Multiple sequence alignment - TraesCS2B01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G227000 chr2B 100.000 5405 0 0 1 5405 217794500 217789096 0.000000e+00 9982.0
1 TraesCS2B01G227000 chr2B 88.361 610 56 5 2409 3013 37606301 37606900 0.000000e+00 719.0
2 TraesCS2B01G227000 chr2B 82.326 662 49 34 1829 2444 37605655 37606294 3.730000e-141 512.0
3 TraesCS2B01G227000 chr2B 83.069 378 32 18 1829 2183 130060544 130060912 1.130000e-81 315.0
4 TraesCS2B01G227000 chr2B 87.692 65 5 3 4658 4719 674302641 674302577 7.510000e-09 73.1
5 TraesCS2B01G227000 chr2D 96.796 2528 54 12 2185 4710 161375887 161373385 0.000000e+00 4194.0
6 TraesCS2B01G227000 chr2D 94.895 1900 49 23 276 2150 161377768 161375892 0.000000e+00 2928.0
7 TraesCS2B01G227000 chr2D 90.830 458 28 2 4887 5342 161367739 161367294 7.750000e-168 601.0
8 TraesCS2B01G227000 chr2D 91.379 58 3 1 4832 4889 161367828 161367773 1.610000e-10 78.7
9 TraesCS2B01G227000 chr2A 92.461 1857 71 28 3592 5404 172215550 172213719 0.000000e+00 2590.0
10 TraesCS2B01G227000 chr2A 92.390 1774 61 35 398 2150 172218559 172216839 0.000000e+00 2460.0
11 TraesCS2B01G227000 chr2A 96.462 1272 35 2 2185 3446 172216834 172215563 0.000000e+00 2091.0
12 TraesCS2B01G227000 chr2A 84.058 414 48 5 5 402 172219223 172218812 3.050000e-102 383.0
13 TraesCS2B01G227000 chr2A 88.158 76 7 2 4718 4791 755694398 755694323 7.460000e-14 89.8
14 TraesCS2B01G227000 chr2A 87.342 79 6 3 4719 4793 205493806 205493728 2.680000e-13 87.9
15 TraesCS2B01G227000 chr4B 83.680 1250 86 44 1028 2247 314324190 314325351 0.000000e+00 1070.0
16 TraesCS2B01G227000 chr4B 85.362 649 38 19 1625 2247 605510407 605511024 2.140000e-173 619.0
17 TraesCS2B01G227000 chr4B 82.516 612 56 20 1873 2444 97357150 97356550 1.750000e-134 490.0
18 TraesCS2B01G227000 chr4B 86.005 443 47 5 2688 3127 97356152 97355722 1.370000e-125 460.0
19 TraesCS2B01G227000 chr4B 83.077 65 8 1 4656 4717 322674116 322674052 7.560000e-04 56.5
20 TraesCS2B01G227000 chr5D 89.804 716 56 6 2409 3119 353960862 353960159 0.000000e+00 902.0
21 TraesCS2B01G227000 chr5D 80.308 909 71 39 1587 2444 353961720 353960869 6.030000e-164 588.0
22 TraesCS2B01G227000 chr5D 84.272 426 52 11 1270 1691 515118561 515118147 8.430000e-108 401.0
23 TraesCS2B01G227000 chr5B 87.534 730 73 7 2409 3132 111271923 111272640 0.000000e+00 828.0
24 TraesCS2B01G227000 chr5B 83.804 673 54 25 1816 2444 111271255 111271916 6.030000e-164 588.0
25 TraesCS2B01G227000 chr5B 85.500 400 46 9 1295 1691 647944227 647943837 1.810000e-109 407.0
26 TraesCS2B01G227000 chr5B 85.093 161 20 2 118 278 645237400 645237244 1.560000e-35 161.0
27 TraesCS2B01G227000 chr1B 88.530 619 56 6 2409 3022 233942051 233941443 0.000000e+00 736.0
28 TraesCS2B01G227000 chr1B 81.694 661 54 33 1829 2444 233942696 233942058 6.290000e-134 488.0
29 TraesCS2B01G227000 chr1B 82.799 343 59 0 1347 1689 522061099 522060757 1.890000e-79 307.0
30 TraesCS2B01G227000 chr6B 88.387 620 55 7 2409 3022 627911535 627910927 0.000000e+00 730.0
31 TraesCS2B01G227000 chr6B 88.065 620 57 8 2409 3022 627681086 627680478 0.000000e+00 719.0
32 TraesCS2B01G227000 chr6B 80.806 620 50 32 1872 2444 627681690 627681093 6.470000e-114 422.0
33 TraesCS2B01G227000 chr6B 80.806 620 50 32 1872 2444 627912139 627911542 6.470000e-114 422.0
34 TraesCS2B01G227000 chr6B 93.617 141 9 0 2959 3099 475722573 475722433 1.530000e-50 211.0
35 TraesCS2B01G227000 chr6B 83.117 77 8 2 4718 4790 495438544 495438469 1.260000e-06 65.8
36 TraesCS2B01G227000 chr3B 92.905 296 14 5 2223 2514 748431653 748431945 1.800000e-114 424.0
37 TraesCS2B01G227000 chr3B 83.069 378 32 18 1829 2183 162678256 162678624 1.130000e-81 315.0
38 TraesCS2B01G227000 chr3B 82.540 378 34 18 1829 2183 124056235 124055867 2.450000e-78 303.0
