Multiple sequence alignment - TraesCS2B01G228000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G228000 chr2B 100.000 3350 0 0 1 3350 222002445 221999096 0.000000e+00 6187.0
1 TraesCS2B01G228000 chr2B 93.750 672 35 7 2679 3350 775129719 775130383 0.000000e+00 1002.0
2 TraesCS2B01G228000 chr2B 89.953 428 36 2 48 475 253719608 253720028 2.270000e-151 545.0
3 TraesCS2B01G228000 chr2B 88.235 442 29 7 50 475 741579951 741580385 1.070000e-139 507.0
4 TraesCS2B01G228000 chr2B 90.763 249 22 1 2445 2693 775129247 775129494 6.930000e-87 331.0
5 TraesCS2B01G228000 chr2B 94.915 59 3 0 1 59 253719597 253719655 3.560000e-15 93.5
6 TraesCS2B01G228000 chr2B 96.000 50 1 1 12 60 222002398 222002349 2.770000e-11 80.5
7 TraesCS2B01G228000 chr2B 96.000 50 1 1 48 97 222002434 222002386 2.770000e-11 80.5
8 TraesCS2B01G228000 chr2D 96.061 1955 49 11 493 2433 162891613 162889673 0.000000e+00 3158.0
9 TraesCS2B01G228000 chr2A 94.830 1973 52 12 493 2448 173518506 173516567 0.000000e+00 3033.0
10 TraesCS2B01G228000 chr2A 90.293 752 54 11 2599 3348 615703744 615703010 0.000000e+00 966.0
11 TraesCS2B01G228000 chr6B 94.150 906 47 6 2445 3350 16958266 16957367 0.000000e+00 1375.0
12 TraesCS2B01G228000 chr6B 90.293 752 54 13 2599 3348 204354649 204355383 0.000000e+00 966.0
13 TraesCS2B01G228000 chr3B 93.601 672 36 7 2679 3350 4541034 4541698 0.000000e+00 996.0
14 TraesCS2B01G228000 chr3B 90.728 755 47 12 2595 3348 117939919 117940651 0.000000e+00 985.0
15 TraesCS2B01G228000 chr3B 90.701 742 51 10 2608 3348 17282714 17281990 0.000000e+00 972.0
16 TraesCS2B01G228000 chr3B 90.783 434 37 3 2599 3030 473706746 473706314 8.060000e-161 577.0
17 TraesCS2B01G228000 chr3B 90.361 249 23 1 2445 2693 4540562 4540809 3.220000e-85 326.0
18 TraesCS2B01G228000 chr3D 90.884 724 46 11 2595 3316 576313784 576313079 0.000000e+00 953.0
19 TraesCS2B01G228000 chr3D 88.624 756 50 11 2599 3350 590169183 590168460 0.000000e+00 887.0
20 TraesCS2B01G228000 chr7B 89.692 747 50 15 2605 3350 390740240 390740960 0.000000e+00 928.0
21 TraesCS2B01G228000 chr7A 90.888 428 32 2 48 475 735858843 735858423 4.850000e-158 568.0
22 TraesCS2B01G228000 chr5D 88.315 445 34 5 48 475 294161282 294161725 4.950000e-143 518.0
23 TraesCS2B01G228000 chr1D 88.584 438 35 3 48 471 30292696 30293132 4.950000e-143 518.0
24 TraesCS2B01G228000 chr1D 74.834 151 32 6 55 201 467887575 467887723 2.790000e-06 63.9
25 TraesCS2B01G228000 chr5A 83.051 118 19 1 2449 2566 601406953 601407069 4.570000e-19 106.0
26 TraesCS2B01G228000 chr3A 87.500 72 9 0 2445 2516 505670054 505670125 2.140000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G228000 chr2B 221999096 222002445 3349 True 2116.0 6187 97.333333 1 3350 3 chr2B.!!$R1 3349
1 TraesCS2B01G228000 chr2B 775129247 775130383 1136 False 666.5 1002 92.256500 2445 3350 2 chr2B.!!$F3 905
2 TraesCS2B01G228000 chr2D 162889673 162891613 1940 True 3158.0 3158 96.061000 493 2433 1 chr2D.!!$R1 1940
3 TraesCS2B01G228000 chr2A 173516567 173518506 1939 True 3033.0 3033 94.830000 493 2448 1 chr2A.!!$R1 1955
4 TraesCS2B01G228000 chr2A 615703010 615703744 734 True 966.0 966 90.293000 2599 3348 1 chr2A.!!$R2 749
5 TraesCS2B01G228000 chr6B 16957367 16958266 899 True 1375.0 1375 94.150000 2445 3350 1 chr6B.!!$R1 905
6 TraesCS2B01G228000 chr6B 204354649 204355383 734 False 966.0 966 90.293000 2599 3348 1 chr6B.!!$F1 749
7 TraesCS2B01G228000 chr3B 117939919 117940651 732 False 985.0 985 90.728000 2595 3348 1 chr3B.!!$F1 753
8 TraesCS2B01G228000 chr3B 17281990 17282714 724 True 972.0 972 90.701000 2608 3348 1 chr3B.!!$R1 740
9 TraesCS2B01G228000 chr3B 4540562 4541698 1136 False 661.0 996 91.981000 2445 3350 2 chr3B.!!$F2 905
10 TraesCS2B01G228000 chr3D 576313079 576313784 705 True 953.0 953 90.884000 2595 3316 1 chr3D.!!$R1 721
11 TraesCS2B01G228000 chr3D 590168460 590169183 723 True 887.0 887 88.624000 2599 3350 1 chr3D.!!$R2 751
12 TraesCS2B01G228000 chr7B 390740240 390740960 720 False 928.0 928 89.692000 2605 3350 1 chr7B.!!$F1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.035056 AGCTTGGTTGAAGGATCCGG 60.035 55.0 5.98 0.0 31.56 5.14 F
396 397 0.107459 GCTCCACCTGAATCTGGGTC 60.107 60.0 10.92 0.0 32.95 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1379 1.153745 CAGGTACGAGCTCAGCACC 60.154 63.158 15.40 16.24 0.0 5.01 R
2371 2399 0.034477 CCTTTGGTAATCACGGGCCT 60.034 55.000 0.84 0.00 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.268687 GTGACGAACCAGCCTCTG 57.731 61.111 0.00 0.00 0.00 3.35
22 23 2.029844 GTGACGAACCAGCCTCTGC 61.030 63.158 0.00 0.00 37.95 4.26
23 24 2.435059 GACGAACCAGCCTCTGCC 60.435 66.667 0.00 0.00 38.69 4.85
24 25 4.379243 ACGAACCAGCCTCTGCCG 62.379 66.667 0.00 0.00 38.69 5.69
26 27 3.706373 GAACCAGCCTCTGCCGGA 61.706 66.667 5.05 0.00 37.20 5.14
27 28 3.672295 GAACCAGCCTCTGCCGGAG 62.672 68.421 5.05 0.00 37.20 4.63
37 38 2.507452 TGCCGGAGCATGAGATGG 59.493 61.111 5.05 0.00 46.52 3.51
38 39 2.281345 GCCGGAGCATGAGATGGG 60.281 66.667 5.05 0.00 39.53 4.00
39 40 2.811514 GCCGGAGCATGAGATGGGA 61.812 63.158 5.05 0.00 39.53 4.37
40 41 1.370437 CCGGAGCATGAGATGGGAG 59.630 63.158 0.00 0.00 0.00 4.30
41 42 1.370437 CGGAGCATGAGATGGGAGG 59.630 63.158 0.00 0.00 0.00 4.30
42 43 1.072852 GGAGCATGAGATGGGAGGC 59.927 63.158 0.00 0.00 0.00 4.70
43 44 1.072852 GAGCATGAGATGGGAGGCC 59.927 63.158 0.00 0.00 0.00 5.19
44 45 2.281345 GCATGAGATGGGAGGCCG 60.281 66.667 0.00 0.00 0.00 6.13
45 46 3.112205 GCATGAGATGGGAGGCCGT 62.112 63.158 0.00 0.00 0.00 5.68
46 47 1.227764 CATGAGATGGGAGGCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
47 48 1.383109 ATGAGATGGGAGGCCGTGA 60.383 57.895 0.00 0.00 0.00 4.35
48 49 1.690219 ATGAGATGGGAGGCCGTGAC 61.690 60.000 0.00 0.00 0.00 3.67
49 50 3.083997 AGATGGGAGGCCGTGACC 61.084 66.667 0.00 0.00 0.00 4.02
50 51 3.399181 GATGGGAGGCCGTGACCA 61.399 66.667 12.08 12.08 37.41 4.02
51 52 3.391665 GATGGGAGGCCGTGACCAG 62.392 68.421 14.42 0.00 36.27 4.00
74 75 2.507452 TGCCGGAGCATGAGATGG 59.493 61.111 5.05 0.00 46.52 3.51
