AutoCloner

Multiple sequence alignment - TraesCS2B01G226800

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G226800	chr2B	100.000	7221	0	0	1	7221	217408892	217416112	0.000000e+00	13335.0
1	TraesCS2B01G226800	chr2B	95.639	642	14	4	5084	5712	243100227	243099587	0.000000e+00	1018.0
2	TraesCS2B01G226800	chr2B	94.828	116	5	1	4929	5043	76813611	76813496	5.760000e-41	180.0
3	TraesCS2B01G226800	chr2D	91.393	1522	71	31	1	1499	160605992	160607476	0.000000e+00	2030.0
4	TraesCS2B01G226800	chr2D	89.398	1528	80	34	5707	7221	160608211	160609669	0.000000e+00	1849.0
5	TraesCS2B01G226800	chr2D	82.221	2008	293	39	1551	3527	59854266	59852292	0.000000e+00	1672.0
6	TraesCS2B01G226800	chr2D	87.568	185	13	3	5707	5891	160607720	160607894	9.500000e-49	206.0
7	TraesCS2B01G226800	chr2D	98.889	90	1	0	4280	4369	200890170	200890081	2.080000e-35	161.0
8	TraesCS2B01G226800	chr2D	81.000	200	31	7	4082	4279	620681235	620681429	1.250000e-32	152.0
9	TraesCS2B01G226800	chr2D	85.714	119	14	2	3869	3985	59852283	59852166	9.840000e-24	122.0
10	TraesCS2B01G226800	chr2D	79.870	154	10	2	4781	4913	160608011	160608164	7.710000e-15	93.5
11	TraesCS2B01G226800	chr2D	82.000	100	16	2	3863	3960	94347589	94347688	4.640000e-12	84.2
12	TraesCS2B01G226800	chr2D	76.220	164	30	9	4120	4278	29144697	29144538	2.160000e-10	78.7
13	TraesCS2B01G226800	chr2D	80.198	101	16	4	3863	3960	382335144	382335243	1.000000e-08	73.1
14	TraesCS2B01G226800	chr2A	90.308	1527	79	28	1	1499	171955949	171957434	0.000000e+00	1936.0
15	TraesCS2B01G226800	chr2A	91.734	738	42	10	6340	7064	171958320	171959051	0.000000e+00	1007.0
16	TraesCS2B01G226800	chr2A	92.962	611	42	1	5094	5704	131483251	131483860	0.000000e+00	889.0
17	TraesCS2B01G226800	chr2A	87.700	626	35	14	5707	6309	171957627	171958233	0.000000e+00	691.0
18	TraesCS2B01G226800	chr2A	86.567	67	7	2	4212	4276	704696346	704696280	1.000000e-08	73.1
19	TraesCS2B01G226800	chr7D	82.920	2014	273	41	1551	3534	112181031	112179059	0.000000e+00	1748.0
20	TraesCS2B01G226800	chr7D	79.561	1502	242	41	2075	3541	140238934	140237463	0.000000e+00	1013.0
21	TraesCS2B01G226800	chr7D	96.396	111	4	0	4938	5048	174803149	174803259	4.450000e-42	183.0
22	TraesCS2B01G226800	chr7D	98.889	90	1	0	4280	4369	626659725	626659636	2.080000e-35	161.0
23	TraesCS2B01G226800	chr7D	81.373	102	17	2	3863	3962	115038622	115038723	1.670000e-11	82.4
24	TraesCS2B01G226800	chr7D	91.228	57	5	0	1023	1079	556434465	556434521	2.160000e-10	78.7
25	TraesCS2B01G226800	chr7B	86.224	1568	193	16	1981	3533	134623693	134625252	0.000000e+00	1677.0
26	TraesCS2B01G226800	chr7B	96.497	628	11	1	5091	5707	649443766	649444393	0.000000e+00	1027.0
27	TraesCS2B01G226800	chr7B	92.484	612	42	4	5094	5705	115255587	115254980	0.000000e+00	872.0
28	TraesCS2B01G226800	chr7B	88.462	208	19	2	5112	5317	709626782	709626986	5.590000e-61	246.0
29	TraesCS2B01G226800	chr7B	91.538	130	9	2	4919	5047	535260051	535260179	2.070000e-40	178.0
30	TraesCS2B01G226800	chr6D	81.959	2001	308	38	1551	3517	354537751	354535770	0.000000e+00	1646.0
31	TraesCS2B01G226800	chr6D	92.582	337	19	1	3533	3863	465192684	465193020	5.070000e-131	479.0
32	TraesCS2B01G226800	chr6D	82.768	383	58	8	1582	1962	296995078	296995454	1.160000e-87	335.0
33	TraesCS2B01G226800	chr6D	98.889	90	1	0	4280	4369	43465384	43465295	2.080000e-35	161.0
34	TraesCS2B01G226800	chr4A	82.456	1938	278	28	1618	3524	80137419	80139325	0.000000e+00	1639.0
35	TraesCS2B01G226800	chr4A	83.822	1502	216	16	1870	3353	300448994	300447502	0.000000e+00	1402.0
36	TraesCS2B01G226800	chr4A	88.922	334	29	6	85	415	653987275	653987603	8.720000e-109	405.0
37	TraesCS2B01G226800	chr7A	81.648	1978	308	32	1572	3524	117278579	117276632	0.000000e+00	1591.0
38	TraesCS2B01G226800	chr7A	93.458	321	21	0	3533	3853	567434547	567434867	1.820000e-130	477.0
39	TraesCS2B01G226800	chr7A	92.308	130	9	1	4926	5054	619039542	619039671	4.450000e-42	183.0
40	TraesCS2B01G226800	chr7A	92.800	125	7	2	4923	5047	37008308	37008430	5.760000e-41	180.0
41	TraesCS2B01G226800	chr7A	83.019	106	16	1	3863	3966	653467531	653467426	2.140000e-15	95.3
42	TraesCS2B01G226800	chr1B	85.395	1568	190	21	1551	3112	403093550	403095084	0.000000e+00	1591.0
43	TraesCS2B01G226800	chr1B	96.632	386	13	0	4368	4753	135157857	135158242	6.110000e-180	641.0
44	TraesCS2B01G226800	chr1B	96.114	386	13	2	4368	4753	135160246	135160629	4.750000e-176	628.0
45	TraesCS2B01G226800	chr1B	96.094	384	15	0	4370	4753	135125743	135125360	1.710000e-175	627.0
46	TraesCS2B01G226800	chr1B	95.855	386	15	1	4368	4753	135135344	135134960	2.210000e-174	623.0
47	TraesCS2B01G226800	chr1B	95.078	386	19	0	4368	4753	135137744	135137359	6.190000e-170	608.0
48	TraesCS2B01G226800	chr1B	95.078	386	18	1	4368	4753	135169049	135169433	2.230000e-169	606.0
49	TraesCS2B01G226800	chr1B	95.078	386	18	1	4368	4753	135171449	135171833	2.230000e-169	606.0
50	TraesCS2B01G226800	chr1B	95.065	385	19	0	4369	4753	135186184	135186568	2.230000e-169	606.0
51	TraesCS2B01G226800	chr1B	94.819	386	19	1	4368	4753	135130545	135130161	1.040000e-167	601.0
52	TraesCS2B01G226800	chr1B	98.889	90	1	0	4280	4369	461415980	461416069	2.080000e-35	161.0
53	TraesCS2B01G226800	chr1B	83.333	120	18	1	3860	3977	56614416	56614535	7.660000e-20	110.0
54	TraesCS2B01G226800	chr1A	84.315	1511	197	29	1719	3202	150860215	150858718	0.000000e+00	1441.0
55	TraesCS2B01G226800	chr1A	92.962	611	42	1	5094	5704	507318432	507317823	0.000000e+00	889.0
56	TraesCS2B01G226800	chr1A	90.244	164	14	2	253	415	11790755	11790917	5.670000e-51	213.0
57	TraesCS2B01G226800	chr1A	97.778	90	2	0	4280	4369	94547417	94547506	9.700000e-34	156.0
58	TraesCS2B01G226800	chr1A	79.412	102	15	5	3863	3960	75250608	75250509	4.680000e-07	67.6
59	TraesCS2B01G226800	chr1A	78.000	100	20	2	3863	3960	137827979	137828078	2.180000e-05	62.1
60	TraesCS2B01G226800	chr3A	82.353	1683	232	36	1879	3540	105111627	105109989	0.000000e+00	1402.0
61	TraesCS2B01G226800	chr3A	90.212	613	50	5	5098	5704	60785939	60786547	0.000000e+00	791.0
62	TraesCS2B01G226800	chr3A	83.633	611	67	16	1551	2156	669966499	669965917	1.770000e-150	544.0
63	TraesCS2B01G226800	chr3A	83.633	611	67	16	1551	2156	669989754	669990336	1.770000e-150	544.0
64	TraesCS2B01G226800	chr3A	79.812	426	50	15	3889	4279	669990550	669990974	1.980000e-70	278.0
65	TraesCS2B01G226800	chr3A	85.259	251	32	4	4033	4279	669965018	669964769	3.340000e-63	254.0
66	TraesCS2B01G226800	chr3A	94.068	118	5	2	4936	5052	308675918	308676034	2.070000e-40	178.0
67	TraesCS2B01G226800	chr3A	98.876	89	1	0	4280	4368	230218366	230218454	7.500000e-35	159.0
68	TraesCS2B01G226800	chr3A	81.752	137	16	7	3863	3994	700158154	700158022	9.910000e-19	106.0
69	TraesCS2B01G226800	chr5A	83.829	1447	214	17	1551	2990	435568472	435569905	0.000000e+00	1358.0
70	TraesCS2B01G226800	chr5A	79.086	985	166	26	1551	2517	460473628	460472666	6.110000e-180	641.0
71	TraesCS2B01G226800	chr5A	100.000	90	0	0	4280	4369	667743902	667743991	4.480000e-37	167.0
72	TraesCS2B01G226800	chr5A	75.534	421	57	31	3863	4243	454083004	454082590	1.610000e-36	165.0
73	TraesCS2B01G226800	chr6A	93.781	611	34	1	5094	5704	517998495	517997889	0.000000e+00	915.0
74	TraesCS2B01G226800	chr6A	92.799	611	42	2	5094	5704	19414844	19414236	0.000000e+00	883.0
75	TraesCS2B01G226800	chr6A	82.545	613	68	23	5096	5704	71956755	71956178	3.010000e-138	503.0
76	TraesCS2B01G226800	chr6A	95.575	113	5	0	4938	5050	158088023	158087911	1.600000e-41	182.0
77	TraesCS2B01G226800	chr6A	78.970	233	31	10	3863	4080	187743031	187742802	7.550000e-30	143.0
78	TraesCS2B01G226800	chr6A	81.373	102	13	5	3863	3960	602950379	602950280	2.160000e-10	78.7
79	TraesCS2B01G226800	chr6A	79.612	103	19	1	3860	3960	455944762	455944864	1.000000e-08	73.1
80	TraesCS2B01G226800	chr6A	79.000	100	19	2	3863	3960	168014613	168014712	4.680000e-07	67.6
81	TraesCS2B01G226800	chr4B	93.301	612	38	3	5094	5704	628035023	628034414	0.000000e+00	900.0
82	TraesCS2B01G226800	chr4B	82.319	871	118	27	2681	3534	454651891	454651040	0.000000e+00	723.0
83	TraesCS2B01G226800	chr3D	85.550	609	58	15	1551	2156	534676927	534677508	1.720000e-170	610.0
84	TraesCS2B01G226800	chr3D	94.025	318	18	1	3524	3841	296183963	296183647	1.410000e-131	481.0
85	TraesCS2B01G226800	chr3D	98.876	89	1	0	4280	4368	478084999	478085087	7.500000e-35	159.0
86	TraesCS2B01G226800	chr4D	81.984	766	86	24	2782	3534	99281907	99281181	2.880000e-168	603.0
87	TraesCS2B01G226800	chr4D	95.469	309	14	0	3533	3841	64046162	64046470	1.810000e-135	494.0
88	TraesCS2B01G226800	chr4D	92.941	340	22	2	3529	3868	502633059	502633396	1.810000e-135	494.0
89	TraesCS2B01G226800	chr4D	92.638	326	24	0	3535	3860	160734961	160734636	3.050000e-128	470.0
90	TraesCS2B01G226800	chr4D	98.889	90	1	0	4280	4369	123599513	123599602	2.080000e-35	161.0
91	TraesCS2B01G226800	chr4D	98.864	88	1	0	4280	4367	241253833	241253746	2.700000e-34	158.0
92	TraesCS2B01G226800	chr4D	97.778	90	2	0	4280	4369	88102136	88102225	9.700000e-34	156.0
93	TraesCS2B01G226800	chr4D	97.778	90	2	0	4280	4369	240989409	240989498	9.700000e-34	156.0
94	TraesCS2B01G226800	chr5D	95.779	308	13	0	3534	3841	367986774	367987081	1.400000e-136	497.0
95	TraesCS2B01G226800	chr5D	92.711	343	19	2	3526	3863	458903083	458902742	2.340000e-134	490.0
96	TraesCS2B01G226800	chr5D	94.017	117	7	0	4938	5054	72874006	72874122	2.070000e-40	178.0
97	TraesCS2B01G226800	chr5D	97.222	72	2	0	4607	4678	61073885	61073956	9.840000e-24	122.0
98	TraesCS2B01G226800	chr5D	93.023	43	3	0	3929	3971	254410416	254410458	6.050000e-06	63.9
99	TraesCS2B01G226800	chr1D	94.569	313	17	0	3529	3841	436279338	436279650	1.090000e-132	484.0
100	TraesCS2B01G226800	chr1D	98.889	90	1	0	4280	4369	350983777	350983688	2.080000e-35	161.0
101	TraesCS2B01G226800	chr1D	81.553	103	17	2	3860	3960	202538403	202538505	4.640000e-12	84.2
102	TraesCS2B01G226800	chr1D	79.612	103	19	2	3860	3960	422289095	422289197	1.000000e-08	73.1
103	TraesCS2B01G226800	chr1D	77.885	104	20	3	3860	3960	18675485	18675588	2.180000e-05	62.1
104	TraesCS2B01G226800	chr3B	87.342	395	42	8	1764	2156	706531115	706531503	5.140000e-121	446.0
105	TraesCS2B01G226800	chr3B	80.995	563	86	12	1551	2099	748774803	748774248	1.860000e-115	427.0
106	TraesCS2B01G226800	chr3B	89.941	169	14	2	97	262	805667244	805667412	1.580000e-51	215.0
107	TraesCS2B01G226800	chrUn	88.235	323	30	7	100	418	64366668	64366350	5.290000e-101	379.0
108	TraesCS2B01G226800	chrUn	97.778	90	2	0	4280	4369	186173242	186173153	9.700000e-34	156.0