39 TraesCS2B01G227000 chr5A 85.714 399 47 7 1295 1691 643332891 643332501 3.900000e-111 412.0
40 TraesCS2B01G227000 chr7A 90.385 312 12 9 2223 2517 59611071 59610761 1.410000e-105 394.0
41 TraesCS2B01G227000 chr7A 86.667 75 7 3 4718 4791 593466651 593466579 4.490000e-11 80.5
42 TraesCS2B01G227000 chr7A 84.483 58 6 3 4654 4708 709818757 709818814 3.000000e-03 54.7
43 TraesCS2B01G227000 chr3D 84.195 329 52 0 1361 1689 457018927 457019255 2.430000e-83 320.0
44 TraesCS2B01G227000 chr3D 86.842 76 7 2 4718 4790 12730837 12730762 1.250000e-11 82.4
45 TraesCS2B01G227000 chr1A 83.430 344 55 2 1347 1689 487741422 487741080 8.740000e-83 318.0
46 TraesCS2B01G227000 chr1A 86.486 74 8 2 4717 4790 391251786 391251857 4.490000e-11 80.5
47 TraesCS2B01G227000 chr1A 87.692 65 7 1 4656 4719 368828809 368828745 2.090000e-09 75.0
48 TraesCS2B01G227000 chr1D 83.140 344 56 2 1347 1689 388651047 388650705 4.060000e-81 313.0
49 TraesCS2B01G227000 chr1D 91.781 73 5 1 4718 4790 211683200 211683129 3.440000e-17 100.0
50 TraesCS2B01G227000 chr6A 86.301 73 6 3 4718 4790 465605141 465605209 5.810000e-10 76.8
51 TraesCS2B01G227000 chr4A 86.364 66 6 1 4656 4718 16469323 16469388 9.710000e-08 69.4
52 TraesCS2B01G227000 chr7D 83.582 67 8 1 4656 4719 634214344 634214278 5.850000e-05 60.2
53 TraesCS2B01G227000 chr4D 85.455 55 5 1 4656 4707 179860341 179860395 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G227000 chr2B 217789096 217794500 5404 True 9982.00 9982 100.00000 1 5405 1 chr2B.!!$R1 5404
1 TraesCS2B01G227000 chr2B 37605655 37606900 1245 False 615.50 719 85.34350 1829 3013 2 chr2B.!!$F2 1184
2 TraesCS2B01G227000 chr2D 161373385 161377768 4383 True 3561.00 4194 95.84550 276 4710 2 chr2D.!!$R2 4434
3 TraesCS2B01G227000 chr2D 161367294 161367828 534 True 339.85 601 91.10450 4832 5342 2 chr2D.!!$R1 510
4 TraesCS2B01G227000 chr2A 172213719 172219223 5504 True 1881.00 2590 91.34275 5 5404 4 chr2A.!!$R3 5399
5 TraesCS2B01G227000 chr4B 314324190 314325351 1161 False 1070.00 1070 83.68000 1028 2247 1 chr4B.!!$F1 1219
6 TraesCS2B01G227000 chr4B 605510407 605511024 617 False 619.00 619 85.36200 1625 2247 1 chr4B.!!$F2 622
7 TraesCS2B01G227000 chr4B 97355722 97357150 1428 True 475.00 490 84.26050 1873 3127 2 chr4B.!!$R2 1254
8 TraesCS2B01G227000 chr5D 353960159 353961720 1561 True 745.00 902 85.05600 1587 3119 2 chr5D.!!$R2 1532
9 TraesCS2B01G227000 chr5B 111271255 111272640 1385 False 708.00 828 85.66900 1816 3132 2 chr5B.!!$F1 1316
10 TraesCS2B01G227000 chr1B 233941443 233942696 1253 True 612.00 736 85.11200 1829 3022 2 chr1B.!!$R2 1193
11 TraesCS2B01G227000 chr6B 627910927 627912139 1212 True 576.00 730 84.59650 1872 3022 2 chr6B.!!$R4 1150
12 TraesCS2B01G227000 chr6B 627680478 627681690 1212 True 570.50 719 84.43550 1872 3022 2 chr6B.!!$R3 1150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 173 0.246635 ACCCATTCTCGTCGGAACTG 59.753 55.000 0.00 0.0 0.00 3.16 F
262 279 0.539669 TCCTGGAGACTGCTGAACGA 60.540 55.000 2.29 0.0 0.00 3.85 F
778 1070 0.666577 CAAGCAAGCAAGCAAGGCTC 60.667 55.000 3.19 0.0 41.66 4.70 F
1160 1472 1.001641 GGAGATGGGCAACTGCTGT 60.002 57.895 1.06 0.0 41.70 4.40 F
1220 1532 1.748500 GAAGCAGCAGAAGGAGCCC 60.749 63.158 0.00 0.0 0.00 5.19 F
2997 3546 3.144657 TGCTTGTGTCTCATGTCCATT 57.855 42.857 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1220 1532 0.037303 TCTTGCCCTTCCTCTGCTTG 59.963 55.000 0.00 0.00 0.00 4.01 R
1946 2269 0.251341 AAGGGAAGTTGCGGCAATCT 60.251 50.000 19.53 14.27 0.00 2.40 R
2596 3018 0.250858 CAGTCCACAGGCCAATCACA 60.251 55.000 5.01 0.00 0.00 3.58 R
3154 3705 2.605366 GTCTAGCGTGAAAGAGGATTGC 59.395 50.000 0.00 0.00 0.00 3.56 R