75 76 2.281345 GCCGGAGCATGAGATGGG 60.281 66.667 5.05 0.00 39.53 4.00
76 77 2.811514 GCCGGAGCATGAGATGGGA 61.812 63.158 5.05 0.00 39.53 4.37
77 78 1.370437 CCGGAGCATGAGATGGGAG 59.630 63.158 0.00 0.00 0.00 4.30
78 79 1.370437 CGGAGCATGAGATGGGAGG 59.630 63.158 0.00 0.00 0.00 4.30
79 80 1.072852 GGAGCATGAGATGGGAGGC 59.927 63.158 0.00 0.00 0.00 4.70
80 81 1.072852 GAGCATGAGATGGGAGGCC 59.927 63.158 0.00 0.00 0.00 5.19
81 82 2.281345 GCATGAGATGGGAGGCCG 60.281 66.667 0.00 0.00 0.00 6.13
82 83 3.112205 GCATGAGATGGGAGGCCGT 62.112 63.158 0.00 0.00 0.00 5.68
83 84 1.227764 CATGAGATGGGAGGCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
84 85 1.383109 ATGAGATGGGAGGCCGTGA 60.383 57.895 0.00 0.00 0.00 4.35
85 86 1.690219 ATGAGATGGGAGGCCGTGAC 61.690 60.000 0.00 0.00 0.00 3.67
86 87 3.083997 AGATGGGAGGCCGTGACC 61.084 66.667 0.00 0.00 0.00 4.02
87 88 3.399181 GATGGGAGGCCGTGACCA 61.399 66.667 12.08 12.08 37.41 4.02
88 89 3.391665 GATGGGAGGCCGTGACCAG 62.392 68.421 14.42 0.00 36.27 4.00
109 110 4.521075 GCTGCTGCGTGGATCTTA 57.479 55.556 0.00 0.00 0.00 2.10
110 111 2.305405 GCTGCTGCGTGGATCTTAG 58.695 57.895 0.00 0.00 0.00 2.18
111 112 1.770085 GCTGCTGCGTGGATCTTAGC 61.770 60.000 0.00 0.00 35.06 3.09
112 113 0.460811 CTGCTGCGTGGATCTTAGCA 60.461 55.000 0.00 0.00 41.61 3.49
113 114 0.740868 TGCTGCGTGGATCTTAGCAC 60.741 55.000 0.00 0.00 39.26 4.40
114 115 0.460987 GCTGCGTGGATCTTAGCACT 60.461 55.000 5.65 0.00 35.59 4.40
115 116 1.565305 CTGCGTGGATCTTAGCACTC 58.435 55.000 5.65 0.00 35.59 3.51
116 117 0.175760 TGCGTGGATCTTAGCACTCC 59.824 55.000 5.65 0.00 34.39 3.85
117 118 0.175760 GCGTGGATCTTAGCACTCCA 59.824 55.000 0.00 0.00 36.73 3.86
119 120 1.927895 GTGGATCTTAGCACTCCACG 58.072 55.000 10.88 0.00 46.74 4.94
120 121 1.476891 GTGGATCTTAGCACTCCACGA 59.523 52.381 10.88 0.00 46.74 4.35
121 122 1.476891 TGGATCTTAGCACTCCACGAC 59.523 52.381 0.00 0.00 34.17 4.34
122 123 1.202428 GGATCTTAGCACTCCACGACC 60.202 57.143 0.00 0.00 0.00 4.79
123 124 1.751924 GATCTTAGCACTCCACGACCT 59.248 52.381 0.00 0.00 0.00 3.85
124 125 1.174783 TCTTAGCACTCCACGACCTC 58.825 55.000 0.00 0.00 0.00 3.85
125 126 0.888619 CTTAGCACTCCACGACCTCA 59.111 55.000 0.00 0.00 0.00 3.86
126 127 0.888619 TTAGCACTCCACGACCTCAG 59.111 55.000 0.00 0.00 0.00 3.35
127 128 0.037734 TAGCACTCCACGACCTCAGA 59.962 55.000 0.00 0.00 0.00 3.27
128 129 0.613292 AGCACTCCACGACCTCAGAT 60.613 55.000 0.00 0.00 0.00 2.90
129 130 0.179124 GCACTCCACGACCTCAGATC 60.179 60.000 0.00 0.00 0.00 2.75
130 131 1.468985 CACTCCACGACCTCAGATCT 58.531 55.000 0.00 0.00 0.00 2.75
131 132 1.133982 CACTCCACGACCTCAGATCTG 59.866 57.143 17.07 17.07 0.00 2.90
132 133 0.743688 CTCCACGACCTCAGATCTGG 59.256 60.000 22.42 10.18 0.00 3.86
133 134 0.039764 TCCACGACCTCAGATCTGGT 59.960 55.000 22.42 13.58 39.60 4.00
134 135 0.457851 CCACGACCTCAGATCTGGTC 59.542 60.000 22.42 20.07 46.69 4.02
137 138 1.439644 GACCTCAGATCTGGTCGGC 59.560 63.158 22.42 8.63 42.51 5.54
138 139 1.000993 ACCTCAGATCTGGTCGGCT 59.999 57.895 22.42 8.71 29.18 5.52
139 140 0.616111 ACCTCAGATCTGGTCGGCTT 60.616 55.000 22.42 3.89 29.18 4.35
140 141 0.103937 CCTCAGATCTGGTCGGCTTC 59.896 60.000 22.42 0.00 0.00 3.86
141 142 0.820226 CTCAGATCTGGTCGGCTTCA 59.180 55.000 22.42 0.00 0.00 3.02
142 143 1.205655 CTCAGATCTGGTCGGCTTCAA 59.794 52.381 22.42 0.00 0.00 2.69
143 144 1.623311 TCAGATCTGGTCGGCTTCAAA 59.377 47.619 22.42 0.00 0.00 2.69
144 145 1.734465 CAGATCTGGTCGGCTTCAAAC 59.266 52.381 15.38 0.00 0.00 2.93
145 146 1.625818 AGATCTGGTCGGCTTCAAACT 59.374 47.619 0.00 0.00 0.00 2.66
146 147 1.734465 GATCTGGTCGGCTTCAAACTG 59.266 52.381 0.00 0.00 0.00 3.16
147 148 0.250295 TCTGGTCGGCTTCAAACTGG 60.250 55.000 0.00 0.00 0.00 4.00
148 149 1.228124 TGGTCGGCTTCAAACTGGG 60.228 57.895 0.00 0.00 0.00 4.45
149 150 2.626780 GGTCGGCTTCAAACTGGGC 61.627 63.158 0.00 0.00 0.00 5.36
150 151 2.282180 TCGGCTTCAAACTGGGCC 60.282 61.111 0.00 0.00 41.02 5.80
151 152 2.597217 CGGCTTCAAACTGGGCCA 60.597 61.111 5.85 5.85 44.27 5.36
152 153 1.978617 CGGCTTCAAACTGGGCCAT 60.979 57.895 6.72 0.00 44.27 4.40
153 154 1.893062 GGCTTCAAACTGGGCCATC 59.107 57.895 6.72 0.00 43.59 3.51
154 155 1.508088 GCTTCAAACTGGGCCATCG 59.492 57.895 6.72 0.00 0.00 3.84
155 156 1.937546 GCTTCAAACTGGGCCATCGG 61.938 60.000 6.72 0.00 0.00 4.18
184 185 4.416533 GCACGAGCCATCAGAGAG 57.583 61.111 0.00 0.00 33.58 3.20
185 186 1.812525 GCACGAGCCATCAGAGAGA 59.187 57.895 0.00 0.00 33.58 3.10
186 187 0.388659 GCACGAGCCATCAGAGAGAT 59.611 55.000 0.00 0.00 37.48 2.75
203 204 4.225860 TGGAACATCACCTCCGGT 57.774 55.556 0.00 0.00 35.62 5.28
212 213 2.599578 ACCTCCGGTGTGCGTACT 60.600 61.111 0.00 0.00 32.98 2.73
213 214 2.181021 CCTCCGGTGTGCGTACTC 59.819 66.667 0.00 0.50 0.00 2.59
214 215 2.202440 CTCCGGTGTGCGTACTCG 60.202 66.667 0.00 8.87 40.37 4.18
224 225 2.509336 CGTACTCGCCCAGCTTGG 60.509 66.667 0.00 0.00 37.25 3.61
225 226 2.663196 GTACTCGCCCAGCTTGGT 59.337 61.111 5.61 0.00 35.17 3.67
226 227 1.003718 GTACTCGCCCAGCTTGGTT 60.004 57.895 5.61 0.00 35.17 3.67
227 228 1.003839 TACTCGCCCAGCTTGGTTG 60.004 57.895 5.61 0.00 35.17 3.77
228 229 1.476845 TACTCGCCCAGCTTGGTTGA 61.477 55.000 5.61 3.45 35.17 3.18
229 230 1.600636 CTCGCCCAGCTTGGTTGAA 60.601 57.895 5.61 0.00 35.17 2.69
230 231 1.580845 CTCGCCCAGCTTGGTTGAAG 61.581 60.000 5.61 0.00 35.17 3.02
231 232 2.629656 CGCCCAGCTTGGTTGAAGG 61.630 63.158 5.61 0.00 35.17 3.46
232 233 1.228552 GCCCAGCTTGGTTGAAGGA 60.229 57.895 5.61 0.00 35.17 3.36
233 234 0.613012 GCCCAGCTTGGTTGAAGGAT 60.613 55.000 5.61 0.00 35.17 3.24
234 235 1.467920 CCCAGCTTGGTTGAAGGATC 58.532 55.000 0.00 0.00 35.17 3.36
235 236 1.467920 CCAGCTTGGTTGAAGGATCC 58.532 55.000 2.48 2.48 31.35 3.36
236 237 1.089920 CAGCTTGGTTGAAGGATCCG 58.910 55.000 5.98 0.00 31.56 4.18
237 238 0.035056 AGCTTGGTTGAAGGATCCGG 60.035 55.000 5.98 0.00 31.56 5.14
238 239 1.657751 GCTTGGTTGAAGGATCCGGC 61.658 60.000 5.98 2.81 31.56 6.13
239 240 1.001393 TTGGTTGAAGGATCCGGCC 60.001 57.895 5.98 6.16 0.00 6.13
240 241 2.124278 GGTTGAAGGATCCGGCCC 60.124 66.667 5.98 0.00 0.00 5.80
241 242 2.513897 GTTGAAGGATCCGGCCCG 60.514 66.667 5.98 0.00 0.00 6.13