109	TraesCS2B01G226800	chrUn	97.778	90	2	0	4280	4369	355126311	355126400	9.700000e-34	156.0
110	TraesCS2B01G226800	chrUn	96.667	90	3	0	4280	4369	45110258	45110169	4.510000e-32	150.0
111	TraesCS2B01G226800	chrUn	96.667	90	3	0	4280	4369	45129034	45129123	4.510000e-32	150.0
112	TraesCS2B01G226800	chrUn	96.667	90	3	0	4280	4369	171026465	171026376	4.510000e-32	150.0
113	TraesCS2B01G226800	chrUn	96.667	90	3	0	4280	4369	444910585	444910674	4.510000e-32	150.0
114	TraesCS2B01G226800	chrUn	98.592	71	1	0	4280	4350	439744594	439744524	7.600000e-25	126.0
115	TraesCS2B01G226800	chrUn	100.000	59	0	0	4311	4369	189401029	189400971	7.660000e-20	110.0
116	TraesCS2B01G226800	chrUn	100.000	59	0	0	4311	4369	251415523	251415581	7.660000e-20	110.0
117	TraesCS2B01G226800	chrUn	96.875	64	2	0	4280	4343	86496229	86496292	2.750000e-19	108.0
118	TraesCS2B01G226800	chrUn	96.875	64	2	0	4280	4343	186173172	186173109	2.750000e-19	108.0
119	TraesCS2B01G226800	chrUn	100.000	30	0	0	4340	4369	86496219	86496248	1.000000e-03	56.5
120	TraesCS2B01G226800	chrUn	94.286	35	2	0	3929	3963	59795529	59795495	4.000000e-03	54.7
121	TraesCS2B01G226800	chr5B	94.118	119	6	1	4927	5044	134582442	134582560	5.760000e-41	180.0
122	TraesCS2B01G226800	chr5B	98.889	90	1	0	4280	4369	130623823	130623734	2.080000e-35	161.0
123	TraesCS2B01G226800	chr5B	98.889	90	1	0	4280	4369	533082425	533082514	2.080000e-35	161.0
124	TraesCS2B01G226800	chr5B	87.629	97	12	0	3889	3985	700372464	700372560	5.920000e-21	113.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G226800	chr2B	217408892	217416112	7220	False	13335.000000	13335	100.00000	1	7221	1	chr2B.!!$F1	7220
1	TraesCS2B01G226800	chr2B	243099587	243100227	640	True	1018.000000	1018	95.63900	5084	5712	1	chr2B.!!$R2	628
2	TraesCS2B01G226800	chr2D	160605992	160609669	3677	False	1044.625000	2030	87.05725	1	7221	4	chr2D.!!$F4	7220
3	TraesCS2B01G226800	chr2D	59852166	59854266	2100	True	897.000000	1672	83.96750	1551	3985	2	chr2D.!!$R3	2434
4	TraesCS2B01G226800	chr2A	171955949	171959051	3102	False	1211.333333	1936	89.91400	1	7064	3	chr2A.!!$F2	7063
5	TraesCS2B01G226800	chr2A	131483251	131483860	609	False	889.000000	889	92.96200	5094	5704	1	chr2A.!!$F1	610
6	TraesCS2B01G226800	chr7D	112179059	112181031	1972	True	1748.000000	1748	82.92000	1551	3534	1	chr7D.!!$R1	1983
7	TraesCS2B01G226800	chr7D	140237463	140238934	1471	True	1013.000000	1013	79.56100	2075	3541	1	chr7D.!!$R2	1466
8	TraesCS2B01G226800	chr7B	134623693	134625252	1559	False	1677.000000	1677	86.22400	1981	3533	1	chr7B.!!$F1	1552
9	TraesCS2B01G226800	chr7B	649443766	649444393	627	False	1027.000000	1027	96.49700	5091	5707	1	chr7B.!!$F3	616
10	TraesCS2B01G226800	chr7B	115254980	115255587	607	True	872.000000	872	92.48400	5094	5705	1	chr7B.!!$R1	611
11	TraesCS2B01G226800	chr6D	354535770	354537751	1981	True	1646.000000	1646	81.95900	1551	3517	1	chr6D.!!$R2	1966
12	TraesCS2B01G226800	chr4A	80137419	80139325	1906	False	1639.000000	1639	82.45600	1618	3524	1	chr4A.!!$F1	1906
13	TraesCS2B01G226800	chr4A	300447502	300448994	1492	True	1402.000000	1402	83.82200	1870	3353	1	chr4A.!!$R1	1483
14	TraesCS2B01G226800	chr7A	117276632	117278579	1947	True	1591.000000	1591	81.64800	1572	3524	1	chr7A.!!$R1	1952
15	TraesCS2B01G226800	chr1B	403093550	403095084	1534	False	1591.000000	1591	85.39500	1551	3112	1	chr1B.!!$F3	1561
16	TraesCS2B01G226800	chr1B	135157857	135160629	2772	False	634.500000	641	96.37300	4368	4753	2	chr1B.!!$F5	385
17	TraesCS2B01G226800	chr1B	135134960	135137744	2784	True	615.500000	623	95.46650	4368	4753	2	chr1B.!!$R3	385
18	TraesCS2B01G226800	chr1B	135169049	135171833	2784	False	606.000000	606	95.07800	4368	4753	2	chr1B.!!$F6	385
19	TraesCS2B01G226800	chr1A	150858718	150860215	1497	True	1441.000000	1441	84.31500	1719	3202	1	chr1A.!!$R2	1483
20	TraesCS2B01G226800	chr1A	507317823	507318432	609	True	889.000000	889	92.96200	5094	5704	1	chr1A.!!$R3	610
21	TraesCS2B01G226800	chr3A	105109989	105111627	1638	True	1402.000000	1402	82.35300	1879	3540	1	chr3A.!!$R1	1661
22	TraesCS2B01G226800	chr3A	60785939	60786547	608	False	791.000000	791	90.21200	5098	5704	1	chr3A.!!$F1	606
23	TraesCS2B01G226800	chr3A	669989754	669990974	1220	False	411.000000	544	81.72250	1551	4279	2	chr3A.!!$F4	2728
24	TraesCS2B01G226800	chr3A	669964769	669966499	1730	True	399.000000	544	84.44600	1551	4279	2	chr3A.!!$R3	2728
25	TraesCS2B01G226800	chr5A	435568472	435569905	1433	False	1358.000000	1358	83.82900	1551	2990	1	chr5A.!!$F1	1439
26	TraesCS2B01G226800	chr5A	460472666	460473628	962	True	641.000000	641	79.08600	1551	2517	1	chr5A.!!$R2	966
27	TraesCS2B01G226800	chr6A	517997889	517998495	606	True	915.000000	915	93.78100	5094	5704	1	chr6A.!!$R5	610
28	TraesCS2B01G226800	chr6A	19414236	19414844	608	True	883.000000	883	92.79900	5094	5704	1	chr6A.!!$R1	610
29	TraesCS2B01G226800	chr6A	71956178	71956755	577	True	503.000000	503	82.54500	5096	5704	1	chr6A.!!$R2	608
30	TraesCS2B01G226800	chr4B	628034414	628035023	609	True	900.000000	900	93.30100	5094	5704	1	chr4B.!!$R2	610
31	TraesCS2B01G226800	chr4B	454651040	454651891	851	True	723.000000	723	82.31900	2681	3534	1	chr4B.!!$R1	853
32	TraesCS2B01G226800	chr3D	534676927	534677508	581	False	610.000000	610	85.55000	1551	2156	1	chr3D.!!$F2	605
33	TraesCS2B01G226800	chr4D	99281181	99281907	726	True	603.000000	603	81.98400	2782	3534	1	chr4D.!!$R1	752
34	TraesCS2B01G226800	chr3B	748774248	748774803	555	True	427.000000	427	80.99500	1551	2099	1	chr3B.!!$R1	548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
802	809	0.533755	GAATCTGGTGCGGGATCTGG	60.534	60.0	0.00	0.00	0.00	3.86	F
2525	3137	0.249699	AACAAGTGTCGGCGATCACA	60.250	50.0	29.88	17.44	37.07	3.58	F
3688	4369	0.105408	GGCTTGGGCTTGGCATATTG	59.895	55.0	0.00	0.00	38.73	1.90	F
3689	4370	0.105408	GCTTGGGCTTGGCATATTGG	59.895	55.0	0.00	0.00	35.22	3.16	F
3820	4501	0.165944	CGCCTTAGTTTTCAGCCGTG	59.834	55.0	0.00	0.00	0.00	4.94	F
4965	8616	0.247537	CGTTCGGAATTACTTGCCGC	60.248	55.0	0.00	0.00	44.45	6.53	F
4968	8619	0.248012	TCGGAATTACTTGCCGCAGA	59.752	50.0	0.00	0.00	44.45	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2531	3143	0.110192	CGCCGGCTCAGTTCTTTTTC	60.110	55.0	26.68	0.00	0.00	2.29	R
3855	4536	0.101759	GCGAGGCGGTCACAACTATA	59.898	55.0	0.00	0.00	0.00	1.31	R
4934	8585	0.038744	TCCGAACGGAGGGAGTACTT	59.961	55.0	12.04	0.00	39.76	2.24	R
4935	8586	0.038744	TTCCGAACGGAGGGAGTACT	59.961	55.0	15.34	0.00	46.06	2.73	R
5811	9484	0.108138	GCACACAGTACTGCCCTAGG	60.108	60.0	22.90	0.06	0.00	3.02	R
6052	9732	0.387929	TTGCCAGAGTCGAGAACGTT	59.612	50.0	0.00	0.00	40.69	3.99	R
6583	10336	0.817654	CTCCATGTCTAGCGTCACCA	59.182	55.0	0.00	0.00	0.00	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	7.683437	ATTTACTGGCAACTTAAGAGGTAAC	57.317	36.000	10.09	0.00	37.61	2.50
52	53	4.104261	ACTGGCAACTTAAGAGGTAACCTT	59.896	41.667	10.09	0.00	32.08	3.50
57	58	6.070938	GGCAACTTAAGAGGTAACCTTAGAGA	60.071	42.308	10.09	0.00	31.76	3.10
80	84	4.311700	TGGACCACCAGCTCAGAA	57.688	55.556	0.00	0.00	41.77	3.02
81	85	1.754745	TGGACCACCAGCTCAGAAC	59.245	57.895	0.00	0.00	41.77	3.01
254	261	0.909623	GGGGCTTGGCTTGTACTAGA	59.090	55.000	8.60	0.00	0.00	2.43
256	263	1.407025	GGGCTTGGCTTGTACTAGACC	60.407	57.143	7.75	8.85	31.90	3.85
466	473	1.333636	CGCAGGGAGTTGGATCCTCT	61.334	60.000	14.23	11.34	39.50	3.69
504	511	4.467084	GGCGAGGACGATGGGCAA	62.467	66.667	0.00	0.00	42.66	4.52
505	512	2.435938	GCGAGGACGATGGGCAAA	60.436	61.111	0.00	0.00	42.66	3.68
631	638	4.598319	TCGCCTCCCGATCCCGAT	62.598	66.667	0.00	0.00	41.89	4.18
632	639	4.057428	CGCCTCCCGATCCCGATC	62.057	72.222	0.00	0.00	40.02	3.69
633	640	3.696676	GCCTCCCGATCCCGATCC	61.697	72.222	0.00	0.00	38.22	3.36
634	641	2.997897	CCTCCCGATCCCGATCCC	60.998	72.222	0.00	0.00	38.22	3.85
635	642	3.374402	CTCCCGATCCCGATCCCG	61.374	72.222	0.00	0.00	38.22	5.14
636	643	3.862744	CTCCCGATCCCGATCCCGA	62.863	68.421	0.00	0.00	38.22	5.14
641	648	1.305381	GATCCCGATCCCGATCCCT	60.305	63.158	5.67	0.00	38.22	4.20
642	649	0.905337	GATCCCGATCCCGATCCCTT	60.905	60.000	5.67	0.00	38.22	3.95
671	678	2.104132	CCATCGATCGTGGTCGCA	59.896	61.111	21.40	1.34	41.22	5.10
800	807	1.443407	CGAATCTGGTGCGGGATCT	59.557	57.895	0.00	0.00	0.00	2.75
802	809	0.533755	GAATCTGGTGCGGGATCTGG	60.534	60.000	0.00	0.00	0.00	3.86
822	829	4.137872	TTACGGGCCCTCGAAGCG	62.138	66.667	22.43	7.03	0.00	4.68
848	855	0.611896	AGAAGATTTGGGTTGGCCGG	60.612	55.000	0.00	0.00	34.97	6.13
1091	1111	0.528470	CCAGTGACGGAGAGAAGGAC	59.472	60.000	0.00	0.00	0.00	3.85
1095	1115	1.153997	GACGGAGAGAAGGACGCAC	60.154	63.158	0.00	0.00	0.00	5.34
1096	1116	2.182030	CGGAGAGAAGGACGCACC	59.818	66.667	0.00	0.00	39.35	5.01
1126	1146	4.052229	CGGGCAACTCCTCGTCGT	62.052	66.667	0.00	0.00	34.39	4.34
1127	1147	2.126031	GGGCAACTCCTCGTCGTC	60.126	66.667	0.00	0.00	34.39	4.20
1129	1149	2.254651	GCAACTCCTCGTCGTCGT	59.745	61.111	1.33	0.00	38.33	4.34
1130	1150	1.796749	GCAACTCCTCGTCGTCGTC	60.797	63.158	1.33	0.00	38.33	4.20
1265	1285	0.850784	CCTCCCCCGGGTAATCATTT	59.149	55.000	21.85	0.00	36.47	2.32
1266	1286	1.216930	CCTCCCCCGGGTAATCATTTT	59.783	52.381	21.85	0.00	36.47	1.82
1296	1316	1.301401	CCGTTCTCCTCGTGCCAAA	60.301	57.895	0.00	0.00	0.00	3.28
1471	1498	4.462133	CCTAACCTACGGAGAAGAGATGA	58.538	47.826	0.00	0.00	0.00	2.92
1475	1502	3.566322	ACCTACGGAGAAGAGATGAATCG	59.434	47.826	0.00	0.00	0.00	3.34
1499	1531	7.872993	TCGATCTTCAATACTCTGAAACAACTT	59.127	33.333	0.00	0.00	34.96	2.66
1512	1593	5.347342	TGAAACAACTTTGGTGCATACTTG	58.653	37.500	0.00	0.00	25.27	3.16
1513	1594	4.320608	AACAACTTTGGTGCATACTTGG	57.679	40.909	0.00	0.00	0.00	3.61
1520	1601	3.849563	TGGTGCATACTTGGGTATACC	57.150	47.619	13.99	13.99	37.47	2.73
1558	2087	0.743097	GGCCATTTGTCAGAGCATCC	59.257	55.000	0.00	0.00	33.66	3.51
1568	2097	1.211212	TCAGAGCATCCCCACTCATTG	59.789	52.381	0.00	0.00	35.28	2.82
1599	2130	2.254051	CCGGCGATTGCGTTTTGT	59.746	55.556	9.30	0.00	44.10	2.83
1600	2131	1.498166	CCGGCGATTGCGTTTTGTA	59.502	52.632	9.30	0.00	44.10	2.41
1613	2144	1.737793	GTTTTGTAGTATGCGCTGGCT	59.262	47.619	9.73	6.18	40.82	4.75
1614	2145	2.107950	TTTGTAGTATGCGCTGGCTT	57.892	45.000	9.73	0.00	40.82	4.35
1615	2146	2.107950	TTGTAGTATGCGCTGGCTTT	57.892	45.000	9.73	0.00	40.82	3.51
1643	2175	3.917760	CCTCGGGGCGATCCAGTC	61.918	72.222	0.00	0.00	34.61	3.51
1644	2176	3.917760	CTCGGGGCGATCCAGTCC	61.918	72.222	0.00	0.00	34.61	3.85
1651	2183	2.903357	CGATCCAGTCCCCCAGTG	59.097	66.667	0.00	0.00	0.00	3.66
