 30.29 3.32
4082 4261 5.496556 ACATTCCATCGGTAGAATTGACAA 58.503 37.500 0.00 0.00 30.29 3.18
4083 4262 5.097742 ACATTCCATCGGTAGAATTGACA 57.902 39.130 0.00 0.00 30.29 3.58
4084 4263 5.584649 TGAACATTCCATCGGTAGAATTGAC 59.415 40.000 0.00 0.00 30.29 3.18
4085 4264 5.584649 GTGAACATTCCATCGGTAGAATTGA 59.415 40.000 0.00 0.00 30.29 2.57
4086 4265 5.586243 AGTGAACATTCCATCGGTAGAATTG 59.414 40.000 0.00 0.00 30.29 2.32
4087 4266 5.745227 AGTGAACATTCCATCGGTAGAATT 58.255 37.500 0.00 0.00 30.29 2.17
4088 4267 5.359194 AGTGAACATTCCATCGGTAGAAT 57.641 39.130 0.00 0.00 32.95 2.40
4089 4268 4.819105 AGTGAACATTCCATCGGTAGAA 57.181 40.909 0.00 0.00 0.00 2.10
4090 4269 5.925506 TTAGTGAACATTCCATCGGTAGA 57.074 39.130 0.00 0.00 0.00 2.59
4091 4270 6.978343 TTTTAGTGAACATTCCATCGGTAG 57.022 37.500 0.00 0.00 0.00 3.18
4092 4271 7.608376 TCATTTTTAGTGAACATTCCATCGGTA 59.392 33.333 0.00 0.00 0.00 4.02
4135 4314 6.541278 ACAATGACTGATGATCGACATGATTT 59.459 34.615 0.00 0.00 39.56 2.17
4212 4392 6.424032 AGTAGACCAAATATCAAAAGGGGAC 58.576 40.000 0.00 0.00 0.00 4.46
4253 4433 6.306987 ACAGGACACAAATGGAAAACTCTAT 58.693 36.000 0.00 0.00 0.00 1.98
4377 4557 2.499693 TCCATCGGTGCAATCTAGTCAA 59.500 45.455 0.00 0.00 0.00 3.18
4525 4705 1.884075 CGTCGGTCCTGGATGTTGGA 61.884 60.000 0.00 0.00 0.00 3.53
4645 4825 1.080093 CTGCGCTTCGTTAGGGTCA 60.080 57.895 9.73 4.72 38.96 4.02
4711 4891 3.965026 CTCCTGAGCACTCCCCGGA 62.965 68.421 0.73 0.00 0.00 5.14
4762 4942 1.264045 TGTGATCATCGGCTCCACCA 61.264 55.000 0.00 0.00 39.03 4.17
4789 4969 3.083997 GTCACCCCATCGAGGCCT 61.084 66.667 3.86 3.86 35.39 5.19
4807 4987 2.853290 AACGAGCGAGTTCACCCGT 61.853 57.895 0.00 0.00 0.00 5.28
4856 5036 1.154016 CGGCTCGTCGTCAACTGAT 60.154 57.895 0.00 0.00 0.00 2.90
4922 5103 4.282703 ACAACTGATCACTACCCTAAACGT 59.717 41.667 0.00 0.00 0.00 3.99
4937 5118 6.484364 ACAATTTTCCCTGAAACAACTGAT 57.516 33.333 0.00 0.00 30.83 2.90
5088 5270 1.274596 CGACACCCGAAAATACGAGG 58.725 55.000 0.00 0.00 41.76 4.63
5093 5275 0.527113 TCGAGCGACACCCGAAAATA 59.473 50.000 0.00 0.00 41.76 1.40
5146 5329 2.156917 TGAAACAGAAGGCATGCTCTG 58.843 47.619 26.84 26.84 43.90 3.35
5206 5403 2.183811 CCGTGCTCTGCTCAGGAG 59.816 66.667 0.00 0.00 0.00 3.69
5297 5685 4.555511 GCCTTCTGTCAACAAAAGCTACAG 60.556 45.833 4.48 4.48 39.10 2.74
5298 5686 3.315191 GCCTTCTGTCAACAAAAGCTACA 59.685 43.478 0.00 0.00 0.00 2.74
5299 5687 3.315191 TGCCTTCTGTCAACAAAAGCTAC 59.685 43.478 0.00 0.00 0.00 3.58
5300 5688 3.550820 TGCCTTCTGTCAACAAAAGCTA 58.449 40.909 0.00 0.00 0.00 3.32