269 270 4.323477 CGCCGTTGTGGAGGGGAA 62.323 66.667 0.00 0.00 42.30 3.97
270 271 2.355115 GCCGTTGTGGAGGGGAAT 59.645 61.111 0.00 0.00 42.00 3.01
271 272 1.304134 GCCGTTGTGGAGGGGAATT 60.304 57.895 0.00 0.00 42.00 2.17
272 273 0.898326 GCCGTTGTGGAGGGGAATTT 60.898 55.000 0.00 0.00 42.00 1.82
273 274 1.627864 CCGTTGTGGAGGGGAATTTT 58.372 50.000 0.00 0.00 42.00 1.82
274 275 1.967779 CCGTTGTGGAGGGGAATTTTT 59.032 47.619 0.00 0.00 42.00 1.94
275 276 2.288763 CCGTTGTGGAGGGGAATTTTTG 60.289 50.000 0.00 0.00 42.00 2.44
276 277 2.288763 CGTTGTGGAGGGGAATTTTTGG 60.289 50.000 0.00 0.00 0.00 3.28
277 278 2.703536 GTTGTGGAGGGGAATTTTTGGT 59.296 45.455 0.00 0.00 0.00 3.67
278 279 2.604139 TGTGGAGGGGAATTTTTGGTC 58.396 47.619 0.00 0.00 0.00 4.02
279 280 1.544246 GTGGAGGGGAATTTTTGGTCG 59.456 52.381 0.00 0.00 0.00 4.79
280 281 0.530744 GGAGGGGAATTTTTGGTCGC 59.469 55.000 0.00 0.00 0.00 5.19
281 282 1.545841 GAGGGGAATTTTTGGTCGCT 58.454 50.000 0.00 0.00 0.00 4.93
282 283 1.202348 GAGGGGAATTTTTGGTCGCTG 59.798 52.381 0.00 0.00 0.00 5.18
283 284 0.389817 GGGGAATTTTTGGTCGCTGC 60.390 55.000 0.00 0.00 0.00 5.25
284 285 0.732538 GGGAATTTTTGGTCGCTGCG 60.733 55.000 17.25 17.25 0.00 5.18
285 286 0.239879 GGAATTTTTGGTCGCTGCGA 59.760 50.000 22.24 22.24 0.00 5.10
294 295 2.202260 TCGCTGCGACTTCGTACG 60.202 61.111 22.24 9.53 42.22 3.67
295 296 2.501222 CGCTGCGACTTCGTACGT 60.501 61.111 18.66 0.00 42.22 3.57
296 297 1.225827 CGCTGCGACTTCGTACGTA 60.226 57.895 18.66 4.53 42.22 3.57
297 298 0.588233 CGCTGCGACTTCGTACGTAT 60.588 55.000 18.66 1.51 42.22 3.06
298 299 0.838229 GCTGCGACTTCGTACGTATG 59.162 55.000 16.05 8.56 42.22 2.39
299 300 1.463805 CTGCGACTTCGTACGTATGG 58.536 55.000 16.05 6.58 42.22 2.74
300 301 0.804364 TGCGACTTCGTACGTATGGT 59.196 50.000 16.05 9.66 42.22 3.55
301 302 2.006169 TGCGACTTCGTACGTATGGTA 58.994 47.619 16.05 3.10 42.22 3.25
302 303 2.613595 TGCGACTTCGTACGTATGGTAT 59.386 45.455 16.05 0.55 42.22 2.73
303 304 3.065233 TGCGACTTCGTACGTATGGTATT 59.935 43.478 16.05 0.00 42.22 1.89
304 305 3.419922 GCGACTTCGTACGTATGGTATTG 59.580 47.826 16.05 5.67 42.22 1.90
305 306 3.970610 CGACTTCGTACGTATGGTATTGG 59.029 47.826 16.05 0.00 32.74 3.16
306 307 4.293415 GACTTCGTACGTATGGTATTGGG 58.707 47.826 16.05 0.00 32.74 4.12
307 308 3.701040 ACTTCGTACGTATGGTATTGGGT 59.299 43.478 16.05 0.00 32.74 4.51
308 309 4.160252 ACTTCGTACGTATGGTATTGGGTT 59.840 41.667 16.05 0.00 32.74 4.11
309 310 4.734398 TCGTACGTATGGTATTGGGTTT 57.266 40.909 16.05 0.00 32.74 3.27
310 311 4.431809 TCGTACGTATGGTATTGGGTTTG 58.568 43.478 16.05 0.00 32.74 2.93
311 312 4.159321 TCGTACGTATGGTATTGGGTTTGA 59.841 41.667 16.05 0.00 32.74 2.69
312 313 4.869297 CGTACGTATGGTATTGGGTTTGAA 59.131 41.667 7.22 0.00 32.74 2.69
313 314 5.220453 CGTACGTATGGTATTGGGTTTGAAC 60.220 44.000 7.22 0.00 32.74 3.18
314 315 4.653868 ACGTATGGTATTGGGTTTGAACA 58.346 39.130 0.00 0.00 0.00 3.18
315 316 5.071370 ACGTATGGTATTGGGTTTGAACAA 58.929 37.500 0.00 0.00 0.00 2.83
316 317 5.182380 ACGTATGGTATTGGGTTTGAACAAG 59.818 40.000 0.00 0.00 0.00 3.16
317 318 5.392595 CGTATGGTATTGGGTTTGAACAAGG 60.393 44.000 0.00 0.00 0.00 3.61
318 319 4.186077 TGGTATTGGGTTTGAACAAGGA 57.814 40.909 0.00 0.00 0.00 3.36
319 320 3.892588 TGGTATTGGGTTTGAACAAGGAC 59.107 43.478 0.00 0.00 0.00 3.85
320 321 3.892588 GGTATTGGGTTTGAACAAGGACA 59.107 43.478 0.00 0.00 0.00 4.02
321 322 4.526650 GGTATTGGGTTTGAACAAGGACAT 59.473 41.667 0.00 0.00 0.00 3.06
322 323 4.871933 ATTGGGTTTGAACAAGGACATC 57.128 40.909 0.00 0.00 0.00 3.06
323 324 2.226330 TGGGTTTGAACAAGGACATCG 58.774 47.619 0.00 0.00 0.00 3.84
324 325 1.539827 GGGTTTGAACAAGGACATCGG 59.460 52.381 0.00 0.00 0.00 4.18
325 326 1.539827 GGTTTGAACAAGGACATCGGG 59.460 52.381 0.00 0.00 0.00 5.14
326 327 2.500229 GTTTGAACAAGGACATCGGGA 58.500 47.619 0.00 0.00 0.00 5.14
327 328 2.882137 GTTTGAACAAGGACATCGGGAA 59.118 45.455 0.00 0.00 0.00 3.97
328 329 2.472695 TGAACAAGGACATCGGGAAG 57.527 50.000 0.00 0.00 0.00 3.46
329 330 1.974957 TGAACAAGGACATCGGGAAGA 59.025 47.619 0.00 0.00 0.00 2.87
330 331 2.370519 TGAACAAGGACATCGGGAAGAA 59.629 45.455 0.00 0.00 0.00 2.52
331 332 3.181449 TGAACAAGGACATCGGGAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
332 333 3.721087 ACAAGGACATCGGGAAGAAAT 57.279 42.857 0.00 0.00 0.00 2.17
333 334 4.034285 ACAAGGACATCGGGAAGAAATT 57.966 40.909 0.00 0.00 0.00 1.82
334 335 5.174037 ACAAGGACATCGGGAAGAAATTA 57.826 39.130 0.00 0.00 0.00 1.40
335 336 5.566469 ACAAGGACATCGGGAAGAAATTAA 58.434 37.500 0.00 0.00 0.00 1.40
336 337 5.414765 ACAAGGACATCGGGAAGAAATTAAC 59.585 40.000 0.00 0.00 0.00 2.01
337 338 4.524053 AGGACATCGGGAAGAAATTAACC 58.476 43.478 0.00 0.00 0.00 2.85
338 339 4.227527 AGGACATCGGGAAGAAATTAACCT 59.772 41.667 0.00 0.00 0.00 3.50
339 340 4.948004 GGACATCGGGAAGAAATTAACCTT 59.052 41.667 0.00 0.00 0.00 3.50
340 341 6.069847 AGGACATCGGGAAGAAATTAACCTTA 60.070 38.462 0.00 0.00 0.00 2.69
341 342 6.600427 GGACATCGGGAAGAAATTAACCTTAA 59.400 38.462 0.00 0.00 0.00 1.85
342 343 7.201705 GGACATCGGGAAGAAATTAACCTTAAG 60.202 40.741 0.00 0.00 0.00 1.85
343 344 6.095021 ACATCGGGAAGAAATTAACCTTAAGC 59.905 38.462 0.00 0.00 0.00 3.09
344 345 4.632688 TCGGGAAGAAATTAACCTTAAGCG 59.367 41.667 0.00 0.00 0.00 4.68
345 346 4.632688 CGGGAAGAAATTAACCTTAAGCGA 59.367 41.667 0.00 0.00 0.00 4.93
346 347 5.220605 CGGGAAGAAATTAACCTTAAGCGAG 60.221 44.000 0.00 0.00 0.00 5.03
347 348 5.066117 GGGAAGAAATTAACCTTAAGCGAGG 59.934 44.000 0.00 2.75 42.75 4.63
348 349 5.066117 GGAAGAAATTAACCTTAAGCGAGGG 59.934 44.000 0.00 0.00 41.31 4.30
349 350 5.431179 AGAAATTAACCTTAAGCGAGGGA 57.569 39.130 0.00 0.00 41.31 4.20
350 351 5.429130 AGAAATTAACCTTAAGCGAGGGAG 58.571 41.667 0.00 0.00 41.31 4.30
351 352 4.838904 AATTAACCTTAAGCGAGGGAGT 57.161 40.909 0.00 0.00 41.31 3.85
352 353 4.838904 ATTAACCTTAAGCGAGGGAGTT 57.161 40.909 0.00 0.00 41.31 3.01
353 354 4.628963 TTAACCTTAAGCGAGGGAGTTT 57.371 40.909 0.00 0.00 41.31 2.66
354 355 3.503800 AACCTTAAGCGAGGGAGTTTT 57.496 42.857 0.00 0.00 41.31 2.43
355 356 3.503800 ACCTTAAGCGAGGGAGTTTTT 57.496 42.857 0.00 0.00 41.31 1.94