3170 3721 6.432472 AGGAAATTCCAAGAAAGCAAGTCTAG 59.568 38.462 15.21 0.00 39.61 2.43 R
4956 5554 0.390998 GAACAGGCTCTGAGCACTCC 60.391 60.000 28.95 13.06 44.75 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.727434 ACTACAGTGAAGTAATTTACCCGG 58.273 41.667 0.00 0.00 0.00 5.73
30 31 2.350498 CAGTGAAGTAATTTACCCGGCG 59.650 50.000 0.00 0.00 0.00 6.46
36 37 2.168936 AGTAATTTACCCGGCGACATCA 59.831 45.455 9.30 0.00 0.00 3.07
38 39 1.375551 ATTTACCCGGCGACATCAAC 58.624 50.000 9.30 0.00 0.00 3.18
39 40 0.674269 TTTACCCGGCGACATCAACC 60.674 55.000 9.30 0.00 0.00 3.77
60 61 1.402968 CAGATTGTTTGGAGGCCATCG 59.597 52.381 5.01 0.00 31.53 3.84
61 62 1.281867 AGATTGTTTGGAGGCCATCGA 59.718 47.619 5.01 0.00 31.53 3.59
65 66 0.734889 GTTTGGAGGCCATCGACATG 59.265 55.000 5.01 0.00 31.53 3.21
79 80 4.576216 TCGACATGATAAGAGAAGGAGC 57.424 45.455 0.00 0.00 0.00 4.70
82 83 4.037327 CGACATGATAAGAGAAGGAGCTGA 59.963 45.833 0.00 0.00 0.00 4.26
86 87 6.822676 ACATGATAAGAGAAGGAGCTGAAAAG 59.177 38.462 0.00 0.00 0.00 2.27
98 99 9.133627 GAAGGAGCTGAAAAGAAATCAAAATAC 57.866 33.333 0.00 0.00 0.00 1.89
111 128 9.071276 AGAAATCAAAATACGCTCCATCAATAT 57.929 29.630 0.00 0.00 0.00 1.28
117 134 7.630242 AAATACGCTCCATCAATATTATGGG 57.370 36.000 17.05 7.66 43.52 4.00
121 138 5.114780 CGCTCCATCAATATTATGGGAGAG 58.885 45.833 22.85 18.32 43.52 3.20
139 156 5.298026 GGGAGAGAGAGATTTTTGCATTACC 59.702 44.000 0.00 0.00 0.00 2.85
147 164 5.894807 AGATTTTTGCATTACCCATTCTCG 58.105 37.500 0.00 0.00 0.00 4.04
151 168 1.217882 GCATTACCCATTCTCGTCGG 58.782 55.000 0.00 0.00 0.00 4.79
156 173 0.246635 ACCCATTCTCGTCGGAACTG 59.753 55.000 0.00 0.00 0.00 3.16
165 182 1.406539 TCGTCGGAACTGTAATAGGGC 59.593 52.381 0.00 0.00 0.00 5.19
177 194 5.900123 ACTGTAATAGGGCTAGTCACTTCAT 59.100 40.000 0.00 0.00 0.00 2.57
178 195 6.161855 TGTAATAGGGCTAGTCACTTCATG 57.838 41.667 0.00 0.00 0.00 3.07
179 196 5.661312 TGTAATAGGGCTAGTCACTTCATGT 59.339 40.000 0.00 0.00 0.00 3.21
197 214 7.553044 ACTTCATGTCTAATTTTGGTACTAGGC 59.447 37.037 0.00 0.00 0.00 3.93
228 245 1.220749 CTGCGGCTTGGTTAGGCTA 59.779 57.895 0.00 0.00 46.82 3.93
231 248 1.166531 GCGGCTTGGTTAGGCTATGG 61.167 60.000 0.00 0.00 46.82 2.74
235 252 1.810412 GCTTGGTTAGGCTATGGTCCG 60.810 57.143 0.00 0.00 0.00 4.79
238 255 1.760613 TGGTTAGGCTATGGTCCGAAG 59.239 52.381 0.00 0.00 0.00 3.79
255 272 1.305718 AGGAGGTCCTGGAGACTGC 60.306 63.158 10.63 10.63 46.55 4.40
262 279 0.539669 TCCTGGAGACTGCTGAACGA 60.540 55.000 2.29 0.00 0.00 3.85
284 301 8.644318 ACGAGATGTAAATTGAACTATGGTAC 57.356 34.615 0.00 0.00 0.00 3.34
306 323 2.888414 GGGAGAAGAGAAGATACCCTCG 59.112 54.545 0.00 0.00 34.75 4.63
373 395 1.860326 CAAGGCCAAAAGAAAACGCAG 59.140 47.619 5.01 0.00 0.00 5.18
547 831 3.139397 TGACAGTTTAAATCCACCCACCT 59.861 43.478 0.00 0.00 0.00 4.00
552 836 4.106663 AGTTTAAATCCACCCACCTAACCA 59.893 41.667 0.00 0.00 0.00 3.67
568 852 6.949463 CACCTAACCACCCTTTTCCTTTATTA 59.051 38.462 0.00 0.00 0.00 0.98
569 853 7.618117 CACCTAACCACCCTTTTCCTTTATTAT 59.382 37.037 0.00 0.00 0.00 1.28
570 854 8.181524 ACCTAACCACCCTTTTCCTTTATTATT 58.818 33.333 0.00 0.00 0.00 1.40
571 855 9.703677 CCTAACCACCCTTTTCCTTTATTATTA 57.296 33.333 0.00 0.00 0.00 0.98
574 858 7.715482 ACCACCCTTTTCCTTTATTATTACCT 58.285 34.615 0.00 0.00 0.00 3.08
575 859 8.848830 ACCACCCTTTTCCTTTATTATTACCTA 58.151 33.333 0.00 0.00 0.00 3.08
576 860 9.703677 CCACCCTTTTCCTTTATTATTACCTAA 57.296 33.333 0.00 0.00 0.00 2.69
698 990 5.004916 ACGGAAATAAACAACAAAAACGCAG 59.995 36.000 0.00 0.00 0.00 5.18
740 1032 0.944386 GAGAAGAAGGCAACGCAACA 59.056 50.000 0.00 0.00 46.39 3.33
745 1037 3.328382 AGAAGGCAACGCAACATACTA 57.672 42.857 0.00 0.00 46.39 1.82
747 1039 2.762535 AGGCAACGCAACATACTACT 57.237 45.000 0.00 0.00 46.39 2.57