5301 5689 2.378038 TGCCTTCTGTCAACAAAAGCT 58.622 42.857 0.00 0.00 0.00 3.74
5353 5756 3.685836 AACACGTGTCTAACAAAAGGC 57.314 42.857 23.61 0.00 0.00 4.35
5399 5815 1.215647 CCAGTTCCTTCCTCGTCGG 59.784 63.158 0.00 0.00 0.00 4.79
5491 5913 2.017049 GGACCAAGGATCACAAATCCG 58.983 52.381 0.00 0.00 42.87 4.18
5525 5947 2.970324 GTTTGTCCGCGCTCCACA 60.970 61.111 5.56 1.87 0.00 4.17
5526 5948 3.723348 GGTTTGTCCGCGCTCCAC 61.723 66.667 5.56 0.00 0.00 4.02
5527 5949 3.758973 TTGGTTTGTCCGCGCTCCA 62.759 57.895 5.56 0.00 39.52 3.86
5529 5951 0.454452 GATTTGGTTTGTCCGCGCTC 60.454 55.000 5.56 0.00 39.52 5.03
5530 5952 1.579429 GATTTGGTTTGTCCGCGCT 59.421 52.632 5.56 0.00 39.52 5.92
5531 5953 1.443702 GGATTTGGTTTGTCCGCGC 60.444 57.895 0.00 0.00 39.52 6.86
5532 5954 1.154301 CGGATTTGGTTTGTCCGCG 60.154 57.895 0.00 0.00 46.90 6.46
5533 5955 4.859784 CGGATTTGGTTTGTCCGC 57.140 55.556 0.00 0.00 46.90 5.54
5535 5957 1.905637 AGACCGGATTTGGTTTGTCC 58.094 50.000 9.46 0.00 44.01 4.02
5536 5958 2.621526 ACAAGACCGGATTTGGTTTGTC 59.378 45.455 9.46 0.00 44.01 3.18
5537 5959 2.360801 CACAAGACCGGATTTGGTTTGT 59.639 45.455 9.46 4.87 44.01 2.83
5538 5960 2.862140 GCACAAGACCGGATTTGGTTTG 60.862 50.000 9.46 7.80 44.01 2.93
5539 5961 1.339929 GCACAAGACCGGATTTGGTTT 59.660 47.619 9.46 0.00 44.01 3.27
5540 5962 0.958822 GCACAAGACCGGATTTGGTT 59.041 50.000 9.46 0.00 44.01 3.67
5542 5964 0.523072 CTGCACAAGACCGGATTTGG 59.477 55.000 9.46 7.51 0.00 3.28
5543 5965 0.523072 CCTGCACAAGACCGGATTTG 59.477 55.000 9.46 14.71 0.00 2.32
5544 5966 0.110486 ACCTGCACAAGACCGGATTT 59.890 50.000 9.46 0.00 0.00 2.17
5545 5967 0.321653 GACCTGCACAAGACCGGATT 60.322 55.000 9.46 0.00 0.00 3.01
5546 5968 1.296715 GACCTGCACAAGACCGGAT 59.703 57.895 9.46 0.00 0.00 4.18
5547 5969 2.741092 GACCTGCACAAGACCGGA 59.259 61.111 9.46 0.00 0.00 5.14
5548 5970 2.738521 CGACCTGCACAAGACCGG 60.739 66.667 0.00 0.00 0.00 5.28
5549 5971 3.414700 GCGACCTGCACAAGACCG 61.415 66.667 0.00 0.00 45.45 4.79
5572 5994 3.372514 GCTCCATTCTCCGTTTCTCTTTC 59.627 47.826 0.00 0.00 0.00 2.62
5628 6055 4.197750 CTGGCCGAGAACTAGAACTAGTA 58.802 47.826 13.76 0.00 44.96 1.82
5713 6145 2.435938 GCTGGAAATGGTCGCGGA 60.436 61.111 6.13 0.00 0.00 5.54
5801 6239 1.727022 CTGCAAACGCAAAGCCTCG 60.727 57.895 0.00 0.00 39.39 4.63
5805 6243 3.037833 GCCCTGCAAACGCAAAGC 61.038 61.111 0.00 0.00 39.39 3.51
5930 6371 4.083862 GACTCGTCCAGCCCCACC 62.084 72.222 0.00 0.00 0.00 4.61
5931 6372 4.436998 CGACTCGTCCAGCCCCAC 62.437 72.222 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.