374 375 3.903783 GCAAGTTATGCGCCCAGA 58.096 55.556 4.18 0.00 46.87 3.86
375 376 2.408333 GCAAGTTATGCGCCCAGAT 58.592 52.632 4.18 0.00 46.87 2.90
376 377 0.308993 GCAAGTTATGCGCCCAGATC 59.691 55.000 4.18 0.00 46.87 2.75
377 378 0.583438 CAAGTTATGCGCCCAGATCG 59.417 55.000 4.18 0.00 0.00 3.69
384 385 4.899239 CGCCCAGATCGCTCCACC 62.899 72.222 0.00 0.00 0.00 4.61
385 386 3.474570 GCCCAGATCGCTCCACCT 61.475 66.667 0.00 0.00 0.00 4.00
386 387 2.503061 CCCAGATCGCTCCACCTG 59.497 66.667 0.00 0.00 0.00 4.00
387 388 2.060383 CCCAGATCGCTCCACCTGA 61.060 63.158 0.00 0.00 0.00 3.86
388 389 1.617018 CCCAGATCGCTCCACCTGAA 61.617 60.000 0.00 0.00 0.00 3.02
389 390 0.467384 CCAGATCGCTCCACCTGAAT 59.533 55.000 0.00 0.00 0.00 2.57
390 391 1.539929 CCAGATCGCTCCACCTGAATC 60.540 57.143 0.00 0.00 0.00 2.52
391 392 1.411977 CAGATCGCTCCACCTGAATCT 59.588 52.381 0.00 0.00 0.00 2.40
392 393 1.411977 AGATCGCTCCACCTGAATCTG 59.588 52.381 0.00 0.00 0.00 2.90
393 394 0.467384 ATCGCTCCACCTGAATCTGG 59.533 55.000 4.53 4.53 0.00 3.86
394 395 1.153289 CGCTCCACCTGAATCTGGG 60.153 63.158 10.92 1.53 0.00 4.45
395 396 1.903877 CGCTCCACCTGAATCTGGGT 61.904 60.000 10.92 2.16 36.07 4.51
396 397 0.107459 GCTCCACCTGAATCTGGGTC 60.107 60.000 10.92 0.00 32.95 4.46
397 398 1.279496 CTCCACCTGAATCTGGGTCA 58.721 55.000 10.92 0.00 32.95 4.02
398 399 1.842562 CTCCACCTGAATCTGGGTCAT 59.157 52.381 10.92 0.00 32.95 3.06
399 400 1.839994 TCCACCTGAATCTGGGTCATC 59.160 52.381 10.92 0.00 32.95 2.92
400 401 1.473965 CCACCTGAATCTGGGTCATCG 60.474 57.143 10.92 0.00 32.95 3.84
401 402 1.482182 CACCTGAATCTGGGTCATCGA 59.518 52.381 10.92 0.00 32.95 3.59
402 403 2.103771 CACCTGAATCTGGGTCATCGAT 59.896 50.000 10.92 0.00 32.95 3.59
403 404 2.366916 ACCTGAATCTGGGTCATCGATC 59.633 50.000 10.92 0.00 0.00 3.69
404 405 2.632028 CCTGAATCTGGGTCATCGATCT 59.368 50.000 0.00 0.00 0.00 2.75
405 406 3.070734 CCTGAATCTGGGTCATCGATCTT 59.929 47.826 0.00 0.00 0.00 2.40
406 407 4.444022 CCTGAATCTGGGTCATCGATCTTT 60.444 45.833 0.00 0.00 0.00 2.52
407 408 4.697514 TGAATCTGGGTCATCGATCTTTC 58.302 43.478 0.00 0.00 0.00 2.62
408 409 4.162131 TGAATCTGGGTCATCGATCTTTCA 59.838 41.667 0.00 0.00 0.00 2.69
409 410 4.970860 ATCTGGGTCATCGATCTTTCAT 57.029 40.909 0.00 0.00 0.00 2.57
410 411 4.327982 TCTGGGTCATCGATCTTTCATC 57.672 45.455 0.00 0.00 0.00 2.92
411 412 3.070159 TCTGGGTCATCGATCTTTCATCC 59.930 47.826 0.00 0.00 0.00 3.51
412 413 2.771372 TGGGTCATCGATCTTTCATCCA 59.229 45.455 0.00 0.00 0.00 3.41
413 414 3.199727 TGGGTCATCGATCTTTCATCCAA 59.800 43.478 0.00 0.00 0.00 3.53
414 415 4.141413 TGGGTCATCGATCTTTCATCCAAT 60.141 41.667 0.00 0.00 0.00 3.16
415 416 4.214971 GGGTCATCGATCTTTCATCCAATG 59.785 45.833 0.00 0.00 0.00 2.82
416 417 4.214971 GGTCATCGATCTTTCATCCAATGG 59.785 45.833 0.00 0.00 0.00 3.16
417 418 4.818546 GTCATCGATCTTTCATCCAATGGT 59.181 41.667 0.00 0.00 0.00 3.55
418 419 5.991606 GTCATCGATCTTTCATCCAATGGTA 59.008 40.000 0.00 0.00 0.00 3.25
419 420 5.991606 TCATCGATCTTTCATCCAATGGTAC 59.008 40.000 0.00 0.00 0.00 3.34
457 458 3.703001 TTTTTCATCTCGGGCTCTCTT 57.297 42.857 0.00 0.00 0.00 2.85
458 459 3.703001 TTTTCATCTCGGGCTCTCTTT 57.297 42.857 0.00 0.00 0.00 2.52
459 460 2.969628 TTCATCTCGGGCTCTCTTTC 57.030 50.000 0.00 0.00 0.00 2.62
460 461 2.151502 TCATCTCGGGCTCTCTTTCT 57.848 50.000 0.00 0.00 0.00 2.52
461 462 3.298686 TCATCTCGGGCTCTCTTTCTA 57.701 47.619 0.00 0.00 0.00 2.10
462 463 3.838565 TCATCTCGGGCTCTCTTTCTAT 58.161 45.455 0.00 0.00 0.00 1.98
463 464 4.219115 TCATCTCGGGCTCTCTTTCTATT 58.781 43.478 0.00 0.00 0.00 1.73
464 465 4.038522 TCATCTCGGGCTCTCTTTCTATTG 59.961 45.833 0.00 0.00 0.00 1.90
465 466 3.366396 TCTCGGGCTCTCTTTCTATTGT 58.634 45.455 0.00 0.00 0.00 2.71
466 467 4.533815 TCTCGGGCTCTCTTTCTATTGTA 58.466 43.478 0.00 0.00 0.00 2.41
467 468 4.580995 TCTCGGGCTCTCTTTCTATTGTAG 59.419 45.833 0.00 0.00 0.00 2.74
468 469 4.279145 TCGGGCTCTCTTTCTATTGTAGT 58.721 43.478 0.00 0.00 0.00 2.73
469 470 4.338682 TCGGGCTCTCTTTCTATTGTAGTC 59.661 45.833 0.00 0.00 0.00 2.59
470 471 4.612943 GGGCTCTCTTTCTATTGTAGTCG 58.387 47.826 0.00 0.00 0.00 4.18
471 472 4.045783 GGCTCTCTTTCTATTGTAGTCGC 58.954 47.826 0.00 0.00 0.00 5.19
472 473 4.202070 GGCTCTCTTTCTATTGTAGTCGCT 60.202 45.833 0.00 0.00 0.00 4.93
473 474 4.973663 GCTCTCTTTCTATTGTAGTCGCTC 59.026 45.833 0.00 0.00 0.00 5.03
474 475 5.502153 TCTCTTTCTATTGTAGTCGCTCC 57.498 43.478 0.00 0.00 0.00 4.70
475 476 5.194432 TCTCTTTCTATTGTAGTCGCTCCT 58.806 41.667 0.00 0.00 0.00 3.69
476 477 5.297278 TCTCTTTCTATTGTAGTCGCTCCTC 59.703 44.000 0.00 0.00 0.00 3.71
477 478 3.965292 TTCTATTGTAGTCGCTCCTCG 57.035 47.619 0.00 0.00 40.15 4.63
478 479 2.915349 TCTATTGTAGTCGCTCCTCGT 58.085 47.619 0.00 0.00 39.67 4.18
479 480 2.871022 TCTATTGTAGTCGCTCCTCGTC 59.129 50.000 0.00 0.00 39.67 4.20
480 481 1.460504 ATTGTAGTCGCTCCTCGTCA 58.539 50.000 0.00 0.00 39.67 4.35
481 482 1.241165 TTGTAGTCGCTCCTCGTCAA 58.759 50.000 0.00 0.00 39.67 3.18
482 483 0.520404 TGTAGTCGCTCCTCGTCAAC 59.480 55.000 0.00 0.00 39.67 3.18
483 484 0.803740 GTAGTCGCTCCTCGTCAACT 59.196 55.000 0.00 0.00 39.67 3.16
484 485 0.803117 TAGTCGCTCCTCGTCAACTG 59.197 55.000 0.00 0.00 39.67 3.16
485 486 1.173444 AGTCGCTCCTCGTCAACTGT 61.173 55.000 0.00 0.00 39.67 3.55
486 487 0.520404 GTCGCTCCTCGTCAACTGTA 59.480 55.000 0.00 0.00 39.67 2.74
487 488 0.803117 TCGCTCCTCGTCAACTGTAG 59.197 55.000 0.00 0.00 39.67 2.74
488 489 0.522180 CGCTCCTCGTCAACTGTAGT 59.478 55.000 0.00 0.00 0.00 2.73
489 490 1.466024 CGCTCCTCGTCAACTGTAGTC 60.466 57.143 0.00 0.00 0.00 2.59
490 491 1.540267 GCTCCTCGTCAACTGTAGTCA 59.460 52.381 0.00 0.00 0.00 3.41
491 492 2.668834 GCTCCTCGTCAACTGTAGTCAC 60.669 54.545 0.00 0.00 0.00 3.67
537 538 2.934553 GTCTGCCTAACCATAAACGTCC 59.065 50.000 0.00 0.00 0.00 4.79
538 539 2.093341 TCTGCCTAACCATAAACGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
539 540 1.629353 TGCCTAACCATAAACGTCCCA 59.371 47.619 0.00 0.00 0.00 4.37
540 541 2.011947 GCCTAACCATAAACGTCCCAC 58.988 52.381 0.00 0.00 0.00 4.61
541 542 2.635714 CCTAACCATAAACGTCCCACC 58.364 52.381 0.00 0.00 0.00 4.61