748 1040 3.880047 AGGCAACGCAACATACTACTA 57.120 42.857 0.00 0.00 46.39 1.82
749 1041 3.518590 AGGCAACGCAACATACTACTAC 58.481 45.455 0.00 0.00 46.39 2.73
750 1042 3.194968 AGGCAACGCAACATACTACTACT 59.805 43.478 0.00 0.00 46.39 2.57
751 1043 3.550678 GGCAACGCAACATACTACTACTC 59.449 47.826 0.00 0.00 0.00 2.59
752 1044 3.550678 GCAACGCAACATACTACTACTCC 59.449 47.826 0.00 0.00 0.00 3.85
753 1045 4.740268 CAACGCAACATACTACTACTCCA 58.260 43.478 0.00 0.00 0.00 3.86
754 1046 4.634184 ACGCAACATACTACTACTCCAG 57.366 45.455 0.00 0.00 0.00 3.86
759 1051 5.506649 GCAACATACTACTACTCCAGAGAGC 60.507 48.000 0.70 0.00 44.65 4.09
760 1052 5.375283 ACATACTACTACTCCAGAGAGCA 57.625 43.478 0.70 0.00 44.65 4.26
763 1055 3.020984 ACTACTACTCCAGAGAGCAAGC 58.979 50.000 0.70 0.00 44.65 4.01
764 1056 1.930251 ACTACTCCAGAGAGCAAGCA 58.070 50.000 0.70 0.00 44.65 3.91
777 1069 1.366366 CAAGCAAGCAAGCAAGGCT 59.634 52.632 3.19 0.00 45.15 4.58
778 1070 0.666577 CAAGCAAGCAAGCAAGGCTC 60.667 55.000 3.19 0.00 41.66 4.70
784 1076 2.046507 CAAGCAAGGCTCGGCTCT 60.047 61.111 13.20 2.98 40.01 4.09
787 1079 4.774503 GCAAGGCTCGGCTCTGCT 62.775 66.667 15.14 0.00 34.84 4.24
797 1090 4.567385 GCTCTGCTCGGCGAGAGG 62.567 72.222 38.56 27.42 46.91 3.69
828 1121 3.827898 CTCCGGTCTCTGTCGCCC 61.828 72.222 0.00 0.00 0.00 6.13
867 1160 2.029666 CATCTCATCGGCCCCGTC 59.970 66.667 6.61 0.00 40.74 4.79
868 1161 3.234730 ATCTCATCGGCCCCGTCC 61.235 66.667 6.61 0.00 40.74 4.79
1050 1351 3.378911 TTTTCTTGATTTGGCCCGTTC 57.621 42.857 0.00 0.00 0.00 3.95
1051 1352 1.253100 TTCTTGATTTGGCCCGTTCC 58.747 50.000 0.00 0.00 0.00 3.62
1160 1472 1.001641 GGAGATGGGCAACTGCTGT 60.002 57.895 1.06 0.00 41.70 4.40
1220 1532 1.748500 GAAGCAGCAGAAGGAGCCC 60.749 63.158 0.00 0.00 0.00 5.19
1944 2267 9.733219 CATCTTTAGCTTGGTAGTAGTAGTTAC 57.267 37.037 0.00 0.00 0.00 2.50
1945 2268 9.697990 ATCTTTAGCTTGGTAGTAGTAGTTACT 57.302 33.333 0.00 0.00 44.71 2.24
1953 2276 7.814264 TGGTAGTAGTAGTTACTAGATTGCC 57.186 40.000 0.00 0.00 43.70 4.52
2019 2353 4.395854 TGTTCACAATATCAGATGTGCCAC 59.604 41.667 1.18 0.00 45.08 5.01
2157 2500 8.855110 CCAGGTACAGTCATGATATCCTATATC 58.145 40.741 0.00 0.82 0.00 1.63
2182 2542 7.231317 TCAGCTATCACTGAAGTTTTCCATTTT 59.769 33.333 0.00 0.00 43.59 1.82
2183 2543 8.514594 CAGCTATCACTGAAGTTTTCCATTTTA 58.485 33.333 0.00 0.00 40.25 1.52
2249 2618 9.278734 GTCTTATGCTGTCTATTTTTACTTTGC 57.721 33.333 0.00 0.00 0.00 3.68
2292 2661 6.748333 AATTGTTCATGATGTGTAGGTGAG 57.252 37.500 0.00 0.00 0.00 3.51
2352 2721 5.249420 GCTCCAGAGGTGTTAAAGAGAAAT 58.751 41.667 0.00 0.00 0.00 2.17
2531 2944 5.071788 AGTGGACTGTTTTCTTATGTCCTGA 59.928 40.000 11.07 0.00 45.22 3.86
2596 3018 4.898861 TGTTTTCCTTATTTTGCCTCTGGT 59.101 37.500 0.00 0.00 0.00 4.00
2950 3499 6.855836 TGCCTTGTGTAAATTTCAGATGATC 58.144 36.000 0.00 0.00 0.00 2.92
2997 3546 3.144657 TGCTTGTGTCTCATGTCCATT 57.855 42.857 0.00 0.00 0.00 3.16
3154 3705 5.163499 GGGTATACCTCAGTCTGACTTGAAG 60.163 48.000 21.25 6.16 35.85 3.02
3170 3721 1.806542 TGAAGCAATCCTCTTTCACGC 59.193 47.619 0.00 0.00 0.00 5.34
3185 3736 3.386768 TCACGCTAGACTTGCTTTCTT 57.613 42.857 7.30 0.00 0.00 2.52
3450 4001 7.041372 TGCAACTCTTTGTTATTAGACTGGAAC 60.041 37.037 0.00 0.00 37.07 3.62
3478 4029 9.739276 TTTTGTTTCTATGTAGAATCACCATCT 57.261 29.630 11.24 0.00 41.52 2.90
3547 4098 6.214615 TCAAAGATCATACCTGGTAAACTGGA 59.785 38.462 11.17 4.58 40.42 3.86
3567 4118 5.964758 TGGATGAAATGGAATTGTTAGCAC 58.035 37.500 0.00 0.00 36.10 4.40
3602 4153 6.500751 AGAGATTGTAGAAACACCCCTCTAAA 59.499 38.462 0.00 0.00 35.68 1.85
3603 4154 7.017254 AGAGATTGTAGAAACACCCCTCTAAAA 59.983 37.037 0.00 0.00 35.68 1.52
3604 4155 7.699878 AGATTGTAGAAACACCCCTCTAAAAT 58.300 34.615 0.00 0.00 35.62 1.82
3605 4156 8.170730 AGATTGTAGAAACACCCCTCTAAAATT 58.829 33.333 0.00 0.00 33.88 1.82
