Multiple sequence alignment - TraesCS2B01G226700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G226700 chr2B 100.000 7226 0 0 1 7226 217410732 217403507 0.000000e+00 13345.0
1 TraesCS2B01G226700 chr2B 93.117 741 37 4 6487 7226 452911030 452910303 0.000000e+00 1074.0
2 TraesCS2B01G226700 chr2B 92.527 736 38 5 6492 7225 776456187 776456907 0.000000e+00 1038.0
3 TraesCS2B01G226700 chr2B 92.857 406 16 3 6821 7226 561571166 561570774 1.750000e-160 577.0
4 TraesCS2B01G226700 chr2B 93.023 86 6 0 5050 5135 217405599 217405514 7.610000e-25 126.0
5 TraesCS2B01G226700 chr2B 93.023 86 6 0 5134 5219 217405683 217405598 7.610000e-25 126.0
6 TraesCS2B01G226700 chr2B 92.157 51 4 0 6360 6410 28634833 28634883 1.010000e-08 73.1
7 TraesCS2B01G226700 chr2A 94.670 4578 169 22 1937 6487 171955734 171951205 0.000000e+00 7033.0
8 TraesCS2B01G226700 chr2A 89.994 1589 83 32 343 1903 171957434 171955894 0.000000e+00 1984.0
9 TraesCS2B01G226700 chr2A 96.512 86 3 0 5050 5135 171952536 171952451 7.560000e-30 143.0
10 TraesCS2B01G226700 chr2A 93.023 86 6 0 5134 5219 171952620 171952535 7.610000e-25 126.0
11 TraesCS2B01G226700 chr2D 95.726 4329 151 11 1937 6240 160605853 160601534 0.000000e+00 6938.0
12 TraesCS2B01G226700 chr2D 91.035 1584 75 32 343 1903 160607476 160605937 0.000000e+00 2076.0
13 TraesCS2B01G226700 chr2D 82.943 299 40 7 1 291 15112535 15112240 7.190000e-65 259.0
14 TraesCS2B01G226700 chr2D 94.118 102 6 0 6236 6337 160601252 160601151 9.710000e-34 156.0
15 TraesCS2B01G226700 chr2D 97.674 86 2 0 5050 5135 160602640 160602555 1.620000e-31 148.0
16 TraesCS2B01G226700 chr2D 91.860 86 7 0 5134 5219 160602724 160602639 3.540000e-23 121.0
17 TraesCS2B01G226700 chr7B 94.313 721 28 3 6507 7226 191892727 191893435 0.000000e+00 1092.0
18 TraesCS2B01G226700 chr7B 92.992 742 38 6 6487 7226 498598916 498599645 0.000000e+00 1070.0
19 TraesCS2B01G226700 chr7B 92.857 742 39 6 6487 7226 739380150 739379421 0.000000e+00 1064.0
20 TraesCS2B01G226700 chr1B 93.836 730 30 5 6499 7226 94009974 94009258 0.000000e+00 1085.0
21 TraesCS2B01G226700 chr1B 93.487 737 34 4 6492 7226 643025801 643025077 0.000000e+00 1083.0
22 TraesCS2B01G226700 chrUn 93.271 743 35 7 6487 7226 263186150 263185420 0.000000e+00 1081.0
23 TraesCS2B01G226700 chrUn 93.136 743 36 7 6487 7226 50437481 50438211 0.000000e+00 1075.0
24 TraesCS2B01G226700 chrUn 88.235 323 30 7 1424 1742 64366350 64366668 5.290000e-101 379.0
25 TraesCS2B01G226700 chrUn 89.655 58 3 3 6360 6415 22143637 22143581 3.620000e-08 71.3