1679	2214	1.190178	AGGTTTCGGCCCTTAGACGT	61.190	55.000	0.00	0.00	0.00	4.34
1744	2281	1.893335	TTCGGCCATCATCATGCCG	60.893	57.895	15.44	15.44	44.49	5.69
1775	2346	1.199615	TCACCATGCCATAGTTCGGA	58.800	50.000	0.00	0.00	0.00	4.55
1835	2430	0.433492	CACGTAGACAAAGGAACGCG	59.567	55.000	3.53	3.53	38.87	6.01
2064	2674	1.302033	CGCCTTGACCTGCTTGTCT	60.302	57.895	7.53	0.00	36.21	3.41
2216	2827	1.966451	CTCCCTCTTTGCGGCGTTT	60.966	57.895	9.37	0.00	0.00	3.60
2218	2829	1.081442	CCCTCTTTGCGGCGTTTTC	60.081	57.895	9.37	0.00	0.00	2.29
2234	2845	0.527113	TTTCCTTGGCGTCGACGATA	59.473	50.000	39.74	24.35	43.02	2.92
2251	2862	1.982223	GATACACTGCTCGATCGATGC	59.018	52.381	19.78	22.32	0.00	3.91
2263	2874	1.398390	GATCGATGCTTGAAGCCGTTT	59.602	47.619	15.43	4.52	41.51	3.60
2324	2935	4.609018	CCAGTAGGGCGCCCATCG	62.609	72.222	45.13	29.09	38.92	3.84
2368	2979	3.515502	TCTGACCTGTACATCTTCTTGGG	59.484	47.826	0.00	0.00	0.00	4.12
2478	3089	1.376683	TCCTGGCGGTACATGTTGC	60.377	57.895	2.30	6.25	0.00	4.17
2500	3111	2.039480	ACATCTGAACCATCTGCACAGT	59.961	45.455	0.00	0.00	0.00	3.55
2522	3134	1.390463	GAAGAACAAGTGTCGGCGATC	59.610	52.381	14.79	9.98	0.00	3.69
2523	3135	0.317160	AGAACAAGTGTCGGCGATCA	59.683	50.000	14.79	10.57	0.00	2.92
2524	3136	0.438830	GAACAAGTGTCGGCGATCAC	59.561	55.000	24.88	24.88	35.13	3.06
2525	3137	0.249699	AACAAGTGTCGGCGATCACA	60.250	50.000	29.88	17.44	37.07	3.58
2611	3228	3.453679	GAGCCGCGACCTCCTCTT	61.454	66.667	8.23	0.00	0.00	2.85
2912	3537	1.082117	TTTCTCCCTTTCGCGATCGC	61.082	55.000	29.80	29.80	35.26	4.58
2949	3583	1.153745	CTCCGCCTGTTCTTCCTCG	60.154	63.158	0.00	0.00	0.00	4.63
3071	3720	1.645034	GTGGTGATCTCGTCCATGTG	58.355	55.000	0.00	0.00	33.68	3.21
3528	4209	1.520666	CCTATTCCGTCGGTTGGCT	59.479	57.895	11.88	0.00	0.00	4.75
3535	4216	1.287815	CGTCGGTTGGCTGTGACTA	59.712	57.895	0.00	0.00	0.00	2.59
3536	4217	0.732880	CGTCGGTTGGCTGTGACTAG	60.733	60.000	0.00	0.00	0.00	2.57
3537	4218	0.317479	GTCGGTTGGCTGTGACTAGT	59.683	55.000	0.00	0.00	0.00	2.57
3538	4219	0.601558	TCGGTTGGCTGTGACTAGTC	59.398	55.000	16.32	16.32	0.00	2.59
3539	4220	0.389948	CGGTTGGCTGTGACTAGTCC	60.390	60.000	20.11	11.73	0.00	3.85
3540	4221	0.977395	GGTTGGCTGTGACTAGTCCT	59.023	55.000	20.11	0.00	0.00	3.85
3541	4222	1.338200	GGTTGGCTGTGACTAGTCCTG	60.338	57.143	20.11	14.90	0.00	3.86
3542	4223	0.976641	TTGGCTGTGACTAGTCCTGG	59.023	55.000	20.11	10.42	0.00	4.45
3543	4224	1.219393	GGCTGTGACTAGTCCTGGC	59.781	63.158	20.11	20.05	0.00	4.85
3544	4225	1.219393	GCTGTGACTAGTCCTGGCC	59.781	63.158	20.11	0.00	0.00	5.36
3545	4226	1.544825	GCTGTGACTAGTCCTGGCCA	61.545	60.000	20.11	4.71	0.00	5.36
3546	4227	1.198713	CTGTGACTAGTCCTGGCCAT	58.801	55.000	20.11	0.00	0.00	4.40
3547	4228	1.137872	CTGTGACTAGTCCTGGCCATC	59.862	57.143	20.11	0.00	0.00	3.51
3548	4229	1.273267	TGTGACTAGTCCTGGCCATCT	60.273	52.381	20.11	8.22	0.00	2.90
3549	4230	1.410882	GTGACTAGTCCTGGCCATCTC	59.589	57.143	20.11	0.00	0.00	2.75
3550	4231	1.044611	GACTAGTCCTGGCCATCTCC	58.955	60.000	5.51	0.00	0.00	3.71
3551	4232	0.757188	ACTAGTCCTGGCCATCTCCG	60.757	60.000	5.51	0.00	0.00	4.63
3552	4233	1.457643	TAGTCCTGGCCATCTCCGG	60.458	63.158	5.51	3.08	0.00	5.14
3592	4273	2.520982	GGCCCGGCCCTAAAATCC	60.521	66.667	18.83	0.00	44.06	3.01
3593	4274	2.277404	GCCCGGCCCTAAAATCCA	59.723	61.111	0.00	0.00	0.00	3.41
3594	4275	1.828224	GCCCGGCCCTAAAATCCAG	60.828	63.158	0.00	0.00	0.00	3.86
3595	4276	1.152756	CCCGGCCCTAAAATCCAGG	60.153	63.158	0.00	0.00	0.00	4.45
3601	4282	2.959465	CCCTAAAATCCAGGGCCTAG	57.041	55.000	5.28	0.00	46.27	3.02
3602	4283	1.425448	CCCTAAAATCCAGGGCCTAGG	59.575	57.143	5.28	10.90	46.27	3.02
3603	4284	1.202940	CCTAAAATCCAGGGCCTAGGC	60.203	57.143	26.55	26.55	41.06	3.93
3620	4301	4.431131	CCCGATGGGCTTGCCTGT	62.431	66.667	11.71	0.42	35.35	4.00
3621	4302	3.136123	CCGATGGGCTTGCCTGTG	61.136	66.667	11.71	0.00	0.00	3.66
3622	4303	3.136123	CGATGGGCTTGCCTGTGG	61.136	66.667	11.71	0.00	0.00	4.17
3646	4327	2.732289	GCTTGGGCCTGAGTTTTGA	58.268	52.632	4.53	0.00	0.00	2.69
3647	4328	0.600057	GCTTGGGCCTGAGTTTTGAG	59.400	55.000	4.53	0.00	0.00	3.02
3648	4329	0.600057	CTTGGGCCTGAGTTTTGAGC	59.400	55.000	4.53	0.00	0.00	4.26
3649	4330	0.827507	TTGGGCCTGAGTTTTGAGCC	60.828	55.000	4.53	0.00	43.09	4.70
3650	4331	3.686760	GGCCTGAGTTTTGAGCCC	58.313	61.111	0.00	0.00	37.66	5.19
3651	4332	1.228552	GGCCTGAGTTTTGAGCCCA	60.229	57.895	0.00	0.00	37.66	5.36
3652	4333	0.613012	GGCCTGAGTTTTGAGCCCAT	60.613	55.000	0.00	0.00	37.66	4.00
3653	4334	0.813821	GCCTGAGTTTTGAGCCCATC	59.186	55.000	0.00	0.00	0.00	3.51
3654	4335	1.887956	GCCTGAGTTTTGAGCCCATCA	60.888	52.381	0.00	0.00	35.62	3.07
3655	4336	2.731572	CCTGAGTTTTGAGCCCATCAT	58.268	47.619	0.00	0.00	37.89	2.45
3656	4337	2.686915	CCTGAGTTTTGAGCCCATCATC	59.313	50.000	0.00	0.00	37.89	2.92
3657	4338	3.349927	CTGAGTTTTGAGCCCATCATCA	58.650	45.455	0.00	0.00	37.89	3.07
3658	4339	3.349927	TGAGTTTTGAGCCCATCATCAG	58.650	45.455	0.00	0.00	37.89	2.90
3659	4340	2.686915	GAGTTTTGAGCCCATCATCAGG	59.313	50.000	0.00	0.00	37.89	3.86
3665	4346	2.519441	CCCATCATCAGGGCCTGG	59.481	66.667	32.23	17.99	39.96	4.45
3666	4347	2.080536	CCCATCATCAGGGCCTGGA	61.081	63.158	32.23	22.63	39.96	3.86
3667	4348	1.150081	CCATCATCAGGGCCTGGAC	59.850	63.158	32.23	0.00	31.51	4.02
3668	4349	1.227764	CATCATCAGGGCCTGGACG	60.228	63.158	32.23	20.32	31.51	4.79
3669	4350	2.446848	ATCATCAGGGCCTGGACGG	61.447	63.158	32.23	18.72	31.51	4.79
3670	4351	4.181010	CATCAGGGCCTGGACGGG	62.181	72.222	32.23	13.97	31.51	5.28
3679	4360	4.351054	CTGGACGGGCTTGGGCTT	62.351	66.667	0.00	0.00	38.73	4.35
3680	4361	4.659172	TGGACGGGCTTGGGCTTG	62.659	66.667	0.00	0.00	38.73	4.01
3685	4366	2.043046	GGGCTTGGGCTTGGCATA	60.043	61.111	0.00	0.00	38.73	3.14
3686	4367	1.458209	GGGCTTGGGCTTGGCATAT	60.458	57.895	0.00	0.00	38.73	1.78
3687	4368	1.050421	GGGCTTGGGCTTGGCATATT	61.050	55.000	0.00	0.00	38.73	1.28
3688	4369	0.105408	GGCTTGGGCTTGGCATATTG	59.895	55.000	0.00	0.00	38.73	1.90
3689	4370	0.105408	GCTTGGGCTTGGCATATTGG	59.895	55.000	0.00	0.00	35.22	3.16
3690	4371	0.105408	CTTGGGCTTGGCATATTGGC	59.895	55.000	0.00	0.00	44.03	4.52
3703	4384	6.160576	GGCATATTGGCATTTTAAGGAAGA	57.839	37.500	0.00	0.00	43.14	2.87
3704	4385	6.218746	GGCATATTGGCATTTTAAGGAAGAG	58.781	40.000	0.00	0.00	43.14	2.85
3705	4386	6.218746	GCATATTGGCATTTTAAGGAAGAGG	58.781	40.000	0.00	0.00	0.00	3.69
3706	4387	4.743057	ATTGGCATTTTAAGGAAGAGGC	57.257	40.909	0.00	0.00	0.00	4.70
3707	4388	2.456577	TGGCATTTTAAGGAAGAGGCC	58.543	47.619	0.00	0.00	40.51	5.19
3708	4389	1.757118	GGCATTTTAAGGAAGAGGCCC	59.243	52.381	0.00	0.00	34.17	5.80
3709	4390	1.405463	GCATTTTAAGGAAGAGGCCCG	59.595	52.381	0.00	0.00	0.00	6.13
3710	4391	2.024414	CATTTTAAGGAAGAGGCCCGG	58.976	52.381	0.00	0.00	0.00	5.73
3711	4392	0.323087	TTTTAAGGAAGAGGCCCGGC	60.323	55.000	0.00	0.00	0.00	6.13
3712	4393	1.493854	TTTAAGGAAGAGGCCCGGCA	61.494	55.000	12.58	0.00	0.00	5.69
3713	4394	2.193087	TTAAGGAAGAGGCCCGGCAC	62.193	60.000	12.58	4.68	0.00	5.01
3743	4424	3.596362	CCCTAAGGGCTTTTCAGGG	57.404	57.895	3.08	3.08	40.10	4.45
3744	4425	0.684479	CCCTAAGGGCTTTTCAGGGC	60.684	60.000	4.44	0.00	39.62	5.19
3745	4426	0.332972	CCTAAGGGCTTTTCAGGGCT	59.667	55.000	0.00	0.00	0.00	5.19
3746	4427	1.272704	CCTAAGGGCTTTTCAGGGCTT	60.273	52.381	0.00	0.00	0.00	4.35
3747	4428	2.529632	CTAAGGGCTTTTCAGGGCTTT	58.470	47.619	0.00	0.00	33.62	3.51
3748	4429	1.806496	AAGGGCTTTTCAGGGCTTTT	58.194	45.000	0.00	0.00	0.00	2.27
3749	4430	1.806496	AGGGCTTTTCAGGGCTTTTT	58.194	45.000	0.00	0.00	0.00	1.94
3750	4431	2.970987	AGGGCTTTTCAGGGCTTTTTA	58.029	42.857	0.00	0.00	0.00	1.52
3751	4432	2.632996	AGGGCTTTTCAGGGCTTTTTAC	59.367	45.455	0.00	0.00	0.00	2.01
3752	4433	2.289444	GGGCTTTTCAGGGCTTTTTACC	60.289	50.000	0.00	0.00	0.00	2.85
3753	4434	2.367241	GGCTTTTCAGGGCTTTTTACCA	59.633	45.455	0.00	0.00	0.00	3.25
3754	4435	3.554960	GGCTTTTCAGGGCTTTTTACCAG	60.555	47.826	0.00	0.00	0.00	4.00
3755	4436	3.320826	GCTTTTCAGGGCTTTTTACCAGA	59.679	43.478	0.00	0.00	0.00	3.86
3756	4437	4.021104	GCTTTTCAGGGCTTTTTACCAGAT	60.021	41.667	0.00	0.00	0.00	2.90
3757	4438	5.467035	TTTTCAGGGCTTTTTACCAGATG	57.533	39.130	0.00	0.00	0.00	2.90
3758	4439	3.085952	TCAGGGCTTTTTACCAGATGG	57.914	47.619	0.00	0.00	42.17	3.51
3759	4440	2.102578	CAGGGCTTTTTACCAGATGGG	58.897	52.381	3.48	0.00	44.81	4.00
3760	4441	0.824109	GGGCTTTTTACCAGATGGGC	59.176	55.000	3.48	0.00	42.05	5.36
3761	4442	0.824109	GGCTTTTTACCAGATGGGCC	59.176	55.000	3.48	0.00	42.05	5.80
3762	4443	0.455815	GCTTTTTACCAGATGGGCCG	59.544	55.000	3.48	0.00	42.05	6.13
3763	4444	1.953311	GCTTTTTACCAGATGGGCCGA	60.953	52.381	3.48	0.00	42.05	5.54
3764	4445	2.017049	CTTTTTACCAGATGGGCCGAG	58.983	52.381	3.48	0.00	42.05	4.63
3765	4446	0.393808	TTTTACCAGATGGGCCGAGC	60.394	55.000	3.48	0.00	42.05	5.03
3766	4447	1.271840	TTTACCAGATGGGCCGAGCT	61.272	55.000	0.00	0.00	42.05	4.09
3767	4448	1.271840	TTACCAGATGGGCCGAGCTT	61.272	55.000	1.39	0.00	42.05	3.74
3768	4449	1.971505	TACCAGATGGGCCGAGCTTG	61.972	60.000	1.39	1.96	42.05	4.01
3769	4450	2.515523	CAGATGGGCCGAGCTTGG	60.516	66.667	16.53	16.53	0.00	3.61
3770	4451	3.801997	AGATGGGCCGAGCTTGGG	61.802	66.667	22.06	11.19	0.00	4.12
3791	4472	2.017049	CTTGAAAAGTAGGCCCGATGG	58.983	52.381	0.00	0.00	39.70	3.51
3792	4473	0.988832	TGAAAAGTAGGCCCGATGGT	59.011	50.000	0.00	0.00	0.00	3.55
3793	4474	2.189676	TGAAAAGTAGGCCCGATGGTA	58.810	47.619	0.00	0.00	0.00	3.25
3794	4475	2.169769	TGAAAAGTAGGCCCGATGGTAG	59.830	50.000	0.00	0.00	0.00	3.18
3795	4476	1.129058	AAAGTAGGCCCGATGGTAGG	58.871	55.000	0.00	0.00	0.00	3.18
3801	4482	4.256180	CCCGATGGTAGGGCCTGC	62.256	72.222	18.53	16.11	42.77	4.85
3802	4483	4.609018	CCGATGGTAGGGCCTGCG	62.609	72.222	18.53	11.54	38.35	5.18
3814	4495	2.253513	GCCTGCGCCTTAGTTTTCA	58.746	52.632	4.18	0.00	0.00	2.69
3815	4496	0.169009	GCCTGCGCCTTAGTTTTCAG	59.831	55.000	4.18	0.00	0.00	3.02
3816	4497	0.169009	CCTGCGCCTTAGTTTTCAGC	59.831	55.000	4.18	0.00	0.00	4.26
3817	4498	0.169009	CTGCGCCTTAGTTTTCAGCC	59.831	55.000	4.18	0.00	0.00	4.85
3818	4499	1.134694	GCGCCTTAGTTTTCAGCCG	59.865	57.895	0.00	0.00	0.00	5.52
3819	4500	1.574702	GCGCCTTAGTTTTCAGCCGT	61.575	55.000	0.00	0.00	0.00	5.68
3820	4501	0.165944	CGCCTTAGTTTTCAGCCGTG	59.834	55.000	0.00	0.00	0.00	4.94
3821	4502	0.521735	GCCTTAGTTTTCAGCCGTGG	59.478	55.000	0.00	0.00	0.00	4.94
3822	4503	1.165270	CCTTAGTTTTCAGCCGTGGG	58.835	55.000	0.00	0.00	0.00	4.61
3861	4542	2.364972	GCCCATGGCCAAGTATAGTT	57.635	50.000	10.96	0.00	44.06	2.24
3862	4543	1.956477	GCCCATGGCCAAGTATAGTTG	59.044	52.381	10.96	12.62	44.06	3.16