3606 4157 8.721133 ATTGTAGAAACACCCCTCTAAAATTT 57.279 30.769 0.00 0.00 30.92 1.82
3607 4158 7.754851 TGTAGAAACACCCCTCTAAAATTTC 57.245 36.000 0.00 0.00 0.00 2.17
3608 4159 7.291566 TGTAGAAACACCCCTCTAAAATTTCA 58.708 34.615 0.00 0.00 0.00 2.69
3609 4160 7.780745 TGTAGAAACACCCCTCTAAAATTTCAA 59.219 33.333 0.00 0.00 0.00 2.69
3682 4233 8.821147 TTTCCTGAACTTGAAATGATCATTTG 57.179 30.769 32.89 22.17 40.77 2.32
3694 4245 7.288158 TGAAATGATCATTTGGCATTAGATGGA 59.712 33.333 32.89 3.29 40.77 3.41
4009 4560 6.016192 CCGTGATGTAGACACTGATAAGGTAT 60.016 42.308 0.00 0.00 36.29 2.73
4010 4561 6.858478 CGTGATGTAGACACTGATAAGGTATG 59.142 42.308 0.00 0.00 36.29 2.39
4011 4562 7.468768 CGTGATGTAGACACTGATAAGGTATGT 60.469 40.741 0.00 0.00 36.29 2.29
4012 4563 7.649705 GTGATGTAGACACTGATAAGGTATGTG 59.350 40.741 0.00 0.00 35.66 3.21
4013 4564 6.465439 TGTAGACACTGATAAGGTATGTGG 57.535 41.667 0.00 0.00 33.44 4.17
4014 4565 5.955959 TGTAGACACTGATAAGGTATGTGGT 59.044 40.000 0.00 0.00 33.44 4.16
4015 4566 6.439375 TGTAGACACTGATAAGGTATGTGGTT 59.561 38.462 0.00 0.00 33.44 3.67
4016 4567 7.616542 TGTAGACACTGATAAGGTATGTGGTTA 59.383 37.037 0.00 0.00 33.44 2.85
4058 4609 4.410492 AGCATGCTAGTTTTGTTTCTCG 57.590 40.909 21.21 0.00 0.00 4.04
4067 4619 5.231265 AGTTTTGTTTCTCGTCCTTTGAC 57.769 39.130 0.00 0.00 38.18 3.18
4068 4620 4.095932 AGTTTTGTTTCTCGTCCTTTGACC 59.904 41.667 0.00 0.00 38.32 4.02
4172 4725 1.755179 CAATGATGAAGGCCGGAACT 58.245 50.000 5.05 0.00 0.00 3.01
4318 4871 6.647895 GCAAGTTGTGAATTCCAGATGAAAAT 59.352 34.615 4.48 0.00 36.33 1.82
4395 4948 5.163652 GGGTATTCTGTTGCGCTCTAATTTT 60.164 40.000 9.73 0.00 0.00 1.82
4688 5241 3.417101 TCCAAAATAAGTGTCGTGGCAT 58.583 40.909 0.00 0.00 0.00 4.40
4712 5266 8.497554 CATGACAATTTTGAACTAAAACCATGG 58.502 33.333 11.19 11.19 40.80 3.66
4721 5275 5.472137 TGAACTAAAACCATGGCACTTACTC 59.528 40.000 13.04 2.26 0.00 2.59
4727 5281 0.911769 CATGGCACTTACTCCCTCCA 59.088 55.000 0.00 0.00 0.00 3.86
4731 5285 2.771943 TGGCACTTACTCCCTCCATAAG 59.228 50.000 0.00 0.00 33.08 1.73
4732 5286 2.104963 GGCACTTACTCCCTCCATAAGG 59.895 54.545 0.00 0.00 45.77 2.69
4765 5326 4.210120 AGCATTTAGATCATCGAAACGCTC 59.790 41.667 7.86 0.00 36.14 5.03
4821 5382 3.500014 TGCGACATATGCAAAATGTGTG 58.500 40.909 19.45 13.47 39.87 3.82
4822 5383 3.057666 TGCGACATATGCAAAATGTGTGT 60.058 39.130 19.45 4.71 39.87 3.72
4823 5384 3.301379 GCGACATATGCAAAATGTGTGTG 59.699 43.478 19.45 9.68 37.69 3.82
4824 5385 4.475028 CGACATATGCAAAATGTGTGTGT 58.525 39.130 19.45 3.32 37.69 3.72
4825 5386 5.626211 CGACATATGCAAAATGTGTGTGTA 58.374 37.500 19.45 0.00 37.69 2.90
4826 5387 6.257423 CGACATATGCAAAATGTGTGTGTAT 58.743 36.000 19.45 0.00 37.69 2.29
4827 5388 7.405769 CGACATATGCAAAATGTGTGTGTATA 58.594 34.615 19.45 0.00 37.69 1.47
4828 5389 7.907563 CGACATATGCAAAATGTGTGTGTATAA 59.092 33.333 19.45 0.00 37.69 0.98
4829 5390 9.566530 GACATATGCAAAATGTGTGTGTATAAA 57.433 29.630 19.45 0.00 37.69 1.40
4830 5391 9.352784 ACATATGCAAAATGTGTGTGTATAAAC 57.647 29.630 15.15 0.00 36.24 2.01
4834 5395 6.039829 TGCAAAATGTGTGTGTATAAACTGGA 59.960 34.615 0.00 0.00 0.00 3.86
4955 5553 3.625764 TGAGCACGCTGAGTTTACTTTTT 59.374 39.130 0.00 0.00 0.00 1.94
4956 5554 3.952535 AGCACGCTGAGTTTACTTTTTG 58.047 40.909 0.00 0.00 0.00 2.44
4977 5575 1.739562 GTGCTCAGAGCCTGTTCCG 60.740 63.158 20.16 0.00 41.51 4.30
5006 5604 0.390603 CCAGAAACGGTCCGTGCATA 60.391 55.000 19.67 0.00 39.99 3.14
5078 5676 4.023707 CCGGTCAAGAATCTATGGCATTTC 60.024 45.833 4.78 3.56 0.00 2.17
5079 5677 4.319046 CGGTCAAGAATCTATGGCATTTCG 60.319 45.833 4.78 0.00 0.00 3.46
5080 5678 4.023707 GGTCAAGAATCTATGGCATTTCGG 60.024 45.833 4.78 2.39 0.00 4.30
5144 5744 1.745489 GGTTGGATCTGGTCGGCAC 60.745 63.158 0.00 0.00 0.00 5.01