26 TraesCS2B01G226700 chr4A 92.732 743 39 5 6487 7226 670558819 670559549 0.000000e+00 1059.0
27 TraesCS2B01G226700 chr4A 88.922 334 29 6 1427 1757 653987603 653987275 8.730000e-109 405.0
28 TraesCS2B01G226700 chr4A 77.740 292 36 14 1 291 245254983 245255246 1.260000e-32 152.0
29 TraesCS2B01G226700 chr4B 92.809 737 39 4 6489 7223 655052534 655053258 0.000000e+00 1055.0
30 TraesCS2B01G226700 chr6B 92.537 737 41 4 6492 7226 26218589 26217865 0.000000e+00 1044.0
31 TraesCS2B01G226700 chr5B 87.785 745 73 14 6492 7226 678160704 678159968 0.000000e+00 856.0
32 TraesCS2B01G226700 chr5B 77.509 538 103 13 6694 7226 510504797 510505321 2.530000e-79 307.0
33 TraesCS2B01G226700 chr5B 78.840 293 34 13 1 291 249374885 249374619 9.640000e-39 172.0
34 TraesCS2B01G226700 chr5B 89.655 58 5 1 6360 6416 440032979 440032922 1.010000e-08 73.1
35 TraesCS2B01G226700 chr5B 89.474 57 6 0 6352 6408 711920253 711920197 1.010000e-08 73.1
36 TraesCS2B01G226700 chr5B 90.741 54 3 2 6353 6405 331547422 331547474 3.620000e-08 71.3
37 TraesCS2B01G226700 chr3B 93.333 510 24 2 6483 6991 786497252 786497752 0.000000e+00 745.0
38 TraesCS2B01G226700 chr3B 89.941 169 14 2 1580 1745 805667412 805667244 1.580000e-51 215.0
39 TraesCS2B01G226700 chr3B 78.281 221 39 7 1 217 68437181 68437396 4.550000e-27 134.0
40 TraesCS2B01G226700 chr3B 80.892 157 19 7 13 159 513469933 513469778 5.920000e-21 113.0
41 TraesCS2B01G226700 chr3B 90.909 55 4 1 6335 6389 764771186 764771239 1.010000e-08 73.1
42 TraesCS2B01G226700 chr3B 89.091 55 6 0 6352 6406 85333986 85333932 1.300000e-07 69.4
43 TraesCS2B01G226700 chr1A 90.244 164 14 2 1427 1589 11790917 11790755 5.680000e-51 213.0
44 TraesCS2B01G226700 chr3D 80.546 293 31 11 1 291 534677195 534676927 1.230000e-47 202.0
45 TraesCS2B01G226700 chr3A 77.627 295 37 13 1 291 669966230 669966499 1.260000e-32 152.0
46 TraesCS2B01G226700 chr3A 77.627 295 37 13 1 291 669990023 669989754 1.260000e-32 152.0
47 TraesCS2B01G226700 chr7A 77.736 265 44 8 1 265 697110173 697109924 1.620000e-31 148.0
48 TraesCS2B01G226700 chr7D 91.228 57 5 0 763 819 556434521 556434465 2.160000e-10 78.7
49 TraesCS2B01G226700 chr6D 88.333 60 7 0 6352 6411 449134041 449133982 1.010000e-08 73.1
50 TraesCS2B01G226700 chr4D 92.308 52 2 2 6360 6409 461784908 461784857 1.010000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G226700 chr2B 217403507 217410732 7225 True 13345.0 13345 100.00000 1 7226 1 chr2B.!!$R1 7225
1 TraesCS2B01G226700 chr2B 452910303 452911030 727 True 1074.0 1074 93.11700 6487 7226 1 chr2B.!!$R2 739
2 TraesCS2B01G226700 chr2B 776456187 776456907 720 False 1038.0 1038 92.52700 6492 7225 1 chr2B.!!$F2 733