3863	4544	2.686715	GCCCATGGCCAAGTATAGTTGT	60.687	50.000	10.96	0.00	44.06	3.32
3864	4545	2.951642	CCCATGGCCAAGTATAGTTGTG	59.048	50.000	10.96	9.71	0.00	3.33
3865	4546	3.371487	CCCATGGCCAAGTATAGTTGTGA	60.371	47.826	10.96	3.33	0.00	3.58
3866	4547	3.627577	CCATGGCCAAGTATAGTTGTGAC	59.372	47.826	10.96	11.94	0.00	3.67
3867	4548	3.343941	TGGCCAAGTATAGTTGTGACC	57.656	47.619	17.14	15.12	0.00	4.02
3873	4554	1.404391	AGTATAGTTGTGACCGCCTCG	59.596	52.381	0.00	0.00	0.00	4.63
3895	4578	0.608035	GCGTTGAATGTCCCCTCCAA	60.608	55.000	0.00	0.00	0.00	3.53
3910	4593	3.966215	CAATCGGCGTTGGACACT	58.034	55.556	6.85	0.00	0.00	3.55
3913	4596	1.827399	AATCGGCGTTGGACACTCCT	61.827	55.000	6.85	0.00	37.46	3.69
3970	4653	4.424711	GGCTGGGTGGAATCGGCA	62.425	66.667	0.00	0.00	37.02	5.69
3971	4654	2.361104	GCTGGGTGGAATCGGCAA	60.361	61.111	0.00	0.00	35.49	4.52
3972	4655	2.700773	GCTGGGTGGAATCGGCAAC	61.701	63.158	0.00	0.00	35.49	4.17
4009	4703	0.322546	ATTTTGGCTCCCGGTCTGAC	60.323	55.000	0.00	0.00	0.00	3.51
4018	4712	1.507174	CCGGTCTGACGAGGAGAAC	59.493	63.158	13.55	0.00	35.47	3.01
4019	4713	1.241990	CCGGTCTGACGAGGAGAACA	61.242	60.000	13.55	0.00	35.47	3.18
4048	5272	1.227383	CGGGGGAAATGGAGGGAAG	59.773	63.158	0.00	0.00	0.00	3.46
4051	5275	1.596496	GGGGAAATGGAGGGAAGAGA	58.404	55.000	0.00	0.00	0.00	3.10
4052	5276	2.139382	GGGGAAATGGAGGGAAGAGAT	58.861	52.381	0.00	0.00	0.00	2.75
4053	5277	2.158549	GGGGAAATGGAGGGAAGAGATG	60.159	54.545	0.00	0.00	0.00	2.90
4075	5299	0.591236	CAAAACGGCGGGAATATGCG	60.591	55.000	13.24	0.00	0.00	4.73
4111	5335	2.358984	GGCCCCACGCGACTTTTA	60.359	61.111	15.93	0.00	38.94	1.52
4112	5336	2.396157	GGCCCCACGCGACTTTTAG	61.396	63.158	15.93	0.00	38.94	1.85
4118	5342	1.529438	CCACGCGACTTTTAGCTTCAA	59.471	47.619	15.93	0.00	0.00	2.69
4124	5348	1.877443	GACTTTTAGCTTCAACCGGCA	59.123	47.619	0.00	0.00	0.00	5.69
4177	5401	2.348620	GGGGTTCGCCGGTAGTTT	59.651	61.111	1.90	0.00	38.45	2.66
4180	5404	0.518636	GGGTTCGCCGGTAGTTTTTC	59.481	55.000	1.90	0.00	38.45	2.29
4190	5415	1.958579	GGTAGTTTTTCGGCCCAAACT	59.041	47.619	20.52	20.52	43.91	2.66
4192	5417	1.770294	AGTTTTTCGGCCCAAACTGA	58.230	45.000	17.53	0.00	40.87	3.41
4204	5429	3.123804	CCCAAACTGACGATAATCGAGG	58.876	50.000	0.00	0.00	43.74	4.63
4210	5435	2.550180	CTGACGATAATCGAGGAGCTGA	59.450	50.000	0.00	0.00	43.74	4.26
4213	5438	2.155279	CGATAATCGAGGAGCTGAGGA	58.845	52.381	0.00	0.00	43.74	3.71
4215	5440	1.309950	TAATCGAGGAGCTGAGGACG	58.690	55.000	0.00	0.00	0.00	4.79
4222	5447	2.673341	AGCTGAGGACGCGACTGA	60.673	61.111	15.93	3.50	0.00	3.41
4224	5449	2.202544	CTGAGGACGCGACTGAGC	60.203	66.667	15.93	0.00	0.00	4.26
4226	5451	3.749064	GAGGACGCGACTGAGCCA	61.749	66.667	15.93	0.00	0.00	4.75
4233	5458	1.069227	ACGCGACTGAGCCAATTTTTC	60.069	47.619	15.93	0.00	0.00	2.29
4240	5465	3.178592	GCCAATTTTTCGGCGCCG	61.179	61.111	42.13	42.13	38.82	6.46
4243	5468	3.370231	AATTTTTCGGCGCCGGCT	61.370	55.556	44.95	23.71	40.25	5.52
4251	5476	2.791927	GGCGCCGGCTCTAAAAAG	59.208	61.111	26.68	7.15	39.81	2.27
4252	5477	2.761195	GGCGCCGGCTCTAAAAAGG	61.761	63.158	26.68	6.32	39.81	3.11
4253	5478	2.791927	CGCCGGCTCTAAAAAGGC	59.208	61.111	26.68	0.00	44.00	4.35
4257	5482	2.791927	GGCTCTAAAAAGGCGCCG	59.208	61.111	23.20	5.45	31.64	6.46
4258	5483	2.038837	GGCTCTAAAAAGGCGCCGT	61.039	57.895	23.20	16.90	31.64	5.68
4300	5528	2.126888	CGAAAGCCATTGCGCGTT	60.127	55.556	8.43	0.00	44.33	4.84
4301	5529	1.133664	CGAAAGCCATTGCGCGTTA	59.866	52.632	8.43	0.00	44.33	3.18
4302	5530	0.857311	CGAAAGCCATTGCGCGTTAG	60.857	55.000	8.43	0.00	44.33	2.34
4303	5531	1.133946	GAAAGCCATTGCGCGTTAGC	61.134	55.000	8.43	3.17	44.33	3.09
4315	5543	3.198680	CGTTAGCGCATCCGTTTTC	57.801	52.632	11.47	0.00	36.67	2.29
4316	5544	0.719465	CGTTAGCGCATCCGTTTTCT	59.281	50.000	11.47	0.00	36.67	2.52
4317	5545	1.127951	CGTTAGCGCATCCGTTTTCTT	59.872	47.619	11.47	0.00	36.67	2.52
4318	5546	2.505866	GTTAGCGCATCCGTTTTCTTG	58.494	47.619	11.47	0.00	36.67	3.02
4319	5547	0.446222	TAGCGCATCCGTTTTCTTGC	59.554	50.000	11.47	0.00	36.67	4.01
4320	5548	1.210155	GCGCATCCGTTTTCTTGCT	59.790	52.632	0.30	0.00	36.67	3.91
4321	5549	0.387239	GCGCATCCGTTTTCTTGCTT	60.387	50.000	0.30	0.00	36.67	3.91
4322	5550	1.330306	CGCATCCGTTTTCTTGCTTG	58.670	50.000	0.00	0.00	32.97	4.01
4323	5551	1.069296	CGCATCCGTTTTCTTGCTTGA	60.069	47.619	0.00	0.00	32.97	3.02
4324	5552	2.414559	CGCATCCGTTTTCTTGCTTGAT	60.415	45.455	0.00	0.00	32.97	2.57
4325	5553	3.578688	GCATCCGTTTTCTTGCTTGATT	58.421	40.909	0.00	0.00	32.41	2.57
4326	5554	3.989817	GCATCCGTTTTCTTGCTTGATTT	59.010	39.130	0.00	0.00	32.41	2.17
4327	5555	4.448732	GCATCCGTTTTCTTGCTTGATTTT	59.551	37.500	0.00	0.00	32.41	1.82
4328	5556	5.050159	GCATCCGTTTTCTTGCTTGATTTTT	60.050	36.000	0.00	0.00	32.41	1.94
4329	5557	6.145371	GCATCCGTTTTCTTGCTTGATTTTTA	59.855	34.615	0.00	0.00	32.41	1.52
4330	5558	7.148590	GCATCCGTTTTCTTGCTTGATTTTTAT	60.149	33.333	0.00	0.00	32.41	1.40
4331	5559	9.352784	CATCCGTTTTCTTGCTTGATTTTTATA	57.647	29.630	0.00	0.00	0.00	0.98
4332	5560	8.736751	TCCGTTTTCTTGCTTGATTTTTATAC	57.263	30.769	0.00	0.00	0.00	1.47
4333	5561	7.535940	TCCGTTTTCTTGCTTGATTTTTATACG	59.464	33.333	0.00	0.00	0.00	3.06
4334	5562	7.535940	CCGTTTTCTTGCTTGATTTTTATACGA	59.464	33.333	0.00	0.00	0.00	3.43
4335	5563	9.061610	CGTTTTCTTGCTTGATTTTTATACGAT	57.938	29.630	0.00	0.00	0.00	3.73
4358	5586	2.349438	TTTTGAGCAACTAGCGCGAAAG	60.349	45.455	12.10	8.68	46.97	2.62
4384	5612	3.327626	TGCGCGAACAGGAAACTAATTA	58.672	40.909	12.10	0.00	40.21	1.40
4474	5702	2.634600	CCTCTCCGGTAGATCTATCCG	58.365	57.143	24.88	24.88	43.30	4.18
4610	8240	4.107029	CCTATCCGGGGCATACGA	57.893	61.111	0.00	0.00	0.00	3.43
4736	8366	1.214673	TCGTGGGTACTGCTCTCCTAT	59.785	52.381	0.00	0.00	0.00	2.57
4798	8428	1.377366	CTTAGCCTCGAGCCTCGTCA	61.377	60.000	14.64	0.00	45.47	4.35
4826	8463	5.235616	ACTTTGGTGCATATTTCGGTATACG	59.764	40.000	0.00	0.00	46.11	3.06
4840	8477	3.059325	CGGTATACGGTAGTGCTAGTCAC	60.059	52.174	8.67	8.67	41.65	3.67
4913	8564	6.580041	CAGTTCATTTCCTCATTTGTTCTTCG	59.420	38.462	0.00	0.00	0.00	3.79
4914	8565	6.263168	AGTTCATTTCCTCATTTGTTCTTCGT	59.737	34.615	0.00	0.00	0.00	3.85
4917	8568	5.607119	TTTCCTCATTTGTTCTTCGTAGC	57.393	39.130	0.00	0.00	0.00	3.58
4918	8569	4.265904	TCCTCATTTGTTCTTCGTAGCA	57.734	40.909	0.00	0.00	0.00	3.49
4919	8570	4.245660	TCCTCATTTGTTCTTCGTAGCAG	58.754	43.478	0.00	0.00	0.00	4.24
4920	8571	3.997021	CCTCATTTGTTCTTCGTAGCAGT	59.003	43.478	0.00	0.00	0.00	4.40
4922	8573	5.062308	CCTCATTTGTTCTTCGTAGCAGTAC	59.938	44.000	0.00	0.00	0.00	2.73
4924	8575	5.862323	TCATTTGTTCTTCGTAGCAGTACTC	59.138	40.000	0.00	0.00	0.00	2.59
4925	8576	5.449107	TTTGTTCTTCGTAGCAGTACTCT	57.551	39.130	0.00	0.00	0.00	3.24
4926	8577	4.421033	TGTTCTTCGTAGCAGTACTCTG	57.579	45.455	0.00	0.00	43.87	3.35
4927	8578	3.819337	TGTTCTTCGTAGCAGTACTCTGT	59.181	43.478	0.00	0.00	43.05	3.41
4928	8579	4.083431	TGTTCTTCGTAGCAGTACTCTGTC	60.083	45.833	0.00	0.00	43.05	3.51
4929	8580	3.008330	TCTTCGTAGCAGTACTCTGTCC	58.992	50.000	0.00	0.00	43.05	4.02
4930	8581	2.783609	TCGTAGCAGTACTCTGTCCT	57.216	50.000	0.00	0.00	43.05	3.85
4931	8582	3.069079	TCGTAGCAGTACTCTGTCCTT	57.931	47.619	0.00	0.00	43.05	3.36
4932	8583	3.008330	TCGTAGCAGTACTCTGTCCTTC	58.992	50.000	0.00	0.00	43.05	3.46
4933	8584	2.747989	CGTAGCAGTACTCTGTCCTTCA	59.252	50.000	0.00	0.00	43.05	3.02
4934	8585	3.190744	CGTAGCAGTACTCTGTCCTTCAA	59.809	47.826	0.00	0.00	43.05	2.69
4935	8586	4.321008	CGTAGCAGTACTCTGTCCTTCAAA	60.321	45.833	0.00	0.00	43.05	2.69
4936	8587	4.264460	AGCAGTACTCTGTCCTTCAAAG	57.736	45.455	0.00	0.00	43.05	2.77
4937	8588	3.643792	AGCAGTACTCTGTCCTTCAAAGT	59.356	43.478	0.00	0.00	43.05	2.66
4938	8589	4.833380	AGCAGTACTCTGTCCTTCAAAGTA	59.167	41.667	0.00	0.00	43.05	2.24
4939	8590	4.924462	GCAGTACTCTGTCCTTCAAAGTAC	59.076	45.833	0.00	4.05	45.67	2.73
4944	8595	3.835395	CTCTGTCCTTCAAAGTACTCCCT	59.165	47.826	0.00	0.00	0.00	4.20
4950	8601	3.586892	CTTCAAAGTACTCCCTCCGTTC	58.413	50.000	0.00	0.00	0.00	3.95
4951	8602	1.542915	TCAAAGTACTCCCTCCGTTCG	59.457	52.381	0.00	0.00	0.00	3.95
4952	8603	0.893447	AAAGTACTCCCTCCGTTCGG	59.107	55.000	4.74	4.74	0.00	4.30
4960	8611	2.167900	CTCCCTCCGTTCGGAATTACTT	59.832	50.000	14.79	0.00	33.41	2.24
4962	8613	1.664151	CCTCCGTTCGGAATTACTTGC	59.336	52.381	14.79	0.00	33.41	4.01
4965	8616	0.247537	CGTTCGGAATTACTTGCCGC	60.248	55.000	0.00	0.00	44.45	6.53
4966	8617	0.800012	GTTCGGAATTACTTGCCGCA	59.200	50.000	0.00	0.00	44.45	5.69
4967	8618	1.083489	TTCGGAATTACTTGCCGCAG	58.917	50.000	0.00	0.00	44.45	5.18
4968	8619	0.248012	TCGGAATTACTTGCCGCAGA	59.752	50.000	0.00	0.00	44.45	4.26
4969	8620	1.083489	CGGAATTACTTGCCGCAGAA	58.917	50.000	0.00	0.00	38.46	3.02
4970	8621	1.466950	CGGAATTACTTGCCGCAGAAA	59.533	47.619	0.00	0.00	38.46	2.52
4971	8622	2.097466	CGGAATTACTTGCCGCAGAAAT	59.903	45.455	0.00	0.00	38.46	2.17
4972	8623	3.438360	GGAATTACTTGCCGCAGAAATG	58.562	45.455	0.00	0.00	0.00	2.32
4973	8624	3.128589	GGAATTACTTGCCGCAGAAATGA	59.871	43.478	0.00	0.00	0.00	2.57
4974	8625	4.380444	GGAATTACTTGCCGCAGAAATGAA	60.380	41.667	0.00	0.00	0.00	2.57
4975	8626	4.989279	ATTACTTGCCGCAGAAATGAAT	57.011	36.364	0.00	0.00	0.00	2.57
4976	8627	2.642139	ACTTGCCGCAGAAATGAATG	57.358	45.000	0.00	0.00	0.00	2.67
4977	8628	1.888512	ACTTGCCGCAGAAATGAATGT	59.111	42.857	0.00	0.00	0.00	2.71
4978	8629	3.081061	ACTTGCCGCAGAAATGAATGTA	58.919	40.909	0.00	0.00	0.00	2.29
4979	8630	3.696051	ACTTGCCGCAGAAATGAATGTAT	59.304	39.130	0.00	0.00	0.00	2.29
4980	8631	3.969117	TGCCGCAGAAATGAATGTATC	57.031	42.857	0.00	0.00	0.00	2.24
4981	8632	3.544684	TGCCGCAGAAATGAATGTATCT	58.455	40.909	0.00	0.00	0.00	1.98
4982	8633	4.702831	TGCCGCAGAAATGAATGTATCTA	58.297	39.130	0.00	0.00	0.00	1.98
4983	8634	4.751600	TGCCGCAGAAATGAATGTATCTAG	59.248	41.667	0.00	0.00	0.00	2.43
4984	8635	4.991056	GCCGCAGAAATGAATGTATCTAGA	59.009	41.667	0.00	0.00	0.00	2.43
4985	8636	5.641209	GCCGCAGAAATGAATGTATCTAGAT	59.359	40.000	10.73	10.73	0.00	1.98
4986	8637	6.813649	GCCGCAGAAATGAATGTATCTAGATA	59.186	38.462	8.44	8.44	0.00	1.98
4987	8638	7.493971	GCCGCAGAAATGAATGTATCTAGATAT	59.506	37.037	15.43	0.00	0.00	1.63
5016	8667	9.893634	TTTAGTTTTAGATACATCCATTTCCGA	57.106	29.630	0.00	0.00	0.00	4.55
5017	8668	9.542462	TTAGTTTTAGATACATCCATTTCCGAG	57.458	33.333	0.00	0.00	0.00	4.63
5018	8669	7.792032	AGTTTTAGATACATCCATTTCCGAGA	58.208	34.615	0.00	0.00	0.00	4.04
5019	8670	7.711339	AGTTTTAGATACATCCATTTCCGAGAC	59.289	37.037	0.00	0.00	0.00	3.36
5020	8671	6.724893	TTAGATACATCCATTTCCGAGACA	57.275	37.500	0.00	0.00	0.00	3.41
5021	8672	5.614324	AGATACATCCATTTCCGAGACAA	57.386	39.130	0.00	0.00	0.00	3.18