542 543 2.027007 CCTAACCATAAACGTCCCACCA 60.027 50.000 0.00 0.00 0.00 4.17
550 551 3.556306 CGTCCCACCACCACCAGT 61.556 66.667 0.00 0.00 0.00 4.00
584 585 1.376037 GGGAAGCTCTTGTCCGGTG 60.376 63.158 0.00 0.00 34.47 4.94
642 648 4.039245 GTCTCGTCCCCTATCAAATGATCA 59.961 45.833 0.00 0.00 36.05 2.92
647 653 3.138283 TCCCCTATCAAATGATCACACCC 59.862 47.826 0.00 0.00 36.05 4.61
897 903 1.099879 CCTGCCATGCTCTACCAAGC 61.100 60.000 0.00 0.00 42.82 4.01
960 966 2.282958 TGACCGACTCTTCCCGCT 60.283 61.111 0.00 0.00 0.00 5.52
961 967 1.001764 TGACCGACTCTTCCCGCTA 60.002 57.895 0.00 0.00 0.00 4.26
962 968 0.609957 TGACCGACTCTTCCCGCTAA 60.610 55.000 0.00 0.00 0.00 3.09
984 998 2.035442 GCTCGGCCTCACCTGAAAC 61.035 63.158 0.00 0.00 35.61 2.78
994 1008 3.012518 CTCACCTGAAACTATTGGCCTG 58.987 50.000 3.32 0.00 0.00 4.85
995 1009 2.642311 TCACCTGAAACTATTGGCCTGA 59.358 45.455 3.32 0.00 0.00 3.86
1011 1031 0.826715 CTGACGTGATGATCCAGGGT 59.173 55.000 0.00 0.00 0.00 4.34
1092 1112 2.279784 GATGAGGAGAAGGCGCGG 60.280 66.667 8.83 0.00 0.00 6.46
2379 2407 2.484264 GCTTGCTATTATTAGGCCCGTG 59.516 50.000 0.00 0.00 0.00 4.94
2384 2412 5.484715 TGCTATTATTAGGCCCGTGATTAC 58.515 41.667 0.00 0.00 0.00 1.89
2474 2502 4.336993 CACCACTAGTGTTTAAACTTGGCA 59.663 41.667 21.18 0.00 41.93 4.92
2490 2518 6.524101 ACTTGGCAAGAAAAGTCACTTTAA 57.476 33.333 32.50 0.00 31.99 1.52
2505 2533 6.918022 AGTCACTTTAATGCTAAAACTTGTGC 59.082 34.615 0.00 0.00 0.00 4.57
2541 2569 0.670854 GTCAGAACTTGGCTCGGACC 60.671 60.000 0.00 0.00 33.49 4.46
2551 2579 1.611977 TGGCTCGGACCGTTCATATAG 59.388 52.381 14.79 2.77 0.00 1.31
3059 3335 7.418337 ACCAAAGTGTTCAACCTTTAAGAAT 57.582 32.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.029844 GCAGAGGCTGGTTCGTCAC 61.030 63.158 0.00 0.00 36.96 3.67
5 6 2.343758 GCAGAGGCTGGTTCGTCA 59.656 61.111 0.00 0.00 36.96 4.35
6 7 2.435059 GGCAGAGGCTGGTTCGTC 60.435 66.667 0.00 0.00 40.87 4.20
7 8 4.379243 CGGCAGAGGCTGGTTCGT 62.379 66.667 0.00 0.00 42.93 3.85
21 22 2.281345 CCCATCTCATGCTCCGGC 60.281 66.667 0.00 0.00 39.26 6.13
22 23 1.370437 CTCCCATCTCATGCTCCGG 59.630 63.158 0.00 0.00 0.00 5.14
23 24 1.370437 CCTCCCATCTCATGCTCCG 59.630 63.158 0.00 0.00 0.00 4.63
24 25 1.072852 GCCTCCCATCTCATGCTCC 59.927 63.158 0.00 0.00 0.00 4.70
25 26 1.072852 GGCCTCCCATCTCATGCTC 59.927 63.158 0.00 0.00 0.00 4.26
26 27 2.815945 CGGCCTCCCATCTCATGCT 61.816 63.158 0.00 0.00 0.00 3.79
27 28 2.281345 CGGCCTCCCATCTCATGC 60.281 66.667 0.00 0.00 0.00 4.06
28 29 1.227764 CACGGCCTCCCATCTCATG 60.228 63.158 0.00 0.00 0.00 3.07
29 30 1.383109 TCACGGCCTCCCATCTCAT 60.383 57.895 0.00 0.00 0.00 2.90
30 31 2.038813 TCACGGCCTCCCATCTCA 59.961 61.111 0.00 0.00 0.00 3.27
31 32 2.501610 GTCACGGCCTCCCATCTC 59.498 66.667 0.00 0.00 0.00 2.75
32 33 3.083997 GGTCACGGCCTCCCATCT 61.084 66.667 0.00 0.00 0.00 2.90
33 34 3.391665 CTGGTCACGGCCTCCCATC 62.392 68.421 0.00 0.00 0.00 3.51
34 35 3.402681 CTGGTCACGGCCTCCCAT 61.403 66.667 0.00 0.00 0.00 4.00
58 59 2.281345 CCCATCTCATGCTCCGGC 60.281 66.667 0.00 0.00 39.26 6.13
59 60 1.370437 CTCCCATCTCATGCTCCGG 59.630 63.158 0.00 0.00 0.00 5.14
60 61 1.370437 CCTCCCATCTCATGCTCCG 59.630 63.158 0.00 0.00 0.00 4.63
61 62 1.072852 GCCTCCCATCTCATGCTCC 59.927 63.158 0.00 0.00 0.00 4.70
62 63 1.072852 GGCCTCCCATCTCATGCTC 59.927 63.158 0.00 0.00 0.00 4.26
63 64 2.815945 CGGCCTCCCATCTCATGCT 61.816 63.158 0.00 0.00 0.00 3.79
64 65 2.281345 CGGCCTCCCATCTCATGC 60.281 66.667 0.00 0.00 0.00 4.06
65 66 1.227764 CACGGCCTCCCATCTCATG 60.228 63.158 0.00 0.00 0.00 3.07
66 67 1.383109 TCACGGCCTCCCATCTCAT 60.383 57.895 0.00 0.00 0.00 2.90
67 68 2.038813 TCACGGCCTCCCATCTCA 59.961 61.111 0.00 0.00 0.00 3.27
68 69 2.501610 GTCACGGCCTCCCATCTC 59.498 66.667 0.00 0.00 0.00 2.75
69 70 3.083997 GGTCACGGCCTCCCATCT 61.084 66.667 0.00 0.00 0.00 2.90
70 71 3.391665 CTGGTCACGGCCTCCCATC 62.392 68.421 0.00 0.00 0.00 3.51
71 72 3.402681 CTGGTCACGGCCTCCCAT 61.403 66.667 0.00 0.00 0.00 4.00
92 93 1.770085 GCTAAGATCCACGCAGCAGC 61.770 60.000 0.00 0.00 32.92 5.25
93 94 0.460811 TGCTAAGATCCACGCAGCAG 60.461 55.000 0.00 0.00 36.07 4.24
94 95 0.740868 GTGCTAAGATCCACGCAGCA 60.741 55.000 0.00 1.35 37.67 4.41
95 96 0.460987 AGTGCTAAGATCCACGCAGC 60.461 55.000 1.18 0.00 37.07 5.25
96 97 1.565305 GAGTGCTAAGATCCACGCAG 58.435 55.000 1.18 0.00 37.07 5.18
97 98 0.175760 GGAGTGCTAAGATCCACGCA 59.824 55.000 6.07 1.99 37.07 5.24
98 99 0.175760 TGGAGTGCTAAGATCCACGC 59.824 55.000 0.00 0.00 38.19 5.34
101 102 1.476891 GTCGTGGAGTGCTAAGATCCA 59.523 52.381 0.00 0.00 40.80 3.41
102 103 1.202428 GGTCGTGGAGTGCTAAGATCC 60.202 57.143 0.00 0.00 0.00 3.36
103 104 1.751924 AGGTCGTGGAGTGCTAAGATC 59.248 52.381 0.00 0.00 0.00 2.75
104 105 1.751924 GAGGTCGTGGAGTGCTAAGAT 59.248 52.381 0.00 0.00 0.00 2.40
105 106 1.174783 GAGGTCGTGGAGTGCTAAGA 58.825 55.000 0.00 0.00 0.00 2.10
106 107 0.888619 TGAGGTCGTGGAGTGCTAAG 59.111 55.000 0.00 0.00 0.00 2.18
107 108 0.888619 CTGAGGTCGTGGAGTGCTAA 59.111 55.000 0.00 0.00 0.00 3.09
108 109 0.037734 TCTGAGGTCGTGGAGTGCTA 59.962 55.000 0.00 0.00 0.00 3.49
109 110 0.613292 ATCTGAGGTCGTGGAGTGCT 60.613 55.000 0.00 0.00 0.00 4.40
110 111 0.179124 GATCTGAGGTCGTGGAGTGC 60.179 60.000 0.00 0.00 0.00 4.40
111 112 1.133982 CAGATCTGAGGTCGTGGAGTG 59.866 57.143 18.34 0.00 0.00 3.51
112 113 1.468985 CAGATCTGAGGTCGTGGAGT 58.531 55.000 18.34 0.00 0.00 3.85
113 114 0.743688 CCAGATCTGAGGTCGTGGAG 59.256 60.000 24.62 0.00 0.00 3.86
114 115 0.039764 ACCAGATCTGAGGTCGTGGA 59.960 55.000 24.62 0.00 30.79 4.02
115 116 0.457851 GACCAGATCTGAGGTCGTGG 59.542 60.000 24.62 8.05 44.23 4.94
120 121 0.616111 AAGCCGACCAGATCTGAGGT 60.616 55.000 24.62 14.46 41.83 3.85
121 122 0.103937 GAAGCCGACCAGATCTGAGG 59.896 60.000 24.62 22.12 0.00 3.86
122 123 0.820226 TGAAGCCGACCAGATCTGAG 59.180 55.000 24.62 15.81 0.00 3.35
123 124 1.266178 TTGAAGCCGACCAGATCTGA 58.734 50.000 24.62 0.00 0.00 3.27
124 125 1.734465 GTTTGAAGCCGACCAGATCTG 59.266 52.381 16.24 16.24 0.00 2.90
125 126 1.625818 AGTTTGAAGCCGACCAGATCT 59.374 47.619 0.00 0.00 0.00 2.75