3 TraesCS2B01G226700 chr2A 171951205 171957434 6229 True 2321.5 7033 93.54975 343 6487 4 chr2A.!!$R1 6144
4 TraesCS2B01G226700 chr2D 160601151 160607476 6325 True 1887.8 6938 94.08260 343 6337 5 chr2D.!!$R2 5994
5 TraesCS2B01G226700 chr7B 191892727 191893435 708 False 1092.0 1092 94.31300 6507 7226 1 chr7B.!!$F1 719
6 TraesCS2B01G226700 chr7B 498598916 498599645 729 False 1070.0 1070 92.99200 6487 7226 1 chr7B.!!$F2 739
7 TraesCS2B01G226700 chr7B 739379421 739380150 729 True 1064.0 1064 92.85700 6487 7226 1 chr7B.!!$R1 739
8 TraesCS2B01G226700 chr1B 94009258 94009974 716 True 1085.0 1085 93.83600 6499 7226 1 chr1B.!!$R1 727
9 TraesCS2B01G226700 chr1B 643025077 643025801 724 True 1083.0 1083 93.48700 6492 7226 1 chr1B.!!$R2 734
10 TraesCS2B01G226700 chrUn 263185420 263186150 730 True 1081.0 1081 93.27100 6487 7226 1 chrUn.!!$R2 739
11 TraesCS2B01G226700 chrUn 50437481 50438211 730 False 1075.0 1075 93.13600 6487 7226 1 chrUn.!!$F1 739
12 TraesCS2B01G226700 chr4A 670558819 670559549 730 False 1059.0 1059 92.73200 6487 7226 1 chr4A.!!$F2 739
13 TraesCS2B01G226700 chr4B 655052534 655053258 724 False 1055.0 1055 92.80900 6489 7223 1 chr4B.!!$F1 734
14 TraesCS2B01G226700 chr6B 26217865 26218589 724 True 1044.0 1044 92.53700 6492 7226 1 chr6B.!!$R1 734
15 TraesCS2B01G226700 chr5B 678159968 678160704 736 True 856.0 856 87.78500 6492 7226 1 chr5B.!!$R3 734
16 TraesCS2B01G226700 chr5B 510504797 510505321 524 False 307.0 307 77.50900 6694 7226 1 chr5B.!!$F2 532
17 TraesCS2B01G226700 chr3B 786497252 786497752 500 False 745.0 745 93.33300 6483 6991 1 chr3B.!!$F3 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.031178 ACGCGTTCCTTTGTCTACGT 59.969 50.0 5.58 0.0 36.45 3.57 F
108 109 0.041576 CGAACTGCGGCATGATGATG 60.042 55.0 1.75 0.0 36.03 3.07 F
304 305 0.111061 TGCTCTGACAAATGGCCTGT 59.889 50.0 3.32 0.0 0.00 4.00 F
1396 1425 0.035439 GGATCCAACTCCCTGCGAAA 60.035 55.0 6.95 0.0 0.00 3.46 F
1783 1818 0.326264 GAGCTGGTGGTCCATTCACT 59.674 55.0 0.00 0.0 43.43 3.41 F
1984 2145 0.901827 TCTCCATAGCAACGCCTGAA 59.098 50.0 0.00 0.0 0.00 3.02 F
3219 3402 0.947244 CAACTTTCTGAAGGCTGCGT 59.053 50.0 0.00 0.0 37.19 5.24 F
5148 5331 0.037590 GGTGGGCACAGTACCAATGA 59.962 55.0 0.00 0.0 38.73 2.57 F
5709 5892 0.524862 GTCAATGCTTGTGCCTCCAG 59.475 55.0 0.00 0.0 38.71 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1067 0.533755 GAATCTGGTGCGGGATCTGG 60.534 60.000 0.00 0.00 0.00 3.86 R
1198 1227 0.905337 GATCCCGATCCCGATCCCTT 60.905 60.000 5.67 0.00 38.22 3.95 R