5022	8673	5.605534	AGATACATCCATTTCCGAGACAAG	58.394	41.667	0.00	0.00	0.00	3.16
5023	8674	3.703001	ACATCCATTTCCGAGACAAGT	57.297	42.857	0.00	0.00	0.00	3.16
5024	8675	4.819105	ACATCCATTTCCGAGACAAGTA	57.181	40.909	0.00	0.00	0.00	2.24
5025	8676	5.160607	ACATCCATTTCCGAGACAAGTAA	57.839	39.130	0.00	0.00	0.00	2.24
5026	8677	5.745227	ACATCCATTTCCGAGACAAGTAAT	58.255	37.500	0.00	0.00	0.00	1.89
5027	8678	6.180472	ACATCCATTTCCGAGACAAGTAATT	58.820	36.000	0.00	0.00	0.00	1.40
5028	8679	6.316390	ACATCCATTTCCGAGACAAGTAATTC	59.684	38.462	0.00	0.00	0.00	2.17
5029	8680	5.183228	TCCATTTCCGAGACAAGTAATTCC	58.817	41.667	0.00	0.00	0.00	3.01
5030	8681	4.034048	CCATTTCCGAGACAAGTAATTCCG	59.966	45.833	0.00	0.00	0.00	4.30
5031	8682	4.524316	TTTCCGAGACAAGTAATTCCGA	57.476	40.909	0.00	0.00	0.00	4.55
5032	8683	4.524316	TTCCGAGACAAGTAATTCCGAA	57.476	40.909	0.00	0.00	0.00	4.30
5033	8684	3.841643	TCCGAGACAAGTAATTCCGAAC	58.158	45.455	0.00	0.00	0.00	3.95
5034	8685	2.597305	CCGAGACAAGTAATTCCGAACG	59.403	50.000	0.00	0.00	0.00	3.95
5035	8686	2.597305	CGAGACAAGTAATTCCGAACGG	59.403	50.000	6.94	6.94	0.00	4.44
5036	8687	3.671433	CGAGACAAGTAATTCCGAACGGA	60.671	47.826	12.04	12.04	43.52	4.69
5037	8688	3.846360	AGACAAGTAATTCCGAACGGAG	58.154	45.455	15.34	5.60	46.06	4.63
5038	8689	2.928116	GACAAGTAATTCCGAACGGAGG	59.072	50.000	15.34	4.52	46.06	4.30
5039	8690	2.277084	CAAGTAATTCCGAACGGAGGG	58.723	52.381	15.34	0.00	46.06	4.30
5040	8691	1.856629	AGTAATTCCGAACGGAGGGA	58.143	50.000	15.34	2.49	46.06	4.20
5041	8692	1.755380	AGTAATTCCGAACGGAGGGAG	59.245	52.381	15.34	0.00	46.06	4.30
5042	8693	1.479730	GTAATTCCGAACGGAGGGAGT	59.520	52.381	15.34	4.12	46.06	3.85
5043	8694	1.856629	AATTCCGAACGGAGGGAGTA	58.143	50.000	15.34	1.05	46.06	2.59
5044	8695	2.083628	ATTCCGAACGGAGGGAGTAT	57.916	50.000	15.34	3.38	46.06	2.12
5045	8696	2.734755	TTCCGAACGGAGGGAGTATA	57.265	50.000	15.34	0.00	46.06	1.47
5046	8697	2.734755	TCCGAACGGAGGGAGTATAA	57.265	50.000	12.04	0.00	39.76	0.98
5047	8698	2.579873	TCCGAACGGAGGGAGTATAAG	58.420	52.381	12.04	0.00	39.76	1.73
5048	8699	2.092212	TCCGAACGGAGGGAGTATAAGT	60.092	50.000	12.04	0.00	39.76	2.24
5049	8700	2.692041	CCGAACGGAGGGAGTATAAGTT	59.308	50.000	7.53	0.00	37.50	2.66
5050	8701	3.885297	CCGAACGGAGGGAGTATAAGTTA	59.115	47.826	7.53	0.00	37.50	2.24
5083	8734	2.603560	CAGTAGCGCTTACTTTACAGCC	59.396	50.000	18.68	0.00	40.68	4.85
5504	9174	5.120399	ACTTGTACGGTTGTTCATCTCAAA	58.880	37.500	0.00	0.00	0.00	2.69
5600	9270	6.586082	CCAAAGTTCAAATCGGTATGAAAAGG	59.414	38.462	0.00	0.00	37.31	3.11
5709	9381	4.623932	AAAATGCACAGAGTGACCTAGA	57.376	40.909	0.58	0.00	35.23	2.43
5710	9382	3.883830	AATGCACAGAGTGACCTAGAG	57.116	47.619	0.58	0.00	35.23	2.43
5711	9383	0.891373	TGCACAGAGTGACCTAGAGC	59.109	55.000	0.58	0.00	35.23	4.09
5759	9432	1.133598	TGATCCGTAGCGTCAATTCGT	59.866	47.619	0.00	0.00	0.00	3.85
5761	9434	0.521867	TCCGTAGCGTCAATTCGTCG	60.522	55.000	0.00	0.00	0.00	5.12
5784	9457	0.798776	GCTAAGCAACGACAGCACAT	59.201	50.000	0.00	0.00	34.13	3.21
5789	9462	1.198408	AGCAACGACAGCACATTGATG	59.802	47.619	0.00	0.00	40.09	3.07
5811	9484	5.057149	TGCTCAAGTCACTTCCTACTTTTC	58.943	41.667	0.00	0.00	33.72	2.29
5818	9491	3.518303	TCACTTCCTACTTTTCCTAGGGC	59.482	47.826	9.46	0.00	32.79	5.19
5819	9492	3.263425	CACTTCCTACTTTTCCTAGGGCA	59.737	47.826	9.46	0.00	32.79	5.36
5823	9496	4.028825	TCCTACTTTTCCTAGGGCAGTAC	58.971	47.826	9.46	0.00	32.79	2.73
5824	9497	4.031611	CCTACTTTTCCTAGGGCAGTACT	58.968	47.826	9.46	0.00	0.00	2.73
5825	9498	3.983044	ACTTTTCCTAGGGCAGTACTG	57.017	47.619	18.93	18.93	0.00	2.74
5826	9499	3.248888	ACTTTTCCTAGGGCAGTACTGT	58.751	45.455	23.44	7.20	0.00	3.55
5827	9500	3.008049	ACTTTTCCTAGGGCAGTACTGTG	59.992	47.826	23.44	9.24	0.00	3.66
5828	9501	2.320681	TTCCTAGGGCAGTACTGTGT	57.679	50.000	23.44	11.16	0.00	3.72
5829	9502	1.557099	TCCTAGGGCAGTACTGTGTG	58.443	55.000	23.44	9.87	0.00	3.82
5833	9506	0.250467	AGGGCAGTACTGTGTGCTTG	60.250	55.000	23.44	0.00	39.76	4.01
5857	9530	4.815533	AGCATAGCATGTACTCCTATGG	57.184	45.455	19.81	9.40	39.05	2.74
5867	9540	6.041069	GCATGTACTCCTATGGAAGTACTTCT	59.959	42.308	29.66	16.88	37.30	2.85
5889	9562	2.579873	GTCATAGTCCATGCCATTGCT	58.420	47.619	0.00	0.00	38.71	3.91
5890	9563	2.954318	GTCATAGTCCATGCCATTGCTT	59.046	45.455	0.00	0.00	38.71	3.91
5891	9564	4.136796	GTCATAGTCCATGCCATTGCTTA	58.863	43.478	0.00	0.00	38.71	3.09
5892	9565	4.580167	GTCATAGTCCATGCCATTGCTTAA	59.420	41.667	0.00	0.00	38.71	1.85
5930	9610	4.922692	CACTTCTCTGCTAACTTCTCTGTG	59.077	45.833	0.00	0.00	0.00	3.66
5998	9678	2.654749	TCATGGACCGCGATATGATC	57.345	50.000	8.23	0.00	0.00	2.92
6052	9732	0.977108	AAATGACCCCGGCCTACGTA	60.977	55.000	0.00	0.00	42.24	3.57
6080	9760	4.876107	TCTCGACTCTGGCAATTTTTATCC	59.124	41.667	0.00	0.00	0.00	2.59
6232	9912	5.106277	TGGTAGCTCGTAGACATATATGCAC	60.106	44.000	12.79	7.42	0.00	4.57
6324	10071	5.048294	GTGCCTCATATTTGCATCATGATGA	60.048	40.000	34.65	17.54	41.20	2.92
6325	10072	5.714806	TGCCTCATATTTGCATCATGATGAT	59.285	36.000	34.65	22.44	41.20	2.45
6355	10102	2.164219	CACAATAACACCCACATGCTCC	59.836	50.000	0.00	0.00	0.00	4.70
6441	10194	2.043652	CCATGGGGCTTCACCTGG	60.044	66.667	2.85	0.00	39.10	4.45
6442	10195	2.765969	CATGGGGCTTCACCTGGT	59.234	61.111	0.00	0.00	39.10	4.00
6443	10196	1.570857	CCATGGGGCTTCACCTGGTA	61.571	60.000	2.85	0.00	39.10	3.25
6569	10322	1.949525	CAGACCCAACTTGTGAACCAG	59.050	52.381	0.00	0.00	0.00	4.00
6583	10336	7.719633	ACTTGTGAACCAGTTAATTGTATCAGT	59.280	33.333	0.00	0.00	0.00	3.41
6846	10606	5.362556	TTCTTGCAGCTGTCTACAAATTC	57.637	39.130	16.64	0.00	0.00	2.17
6914	10674	7.444558	TTTTTCTCTCGTTTGTTGTATTTGC	57.555	32.000	0.00	0.00	0.00	3.68
6967	10727	0.173708	CTACCCTGTCGGCAGTTCTC	59.826	60.000	17.16	0.00	41.02	2.87
6969	10729	2.636412	CCCTGTCGGCAGTTCTCGA	61.636	63.158	17.16	0.00	41.02	4.04
6973	10733	0.318699	TGTCGGCAGTTCTCGAGTTG	60.319	55.000	13.13	10.67	36.00	3.16
7002	10762	1.581934	TCACACAGCTTTCTCGTTGG	58.418	50.000	0.00	0.00	0.00	3.77
7042	10802	2.979240	AGATTCTCGGTTGCTTTCCTC	58.021	47.619	0.00	0.00	0.00	3.71
7065	10825	3.442625	TCGTAGACACAGTACATCTTGGG	59.557	47.826	0.00	0.00	0.00	4.12
7066	10826	3.192844	CGTAGACACAGTACATCTTGGGT	59.807	47.826	0.00	0.00	0.00	4.51
7071	10831	5.531287	AGACACAGTACATCTTGGGTTTTTC	59.469	40.000	0.00	0.00	0.00	2.29
7076	10836	7.435192	CACAGTACATCTTGGGTTTTTCTTTTC	59.565	37.037	0.00	0.00	0.00	2.29
7098	10858	2.288579	TGAACCGTGACACAGTACATCC	60.289	50.000	6.37	0.00	0.00	3.51
7104	10864	3.326747	GTGACACAGTACATCCTGGTTC	58.673	50.000	0.00	0.00	36.75	3.62
7142	10902	7.202016	TCACAGCTCGAGTCATTTTAATTTT	57.798	32.000	15.13	0.00	0.00	1.82
7176	10936	5.941733	TCATTTGAAACGCTACTACTCGTA	58.058	37.500	0.00	0.00	38.03	3.43
7177	10937	5.796935	TCATTTGAAACGCTACTACTCGTAC	59.203	40.000	0.00	0.00	38.03	3.67
7178	10938	5.362556	TTTGAAACGCTACTACTCGTACT	57.637	39.130	0.00	0.00	38.03	2.73
7179	10939	4.590400	TGAAACGCTACTACTCGTACTC	57.410	45.455	0.00	0.00	38.03	2.59
7180	10940	3.061295	TGAAACGCTACTACTCGTACTCG	59.939	47.826	0.00	0.00	38.03	4.18
7181	10941	2.285827	ACGCTACTACTCGTACTCGT	57.714	50.000	0.00	0.00	37.14	4.18
7182	10942	2.611518	ACGCTACTACTCGTACTCGTT	58.388	47.619	0.00	0.00	37.14	3.85
7186	10946	3.484886	GCTACTACTCGTACTCGTTGTGG	60.485	52.174	8.10	6.79	38.33	4.17
7198	10958	2.124085	TTGTGGATCGGAGGGGGT	59.876	61.111	0.00	0.00	0.00	4.95
7199	10959	0.979187	GTTGTGGATCGGAGGGGGTA	60.979	60.000	0.00	0.00	0.00	3.69
7200	10960	0.979187	TTGTGGATCGGAGGGGGTAC	60.979	60.000	0.00	0.00	0.00	3.34
7201	10961	1.382146	GTGGATCGGAGGGGGTACA	60.382	63.158	0.00	0.00	0.00	2.90
7202	10962	0.979187	GTGGATCGGAGGGGGTACAA	60.979	60.000	0.00	0.00	0.00	2.41
7203	10963	0.689745	TGGATCGGAGGGGGTACAAG	60.690	60.000	0.00	0.00	0.00	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	3.651423	AGGTTACCTCTTAAGTTGCCAGT	59.349	43.478	0.00	0.00	0.00	4.00
49	50	3.118592	GGTGGTCCATTCACTCTCTAAGG	60.119	52.174	0.00	0.00	35.61	2.69
52	53	3.099905	CTGGTGGTCCATTCACTCTCTA	58.900	50.000	0.00	0.00	43.43	2.43
57	58	0.326264	GAGCTGGTGGTCCATTCACT	59.674	55.000	0.00	0.00	43.43	3.41
368	375	1.206831	GAGGAGTTTGCGCGGTTTC	59.793	57.895	8.83	0.00	0.00	2.78
405	412	5.470098	TCGTTTTCTCTCTTGGATTTTCTGG	59.530	40.000	0.00	0.00	0.00	3.86
444	451	0.035439	GGATCCAACTCCCTGCGAAA	60.035	55.000	6.95	0.00	0.00	3.46
498	505	1.767692	GAGACTTCCCCTTTGCCCA	59.232	57.895	0.00	0.00	0.00	5.36
501	508	2.041115	GCCGAGACTTCCCCTTTGC	61.041	63.158	0.00	0.00	0.00	3.68
503	510	2.168666	GACGCCGAGACTTCCCCTTT	62.169	60.000	0.00	0.00	0.00	3.11
504	511	2.603776	ACGCCGAGACTTCCCCTT	60.604	61.111	0.00	0.00	0.00	3.95
505	512	3.069318	GACGCCGAGACTTCCCCT	61.069	66.667	0.00	0.00	0.00	4.79
620	627	2.680352	ATCGGGATCGGGATCGGG	60.680	66.667	2.80	0.00	38.69	5.14
625	632	1.074775	AAAGGGATCGGGATCGGGA	60.075	57.895	2.80	0.00	38.69	5.14
626	633	1.371558	GAAAGGGATCGGGATCGGG	59.628	63.158	2.80	0.00	38.69	5.14
627	634	1.371558	GGAAAGGGATCGGGATCGG	59.628	63.158	2.80	0.00	38.69	4.18
628	635	1.371558	GGGAAAGGGATCGGGATCG	59.628	63.158	2.80	0.00	38.69	3.69
629	636	1.371558	CGGGAAAGGGATCGGGATC	59.628	63.158	0.00	0.00	37.11	3.36
630	637	2.147387	CCGGGAAAGGGATCGGGAT	61.147	63.158	0.00	0.00	38.93	3.85
631	638	2.766651	CCGGGAAAGGGATCGGGA	60.767	66.667	0.00	0.00	38.93	5.14
632	639	3.087906	ACCGGGAAAGGGATCGGG	61.088	66.667	6.32	0.00	45.97	5.14
633	640	2.189521	CACCGGGAAAGGGATCGG	59.810	66.667	6.32	0.00	46.95	4.18
634	641	1.153429	GACACCGGGAAAGGGATCG	60.153	63.158	6.32	0.00	35.02	3.69
635	642	1.223763	GGACACCGGGAAAGGGATC	59.776	63.158	6.32	0.00	35.02	3.36
636	643	2.306384	GGGACACCGGGAAAGGGAT	61.306	63.158	6.32	0.00	35.02	3.85
800	807	3.072468	CGAGGGCCCGTAAGACCA	61.072	66.667	18.44	0.00	43.02	4.02
802	809	1.141234	CTTCGAGGGCCCGTAAGAC	59.859	63.158	22.43	9.25	43.02	3.01
822	829	4.082733	GCCAACCCAAATCTTCTACACTTC	60.083	45.833	0.00	0.00	0.00	3.01
988	1008	2.042831	GCTGCATCCTCTTTGCCGT	61.043	57.895	0.00	0.00	39.39	5.68
1101	1121	4.389576	GAGTTGCCCGCGTTGCAG	62.390	66.667	18.10	0.00	40.35	4.41
1137	1157	4.933064	CTAAGCTCGCCGCCCTCG	62.933	72.222	0.00	0.00	40.39	4.63
1265	1285	0.848053	AGAACGGGGTGGGAAAAGAA	59.152	50.000	0.00	0.00	0.00	2.52
1266	1286	0.399075	GAGAACGGGGTGGGAAAAGA	59.601	55.000	0.00	0.00	0.00	2.52
1296	1316	2.142292	AAACCGGAGAGGCAGGCAAT	62.142	55.000	9.46	0.00	46.52	3.56
1422	1442	5.120053	GCCCACTAAATTTTCATTCCAAACG	59.880	40.000	0.00	0.00	0.00	3.60
1471	1498	8.660373	GTTGTTTCAGAGTATTGAAGATCGATT	58.340	33.333	0.00	0.00	38.25	3.34