5145 5745 1.003839 GTTGGATCTGGTCGGCACA 60.004 57.895 0.00 0.00 0.00 4.57
5186 5786 2.870411 GGCACGGGTATTTCATACTGTC 59.130 50.000 0.00 0.00 36.04 3.51
5191 5793 3.131396 GGGTATTTCATACTGTCTGCGG 58.869 50.000 0.00 0.00 36.04 5.69
5195 5797 2.572095 TTCATACTGTCTGCGGCCGG 62.572 60.000 29.38 11.74 0.00 6.13
5342 5944 2.671963 GGGCCTTTCGTTCGCCTT 60.672 61.111 0.84 0.00 42.58 4.35
5343 5945 2.687805 GGGCCTTTCGTTCGCCTTC 61.688 63.158 0.84 0.00 42.58 3.46
5344 5946 1.671379 GGCCTTTCGTTCGCCTTCT 60.671 57.895 0.00 0.00 39.70 2.85
5354 5956 1.135228 GTTCGCCTTCTGGTCTCTCTC 60.135 57.143 0.00 0.00 35.27 3.20
5382 5999 5.049167 GTGATCTTCTTATCTGGTCAGCAG 58.951 45.833 0.00 0.00 0.00 4.24
5385 6002 3.517100 TCTTCTTATCTGGTCAGCAGCTT 59.483 43.478 0.00 0.00 0.00 3.74
5404 6021 0.534873 TCTGCTGCTGCGGTTATGTA 59.465 50.000 22.05 0.92 45.38 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.309737 CGGGTAAATTACTTCACTGTAGTGTC 59.690 42.308 11.44 0.00 45.76 3.67
11 12 2.349580 GTCGCCGGGTAAATTACTTCAC 59.650 50.000 2.18 0.00 0.00 3.18
14 15 2.766345 TGTCGCCGGGTAAATTACTT 57.234 45.000 2.18 0.00 0.00 2.24
16 17 2.553086 TGATGTCGCCGGGTAAATTAC 58.447 47.619 2.18 0.00 0.00 1.89
27 28 0.734889 CAATCTGGGTTGATGTCGCC 59.265 55.000 0.00 0.00 0.00 5.54
28 29 1.453155 ACAATCTGGGTTGATGTCGC 58.547 50.000 0.24 0.00 33.37 5.19
30 31 3.826157 TCCAAACAATCTGGGTTGATGTC 59.174 43.478 0.24 0.00 34.46 3.06
36 37 1.632589 GCCTCCAAACAATCTGGGTT 58.367 50.000 0.00 0.00 34.46 4.11
38 39 0.251742 TGGCCTCCAAACAATCTGGG 60.252 55.000 3.32 0.00 34.46 4.45
39 40 1.753073 GATGGCCTCCAAACAATCTGG 59.247 52.381 3.32 0.00 36.95 3.86
60 61 5.528043 TCAGCTCCTTCTCTTATCATGTC 57.472 43.478 0.00 0.00 0.00 3.06
61 62 5.946942 TTCAGCTCCTTCTCTTATCATGT 57.053 39.130 0.00 0.00 0.00 3.21
65 66 7.913674 TTTCTTTTCAGCTCCTTCTCTTATC 57.086 36.000 0.00 0.00 0.00 1.75
79 80 7.083858 TGGAGCGTATTTTGATTTCTTTTCAG 58.916 34.615 0.00 0.00 0.00 3.02
82 83 7.601856 TGATGGAGCGTATTTTGATTTCTTTT 58.398 30.769 0.00 0.00 0.00 2.27
86 87 9.683069 AATATTGATGGAGCGTATTTTGATTTC 57.317 29.630 0.00 0.00 0.00 2.17
98 99 5.089970 TCTCCCATAATATTGATGGAGCG 57.910 43.478 18.22 10.29 45.89 5.03
111 128 6.065976 TGCAAAAATCTCTCTCTCCCATAA 57.934 37.500 0.00 0.00 0.00 1.90
117 134 5.882557 TGGGTAATGCAAAAATCTCTCTCTC 59.117 40.000 0.00 0.00 0.00 3.20
121 138 7.105241 AGAATGGGTAATGCAAAAATCTCTC 57.895 36.000 0.00 0.00 0.00 3.20
139 156 2.933495 TACAGTTCCGACGAGAATGG 57.067 50.000 0.00 0.00 0.00 3.16
147 164 3.635836 ACTAGCCCTATTACAGTTCCGAC 59.364 47.826 0.00 0.00 0.00 4.79
151 168 5.855740 AGTGACTAGCCCTATTACAGTTC 57.144 43.478 0.00 0.00 0.00 3.01
156 173 6.041069 AGACATGAAGTGACTAGCCCTATTAC 59.959 42.308 0.00 0.00 31.00 1.89
165 182 8.553459 ACCAAAATTAGACATGAAGTGACTAG 57.447 34.615 0.00 0.00 36.65 2.57
177 194 5.183228 GCAGCCTAGTACCAAAATTAGACA 58.817 41.667 0.00 0.00 0.00 3.41
178 195 5.183228 TGCAGCCTAGTACCAAAATTAGAC 58.817 41.667 0.00 0.00 0.00 2.59
179 196 5.429681 TGCAGCCTAGTACCAAAATTAGA 57.570 39.130 0.00 0.00 0.00 2.10
211 228 0.463654 CATAGCCTAACCAAGCCGCA 60.464 55.000 0.00 0.00 0.00 5.69
214 231 1.477014 GGACCATAGCCTAACCAAGCC 60.477 57.143 0.00 0.00 0.00 4.35
228 245 0.978146 CAGGACCTCCTTCGGACCAT 60.978 60.000 0.00 0.00 46.09 3.55
231 248 1.305046 TCCAGGACCTCCTTCGGAC 60.305 63.158 0.00 0.00 46.09 4.79
235 252 1.190643 CAGTCTCCAGGACCTCCTTC 58.809 60.000 0.00 0.00 46.09 3.46
238 255 1.305718 AGCAGTCTCCAGGACCTCC 60.306 63.158 0.00 0.00 45.54 4.30
239 256 0.613292 TCAGCAGTCTCCAGGACCTC 60.613 60.000 0.00 0.00 45.54 3.85
246 263 1.203287 CATCTCGTTCAGCAGTCTCCA 59.797 52.381 0.00 0.00 0.00 3.86
248 265 2.645730 ACATCTCGTTCAGCAGTCTC 57.354 50.000 0.00 0.00 0.00 3.36
252 269 5.784750 TCAATTTACATCTCGTTCAGCAG 57.215 39.130 0.00 0.00 0.00 4.24