1586 1615 0.909623 GGGGCTTGGCTTGTACTAGA 59.090 55.000 8.60 0.00 0.00 2.43 R
3206 3389 0.179059 TTCAACACGCAGCCTTCAGA 60.179 50.000 0.00 0.00 0.00 3.27 R
3426 3609 1.069022 CCTTCGCCAATGTCACTTGTG 60.069 52.381 0.00 0.00 0.00 3.33 R
3790 3973 2.599578 AAGCCTGGCTGCCTGTTG 60.600 61.111 24.16 8.72 39.62 3.33 R
5199 5382 0.693049 CCCACCAGAAAGCCTAGTGT 59.307 55.000 0.00 0.00 33.47 3.55 R
6031 6214 0.243636 CATGGCCGTGGAAGAAAACC 59.756 55.000 17.90 0.00 0.00 3.27 R
6935 7432 1.067846 CGTTCCGTCTTCCAGATGTCA 60.068 52.381 0.00 0.00 29.27 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.658994 TTTGACGCGTTCCTTTGTCT 58.341 45.000 15.53 0.00 32.64 3.41
20 21 2.512485 TTGACGCGTTCCTTTGTCTA 57.488 45.000 15.53 0.00 32.64 2.59
21 22 1.774639 TGACGCGTTCCTTTGTCTAC 58.225 50.000 15.53 0.00 32.64 2.59
22 23 0.706729 GACGCGTTCCTTTGTCTACG 59.293 55.000 15.53 0.00 37.09 3.51
23 24 0.031178 ACGCGTTCCTTTGTCTACGT 59.969 50.000 5.58 0.00 36.45 3.57
24 25 0.433492 CGCGTTCCTTTGTCTACGTG 59.567 55.000 0.00 0.00 38.02 4.49
25 26 1.494824 GCGTTCCTTTGTCTACGTGT 58.505 50.000 0.00 0.00 36.45 4.49
26 27 1.454653 GCGTTCCTTTGTCTACGTGTC 59.545 52.381 0.00 0.00 36.45 3.67
27 28 2.056577 CGTTCCTTTGTCTACGTGTCC 58.943 52.381 0.00 0.00 0.00 4.02
28 29 2.288030 CGTTCCTTTGTCTACGTGTCCT 60.288 50.000 0.00 0.00 0.00 3.85
29 30 3.725490 GTTCCTTTGTCTACGTGTCCTT 58.275 45.455 0.00 0.00 0.00 3.36
30 31 3.655276 TCCTTTGTCTACGTGTCCTTC 57.345 47.619 0.00 0.00 0.00 3.46
31 32 2.298163 TCCTTTGTCTACGTGTCCTTCC 59.702 50.000 0.00 0.00 0.00 3.46
32 33 2.299297 CCTTTGTCTACGTGTCCTTCCT 59.701 50.000 0.00 0.00 0.00 3.36
33 34 3.244112 CCTTTGTCTACGTGTCCTTCCTT 60.244 47.826 0.00 0.00 0.00 3.36
34 35 4.377897 CTTTGTCTACGTGTCCTTCCTTT 58.622 43.478 0.00 0.00 0.00 3.11
35 36 4.411256 TTGTCTACGTGTCCTTCCTTTT 57.589 40.909 0.00 0.00 0.00 2.27
36 37 3.724374 TGTCTACGTGTCCTTCCTTTTG 58.276 45.455 0.00 0.00 0.00 2.44
37 38 3.385433 TGTCTACGTGTCCTTCCTTTTGA 59.615 43.478 0.00 0.00 0.00 2.69
38 39 4.039973 TGTCTACGTGTCCTTCCTTTTGAT 59.960 41.667 0.00 0.00 0.00 2.57
39 40 4.626172 GTCTACGTGTCCTTCCTTTTGATC 59.374 45.833 0.00 0.00 0.00 2.92
40 41 2.413837 ACGTGTCCTTCCTTTTGATCG 58.586 47.619 0.00 0.00 0.00 3.69
41 42 1.128692 CGTGTCCTTCCTTTTGATCGC 59.871 52.381 0.00 0.00 0.00 4.58
42 43 1.468914 GTGTCCTTCCTTTTGATCGCC 59.531 52.381 0.00 0.00 0.00 5.54
43 44 0.727398 GTCCTTCCTTTTGATCGCCG 59.273 55.000 0.00 0.00 0.00 6.46
44 45 0.611200 TCCTTCCTTTTGATCGCCGA 59.389 50.000 0.00 0.00 0.00 5.54
45 46 1.002659 TCCTTCCTTTTGATCGCCGAA 59.997 47.619 0.00 0.00 0.00 4.30