1475	1502	9.604626	CAAAGTTGTTTCAGAGTATTGAAGATC	57.395	33.333	0.00	0.00	38.25	2.75
1499	1531	3.432467	CGGTATACCCAAGTATGCACCAA	60.432	47.826	16.47	0.00	41.78	3.67
1512	1593	1.597742	TCGAGCACTACGGTATACCC	58.402	55.000	16.47	0.89	0.00	3.69
1513	1594	2.095364	CCATCGAGCACTACGGTATACC	60.095	54.545	12.27	12.27	0.00	2.73
1520	1601	1.550065	CTGTTCCATCGAGCACTACG	58.450	55.000	0.00	0.00	0.00	3.51
1549	2078	1.676746	CAATGAGTGGGGATGCTCTG	58.323	55.000	0.00	0.00	0.00	3.35
1627	2158	3.917760	GGACTGGATCGCCCCGAG	61.918	72.222	0.00	0.00	39.91	4.63
1721	2257	2.019249	CATGATGATGGCCGAACTTGT	58.981	47.619	0.00	0.00	0.00	3.16
1722	2258	1.268896	GCATGATGATGGCCGAACTTG	60.269	52.381	0.00	0.00	0.00	3.16
1723	2259	1.027357	GCATGATGATGGCCGAACTT	58.973	50.000	0.00	0.00	0.00	2.66
1731	2267	0.309922	GAACTGCGGCATGATGATGG	59.690	55.000	1.75	0.00	0.00	3.51
1775	2346	6.153212	CGAACTTTCGTGTATGTTTGATCT	57.847	37.500	3.13	0.00	45.09	2.75
1835	2430	4.699522	AGGAGCCCGCCGTTTGAC	62.700	66.667	0.00	0.00	0.00	3.18
1930	2537	4.207281	CCCGAGCGATGAAGCGGA	62.207	66.667	0.00	0.00	46.29	5.54
2064	2674	3.938653	GGCAGACATGTCGACGATA	57.061	52.632	19.85	0.00	34.09	2.92
2216	2827	0.179156	GTATCGTCGACGCCAAGGAA	60.179	55.000	32.19	14.36	39.60	3.36
2218	2829	1.138036	TGTATCGTCGACGCCAAGG	59.862	57.895	32.19	6.30	39.60	3.61
2234	2845	0.174389	AAGCATCGATCGAGCAGTGT	59.826	50.000	28.66	10.69	0.00	3.55
2251	2862	3.461843	GCTGTCAAACGGCTTCAAG	57.538	52.632	3.67	0.00	46.62	3.02
2288	2899	0.601046	GCAACAAAAGAGCCAAGGCC	60.601	55.000	7.62	0.00	43.17	5.19
2339	2950	1.110518	TGTACAGGTCAGACGTGCCA	61.111	55.000	20.83	15.26	37.49	4.92
2352	2963	3.012518	CCAAGCCCAAGAAGATGTACAG	58.987	50.000	0.33	0.00	0.00	2.74
2368	2979	4.400961	AGCTCACCCTCGCCAAGC	62.401	66.667	0.00	0.00	0.00	4.01
2478	3089	2.418976	CTGTGCAGATGGTTCAGATGTG	59.581	50.000	0.00	0.00	0.00	3.21
2500	3111	0.937699	CGCCGACACTTGTTCTTCGA	60.938	55.000	0.00	0.00	33.20	3.71
2522	3134	3.963665	TCAGTTCTTTTTCGCCATTGTG	58.036	40.909	0.00	0.00	0.00	3.33
2523	3135	3.550842	GCTCAGTTCTTTTTCGCCATTGT	60.551	43.478	0.00	0.00	0.00	2.71
2524	3136	2.982470	GCTCAGTTCTTTTTCGCCATTG	59.018	45.455	0.00	0.00	0.00	2.82
2525	3137	2.029918	GGCTCAGTTCTTTTTCGCCATT	60.030	45.455	0.00	0.00	36.16	3.16
2531	3143	0.110192	CGCCGGCTCAGTTCTTTTTC	60.110	55.000	26.68	0.00	0.00	2.29
2565	3182	4.211502	GGCGCCAACATCATGGGC	62.212	66.667	24.80	0.17	44.27	5.36
2569	3186	2.270297	GAAAGCGGCGCCAACATCAT	62.270	55.000	30.40	3.74	0.00	2.45
2611	3228	2.354906	GCAACAAATGGCATGGGATTGA	60.355	45.455	14.71	0.00	0.00	2.57
2883	3502	1.645710	AAGGGAGAAAGAAGGAGCGA	58.354	50.000	0.00	0.00	0.00	4.93
2984	3621	3.338126	GACACGATGGACGCCGACT	62.338	63.158	0.00	0.00	46.94	4.18
3050	3699	0.173481	CATGGACGAGATCACCACGT	59.827	55.000	0.00	1.10	42.84	4.49
3112	3765	2.616330	CCTGTCGTTTGCGCATGGT	61.616	57.895	12.75	0.00	38.14	3.55
3115	3768	3.737172	GCCCTGTCGTTTGCGCAT	61.737	61.111	12.75	0.00	38.14	4.73
3154	3807	4.129737	GCGTACTCAGCCTCGCCA	62.130	66.667	0.00	0.00	42.33	5.69
3187	3840	1.602237	CGGCCTCAACACCCAGTAT	59.398	57.895	0.00	0.00	0.00	2.12
3427	4090	2.189499	GGATGATGAACCTGCCGCC	61.189	63.158	0.00	0.00	0.00	6.13
3429	4092	1.526917	GGGGATGATGAACCTGCCG	60.527	63.158	0.00	0.00	0.00	5.69
3430	4093	1.526917	CGGGGATGATGAACCTGCC	60.527	63.158	0.00	0.00	0.00	4.85
3432	4095	1.889105	CGCGGGGATGATGAACCTG	60.889	63.158	0.00	0.00	0.00	4.00
3434	4097	3.279875	GCGCGGGGATGATGAACC	61.280	66.667	8.83	0.00	0.00	3.62
3528	4209	1.195115	GATGGCCAGGACTAGTCACA	58.805	55.000	23.91	13.89	0.00	3.58
3535	4216	2.765807	CCGGAGATGGCCAGGACT	60.766	66.667	13.05	10.74	0.00	3.85
3576	4257	1.828224	CTGGATTTTAGGGCCGGGC	60.828	63.158	22.00	22.00	0.00	6.13
3577	4258	1.152756	CCTGGATTTTAGGGCCGGG	60.153	63.158	2.18	0.00	41.55	5.73
3578	4259	4.579127	CCTGGATTTTAGGGCCGG	57.421	61.111	0.00	0.00	0.00	6.13
3583	4264	1.202940	GCCTAGGCCCTGGATTTTAGG	60.203	57.143	24.19	10.45	34.56	2.69
3584	4265	2.278332	GCCTAGGCCCTGGATTTTAG	57.722	55.000	24.19	0.33	34.56	1.85
3604	4285	3.136123	CACAGGCAAGCCCATCGG	61.136	66.667	7.62	0.00	36.58	4.18
3605	4286	3.136123	CCACAGGCAAGCCCATCG	61.136	66.667	7.62	0.00	36.58	3.84
3628	4309	0.600057	CTCAAAACTCAGGCCCAAGC	59.400	55.000	0.00	0.00	38.76	4.01
3629	4310	0.600057	GCTCAAAACTCAGGCCCAAG	59.400	55.000	0.00	0.00	0.00	3.61
3630	4311	0.827507	GGCTCAAAACTCAGGCCCAA	60.828	55.000	0.00	0.00	37.12	4.12
3631	4312	1.228552	GGCTCAAAACTCAGGCCCA	60.229	57.895	0.00	0.00	37.12	5.36
3632	4313	3.686760	GGCTCAAAACTCAGGCCC	58.313	61.111	0.00	0.00	37.12	5.80
3634	4315	0.813821	GATGGGCTCAAAACTCAGGC	59.186	55.000	0.00	0.00	34.44	4.85
3635	4316	2.205022	TGATGGGCTCAAAACTCAGG	57.795	50.000	0.00	0.00	0.00	3.86
3636	4317	3.349927	TGATGATGGGCTCAAAACTCAG	58.650	45.455	0.00	0.00	37.44	3.35
3637	4318	3.349927	CTGATGATGGGCTCAAAACTCA	58.650	45.455	0.00	0.00	37.44	3.41
3638	4319	2.686915	CCTGATGATGGGCTCAAAACTC	59.313	50.000	0.00	0.00	37.44	3.01
3639	4320	2.622452	CCCTGATGATGGGCTCAAAACT	60.622	50.000	0.00	0.00	37.44	2.66
3640	4321	1.753073	CCCTGATGATGGGCTCAAAAC	59.247	52.381	0.00	0.00	37.44	2.43
3641	4322	2.148446	CCCTGATGATGGGCTCAAAA	57.852	50.000	0.00	0.00	37.44	2.44
3642	4323	3.909587	CCCTGATGATGGGCTCAAA	57.090	52.632	0.00	0.00	37.44	2.69
3649	4330	1.150081	GTCCAGGCCCTGATGATGG	59.850	63.158	13.74	0.00	32.44	3.51
3650	4331	1.227764	CGTCCAGGCCCTGATGATG	60.228	63.158	13.74	3.44	32.44	3.07
3651	4332	2.446848	CCGTCCAGGCCCTGATGAT	61.447	63.158	13.74	0.00	32.44	2.45
3652	4333	3.083349	CCGTCCAGGCCCTGATGA	61.083	66.667	13.74	0.00	32.44	2.92
3653	4334	4.181010	CCCGTCCAGGCCCTGATG	62.181	72.222	13.74	3.93	39.21	3.07
3662	4343	4.351054	AAGCCCAAGCCCGTCCAG	62.351	66.667	0.00	0.00	41.25	3.86
3663	4344	4.659172	CAAGCCCAAGCCCGTCCA	62.659	66.667	0.00	0.00	41.25	4.02
3668	4349	1.050421	AATATGCCAAGCCCAAGCCC	61.050	55.000	0.00	0.00	41.25	5.19
3669	4350	0.105408	CAATATGCCAAGCCCAAGCC	59.895	55.000	0.00	0.00	41.25	4.35
3670	4351	0.105408	CCAATATGCCAAGCCCAAGC	59.895	55.000	0.00	0.00	40.32	4.01
3671	4352	0.105408	GCCAATATGCCAAGCCCAAG	59.895	55.000	0.00	0.00	0.00	3.61
3672	4353	0.616964	TGCCAATATGCCAAGCCCAA	60.617	50.000	0.00	0.00	0.00	4.12
3673	4354	0.398806	ATGCCAATATGCCAAGCCCA	60.399	50.000	0.00	0.00	0.00	5.36
3674	4355	0.760572	AATGCCAATATGCCAAGCCC	59.239	50.000	0.00	0.00	0.00	5.19
3675	4356	2.625695	AAATGCCAATATGCCAAGCC	57.374	45.000	0.00	0.00	0.00	4.35
3676	4357	4.512571	CCTTAAAATGCCAATATGCCAAGC	59.487	41.667	0.00	0.00	0.00	4.01
3677	4358	5.916318	TCCTTAAAATGCCAATATGCCAAG	58.084	37.500	0.00	0.00	0.00	3.61
3678	4359	5.946942	TCCTTAAAATGCCAATATGCCAA	57.053	34.783	0.00	0.00	0.00	4.52
3679	4360	5.660417	TCTTCCTTAAAATGCCAATATGCCA	59.340	36.000	0.00	0.00	0.00	4.92
3680	4361	6.160576	TCTTCCTTAAAATGCCAATATGCC	57.839	37.500	0.00	0.00	0.00	4.40
3681	4362	6.218746	CCTCTTCCTTAAAATGCCAATATGC	58.781	40.000	0.00	0.00	0.00	3.14
3682	4363	6.218746	GCCTCTTCCTTAAAATGCCAATATG	58.781	40.000	0.00	0.00	0.00	1.78
3683	4364	5.305386	GGCCTCTTCCTTAAAATGCCAATAT	59.695	40.000	0.00	0.00	37.58	1.28
3684	4365	4.649218	GGCCTCTTCCTTAAAATGCCAATA	59.351	41.667	0.00	0.00	37.58	1.90
3685	4366	3.452264	GGCCTCTTCCTTAAAATGCCAAT	59.548	43.478	0.00	0.00	37.58	3.16
3686	4367	2.831526	GGCCTCTTCCTTAAAATGCCAA	59.168	45.455	0.00	0.00	37.58	4.52
3687	4368	2.456577	GGCCTCTTCCTTAAAATGCCA	58.543	47.619	0.00	0.00	37.58	4.92
3688	4369	1.757118	GGGCCTCTTCCTTAAAATGCC	59.243	52.381	0.84	0.00	36.92	4.40
3689	4370	1.405463	CGGGCCTCTTCCTTAAAATGC	59.595	52.381	0.84	0.00	0.00	3.56
3690	4371	2.024414	CCGGGCCTCTTCCTTAAAATG	58.976	52.381	0.84	0.00	0.00	2.32
3691	4372	1.685180	GCCGGGCCTCTTCCTTAAAAT	60.685	52.381	8.12	0.00	0.00	1.82
3692	4373	0.323087	GCCGGGCCTCTTCCTTAAAA	60.323	55.000	8.12	0.00	0.00	1.52
3693	4374	1.301954	GCCGGGCCTCTTCCTTAAA	59.698	57.895	8.12	0.00	0.00	1.52
3694	4375	1.921346	TGCCGGGCCTCTTCCTTAA	60.921	57.895	17.97	0.00	0.00	1.85
3695	4376	2.285069	TGCCGGGCCTCTTCCTTA	60.285	61.111	17.97	0.00	0.00	2.69
3696	4377	4.035102	GTGCCGGGCCTCTTCCTT	62.035	66.667	17.97	0.00	0.00	3.36
3726	4407	0.332972	AGCCCTGAAAAGCCCTTAGG	59.667	55.000	0.00	0.00	0.00	2.69
3727	4408	2.222227	AAGCCCTGAAAAGCCCTTAG	57.778	50.000	0.00	0.00	0.00	2.18
3728	4409	2.694616	AAAGCCCTGAAAAGCCCTTA	57.305	45.000	0.00	0.00	0.00	2.69
3729	4410	1.806496	AAAAGCCCTGAAAAGCCCTT	58.194	45.000	0.00	0.00	0.00	3.95
3730	4411	1.806496	AAAAAGCCCTGAAAAGCCCT	58.194	45.000	0.00	0.00	0.00	5.19
3731	4412	2.289444	GGTAAAAAGCCCTGAAAAGCCC	60.289	50.000	0.00	0.00	0.00	5.19
3732	4413	2.367241	TGGTAAAAAGCCCTGAAAAGCC	59.633	45.455	0.00	0.00	0.00	4.35
3733	4414	3.320826	TCTGGTAAAAAGCCCTGAAAAGC	59.679	43.478	0.00	0.00	0.00	3.51
3734	4415	5.473039	CATCTGGTAAAAAGCCCTGAAAAG	58.527	41.667	0.00	0.00	0.00	2.27
3735	4416	4.283212	CCATCTGGTAAAAAGCCCTGAAAA	59.717	41.667	0.00	0.00	0.00	2.29
3736	4417	3.831911	CCATCTGGTAAAAAGCCCTGAAA	59.168	43.478	0.00	0.00	0.00	2.69
3737	4418	3.430453	CCATCTGGTAAAAAGCCCTGAA	58.570	45.455	0.00	0.00	0.00	3.02
3738	4419	2.291540	CCCATCTGGTAAAAAGCCCTGA	60.292	50.000	0.00	0.00	0.00	3.86
3739	4420	2.102578	CCCATCTGGTAAAAAGCCCTG	58.897	52.381	0.00	0.00	0.00	4.45
3740	4421	1.619704	GCCCATCTGGTAAAAAGCCCT	60.620	52.381	0.00	0.00	36.04	5.19
3741	4422	0.824109	GCCCATCTGGTAAAAAGCCC	59.176	55.000	0.00	0.00	36.04	5.19
3742	4423	0.824109	GGCCCATCTGGTAAAAAGCC	59.176	55.000	0.00	0.00	36.04	4.35
3743	4424	0.455815	CGGCCCATCTGGTAAAAAGC	59.544	55.000	0.00	0.00	36.04	3.51
3744	4425	2.017049	CTCGGCCCATCTGGTAAAAAG	58.983	52.381	0.00	0.00	36.04	2.27
3745	4426	1.953311	GCTCGGCCCATCTGGTAAAAA	60.953	52.381	0.00	0.00	36.04	1.94
3746	4427	0.393808	GCTCGGCCCATCTGGTAAAA	60.394	55.000	0.00	0.00	36.04	1.52
3747	4428	1.223487	GCTCGGCCCATCTGGTAAA	59.777	57.895	0.00	0.00	36.04	2.01
3748	4429	1.271840	AAGCTCGGCCCATCTGGTAA	61.272	55.000	0.00	0.00	36.04	2.85
3749	4430	1.689233	AAGCTCGGCCCATCTGGTA	60.689	57.895	0.00	0.00	36.04	3.25
3750	4431	3.011517	AAGCTCGGCCCATCTGGT	61.012	61.111	0.00	0.00	36.04	4.00
3751	4432	2.515523	CAAGCTCGGCCCATCTGG	60.516	66.667	0.00	0.00	37.09	3.86
3752	4433	2.515523	CCAAGCTCGGCCCATCTG	60.516	66.667	0.00	0.00	0.00	2.90
3753	4434	3.801997	CCCAAGCTCGGCCCATCT	61.802	66.667	0.00	0.00	0.00	2.90
3764	4445	1.067565	GCCTACTTTTCAAGCCCAAGC	60.068	52.381	0.00	0.00	40.32	4.01
3765	4446	1.546029	GGCCTACTTTTCAAGCCCAAG	59.454	52.381	0.00	0.00	37.66	3.61
3766	4447	1.627864	GGCCTACTTTTCAAGCCCAA	58.372	50.000	0.00	0.00	37.66	4.12
3767	4448	3.356814	GGCCTACTTTTCAAGCCCA	57.643	52.632	0.00	0.00	37.66	5.36