255 272 8.331022 CCATAGTTCAATTTACATCTCGTTCAG 58.669 37.037 0.00 0.00 0.00 3.02
262 279 6.990349 CCCGTACCATAGTTCAATTTACATCT 59.010 38.462 0.00 0.00 0.00 2.90
284 301 2.888414 GAGGGTATCTTCTCTTCTCCCG 59.112 54.545 0.00 0.00 38.52 5.14
306 323 1.546476 ACGAGAAGTGGGTGAGATGAC 59.454 52.381 0.00 0.00 0.00 3.06
373 395 2.353323 TCAACATCATGTGCTGCTCTC 58.647 47.619 0.00 0.00 0.00 3.20
547 831 9.478238 GGTAATAATAAAGGAAAAGGGTGGTTA 57.522 33.333 0.00 0.00 0.00 2.85
571 855 9.508642 GGGACTACGTATACTATAGTTTTAGGT 57.491 37.037 11.40 15.60 29.25 3.08
572 856 9.732130 AGGGACTACGTATACTATAGTTTTAGG 57.268 37.037 11.40 11.14 36.02 2.69
575 859 9.632638 TCAAGGGACTACGTATACTATAGTTTT 57.367 33.333 11.40 2.05 38.49 2.43
576 860 9.804977 ATCAAGGGACTACGTATACTATAGTTT 57.195 33.333 11.40 5.85 38.49 2.66
578 862 8.600668 TGATCAAGGGACTACGTATACTATAGT 58.399 37.037 10.87 10.87 38.49 2.12
579 863 8.881743 GTGATCAAGGGACTACGTATACTATAG 58.118 40.741 0.00 0.00 38.49 1.31
580 864 8.600668 AGTGATCAAGGGACTACGTATACTATA 58.399 37.037 0.00 0.00 38.49 1.31
581 865 7.460071 AGTGATCAAGGGACTACGTATACTAT 58.540 38.462 0.00 0.00 38.49 2.12
582 866 6.835174 AGTGATCAAGGGACTACGTATACTA 58.165 40.000 0.00 0.00 38.49 1.82
583 867 5.692928 AGTGATCAAGGGACTACGTATACT 58.307 41.667 0.00 0.00 38.49 2.12
584 868 5.048852 GGAGTGATCAAGGGACTACGTATAC 60.049 48.000 0.00 0.00 38.49 1.47
585 869 5.068636 GGAGTGATCAAGGGACTACGTATA 58.931 45.833 0.00 0.00 38.49 1.47
591 875 1.344087 GGGGGAGTGATCAAGGGACTA 60.344 57.143 0.00 0.00 38.49 2.59
698 990 1.594397 GTTTTCTGCCTGCTTGTTTGC 59.406 47.619 0.00 0.00 0.00 3.68
740 1032 4.825085 GCTTGCTCTCTGGAGTAGTAGTAT 59.175 45.833 0.00 0.00 41.38 2.12
745 1037 1.930251 TGCTTGCTCTCTGGAGTAGT 58.070 50.000 0.00 0.00 41.38 2.73
747 1039 1.066573 GCTTGCTTGCTCTCTGGAGTA 60.067 52.381 0.00 0.00 41.38 2.59
748 1040 0.321475 GCTTGCTTGCTCTCTGGAGT 60.321 55.000 0.00 0.00 41.38 3.85
749 1041 0.321387 TGCTTGCTTGCTCTCTGGAG 60.321 55.000 3.47 0.00 42.18 3.86
750 1042 0.109153 TTGCTTGCTTGCTCTCTGGA 59.891 50.000 3.47 0.00 0.00 3.86
751 1043 0.522180 CTTGCTTGCTTGCTCTCTGG 59.478 55.000 3.47 0.00 0.00 3.86
752 1044 0.109689 GCTTGCTTGCTTGCTCTCTG 60.110 55.000 3.47 0.00 0.00 3.35
753 1045 0.536687 TGCTTGCTTGCTTGCTCTCT 60.537 50.000 10.35 0.00 0.00 3.10
754 1046 0.313043 TTGCTTGCTTGCTTGCTCTC 59.687 50.000 10.35 0.00 0.00 3.20
759 1051 0.666577 GAGCCTTGCTTGCTTGCTTG 60.667 55.000 3.47 0.00 39.88 4.01
760 1052 1.664306 GAGCCTTGCTTGCTTGCTT 59.336 52.632 3.47 0.00 39.88 3.91
763 1055 2.564975 CCGAGCCTTGCTTGCTTG 59.435 61.111 0.00 3.73 39.88 4.01
764 1056 3.368571 GCCGAGCCTTGCTTGCTT 61.369 61.111 0.00 0.00 39.88 3.91
784 1076 3.219928 GATCCCTCTCGCCGAGCA 61.220 66.667 9.77 0.00 38.49 4.26
787 1079 0.683179 TCAAAGATCCCTCTCGCCGA 60.683 55.000 0.00 0.00 0.00 5.54
797 1090 1.521681 CGGAGCCGGTCAAAGATCC 60.522 63.158 1.90 0.00 35.56 3.36
828 1121 1.002792 AGGAAGCAGAGGAGAGGGG 59.997 63.158 0.00 0.00 0.00 4.79
829 1122 1.048160 GGAGGAAGCAGAGGAGAGGG 61.048 65.000 0.00 0.00 0.00 4.30
832 1125 0.707024 TGAGGAGGAAGCAGAGGAGA 59.293 55.000 0.00 0.00 0.00 3.71
840 1133 1.000731 CCGATGAGATGAGGAGGAAGC 59.999 57.143 0.00 0.00 0.00 3.86
971 1264 2.847715 GGTGGGGATACGGGGGAG 60.848 72.222 0.00 0.00 37.60 4.30
972 1265 4.502538 GGGTGGGGATACGGGGGA 62.503 72.222 0.00 0.00 37.60 4.81
1051 1352 2.365370 AGCAGAGCAGAGAGGGGG 60.365 66.667 0.00 0.00 0.00 5.40
1220 1532 0.037303 TCTTGCCCTTCCTCTGCTTG 59.963 55.000 0.00 0.00 0.00 4.01
1944 2267 1.017387 GGGAAGTTGCGGCAATCTAG 58.983 55.000 19.53 0.00 0.00 2.43
1945 2268 0.618458 AGGGAAGTTGCGGCAATCTA 59.382 50.000 19.53 0.00 0.00 1.98
1946 2269 0.251341 AAGGGAAGTTGCGGCAATCT 60.251 50.000 19.53 14.27 0.00 2.40