46 47 1.130561 CCTTCCTTTTGATCGCCGAAC 59.869 52.381 0.00 0.00 0.00 3.95
47 48 2.076863 CTTCCTTTTGATCGCCGAACT 58.923 47.619 0.00 0.00 0.00 3.01
48 49 2.178912 TCCTTTTGATCGCCGAACTT 57.821 45.000 0.00 0.00 0.00 2.66
49 50 2.500229 TCCTTTTGATCGCCGAACTTT 58.500 42.857 0.00 0.00 0.00 2.66
50 51 2.482721 TCCTTTTGATCGCCGAACTTTC 59.517 45.455 0.00 0.00 0.00 2.62
65 66 6.153212 CGAACTTTCGTGTATGTTTGATCT 57.847 37.500 3.13 0.00 45.09 2.75
66 67 6.234213 CGAACTTTCGTGTATGTTTGATCTC 58.766 40.000 3.13 0.00 45.09 2.75
67 68 6.481954 AACTTTCGTGTATGTTTGATCTCC 57.518 37.500 0.00 0.00 0.00 3.71
68 69 4.625742 ACTTTCGTGTATGTTTGATCTCCG 59.374 41.667 0.00 0.00 0.00 4.63
69 70 4.443913 TTCGTGTATGTTTGATCTCCGA 57.556 40.909 0.00 0.00 0.00 4.55
70 71 4.443913 TCGTGTATGTTTGATCTCCGAA 57.556 40.909 0.00 0.00 0.00 4.30
71 72 4.171005 TCGTGTATGTTTGATCTCCGAAC 58.829 43.478 0.00 0.00 39.19 3.95
72 73 4.082408 TCGTGTATGTTTGATCTCCGAACT 60.082 41.667 0.00 0.00 39.42 3.01
73 74 5.124297 TCGTGTATGTTTGATCTCCGAACTA 59.876 40.000 0.00 0.00 39.42 2.24
74 75 5.977725 CGTGTATGTTTGATCTCCGAACTAT 59.022 40.000 0.00 0.00 39.42 2.12
75 76 6.074835 CGTGTATGTTTGATCTCCGAACTATG 60.075 42.308 0.00 0.00 39.42 2.23
76 77 6.201044 GTGTATGTTTGATCTCCGAACTATGG 59.799 42.308 0.00 0.00 39.42 2.74
77 78 3.531538 TGTTTGATCTCCGAACTATGGC 58.468 45.455 0.00 0.00 39.42 4.40
78 79 3.055458 TGTTTGATCTCCGAACTATGGCA 60.055 43.478 0.00 0.00 39.42 4.92
79 80 4.130118 GTTTGATCTCCGAACTATGGCAT 58.870 43.478 4.88 4.88 36.45 4.40
80 81 3.391506 TGATCTCCGAACTATGGCATG 57.608 47.619 10.98 2.76 0.00 4.06
81 82 2.037641 TGATCTCCGAACTATGGCATGG 59.962 50.000 10.98 10.21 0.00 3.66
82 83 1.496060 TCTCCGAACTATGGCATGGT 58.504 50.000 11.04 11.04 0.00 3.55
83 84 1.138859 TCTCCGAACTATGGCATGGTG 59.861 52.381 17.64 5.82 0.00 4.17
84 85 1.138859 CTCCGAACTATGGCATGGTGA 59.861 52.381 17.64 9.48 0.00 4.02
85 86 1.768275 TCCGAACTATGGCATGGTGAT 59.232 47.619 17.64 2.26 0.00 3.06
86 87 2.146342 CCGAACTATGGCATGGTGATC 58.854 52.381 17.64 10.99 0.00 2.92
87 88 2.485302 CCGAACTATGGCATGGTGATCA 60.485 50.000 17.64 0.00 0.00 2.92
88 89 2.545526 CGAACTATGGCATGGTGATCAC 59.454 50.000 17.64 17.91 0.00 3.06
97 98 3.474806 GGTGATCACCGAACTGCG 58.525 61.111 28.52 0.00 42.29 5.18
106 107 3.798380 CGAACTGCGGCATGATGA 58.202 55.556 1.75 0.00 36.03 2.92
107 108 2.314256 CGAACTGCGGCATGATGAT 58.686 52.632 1.75 0.00 36.03 2.45
108 109 0.041576 CGAACTGCGGCATGATGATG 60.042 55.000 1.75 0.00 36.03 3.07
109 110 0.309922 GAACTGCGGCATGATGATGG 59.690 55.000 1.75 0.00 0.00 3.51
116 117 2.711711 GCATGATGATGGCCGAACT 58.288 52.632 0.00 0.00 0.00 3.01