3769	4450	0.322187	TCGGGCCTACTTTTCAAGCC	60.322	55.000	0.84	0.00	43.09	4.35
3770	4451	1.401905	CATCGGGCCTACTTTTCAAGC	59.598	52.381	0.84	0.00	0.00	4.01
3771	4452	2.017049	CCATCGGGCCTACTTTTCAAG	58.983	52.381	0.84	0.00	0.00	3.02
3772	4453	1.353022	ACCATCGGGCCTACTTTTCAA	59.647	47.619	0.84	0.00	37.90	2.69
3773	4454	0.988832	ACCATCGGGCCTACTTTTCA	59.011	50.000	0.84	0.00	37.90	2.69
3774	4455	2.484947	CCTACCATCGGGCCTACTTTTC	60.485	54.545	0.84	0.00	37.90	2.29
3775	4456	1.489230	CCTACCATCGGGCCTACTTTT	59.511	52.381	0.84	0.00	37.90	2.27
3776	4457	1.129058	CCTACCATCGGGCCTACTTT	58.871	55.000	0.84	0.00	37.90	2.66
3777	4458	0.763223	CCCTACCATCGGGCCTACTT	60.763	60.000	0.84	0.00	37.90	2.24
3778	4459	1.152312	CCCTACCATCGGGCCTACT	60.152	63.158	0.84	0.00	37.90	2.57
3779	4460	3.468063	CCCTACCATCGGGCCTAC	58.532	66.667	0.84	0.00	37.90	3.18
3784	4465	4.256180	GCAGGCCCTACCATCGGG	62.256	72.222	0.00	0.00	44.89	5.14
3785	4466	4.609018	CGCAGGCCCTACCATCGG	62.609	72.222	0.00	0.00	43.14	4.18
3797	4478	0.169009	GCTGAAAACTAAGGCGCAGG	59.831	55.000	10.83	0.00	0.00	4.85
3798	4479	0.169009	GGCTGAAAACTAAGGCGCAG	59.831	55.000	10.83	0.00	0.00	5.18
3799	4480	2.253513	GGCTGAAAACTAAGGCGCA	58.746	52.632	10.83	0.00	0.00	6.09
3802	4483	0.521735	CCACGGCTGAAAACTAAGGC	59.478	55.000	0.00	0.00	35.72	4.35
3803	4484	1.165270	CCCACGGCTGAAAACTAAGG	58.835	55.000	0.00	0.00	0.00	2.69
3804	4485	0.521735	GCCCACGGCTGAAAACTAAG	59.478	55.000	0.00	0.00	46.69	2.18
3805	4486	2.636299	GCCCACGGCTGAAAACTAA	58.364	52.632	0.00	0.00	46.69	2.24
3806	4487	4.390048	GCCCACGGCTGAAAACTA	57.610	55.556	0.00	0.00	46.69	2.24
3843	4524	2.951642	CACAACTATACTTGGCCATGGG	59.048	50.000	21.67	10.90	0.00	4.00
3844	4525	3.627577	GTCACAACTATACTTGGCCATGG	59.372	47.826	21.67	7.63	0.00	3.66
3845	4526	3.627577	GGTCACAACTATACTTGGCCATG	59.372	47.826	16.76	16.76	0.00	3.66
3846	4527	3.681594	CGGTCACAACTATACTTGGCCAT	60.682	47.826	6.09	0.00	0.00	4.40
3847	4528	2.354303	CGGTCACAACTATACTTGGCCA	60.354	50.000	0.00	0.00	0.00	5.36
3848	4529	2.277084	CGGTCACAACTATACTTGGCC	58.723	52.381	0.00	0.00	0.00	5.36
3849	4530	1.664151	GCGGTCACAACTATACTTGGC	59.336	52.381	0.00	0.00	0.00	4.52
3850	4531	2.093658	AGGCGGTCACAACTATACTTGG	60.094	50.000	0.00	0.00	0.00	3.61
3851	4532	3.187700	GAGGCGGTCACAACTATACTTG	58.812	50.000	0.00	0.00	0.00	3.16
3852	4533	2.159282	CGAGGCGGTCACAACTATACTT	60.159	50.000	0.00	0.00	0.00	2.24
3853	4534	1.404391	CGAGGCGGTCACAACTATACT	59.596	52.381	0.00	0.00	0.00	2.12
3854	4535	1.836383	CGAGGCGGTCACAACTATAC	58.164	55.000	0.00	0.00	0.00	1.47
3855	4536	0.101759	GCGAGGCGGTCACAACTATA	59.898	55.000	0.00	0.00	0.00	1.31
3856	4537	1.153628	GCGAGGCGGTCACAACTAT	60.154	57.895	0.00	0.00	0.00	2.12
3857	4538	2.260434	GCGAGGCGGTCACAACTA	59.740	61.111	0.00	0.00	0.00	2.24
3873	4554	3.810896	GGGGACATTCAACGCCGC	61.811	66.667	0.00	0.00	0.00	6.53
3879	4560	1.064758	CCGATTGGAGGGGACATTCAA	60.065	52.381	0.00	0.00	37.49	2.69
3884	4565	3.781307	CGCCGATTGGAGGGGACA	61.781	66.667	1.98	0.00	43.49	4.02
3885	4566	3.325201	AACGCCGATTGGAGGGGAC	62.325	63.158	1.98	0.00	43.49	4.46
3895	4578	2.264794	GGAGTGTCCAACGCCGAT	59.735	61.111	0.00	0.00	39.11	4.18
3919	4602	3.764160	GAGGGCTCCGATGGCAAGG	62.764	68.421	6.07	6.07	0.00	3.61
3972	4655	2.940890	ATATGTTGCCCCTCGTGCCG	62.941	60.000	0.00	0.00	0.00	5.69
3976	4659	2.099405	CCAAAATATGTTGCCCCTCGT	58.901	47.619	0.00	0.00	0.00	4.18
3982	4665	1.202405	CGGGAGCCAAAATATGTTGCC	60.202	52.381	0.00	0.00	0.00	4.52
3998	4692	2.045242	CTCCTCGTCAGACCGGGA	60.045	66.667	6.32	8.39	0.00	5.14
4009	4703	1.446272	GTTCCCGCTGTTCTCCTCG	60.446	63.158	0.00	0.00	0.00	4.63
4029	4723	1.542881	TTCCCTCCATTTCCCCCGT	60.543	57.895	0.00	0.00	0.00	5.28
4048	5272	2.485122	CGCCGTTTTGCCCATCTC	59.515	61.111	0.00	0.00	0.00	2.75
4051	5275	4.669809	TCCCGCCGTTTTGCCCAT	62.670	61.111	0.00	0.00	0.00	4.00
4052	5276	2.766306	TATTCCCGCCGTTTTGCCCA	62.766	55.000	0.00	0.00	0.00	5.36
4053	5277	1.388837	ATATTCCCGCCGTTTTGCCC	61.389	55.000	0.00	0.00	0.00	5.36
4111	5335	4.660938	GGGGTGCCGGTTGAAGCT	62.661	66.667	1.90	0.00	0.00	3.74
4163	5387	0.164432	CCGAAAAACTACCGGCGAAC	59.836	55.000	9.30	0.00	36.62	3.95
4173	5397	1.407618	GTCAGTTTGGGCCGAAAAACT	59.592	47.619	15.10	17.40	45.22	2.66
4177	5401	0.250553	ATCGTCAGTTTGGGCCGAAA	60.251	50.000	9.10	9.10	0.00	3.46
4180	5404	1.597663	GATTATCGTCAGTTTGGGCCG	59.402	52.381	0.00	0.00	0.00	6.13
4190	5415	2.550180	CTCAGCTCCTCGATTATCGTCA	59.450	50.000	14.47	0.00	41.35	4.35
4192	5417	1.883275	CCTCAGCTCCTCGATTATCGT	59.117	52.381	14.47	0.00	41.35	3.73
4204	5429	2.202544	CAGTCGCGTCCTCAGCTC	60.203	66.667	5.77	0.00	0.00	4.09
4210	5435	2.172483	AATTGGCTCAGTCGCGTCCT	62.172	55.000	5.77	0.00	0.00	3.85
4213	5438	0.951558	AAAAATTGGCTCAGTCGCGT	59.048	45.000	5.77	0.00	0.00	6.01
4215	5440	1.606606	CGAAAAATTGGCTCAGTCGC	58.393	50.000	0.00	0.00	0.00	5.19
4233	5458	3.095898	CTTTTTAGAGCCGGCGCCG	62.096	63.158	41.00	41.00	39.44	6.46
4240	5465	2.038837	ACGGCGCCTTTTTAGAGCC	61.039	57.895	26.68	0.00	44.00	4.70
4243	5468	1.673009	CCCACGGCGCCTTTTTAGA	60.673	57.895	26.68	0.00	0.00	2.10
4279	5507	4.465512	CGCAATGGCTTTCGCGCT	62.466	61.111	5.56	0.00	41.38	5.92
4282	5510	2.842588	TAACGCGCAATGGCTTTCGC	62.843	55.000	5.73	14.95	43.62	4.70
4283	5511	0.857311	CTAACGCGCAATGGCTTTCG	60.857	55.000	5.73	0.00	38.10	3.46
4284	5512	1.133946	GCTAACGCGCAATGGCTTTC	61.134	55.000	5.73	0.00	38.10	2.62
4285	5513	1.154035	GCTAACGCGCAATGGCTTT	60.154	52.632	5.73	0.00	38.10	3.51
4286	5514	2.485122	GCTAACGCGCAATGGCTT	59.515	55.556	5.73	0.00	38.10	4.35
4297	5525	0.719465	AGAAAACGGATGCGCTAACG	59.281	50.000	9.73	12.78	44.07	3.18
4298	5526	2.505866	CAAGAAAACGGATGCGCTAAC	58.494	47.619	9.73	0.00	0.00	2.34
4299	5527	1.135803	GCAAGAAAACGGATGCGCTAA	60.136	47.619	9.73	0.00	0.00	3.09
4300	5528	0.446222	GCAAGAAAACGGATGCGCTA	59.554	50.000	9.73	0.00	0.00	4.26
4301	5529	1.210155	GCAAGAAAACGGATGCGCT	59.790	52.632	9.73	0.00	0.00	5.92
4302	5530	0.387239	AAGCAAGAAAACGGATGCGC	60.387	50.000	6.51	0.00	43.39	6.09
4303	5531	1.069296	TCAAGCAAGAAAACGGATGCG	60.069	47.619	4.58	4.58	43.39	4.73
4304	5532	2.704725	TCAAGCAAGAAAACGGATGC	57.295	45.000	0.00	0.00	39.06	3.91
4305	5533	6.529463	AAAAATCAAGCAAGAAAACGGATG	57.471	33.333	0.00	0.00	0.00	3.51
4306	5534	9.353999	GTATAAAAATCAAGCAAGAAAACGGAT	57.646	29.630	0.00	0.00	0.00	4.18
4307	5535	7.535940	CGTATAAAAATCAAGCAAGAAAACGGA	59.464	33.333	0.00	0.00	0.00	4.69
4308	5536	7.535940	TCGTATAAAAATCAAGCAAGAAAACGG	59.464	33.333	0.00	0.00	0.00	4.44
4309	5537	8.429739	TCGTATAAAAATCAAGCAAGAAAACG	57.570	30.769	0.00	0.00	0.00	3.60
4336	5564	1.222300	TCGCGCTAGTTGCTCAAAAA	58.778	45.000	5.56	0.00	40.11	1.94
4337	5565	1.222300	TTCGCGCTAGTTGCTCAAAA	58.778	45.000	5.56	0.00	40.11	2.44
4338	5566	1.194547	CTTTCGCGCTAGTTGCTCAAA	59.805	47.619	5.56	0.00	40.11	2.69
4339	5567	0.790207	CTTTCGCGCTAGTTGCTCAA	59.210	50.000	5.56	0.00	40.11	3.02
4340	5568	1.626654	GCTTTCGCGCTAGTTGCTCA	61.627	55.000	5.56	0.00	40.11	4.26
4341	5569	1.059525	GCTTTCGCGCTAGTTGCTC	59.940	57.895	5.56	0.00	40.11	4.26
4342	5570	2.391389	GGCTTTCGCGCTAGTTGCT	61.391	57.895	5.56	0.00	40.11	3.91
4343	5571	2.098489	GGCTTTCGCGCTAGTTGC	59.902	61.111	5.56	3.15	36.88	4.17
4344	5572	1.897398	AACGGCTTTCGCGCTAGTTG	61.897	55.000	5.56	0.58	43.89	3.16
4345	5573	1.666872	AACGGCTTTCGCGCTAGTT	60.667	52.632	5.56	0.00	43.89	2.24
4346	5574	2.048503	AACGGCTTTCGCGCTAGT	60.049	55.556	5.56	0.00	43.89	2.57
4347	5575	2.395690	CAACGGCTTTCGCGCTAG	59.604	61.111	5.56	1.44	43.89	3.42
4348	5576	3.784412	GCAACGGCTTTCGCGCTA	61.784	61.111	5.56	0.00	43.89	4.26
4353	5581	4.362946	TTCGCGCAACGGCTTTCG	62.363	61.111	8.75	0.00	43.89	3.46
4354	5582	2.795389	GTTCGCGCAACGGCTTTC	60.795	61.111	8.75	0.00	43.89	2.62
4355	5583	3.521308	CTGTTCGCGCAACGGCTTT	62.521	57.895	8.75	0.00	43.89	3.51
4356	5584	4.012895	CTGTTCGCGCAACGGCTT	62.013	61.111	8.75	0.00	43.89	4.35
4359	5587	2.887889	TTTCCTGTTCGCGCAACGG	61.888	57.895	18.71	18.71	43.89	4.44
4360	5588	1.721133	GTTTCCTGTTCGCGCAACG	60.721	57.895	8.75	7.68	45.62	4.10
4361	5589	0.863144	TAGTTTCCTGTTCGCGCAAC	59.137	50.000	8.75	11.81	35.28	4.17
4362	5590	1.584175	TTAGTTTCCTGTTCGCGCAA	58.416	45.000	8.75	0.00	0.00	4.85
4363	5591	1.803334	ATTAGTTTCCTGTTCGCGCA	58.197	45.000	8.75	0.00	0.00	6.09
4364	5592	2.894307	AATTAGTTTCCTGTTCGCGC	57.106	45.000	0.00	0.00	0.00	6.86
4365	5593	4.779523	CGTTTAATTAGTTTCCTGTTCGCG	59.220	41.667	0.00	0.00	0.00	5.87
4366	5594	5.084055	CCGTTTAATTAGTTTCCTGTTCGC	58.916	41.667	0.00	0.00	0.00	4.70
4384	5612	4.578928	TGAGCTTAGCTTTCTTTTCCGTTT	59.421	37.500	8.58	0.00	39.88	3.60
4474	5702	3.243134	GGTACTGAGAACCGTAGAGATGC	60.243	52.174	0.00	0.00	0.00	3.91
4555	5783	3.520862	GTATCGACCCGGTGCCGA	61.521	66.667	12.71	11.50	42.83	5.54
4575	8205	1.700042	GGGGAGACATGGCCTGTAGG	61.700	65.000	3.32	0.00	38.54	3.18
4579	8209	0.689623	GATAGGGGAGACATGGCCTG	59.310	60.000	3.32	2.01	0.00	4.85
4582	8212	1.674057	CGGATAGGGGAGACATGGC	59.326	63.158	0.00	0.00	0.00	4.40
4680	8310	2.158780	AAGCCAGGGTTCTGAGCTT	58.841	52.632	0.00	12.74	44.68	3.74
4813	8443	5.997746	ACTAGCACTACCGTATACCGAAATA	59.002	40.000	0.00	0.00	39.56	1.40
4815	8445	4.199310	ACTAGCACTACCGTATACCGAAA	58.801	43.478	0.00	0.00	39.56	3.46
4872	8523	0.588252	ACTGTTCGTGTGCATTCTGC	59.412	50.000	0.00	0.00	45.29	4.26
4875	8526	3.542712	ATGAACTGTTCGTGTGCATTC	57.457	42.857	14.13	0.00	29.91	2.67
4913	8564	4.785511	TTGAAGGACAGAGTACTGCTAC	57.214	45.455	0.00	0.00	46.95	3.58
4914	8565	4.833380	ACTTTGAAGGACAGAGTACTGCTA	59.167	41.667	0.00	0.00	46.95	3.49
4920	8571	4.771054	GGGAGTACTTTGAAGGACAGAGTA	59.229	45.833	8.70	0.00	42.53	2.59
4922	8573	3.835395	AGGGAGTACTTTGAAGGACAGAG	59.165	47.826	8.70	0.00	42.53	3.35
4924	8575	3.055747	GGAGGGAGTACTTTGAAGGACAG	60.056	52.174	8.70	0.00	42.53	3.51
4925	8576	2.904434	GGAGGGAGTACTTTGAAGGACA	59.096	50.000	8.70	0.00	42.53	4.02
4926	8577	2.094130	CGGAGGGAGTACTTTGAAGGAC	60.094	54.545	0.00	0.00	40.30	3.85
4927	8578	2.176889	CGGAGGGAGTACTTTGAAGGA	58.823	52.381	0.00	0.00	0.00	3.36
4928	8579	1.900486	ACGGAGGGAGTACTTTGAAGG	59.100	52.381	0.00	0.00	0.00	3.46
4929	8580	3.586892	GAACGGAGGGAGTACTTTGAAG	58.413	50.000	0.00	0.00	0.00	3.02
4930	8581	2.029649	CGAACGGAGGGAGTACTTTGAA	60.030	50.000	0.00	0.00	0.00	2.69
4931	8582	1.542915	CGAACGGAGGGAGTACTTTGA	59.457	52.381	0.00	0.00	0.00	2.69
4932	8583	1.403780	CCGAACGGAGGGAGTACTTTG	60.404	57.143	7.53	0.00	37.50	2.77
4933	8584	0.893447	CCGAACGGAGGGAGTACTTT	59.107	55.000	7.53	0.00	37.50	2.66
4934	8585	0.038744	TCCGAACGGAGGGAGTACTT	59.961	55.000	12.04	0.00	39.76	2.24