126 127 1.734465 CAGTTTGAAGCCGACCAGATC 59.266 52.381 0.00 0.00 0.00 2.75
127 128 1.611673 CCAGTTTGAAGCCGACCAGAT 60.612 52.381 0.00 0.00 0.00 2.90
128 129 0.250295 CCAGTTTGAAGCCGACCAGA 60.250 55.000 0.00 0.00 0.00 3.86
129 130 1.237285 CCCAGTTTGAAGCCGACCAG 61.237 60.000 0.00 0.00 0.00 4.00
130 131 1.228124 CCCAGTTTGAAGCCGACCA 60.228 57.895 0.00 0.00 0.00 4.02
131 132 2.626780 GCCCAGTTTGAAGCCGACC 61.627 63.158 0.00 0.00 0.00 4.79
132 133 2.626780 GGCCCAGTTTGAAGCCGAC 61.627 63.158 0.00 0.00 35.30 4.79
133 134 2.282180 GGCCCAGTTTGAAGCCGA 60.282 61.111 0.00 0.00 35.30 5.54
135 136 1.893062 GATGGCCCAGTTTGAAGCC 59.107 57.895 0.00 0.00 45.96 4.35
136 137 1.508088 CGATGGCCCAGTTTGAAGC 59.492 57.895 0.00 0.00 0.00 3.86
137 138 1.937546 GCCGATGGCCCAGTTTGAAG 61.938 60.000 0.00 0.00 44.06 3.02
138 139 1.976474 GCCGATGGCCCAGTTTGAA 60.976 57.895 0.00 0.00 44.06 2.69
139 140 2.361104 GCCGATGGCCCAGTTTGA 60.361 61.111 0.00 0.00 44.06 2.69
167 168 0.388659 ATCTCTCTGATGGCTCGTGC 59.611 55.000 0.00 0.00 33.43 5.34
168 169 2.137129 CATCTCTCTGATGGCTCGTG 57.863 55.000 0.00 0.00 46.55 4.35
176 177 4.296912 AGGTGATGTTCCATCTCTCTGAT 58.703 43.478 5.87 0.00 35.40 2.90
177 178 3.703556 GAGGTGATGTTCCATCTCTCTGA 59.296 47.826 14.73 0.00 40.30 3.27
178 179 3.181467 GGAGGTGATGTTCCATCTCTCTG 60.181 52.174 18.22 0.00 42.44 3.35
179 180 3.037549 GGAGGTGATGTTCCATCTCTCT 58.962 50.000 18.22 10.14 42.44 3.10
180 181 2.223923 CGGAGGTGATGTTCCATCTCTC 60.224 54.545 14.14 14.14 42.44 3.20
181 182 1.759445 CGGAGGTGATGTTCCATCTCT 59.241 52.381 5.87 3.79 42.44 3.10
182 183 2.231215 CGGAGGTGATGTTCCATCTC 57.769 55.000 5.87 0.00 42.17 2.75
197 198 2.202440 CGAGTACGCACACCGGAG 60.202 66.667 9.46 1.26 42.52 4.63
207 208 2.509336 CCAAGCTGGGCGAGTACG 60.509 66.667 0.00 0.00 42.93 3.67
208 209 1.003718 AACCAAGCTGGGCGAGTAC 60.004 57.895 7.20 0.00 43.37 2.73
209 210 1.003839 CAACCAAGCTGGGCGAGTA 60.004 57.895 7.20 0.00 43.37 2.59
210 211 2.281761 CAACCAAGCTGGGCGAGT 60.282 61.111 7.20 0.00 43.37 4.18
211 212 1.580845 CTTCAACCAAGCTGGGCGAG 61.581 60.000 7.20 0.00 43.37 5.03
212 213 1.600636 CTTCAACCAAGCTGGGCGA 60.601 57.895 7.20 0.49 43.37 5.54
213 214 2.629656 CCTTCAACCAAGCTGGGCG 61.630 63.158 7.20 0.00 43.37 6.13
214 215 0.613012 ATCCTTCAACCAAGCTGGGC 60.613 55.000 7.20 0.00 43.37 5.36
215 216 1.467920 GATCCTTCAACCAAGCTGGG 58.532 55.000 5.25 5.25 43.37 4.45
216 217 1.467920 GGATCCTTCAACCAAGCTGG 58.532 55.000 3.84 0.00 45.02 4.85
217 218 1.089920 CGGATCCTTCAACCAAGCTG 58.910 55.000 10.75 0.00 0.00 4.24
218 219 0.035056 CCGGATCCTTCAACCAAGCT 60.035 55.000 10.75 0.00 0.00 3.74
219 220 1.657751 GCCGGATCCTTCAACCAAGC 61.658 60.000 5.05 0.00 0.00 4.01
220 221 1.032114 GGCCGGATCCTTCAACCAAG 61.032 60.000 5.05 0.00 0.00 3.61
221 222 1.001393 GGCCGGATCCTTCAACCAA 60.001 57.895 5.05 0.00 0.00 3.67
222 223 2.674754 GGCCGGATCCTTCAACCA 59.325 61.111 5.05 0.00 0.00 3.67
223 224 2.124278 GGGCCGGATCCTTCAACC 60.124 66.667 5.05 3.61 0.00 3.77
224 225 2.513897 CGGGCCGGATCCTTCAAC 60.514 66.667 20.56 0.00 0.00 3.18
252 253 3.622060 ATTCCCCTCCACAACGGCG 62.622 63.158 4.80 4.80 33.14 6.46
253 254 0.898326 AAATTCCCCTCCACAACGGC 60.898 55.000 0.00 0.00 33.14 5.68
254 255 1.627864 AAAATTCCCCTCCACAACGG 58.372 50.000 0.00 0.00 0.00 4.44
255 256 2.288763 CCAAAAATTCCCCTCCACAACG 60.289 50.000 0.00 0.00 0.00 4.10
256 257 2.703536 ACCAAAAATTCCCCTCCACAAC 59.296 45.455 0.00 0.00 0.00 3.32
257 258 2.969262 GACCAAAAATTCCCCTCCACAA 59.031 45.455 0.00 0.00 0.00 3.33
258 259 2.604139 GACCAAAAATTCCCCTCCACA 58.396 47.619 0.00 0.00 0.00 4.17
259 260 1.544246 CGACCAAAAATTCCCCTCCAC 59.456 52.381 0.00 0.00 0.00 4.02
260 261 1.917872 CGACCAAAAATTCCCCTCCA 58.082 50.000 0.00 0.00 0.00 3.86
261 262 0.530744 GCGACCAAAAATTCCCCTCC 59.469 55.000 0.00 0.00 0.00 4.30
262 263 1.202348 CAGCGACCAAAAATTCCCCTC 59.798 52.381 0.00 0.00 0.00 4.30
263 264 1.256812 CAGCGACCAAAAATTCCCCT 58.743 50.000 0.00 0.00 0.00 4.79
264 265 0.389817 GCAGCGACCAAAAATTCCCC 60.390 55.000 0.00 0.00 0.00 4.81
265 266 0.732538 CGCAGCGACCAAAAATTCCC 60.733 55.000 9.98 0.00 0.00 3.97
266 267 0.239879 TCGCAGCGACCAAAAATTCC 59.760 50.000 15.11 0.00 0.00 3.01
267 268 3.765349 TCGCAGCGACCAAAAATTC 57.235 47.368 15.11 0.00 0.00 2.17
277 278 1.625759 TACGTACGAAGTCGCAGCGA 61.626 55.000 24.41 15.11 43.93 4.93
278 279 0.588233 ATACGTACGAAGTCGCAGCG 60.588 55.000 24.41 9.06 43.93 5.18
279 280 0.838229 CATACGTACGAAGTCGCAGC 59.162 55.000 24.41 0.00 43.93 5.25
280 281 1.202110 ACCATACGTACGAAGTCGCAG 60.202 52.381 24.41 4.47 43.93 5.18
281 282 0.804364 ACCATACGTACGAAGTCGCA 59.196 50.000 24.41 0.00 43.93 5.10
282 283 2.737467 TACCATACGTACGAAGTCGC 57.263 50.000 24.41 0.00 43.93 5.19
283 284 3.970610 CCAATACCATACGTACGAAGTCG 59.029 47.826 24.41 7.38 43.93 4.18
284 285 4.202050 ACCCAATACCATACGTACGAAGTC 60.202 45.833 24.41 0.00 43.93 3.01
286 287 4.311816 ACCCAATACCATACGTACGAAG 57.688 45.455 24.41 10.64 0.00 3.79
287 288 4.734398 AACCCAATACCATACGTACGAA 57.266 40.909 24.41 0.00 0.00 3.85
288 289 4.159321 TCAAACCCAATACCATACGTACGA 59.841 41.667 24.41 6.04 0.00 3.43
289 290 4.431809 TCAAACCCAATACCATACGTACG 58.568 43.478 15.01 15.01 0.00 3.67
290 291 5.642919 TGTTCAAACCCAATACCATACGTAC 59.357 40.000 0.00 0.00 0.00 3.67
291 292 5.802465 TGTTCAAACCCAATACCATACGTA 58.198 37.500 0.00 0.00 0.00 3.57
292 293 4.653868 TGTTCAAACCCAATACCATACGT 58.346 39.130 0.00 0.00 0.00 3.57
293 294 5.392595 CCTTGTTCAAACCCAATACCATACG 60.393 44.000 0.00 0.00 0.00 3.06
294 295 5.712917 TCCTTGTTCAAACCCAATACCATAC 59.287 40.000 0.00 0.00 0.00 2.39
295 296 5.712917 GTCCTTGTTCAAACCCAATACCATA 59.287 40.000 0.00 0.00 0.00 2.74
296 297 4.526650 GTCCTTGTTCAAACCCAATACCAT 59.473 41.667 0.00 0.00 0.00 3.55
297 298 3.892588 GTCCTTGTTCAAACCCAATACCA 59.107 43.478 0.00 0.00 0.00 3.25
298 299 3.892588 TGTCCTTGTTCAAACCCAATACC 59.107 43.478 0.00 0.00 0.00 2.73
299 300 5.619086 CGATGTCCTTGTTCAAACCCAATAC 60.619 44.000 0.00 0.00 0.00 1.89
300 301 4.457603 CGATGTCCTTGTTCAAACCCAATA 59.542 41.667 0.00 0.00 0.00 1.90
301 302 3.255642 CGATGTCCTTGTTCAAACCCAAT 59.744 43.478 0.00 0.00 0.00 3.16