117 118 1.027357 GCATGATGATGGCCGAACTT 58.973 50.000 0.00 0.00 0.00 2.66
118 119 1.268896 GCATGATGATGGCCGAACTTG 60.269 52.381 0.00 0.00 0.00 3.16
119 120 2.019249 CATGATGATGGCCGAACTTGT 58.981 47.619 0.00 0.00 0.00 3.16
120 121 1.452110 TGATGATGGCCGAACTTGTG 58.548 50.000 0.00 0.00 0.00 3.33
121 122 0.734889 GATGATGGCCGAACTTGTGG 59.265 55.000 0.00 0.00 0.00 4.17
144 145 2.307934 TTTTTGGCAGCAGGAAACAC 57.692 45.000 0.00 0.00 0.00 3.32
145 146 1.189752 TTTTGGCAGCAGGAAACACA 58.810 45.000 0.00 0.00 0.00 3.72
146 147 1.189752 TTTGGCAGCAGGAAACACAA 58.810 45.000 0.00 0.00 0.00 3.33
147 148 0.746063 TTGGCAGCAGGAAACACAAG 59.254 50.000 0.00 0.00 0.00 3.16
148 149 0.395586 TGGCAGCAGGAAACACAAGT 60.396 50.000 0.00 0.00 0.00 3.16
149 150 0.746659 GGCAGCAGGAAACACAAGTT 59.253 50.000 0.00 0.00 40.40 2.66
165 166 9.659830 AAACACAAGTTTGAATTTATAGACGTC 57.340 29.630 7.70 7.70 45.79 4.34
166 167 8.603242 ACACAAGTTTGAATTTATAGACGTCT 57.397 30.769 23.66 23.66 0.00 4.18
167 168 9.701098 ACACAAGTTTGAATTTATAGACGTCTA 57.299 29.630 26.55 26.55 0.00 2.59
171 172 8.943909 AGTTTGAATTTATAGACGTCTAAGGG 57.056 34.615 27.90 0.00 31.39 3.95
172 173 7.494952 AGTTTGAATTTATAGACGTCTAAGGGC 59.505 37.037 27.90 15.51 31.39 5.19
173 174 5.850614 TGAATTTATAGACGTCTAAGGGCC 58.149 41.667 27.90 15.72 31.39 5.80
174 175 3.996150 TTTATAGACGTCTAAGGGCCG 57.004 47.619 27.90 0.00 31.39 6.13
175 176 2.936919 TATAGACGTCTAAGGGCCGA 57.063 50.000 27.90 6.11 31.39 5.54
176 177 2.062971 ATAGACGTCTAAGGGCCGAA 57.937 50.000 27.90 5.33 31.39 4.30
177 178 1.838112 TAGACGTCTAAGGGCCGAAA 58.162 50.000 22.74 0.00 0.00 3.46
178 179 0.245813 AGACGTCTAAGGGCCGAAAC 59.754 55.000 18.46 0.00 0.00 2.78
179 180 0.738762 GACGTCTAAGGGCCGAAACC 60.739 60.000 8.70 0.00 0.00 3.27
180 181 1.190178 ACGTCTAAGGGCCGAAACCT 61.190 55.000 0.00 0.00 40.96 3.50
181 182 0.739813 CGTCTAAGGGCCGAAACCTG 60.740 60.000 0.00 0.00 38.63 4.00
182 183 0.392595 GTCTAAGGGCCGAAACCTGG 60.393 60.000 0.00 0.00 38.63 4.45
183 184 1.077716 CTAAGGGCCGAAACCTGGG 60.078 63.158 0.00 0.00 38.63 4.45
184 185 2.552231 CTAAGGGCCGAAACCTGGGG 62.552 65.000 0.00 0.00 38.63 4.96
204 205 3.017581 GCCACTGGGGGACTGGAT 61.018 66.667 0.00 0.00 37.04 3.41
205 206 3.049080 GCCACTGGGGGACTGGATC 62.049 68.421 0.00 0.00 37.04 3.36
206 207 2.735772 CCACTGGGGGACTGGATCG 61.736 68.421 0.00 0.00 0.00 3.69
207 208 3.083997 ACTGGGGGACTGGATCGC 61.084 66.667 0.00 0.00 39.56 4.58
213 214 3.917760 GGACTGGATCGCCCCGAG 61.918 72.222 0.00 0.00 39.91 4.63
214 215 3.917760 GACTGGATCGCCCCGAGG 61.918 72.222 0.00 0.00 39.91 4.63