4935	8586	0.038744	TTCCGAACGGAGGGAGTACT	59.961	55.000	15.34	0.00	46.06	2.73
4936	8587	1.109609	ATTCCGAACGGAGGGAGTAC	58.890	55.000	15.34	0.00	46.06	2.73
4937	8588	1.856629	AATTCCGAACGGAGGGAGTA	58.143	50.000	15.34	1.05	46.06	2.59
4938	8589	1.479730	GTAATTCCGAACGGAGGGAGT	59.520	52.381	15.34	4.12	46.06	3.85
4939	8590	1.755380	AGTAATTCCGAACGGAGGGAG	59.245	52.381	15.34	0.00	46.06	4.30
4944	8595	1.729284	GGCAAGTAATTCCGAACGGA	58.271	50.000	12.04	12.04	43.52	4.69
4950	8601	1.083489	TTCTGCGGCAAGTAATTCCG	58.917	50.000	3.44	8.71	45.46	4.30
4951	8602	3.128589	TCATTTCTGCGGCAAGTAATTCC	59.871	43.478	3.44	0.00	0.00	3.01
4952	8603	4.355543	TCATTTCTGCGGCAAGTAATTC	57.644	40.909	3.44	0.00	0.00	2.17
4960	8611	3.544684	AGATACATTCATTTCTGCGGCA	58.455	40.909	1.29	1.29	0.00	5.69
4962	8613	8.939201	ATATCTAGATACATTCATTTCTGCGG	57.061	34.615	14.71	0.00	0.00	5.69
4990	8641	9.893634	TCGGAAATGGATGTATCTAAAACTAAA	57.106	29.630	0.00	0.00	0.00	1.85
4991	8642	9.542462	CTCGGAAATGGATGTATCTAAAACTAA	57.458	33.333	0.00	0.00	0.00	2.24
4992	8643	8.920174	TCTCGGAAATGGATGTATCTAAAACTA	58.080	33.333	0.00	0.00	0.00	2.24
4993	8644	7.711339	GTCTCGGAAATGGATGTATCTAAAACT	59.289	37.037	0.00	0.00	0.00	2.66
4994	8645	7.494625	TGTCTCGGAAATGGATGTATCTAAAAC	59.505	37.037	0.00	0.00	0.00	2.43
4995	8646	7.561251	TGTCTCGGAAATGGATGTATCTAAAA	58.439	34.615	0.00	0.00	0.00	1.52
4996	8647	7.119709	TGTCTCGGAAATGGATGTATCTAAA	57.880	36.000	0.00	0.00	0.00	1.85
4997	8648	6.724893	TGTCTCGGAAATGGATGTATCTAA	57.275	37.500	0.00	0.00	0.00	2.10
4998	8649	6.323996	ACTTGTCTCGGAAATGGATGTATCTA	59.676	38.462	0.00	0.00	0.00	1.98
4999	8650	5.129485	ACTTGTCTCGGAAATGGATGTATCT	59.871	40.000	0.00	0.00	0.00	1.98
5000	8651	5.360591	ACTTGTCTCGGAAATGGATGTATC	58.639	41.667	0.00	0.00	0.00	2.24
5001	8652	5.359194	ACTTGTCTCGGAAATGGATGTAT	57.641	39.130	0.00	0.00	0.00	2.29
5002	8653	4.819105	ACTTGTCTCGGAAATGGATGTA	57.181	40.909	0.00	0.00	0.00	2.29
5003	8654	3.703001	ACTTGTCTCGGAAATGGATGT	57.297	42.857	0.00	0.00	0.00	3.06
5004	8655	6.238484	GGAATTACTTGTCTCGGAAATGGATG	60.238	42.308	0.00	0.00	0.00	3.51
5005	8656	5.823045	GGAATTACTTGTCTCGGAAATGGAT	59.177	40.000	0.00	0.00	0.00	3.41
5006	8657	5.183228	GGAATTACTTGTCTCGGAAATGGA	58.817	41.667	0.00	0.00	0.00	3.41
5007	8658	4.034048	CGGAATTACTTGTCTCGGAAATGG	59.966	45.833	0.00	0.00	0.00	3.16
5008	8659	4.868171	TCGGAATTACTTGTCTCGGAAATG	59.132	41.667	0.00	0.00	0.00	2.32
5009	8660	5.080969	TCGGAATTACTTGTCTCGGAAAT	57.919	39.130	0.00	0.00	0.00	2.17
5010	8661	4.524316	TCGGAATTACTTGTCTCGGAAA	57.476	40.909	0.00	0.00	0.00	3.13
5011	8662	4.240096	GTTCGGAATTACTTGTCTCGGAA	58.760	43.478	0.00	0.00	0.00	4.30
5012	8663	3.671433	CGTTCGGAATTACTTGTCTCGGA	60.671	47.826	0.00	0.00	0.00	4.55
5013	8664	2.597305	CGTTCGGAATTACTTGTCTCGG	59.403	50.000	0.00	0.00	0.00	4.63
5014	8665	2.597305	CCGTTCGGAATTACTTGTCTCG	59.403	50.000	5.19	0.00	0.00	4.04
5015	8666	3.841643	TCCGTTCGGAATTACTTGTCTC	58.158	45.455	11.66	0.00	0.00	3.36
5016	8667	3.368116	CCTCCGTTCGGAATTACTTGTCT	60.368	47.826	14.79	0.00	33.41	3.41
5017	8668	2.928116	CCTCCGTTCGGAATTACTTGTC	59.072	50.000	14.79	0.00	33.41	3.18
5018	8669	2.354403	CCCTCCGTTCGGAATTACTTGT	60.354	50.000	14.79	0.00	33.41	3.16
5019	8670	2.093869	TCCCTCCGTTCGGAATTACTTG	60.094	50.000	14.79	1.97	33.41	3.16
5020	8671	2.167900	CTCCCTCCGTTCGGAATTACTT	59.832	50.000	14.79	0.00	33.41	2.24
5021	8672	1.755380	CTCCCTCCGTTCGGAATTACT	59.245	52.381	14.79	0.00	33.41	2.24
5022	8673	1.479730	ACTCCCTCCGTTCGGAATTAC	59.520	52.381	14.79	0.00	33.41	1.89
5023	8674	1.856629	ACTCCCTCCGTTCGGAATTA	58.143	50.000	14.79	2.82	33.41	1.40
5024	8675	1.856629	TACTCCCTCCGTTCGGAATT	58.143	50.000	14.79	0.00	33.41	2.17
5025	8676	2.083628	ATACTCCCTCCGTTCGGAAT	57.916	50.000	14.79	2.14	33.41	3.01
5026	8677	2.734755	TATACTCCCTCCGTTCGGAA	57.265	50.000	14.79	0.00	33.41	4.30
5027	8678	2.092212	ACTTATACTCCCTCCGTTCGGA	60.092	50.000	13.34	13.34	0.00	4.55
5028	8679	2.305009	ACTTATACTCCCTCCGTTCGG	58.695	52.381	4.74	4.74	0.00	4.30
5029	8680	4.578105	ACTAACTTATACTCCCTCCGTTCG	59.422	45.833	0.00	0.00	0.00	3.95
5030	8681	5.735638	GCACTAACTTATACTCCCTCCGTTC	60.736	48.000	0.00	0.00	0.00	3.95
5031	8682	4.099113	GCACTAACTTATACTCCCTCCGTT	59.901	45.833	0.00	0.00	0.00	4.44
5032	8683	3.635836	GCACTAACTTATACTCCCTCCGT	59.364	47.826	0.00	0.00	0.00	4.69
5033	8684	3.635373	TGCACTAACTTATACTCCCTCCG	59.365	47.826	0.00	0.00	0.00	4.63
5034	8685	4.650131	ACTGCACTAACTTATACTCCCTCC	59.350	45.833	0.00	0.00	0.00	4.30
5035	8686	5.855740	ACTGCACTAACTTATACTCCCTC	57.144	43.478	0.00	0.00	0.00	4.30
5036	8687	5.302313	GCTACTGCACTAACTTATACTCCCT	59.698	44.000	0.00	0.00	39.41	4.20
5037	8688	5.068723	TGCTACTGCACTAACTTATACTCCC	59.931	44.000	0.00	0.00	45.31	4.30
5038	8689	6.145338	TGCTACTGCACTAACTTATACTCC	57.855	41.667	0.00	0.00	45.31	3.85
5068	8719	3.117046	GCTCTAGGCTGTAAAGTAAGCG	58.883	50.000	0.00	0.00	40.46	4.68
5083	8734	1.361993	CGCACAGGGCTAGCTCTAG	59.638	63.158	18.93	14.24	41.67	2.43
5600	9270	4.395959	TCCGGTTTCAGTATGGTATGAC	57.604	45.455	0.00	0.00	36.16	3.06
5612	9282	5.593679	TGTTTTTATGGTTTCCGGTTTCA	57.406	34.783	0.00	0.00	0.00	2.69
5709	9381	5.936956	GCTTGGTATATCTAGAAGCATTGCT	59.063	40.000	5.03	5.03	42.56	3.91
5710	9382	5.123027	GGCTTGGTATATCTAGAAGCATTGC	59.877	44.000	11.39	0.00	40.68	3.56
5711	9383	6.148480	GTGGCTTGGTATATCTAGAAGCATTG	59.852	42.308	11.39	3.20	40.68	2.82
5789	9462	4.452795	GGAAAAGTAGGAAGTGACTTGAGC	59.547	45.833	0.90	0.00	36.05	4.26
5811	9484	0.108138	GCACACAGTACTGCCCTAGG	60.108	60.000	22.90	0.06	0.00	3.02
5851	9524	5.776173	ATGACGAGAAGTACTTCCATAGG	57.224	43.478	28.05	16.49	40.33	2.57
5852	9525	7.308109	GGACTATGACGAGAAGTACTTCCATAG	60.308	44.444	32.07	32.07	40.24	2.23
5853	9526	6.485984	GGACTATGACGAGAAGTACTTCCATA	59.514	42.308	28.05	23.99	40.33	2.74
5857	9530	5.814764	TGGACTATGACGAGAAGTACTTC	57.185	43.478	25.24	25.24	39.78	3.01
5889	9562	5.477984	AGAAGTGATCAAGCAGGCAAATTAA	59.522	36.000	0.00	0.00	0.00	1.40
5890	9563	5.012239	AGAAGTGATCAAGCAGGCAAATTA	58.988	37.500	0.00	0.00	0.00	1.40
5891	9564	3.830755	AGAAGTGATCAAGCAGGCAAATT	59.169	39.130	0.00	0.00	0.00	1.82
5892	9565	3.428532	AGAAGTGATCAAGCAGGCAAAT	58.571	40.909	0.00	0.00	0.00	2.32
5930	9610	8.782339	AACATAGTAAATACACAAGTACCCAC	57.218	34.615	0.00	0.00	31.96	4.61
6052	9732	0.387929	TTGCCAGAGTCGAGAACGTT	59.612	50.000	0.00	0.00	40.69	3.99
6080	9760	2.169832	ACGTTGGTGAAGATGGTCAG	57.830	50.000	0.00	0.00	0.00	3.51
6144	9824	1.069358	CTCTCTGGATTCTTACCGGCC	59.931	57.143	0.00	0.00	34.13	6.13
6232	9912	8.729529	ATCTATCAAACTGTATTATCGTGTCG	57.270	34.615	0.00	0.00	0.00	4.35
6264	9944	2.935740	GCAAAGCACAGCCCTTCCC	61.936	63.158	0.00	0.00	0.00	3.97
6265	9945	1.747325	TTGCAAAGCACAGCCCTTCC	61.747	55.000	0.00	0.00	38.71	3.46
6324	10071	8.410673	TGTGGGTGTTATTGTGTTAAATACAT	57.589	30.769	0.00	0.00	39.39	2.29
6325	10072	7.818997	TGTGGGTGTTATTGTGTTAAATACA	57.181	32.000	0.00	0.00	0.00	2.29
6326	10073	7.274686	GCATGTGGGTGTTATTGTGTTAAATAC	59.725	37.037	0.00	0.00	0.00	1.89
6328	10075	6.014669	AGCATGTGGGTGTTATTGTGTTAAAT	60.015	34.615	0.00	0.00	0.00	1.40
6329	10076	5.303078	AGCATGTGGGTGTTATTGTGTTAAA	59.697	36.000	0.00	0.00	0.00	1.52
6330	10077	4.830046	AGCATGTGGGTGTTATTGTGTTAA	59.170	37.500	0.00	0.00	0.00	2.01
6331	10078	4.402829	AGCATGTGGGTGTTATTGTGTTA	58.597	39.130	0.00	0.00	0.00	2.41
6332	10079	3.230134	AGCATGTGGGTGTTATTGTGTT	58.770	40.909	0.00	0.00	0.00	3.32
6333	10080	2.819608	GAGCATGTGGGTGTTATTGTGT	59.180	45.455	0.00	0.00	0.00	3.72
6334	10081	2.164219	GGAGCATGTGGGTGTTATTGTG	59.836	50.000	0.00	0.00	0.00	3.33
6335	10082	2.224992	TGGAGCATGTGGGTGTTATTGT	60.225	45.455	0.00	0.00	0.00	2.71
6336	10083	2.445427	TGGAGCATGTGGGTGTTATTG	58.555	47.619	0.00	0.00	0.00	1.90
6337	10084	2.897271	TGGAGCATGTGGGTGTTATT	57.103	45.000	0.00	0.00	0.00	1.40
6338	10085	2.825532	GTTTGGAGCATGTGGGTGTTAT	59.174	45.455	0.00	0.00	0.00	1.89
6342	10089	0.888736	TCGTTTGGAGCATGTGGGTG	60.889	55.000	0.00	0.00	0.00	4.61
6355	10102	3.236816	CCAGCAAAACATAGCTCGTTTG	58.763	45.455	13.30	9.89	39.50	2.93
6467	10220	3.062763	CGATGGAAGCTGCTAATCGAAT	58.937	45.455	25.57	10.56	41.98	3.34
6514	10267	2.026542	AGGAGATCATTGTGCTGCTGAA	60.027	45.455	0.00	0.00	0.00	3.02
6546	10299	2.554032	GGTTCACAAGTTGGGTCTGATG	59.446	50.000	4.74	0.00	0.00	3.07
6569	10322	4.630069	AGCGTCACCACTGATACAATTAAC	59.370	41.667	0.00	0.00	0.00	2.01
6583	10336	0.817654	CTCCATGTCTAGCGTCACCA	59.182	55.000	0.00	0.00	0.00	4.17
6594	10354	2.097825	AGGCAATTTGCTCTCCATGTC	58.902	47.619	20.06	1.32	44.28	3.06
6597	10357	2.822707	AGAGGCAATTTGCTCTCCAT	57.177	45.000	24.21	12.52	44.28	3.41
6750	10510	3.513225	TACGCTACGTACCCTGCC	58.487	61.111	0.00	0.00	41.54	4.85
6840	10600	8.948631	ACAGTACAGTACTCCATATGAATTTG	57.051	34.615	10.54	0.00	36.76	2.32
6914	10674	4.269363	GTGTATAATCCGGACGAAACAAGG	59.731	45.833	6.12	0.00	0.00	3.61
6967	10727	2.092211	GTGTGATCTTTACGGCAACTCG	59.908	50.000	0.00	0.00	0.00	4.18
6969	10729	3.067106	CTGTGTGATCTTTACGGCAACT	58.933	45.455	0.00	0.00	0.00	3.16
6973	10733	1.726853	AGCTGTGTGATCTTTACGGC	58.273	50.000	15.84	15.84	44.85	5.68
7042	10802	4.438880	CCCAAGATGTACTGTGTCTACGAG	60.439	50.000	0.00	0.00	0.00	4.18
7065	10825	5.285370	GTGTCACGGTTCAGAAAAGAAAAAC	59.715	40.000	0.00	0.00	0.00	2.43
7066	10826	5.048643	TGTGTCACGGTTCAGAAAAGAAAAA	60.049	36.000	0.00	0.00	0.00	1.94
7071	10831	2.936498	ACTGTGTCACGGTTCAGAAAAG	59.064	45.455	11.86	0.00	32.95	2.27
7076	10836	2.502213	TGTACTGTGTCACGGTTCAG	57.498	50.000	22.20	4.36	38.84	3.02
7098	10858	4.806247	GTGATGAAATAGGAGACGAACCAG	59.194	45.833	0.00	0.00	0.00	4.00
7104	10864	4.047822	GAGCTGTGATGAAATAGGAGACG	58.952	47.826	0.00	0.00	0.00	4.18
7155	10915	5.947443	AGTACGAGTAGTAGCGTTTCAAAT	58.053	37.500	3.65	0.00	41.49	2.32
7163	10923	2.346847	ACAACGAGTACGAGTAGTAGCG	59.653	50.000	0.00	4.72	42.66	4.26
7164	10924	3.484886	CCACAACGAGTACGAGTAGTAGC	60.485	52.174	0.00	0.00	42.66	3.58
7176	10936	1.605058	CCCTCCGATCCACAACGAGT	61.605	60.000	0.00	0.00	0.00	4.18
7177	10937	1.141881	CCCTCCGATCCACAACGAG	59.858	63.158	0.00	0.00	0.00	4.18
7178	10938	2.355986	CCCCTCCGATCCACAACGA	61.356	63.158	0.00	0.00	0.00	3.85
7179	10939	2.186903	CCCCTCCGATCCACAACG	59.813	66.667	0.00	0.00	0.00	4.10
7180	10940	0.979187	TACCCCCTCCGATCCACAAC	60.979	60.000	0.00	0.00	0.00	3.32
7181	10941	0.979187	GTACCCCCTCCGATCCACAA	60.979	60.000	0.00	0.00	0.00	3.33
7182	10942	1.382146	GTACCCCCTCCGATCCACA	60.382	63.158	0.00	0.00	0.00	4.17
7186	10946	1.201424	AACTTGTACCCCCTCCGATC	58.799	55.000	0.00	0.00	0.00	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.