302 303 2.621055 CGATGTCCTTGTTCAAACCCAA 59.379 45.455 0.00 0.00 0.00 4.12
303 304 2.226330 CGATGTCCTTGTTCAAACCCA 58.774 47.619 0.00 0.00 0.00 4.51
304 305 1.539827 CCGATGTCCTTGTTCAAACCC 59.460 52.381 0.00 0.00 0.00 4.11
305 306 1.539827 CCCGATGTCCTTGTTCAAACC 59.460 52.381 0.00 0.00 0.00 3.27
306 307 2.500229 TCCCGATGTCCTTGTTCAAAC 58.500 47.619 0.00 0.00 0.00 2.93
307 308 2.940994 TCCCGATGTCCTTGTTCAAA 57.059 45.000 0.00 0.00 0.00 2.69
308 309 2.370519 TCTTCCCGATGTCCTTGTTCAA 59.629 45.455 0.00 0.00 0.00 2.69
309 310 1.974957 TCTTCCCGATGTCCTTGTTCA 59.025 47.619 0.00 0.00 0.00 3.18
310 311 2.762535 TCTTCCCGATGTCCTTGTTC 57.237 50.000 0.00 0.00 0.00 3.18
311 312 3.502123 TTTCTTCCCGATGTCCTTGTT 57.498 42.857 0.00 0.00 0.00 2.83
312 313 3.721087 ATTTCTTCCCGATGTCCTTGT 57.279 42.857 0.00 0.00 0.00 3.16
313 314 5.163652 GGTTAATTTCTTCCCGATGTCCTTG 60.164 44.000 0.00 0.00 0.00 3.61
314 315 4.948004 GGTTAATTTCTTCCCGATGTCCTT 59.052 41.667 0.00 0.00 0.00 3.36
315 316 4.227527 AGGTTAATTTCTTCCCGATGTCCT 59.772 41.667 0.00 0.00 0.00 3.85
316 317 4.524053 AGGTTAATTTCTTCCCGATGTCC 58.476 43.478 0.00 0.00 0.00 4.02
317 318 7.619964 TTAAGGTTAATTTCTTCCCGATGTC 57.380 36.000 0.00 0.00 0.00 3.06
318 319 6.095021 GCTTAAGGTTAATTTCTTCCCGATGT 59.905 38.462 4.29 0.00 0.00 3.06
319 320 6.495706 GCTTAAGGTTAATTTCTTCCCGATG 58.504 40.000 4.29 0.00 0.00 3.84
320 321 5.296035 CGCTTAAGGTTAATTTCTTCCCGAT 59.704 40.000 4.29 0.00 0.00 4.18
321 322 4.632688 CGCTTAAGGTTAATTTCTTCCCGA 59.367 41.667 4.29 0.00 0.00 5.14
322 323 4.632688 TCGCTTAAGGTTAATTTCTTCCCG 59.367 41.667 4.29 0.00 0.00 5.14
323 324 5.066117 CCTCGCTTAAGGTTAATTTCTTCCC 59.934 44.000 4.29 0.00 0.00 3.97
324 325 5.066117 CCCTCGCTTAAGGTTAATTTCTTCC 59.934 44.000 4.29 0.00 34.34 3.46
325 326 5.878669 TCCCTCGCTTAAGGTTAATTTCTTC 59.121 40.000 4.29 0.00 34.34 2.87
326 327 5.812286 TCCCTCGCTTAAGGTTAATTTCTT 58.188 37.500 4.29 0.00 34.34 2.52
327 328 5.045797 ACTCCCTCGCTTAAGGTTAATTTCT 60.046 40.000 4.29 0.00 34.34 2.52
328 329 5.183969 ACTCCCTCGCTTAAGGTTAATTTC 58.816 41.667 4.29 0.00 34.34 2.17
329 330 5.175388 ACTCCCTCGCTTAAGGTTAATTT 57.825 39.130 4.29 0.00 34.34 1.82
330 331 4.838904 ACTCCCTCGCTTAAGGTTAATT 57.161 40.909 4.29 0.00 34.34 1.40
331 332 4.838904 AACTCCCTCGCTTAAGGTTAAT 57.161 40.909 4.29 0.00 34.34 1.40
332 333 4.628963 AAACTCCCTCGCTTAAGGTTAA 57.371 40.909 4.29 0.00 34.34 2.01
333 334 4.628963 AAAACTCCCTCGCTTAAGGTTA 57.371 40.909 4.29 0.00 34.34 2.85
334 335 3.503800 AAAACTCCCTCGCTTAAGGTT 57.496 42.857 4.29 0.00 34.34 3.50
335 336 3.503800 AAAAACTCCCTCGCTTAAGGT 57.496 42.857 4.29 0.00 34.34 3.50
358 359 0.583438 CGATCTGGGCGCATAACTTG 59.417 55.000 10.83 0.00 0.00 3.16
359 360 2.992089 CGATCTGGGCGCATAACTT 58.008 52.632 10.83 0.00 0.00 2.66
360 361 4.758692 CGATCTGGGCGCATAACT 57.241 55.556 10.83 0.00 0.00 2.24
367 368 4.899239 GGTGGAGCGATCTGGGCG 62.899 72.222 0.00 0.00 35.00 6.13
368 369 3.474570 AGGTGGAGCGATCTGGGC 61.475 66.667 0.00 0.00 0.00 5.36
369 370 1.617018 TTCAGGTGGAGCGATCTGGG 61.617 60.000 0.00 0.00 0.00 4.45
370 371 0.467384 ATTCAGGTGGAGCGATCTGG 59.533 55.000 0.00 0.00 0.00 3.86
371 372 1.411977 AGATTCAGGTGGAGCGATCTG 59.588 52.381 0.00 0.00 0.00 2.90
372 373 1.411977 CAGATTCAGGTGGAGCGATCT 59.588 52.381 0.00 0.00 0.00 2.75
373 374 1.539929 CCAGATTCAGGTGGAGCGATC 60.540 57.143 0.00 0.00 35.67 3.69
374 375 0.467384 CCAGATTCAGGTGGAGCGAT 59.533 55.000 0.00 0.00 35.67 4.58
375 376 1.617018 CCCAGATTCAGGTGGAGCGA 61.617 60.000 0.00 0.00 35.67 4.93
376 377 1.153289 CCCAGATTCAGGTGGAGCG 60.153 63.158 0.00 0.00 35.67 5.03
377 378 0.107459 GACCCAGATTCAGGTGGAGC 60.107 60.000 3.34 0.00 36.17 4.70
378 379 1.279496 TGACCCAGATTCAGGTGGAG 58.721 55.000 3.34 0.00 36.17 3.86
379 380 1.839994 GATGACCCAGATTCAGGTGGA 59.160 52.381 3.34 0.00 36.17 4.02
380 381 1.473965 CGATGACCCAGATTCAGGTGG 60.474 57.143 3.34 0.00 36.17 4.61
381 382 1.482182 TCGATGACCCAGATTCAGGTG 59.518 52.381 3.34 0.00 36.17 4.00
382 383 1.866015 TCGATGACCCAGATTCAGGT 58.134 50.000 0.00 0.00 39.75 4.00
383 384 2.632028 AGATCGATGACCCAGATTCAGG 59.368 50.000 0.54 0.00 0.00 3.86
384 385 4.333913 AAGATCGATGACCCAGATTCAG 57.666 45.455 0.54 0.00 0.00 3.02
385 386 4.162131 TGAAAGATCGATGACCCAGATTCA 59.838 41.667 0.54 0.00 0.00 2.57
386 387 4.697514 TGAAAGATCGATGACCCAGATTC 58.302 43.478 0.54 0.00 0.00 2.52
387 388 4.760530 TGAAAGATCGATGACCCAGATT 57.239 40.909 0.54 0.00 0.00 2.40
388 389 4.262808 GGATGAAAGATCGATGACCCAGAT 60.263 45.833 0.54 0.00 0.00 2.90
389 390 3.070159 GGATGAAAGATCGATGACCCAGA 59.930 47.826 0.54 0.00 0.00 3.86
390 391 3.181462 TGGATGAAAGATCGATGACCCAG 60.181 47.826 0.54 0.00 0.00 4.45
391 392 2.771372 TGGATGAAAGATCGATGACCCA 59.229 45.455 0.54 0.00 0.00 4.51
392 393 3.475566 TGGATGAAAGATCGATGACCC 57.524 47.619 0.54 0.00 0.00 4.46
393 394 4.214971 CCATTGGATGAAAGATCGATGACC 59.785 45.833 0.54 0.00 0.00 4.02
394 395 4.818546 ACCATTGGATGAAAGATCGATGAC 59.181 41.667 10.37 0.00 0.00 3.06
395 396 5.039920 ACCATTGGATGAAAGATCGATGA 57.960 39.130 10.37 0.00 0.00 2.92
396 397 5.759763 TGTACCATTGGATGAAAGATCGATG 59.240 40.000 10.37 0.00 0.00 3.84
397 398 5.928976 TGTACCATTGGATGAAAGATCGAT 58.071 37.500 10.37 0.00 0.00 3.59
398 399 5.128663 TCTGTACCATTGGATGAAAGATCGA 59.871 40.000 10.37 0.00 0.00 3.59
399 400 5.359756 TCTGTACCATTGGATGAAAGATCG 58.640 41.667 10.37 0.00 0.00 3.69
400 401 7.307632 CGAATCTGTACCATTGGATGAAAGATC 60.308 40.741 10.37 4.07 0.00 2.75
401 402 6.484643 CGAATCTGTACCATTGGATGAAAGAT 59.515 38.462 10.37 6.76 0.00 2.40
402 403 5.817296 CGAATCTGTACCATTGGATGAAAGA 59.183 40.000 10.37 4.68 0.00 2.52
403 404 5.586243 ACGAATCTGTACCATTGGATGAAAG 59.414 40.000 10.37 0.00 0.00 2.62
404 405 5.496556 ACGAATCTGTACCATTGGATGAAA 58.503 37.500 10.37 0.00 0.00 2.69
405 406 5.097742 ACGAATCTGTACCATTGGATGAA 57.902 39.130 10.37 0.00 0.00 2.57
406 407 4.753516 ACGAATCTGTACCATTGGATGA 57.246 40.909 10.37 2.24 0.00 2.92
407 408 5.818136 AAACGAATCTGTACCATTGGATG 57.182 39.130 10.37 0.00 0.00 3.51
408 409 6.834168 AAAAACGAATCTGTACCATTGGAT 57.166 33.333 10.37 0.00 0.00 3.41