1969 2293 5.524281 TGCACACGTTATTCACTAAACAGAA 59.476 36.000 0.00 0.00 0.00 3.02
2157 2500 6.506500 AATGGAAAACTTCAGTGATAGCTG 57.493 37.500 0.00 0.00 37.81 4.24
2249 2618 6.591062 ACAATTAGCACATTAGGCAAACAATG 59.409 34.615 0.00 0.00 37.99 2.82
2292 2661 1.197721 CCAACAATCTCAGTGAACCGC 59.802 52.381 0.00 0.00 0.00 5.68
2352 2721 3.737559 ACATCAACCTCTTGGCCATAA 57.262 42.857 6.09 0.00 36.63 1.90
2517 2930 4.350368 TGTGCAGTCAGGACATAAGAAA 57.650 40.909 1.84 0.00 44.19 2.52
2531 2944 1.909781 CATGGCCCCTTTGTGCAGT 60.910 57.895 0.00 0.00 0.00 4.40
2596 3018 0.250858 CAGTCCACAGGCCAATCACA 60.251 55.000 5.01 0.00 0.00 3.58
2927 3476 7.093322 AGATCATCTGAAATTTACACAAGGC 57.907 36.000 0.00 0.00 0.00 4.35
2950 3499 5.335191 GCAATTAAATGATCTTAGGGCGGAG 60.335 44.000 0.00 0.00 0.00 4.63
3154 3705 2.605366 GTCTAGCGTGAAAGAGGATTGC 59.395 50.000 0.00 0.00 0.00 3.56
3170 3721 6.432472 AGGAAATTCCAAGAAAGCAAGTCTAG 59.568 38.462 15.21 0.00 39.61 2.43
3420 3971 9.515020 CAGTCTAATAACAAAGAGTTGCAAAAA 57.485 29.630 0.00 0.00 41.50 1.94
3450 4001 7.802738 TGGTGATTCTACATAGAAACAAAACG 58.197 34.615 11.79 0.00 43.56 3.60
3478 4029 6.826231 TGAAACTCAGTTGATAAAAGTGTGGA 59.174 34.615 0.00 0.00 0.00 4.02
3547 4098 6.594788 AGTGTGCTAACAATTCCATTTCAT 57.405 33.333 0.00 0.00 38.27 2.57
3567 4118 9.509855 GTGTTTCTACAATCTCTATCACTAGTG 57.490 37.037 17.17 17.17 35.69 2.74
3609 4160 2.706190 ACTGCCTTACAAGTTCCTCACT 59.294 45.455 0.00 0.00 37.30 3.41
3682 4233 7.217200 TGTAGAAAGTGTATCCATCTAATGCC 58.783 38.462 0.00 0.00 0.00 4.40
3770 4321 2.267006 CATCAGCGTCAGCCTGGT 59.733 61.111 0.00 0.00 46.67 4.00
4058 4609 3.938963 TCAAATGATAGCGGTCAAAGGAC 59.061 43.478 0.00 0.00 43.55 3.85
4067 4619 3.801050 CAGTCAGAGTCAAATGATAGCGG 59.199 47.826 0.00 0.00 0.00 5.52
4068 4620 4.676546 TCAGTCAGAGTCAAATGATAGCG 58.323 43.478 0.00 0.00 0.00 4.26
4113 4666 6.131961 AGCTTATCTTGCCATCCTACAATTT 58.868 36.000 0.00 0.00 0.00 1.82
4318 4871 2.224523 CCAGGAAGCTACACAAGGTTGA 60.225 50.000 0.00 0.00 45.83 3.18
4395 4948 2.483714 GCTTCATCAGGATACCAAGCGA 60.484 50.000 0.00 0.00 37.17 4.93
4447 5000 3.837731 TGGTCTGGATCACACAATCTACA 59.162 43.478 0.00 0.00 0.00 2.74
4644 5197 5.019785 ACGGAGGGAGTATGTGATTTTAC 57.980 43.478 0.00 0.00 0.00 2.01
4688 5241 6.481644 GCCATGGTTTTAGTTCAAAATTGTCA 59.518 34.615 14.67 0.00 38.36 3.58
4712 5266 3.039011 TCCTTATGGAGGGAGTAAGTGC 58.961 50.000 0.00 0.00 46.31 4.40
4721 5275 7.020827 TGCTCTTATATTTCCTTATGGAGGG 57.979 40.000 0.00 0.00 46.31 4.30
4859 5420 7.445402 CAGAATAATACACCCTCCCAATACTTG 59.555 40.741 0.00 0.00 0.00 3.16
4955 5553 1.123861 AACAGGCTCTGAGCACTCCA 61.124 55.000 28.95 0.00 44.75 3.86
4956 5554 0.390998 GAACAGGCTCTGAGCACTCC 60.391 60.000 28.95 13.06 44.75 3.85
5006 5604 5.359194 AATCTACCAGTTCCGTTCATCAT 57.641 39.130 0.00 0.00 0.00 2.45
5079 5677 3.741476 CTTTGCTCCGTGCCTGCC 61.741 66.667 0.00 0.00 42.00 4.85
5080 5678 3.741476 CCTTTGCTCCGTGCCTGC 61.741 66.667 0.00 0.00 42.00 4.85
5144 5744 3.181397 CAACCAACAAGACTGCAACTTG 58.819 45.455 23.07 23.07 46.69 3.16
5145 5745 2.166254 CCAACCAACAAGACTGCAACTT 59.834 45.455 0.00 0.00 0.00 2.66
5157 5757 0.178987 AATACCCGTGCCAACCAACA 60.179 50.000 0.00 0.00 0.00 3.33
5195 5797 1.079057 GAGGACGGCAACTCCCTTC 60.079 63.158 0.00 0.00 36.37 3.46
5342 5944 1.348036 TCACGACAGAGAGAGACCAGA 59.652 52.381 0.00 0.00 0.00 3.86
5343 5945 1.814793 TCACGACAGAGAGAGACCAG 58.185 55.000 0.00 0.00 0.00 4.00
5344 5946 2.026729 AGATCACGACAGAGAGAGACCA 60.027 50.000 0.00 0.00 0.00 4.02
5354 5956 5.163612 TGACCAGATAAGAAGATCACGACAG 60.164 44.000 0.00 0.00 0.00 3.51
5382 5999 1.372087 ATAACCGCAGCAGCAGAAGC 61.372 55.000 0.82 0.00 42.27 3.86
5385 6002 0.534873 TACATAACCGCAGCAGCAGA 59.465 50.000 0.82 0.00 42.27 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.