437 438 3.703001 AAGAGAGCCCGAGATGAAAAA 57.297 42.857 0.00 0.00 0.00 1.94
438 439 3.261897 AGAAAGAGAGCCCGAGATGAAAA 59.738 43.478 0.00 0.00 0.00 2.29
439 440 2.834549 AGAAAGAGAGCCCGAGATGAAA 59.165 45.455 0.00 0.00 0.00 2.69
440 441 2.461695 AGAAAGAGAGCCCGAGATGAA 58.538 47.619 0.00 0.00 0.00 2.57
441 442 2.151502 AGAAAGAGAGCCCGAGATGA 57.848 50.000 0.00 0.00 0.00 2.92
442 443 4.202202 ACAATAGAAAGAGAGCCCGAGATG 60.202 45.833 0.00 0.00 0.00 2.90
443 444 3.964031 ACAATAGAAAGAGAGCCCGAGAT 59.036 43.478 0.00 0.00 0.00 2.75
444 445 3.366396 ACAATAGAAAGAGAGCCCGAGA 58.634 45.455 0.00 0.00 0.00 4.04
445 446 3.810310 ACAATAGAAAGAGAGCCCGAG 57.190 47.619 0.00 0.00 0.00 4.63
446 447 4.279145 ACTACAATAGAAAGAGAGCCCGA 58.721 43.478 0.00 0.00 0.00 5.14
447 448 4.612943 GACTACAATAGAAAGAGAGCCCG 58.387 47.826 0.00 0.00 0.00 6.13
448 449 4.612943 CGACTACAATAGAAAGAGAGCCC 58.387 47.826 0.00 0.00 0.00 5.19
449 450 4.045783 GCGACTACAATAGAAAGAGAGCC 58.954 47.826 0.00 0.00 0.00 4.70
450 451 4.927422 AGCGACTACAATAGAAAGAGAGC 58.073 43.478 0.00 0.00 0.00 4.09
451 452 5.298276 AGGAGCGACTACAATAGAAAGAGAG 59.702 44.000 0.00 0.00 0.00 3.20
452 453 5.194432 AGGAGCGACTACAATAGAAAGAGA 58.806 41.667 0.00 0.00 0.00 3.10
453 454 5.508200 AGGAGCGACTACAATAGAAAGAG 57.492 43.478 0.00 0.00 0.00 2.85
454 455 4.035324 CGAGGAGCGACTACAATAGAAAGA 59.965 45.833 0.00 0.00 44.57 2.52
455 456 4.201930 ACGAGGAGCGACTACAATAGAAAG 60.202 45.833 0.00 0.00 44.57 2.62
456 457 3.693085 ACGAGGAGCGACTACAATAGAAA 59.307 43.478 0.00 0.00 44.57 2.52
457 458 3.276857 ACGAGGAGCGACTACAATAGAA 58.723 45.455 0.00 0.00 44.57 2.10
458 459 2.871022 GACGAGGAGCGACTACAATAGA 59.129 50.000 0.00 0.00 44.57 1.98
459 460 2.612672 TGACGAGGAGCGACTACAATAG 59.387 50.000 0.00 0.00 44.57 1.73
460 461 2.635714 TGACGAGGAGCGACTACAATA 58.364 47.619 0.00 0.00 44.57 1.90
461 462 1.460504 TGACGAGGAGCGACTACAAT 58.539 50.000 0.00 0.00 44.57 2.71
462 463 1.068748 GTTGACGAGGAGCGACTACAA 60.069 52.381 0.00 0.00 44.57 2.41
463 464 0.520404 GTTGACGAGGAGCGACTACA 59.480 55.000 0.00 0.00 44.57 2.74
464 465 0.803740 AGTTGACGAGGAGCGACTAC 59.196 55.000 0.00 0.00 44.57 2.73
465 466 0.803117 CAGTTGACGAGGAGCGACTA 59.197 55.000 0.00 0.00 44.57 2.59
466 467 1.173444 ACAGTTGACGAGGAGCGACT 61.173 55.000 0.00 0.00 44.57 4.18
467 468 0.520404 TACAGTTGACGAGGAGCGAC 59.480 55.000 0.00 0.00 44.57 5.19
468 469 0.803117 CTACAGTTGACGAGGAGCGA 59.197 55.000 0.00 0.00 44.57 4.93
470 471 1.540267 TGACTACAGTTGACGAGGAGC 59.460 52.381 0.00 0.00 0.00 4.70
471 472 2.814919 AGTGACTACAGTTGACGAGGAG 59.185 50.000 0.00 0.00 0.00 3.69
472 473 2.812591 GAGTGACTACAGTTGACGAGGA 59.187 50.000 0.00 0.00 0.00 3.71
473 474 2.095161 GGAGTGACTACAGTTGACGAGG 60.095 54.545 0.00 0.00 0.00 4.63
474 475 2.095161 GGGAGTGACTACAGTTGACGAG 60.095 54.545 0.00 0.00 0.00 4.18
475 476 1.884579 GGGAGTGACTACAGTTGACGA 59.115 52.381 0.00 0.00 0.00 4.20
476 477 1.067776 GGGGAGTGACTACAGTTGACG 60.068 57.143 0.00 0.00 0.00 4.35
477 478 1.067776 CGGGGAGTGACTACAGTTGAC 60.068 57.143 0.00 0.00 0.00 3.18
478 479 1.254026 CGGGGAGTGACTACAGTTGA 58.746 55.000 0.00 0.00 0.00 3.18
479 480 0.966920 ACGGGGAGTGACTACAGTTG 59.033 55.000 0.00 0.00 0.00 3.16
480 481 1.343465 CAACGGGGAGTGACTACAGTT 59.657 52.381 0.00 0.00 0.00 3.16
481 482 0.966920 CAACGGGGAGTGACTACAGT 59.033 55.000 0.00 0.00 0.00 3.55
482 483 1.254026 TCAACGGGGAGTGACTACAG 58.746 55.000 0.00 0.00 0.00 2.74
483 484 1.548719 CATCAACGGGGAGTGACTACA 59.451 52.381 0.00 0.00 0.00 2.74
484 485 1.822990 TCATCAACGGGGAGTGACTAC 59.177 52.381 0.00 0.00 0.00 2.73
485 486 2.100197 CTCATCAACGGGGAGTGACTA 58.900 52.381 0.00 0.00 0.00 2.59
486 487 0.898320 CTCATCAACGGGGAGTGACT 59.102 55.000 0.00 0.00 0.00 3.41
487 488 0.741221 GCTCATCAACGGGGAGTGAC 60.741 60.000 0.00 0.00 0.00 3.67
488 489 1.191489 TGCTCATCAACGGGGAGTGA 61.191 55.000 0.00 0.00 0.00 3.41
489 490 0.742281 CTGCTCATCAACGGGGAGTG 60.742 60.000 0.00 0.00 0.00 3.51
490 491 1.599047 CTGCTCATCAACGGGGAGT 59.401 57.895 0.00 0.00 0.00 3.85
491 492 1.153289 CCTGCTCATCAACGGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
537 538 0.984230 AGTGATACTGGTGGTGGTGG 59.016 55.000 0.00 0.00 0.00 4.61
538 539 2.099141 CAGTGATACTGGTGGTGGTG 57.901 55.000 1.08 0.00 42.35 4.17
550 551 3.497332 CTTCCCTCGGATACCAGTGATA 58.503 50.000 0.00 0.00 0.00 2.15
630 636 2.571212 GGCGGGTGTGATCATTTGATA 58.429 47.619 0.00 0.00 34.37 2.15
642 648 2.282887 GGTTGATTGGGCGGGTGT 60.283 61.111 0.00 0.00 0.00 4.16
647 653 2.671619 ACGTGGGTTGATTGGGCG 60.672 61.111 0.00 0.00 0.00 6.13
804 810 0.169009 GTCGATTTGCTGGGACTTGC 59.831 55.000 0.00 0.00 0.00 4.01
897 903 3.997021 GGGATAACTCATAACTGCGATGG 59.003 47.826 0.00 0.00 0.00 3.51
960 966 2.707849 GGTGAGGCCGAGCGAGTTA 61.708 63.158 0.00 0.00 0.00 2.24
961 967 4.070552 GGTGAGGCCGAGCGAGTT 62.071 66.667 0.00 0.00 0.00 3.01
984 998 2.602257 TCATCACGTCAGGCCAATAG 57.398 50.000 5.01 0.00 0.00 1.73
994 1008 0.537188 ACACCCTGGATCATCACGTC 59.463 55.000 0.00 0.00 0.00 4.34
995 1009 0.537188 GACACCCTGGATCATCACGT 59.463 55.000 0.00 0.00 0.00 4.49
1074 1094 2.496341 CGCGCCTTCTCCTCATCA 59.504 61.111 0.00 0.00 0.00 3.07
1263 1286 1.812922 GACCTCCTGCAGCATGTCG 60.813 63.158 8.66 0.00 39.31 4.35
1356 1379 1.153745 CAGGTACGAGCTCAGCACC 60.154 63.158 15.40 16.24 0.00 5.01
1362 1385 4.874977 GCGCCCAGGTACGAGCTC 62.875 72.222 2.73 2.73 0.00 4.09
2371 2399 0.034477 CCTTTGGTAATCACGGGCCT 60.034 55.000 0.84 0.00 0.00 5.19
2379 2407 8.433126 CGATTATATCACGAACCTTTGGTAATC 58.567 37.037 0.00 0.00 33.12 1.75
2384 2412 6.698329 TGTACGATTATATCACGAACCTTTGG 59.302 38.462 0.00 0.00 0.00 3.28
2462 2490 6.930731 AGTGACTTTTCTTGCCAAGTTTAAA 58.069 32.000 4.04 3.70 33.22 1.52
2505 2533 4.494484 TCTGACACTCGTTCAATGTATGG 58.506 43.478 0.00 0.00 0.00 2.74
2541 2569 4.214119 CAGGATTTGCACCCTATATGAACG 59.786 45.833 1.58 0.00 0.00 3.95
2610 2638 2.792674 CGCTGAGTACACAAGTTCGAAA 59.207 45.455 0.00 0.00 0.00 3.46
3030 3306 3.284617 AGGTTGAACACTTTGGTACACC 58.715 45.455 0.00 0.00 39.29 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.