243 244 2.107950 AAAAGCCAGCGCATACTACA 57.892 45.000 11.47 0.00 37.52 2.74
244 245 2.107950 AAAGCCAGCGCATACTACAA 57.892 45.000 11.47 0.00 37.52 2.41
245 246 2.107950 AAGCCAGCGCATACTACAAA 57.892 45.000 11.47 0.00 37.52 2.83
246 247 2.107950 AGCCAGCGCATACTACAAAA 57.892 45.000 11.47 0.00 37.52 2.44
247 248 1.737793 AGCCAGCGCATACTACAAAAC 59.262 47.619 11.47 0.00 37.52 2.43
248 249 1.529010 GCCAGCGCATACTACAAAACG 60.529 52.381 11.47 0.00 34.03 3.60
249 250 1.529010 CCAGCGCATACTACAAAACGC 60.529 52.381 11.47 0.00 46.20 4.84
250 251 3.959520 GCGCATACTACAAAACGCA 57.040 47.368 0.30 0.00 45.25 5.24
251 252 2.235238 GCGCATACTACAAAACGCAA 57.765 45.000 0.30 0.00 45.25 4.85
252 253 2.780993 GCGCATACTACAAAACGCAAT 58.219 42.857 0.30 0.00 45.25 3.56
253 254 2.776225 GCGCATACTACAAAACGCAATC 59.224 45.455 0.30 0.00 45.25 2.67
254 255 3.019589 CGCATACTACAAAACGCAATCG 58.980 45.455 0.00 0.00 42.43 3.34
255 256 2.776225 GCATACTACAAAACGCAATCGC 59.224 45.455 0.00 0.00 39.84 4.58
256 257 3.350912 CATACTACAAAACGCAATCGCC 58.649 45.455 0.00 0.00 39.84 5.54
257 258 0.165079 ACTACAAAACGCAATCGCCG 59.835 50.000 0.00 0.00 39.84 6.46
258 259 0.520412 CTACAAAACGCAATCGCCGG 60.520 55.000 0.00 0.00 39.84 6.13
259 260 1.913451 TACAAAACGCAATCGCCGGG 61.913 55.000 2.18 0.00 39.84 5.73
260 261 2.981350 AAAACGCAATCGCCGGGT 60.981 55.556 2.18 0.00 39.84 5.28
261 262 3.262142 AAAACGCAATCGCCGGGTG 62.262 57.895 2.18 0.00 39.84 4.61
289 290 3.106738 CCAATGAGTGGGGATGCTC 57.893 57.895 0.00 0.00 44.64 4.26
290 291 0.549950 CCAATGAGTGGGGATGCTCT 59.450 55.000 0.00 0.00 44.64 4.09
291 292 1.676746 CAATGAGTGGGGATGCTCTG 58.323 55.000 0.00 0.00 0.00 3.35
292 293 1.211212 CAATGAGTGGGGATGCTCTGA 59.789 52.381 0.00 0.00 0.00 3.27
293 294 0.835941 ATGAGTGGGGATGCTCTGAC 59.164 55.000 0.00 0.00 0.00 3.51
294 295 0.545071 TGAGTGGGGATGCTCTGACA 60.545 55.000 0.00 0.00 0.00 3.58
295 296 0.615331 GAGTGGGGATGCTCTGACAA 59.385 55.000 0.00 0.00 0.00 3.18
296 297 1.003580 GAGTGGGGATGCTCTGACAAA 59.996 52.381 0.00 0.00 0.00 2.83
297 298 1.637553 AGTGGGGATGCTCTGACAAAT 59.362 47.619 0.00 0.00 0.00 2.32
298 299 1.747355 GTGGGGATGCTCTGACAAATG 59.253 52.381 0.00 0.00 0.00 2.32
299 300 1.341285 TGGGGATGCTCTGACAAATGG 60.341 52.381 0.00 0.00 0.00 3.16
300 301 0.743097 GGGATGCTCTGACAAATGGC 59.257 55.000 0.00 0.00 0.00 4.40
301 302 0.743097 GGATGCTCTGACAAATGGCC 59.257 55.000 0.00 0.00 0.00 5.36
302 303 1.684248 GGATGCTCTGACAAATGGCCT 60.684 52.381 3.32 0.00 0.00 5.19
303 304 1.404391 GATGCTCTGACAAATGGCCTG 59.596 52.381 3.32 0.00 0.00 4.85
304 305 0.111061 TGCTCTGACAAATGGCCTGT 59.889 50.000 3.32 0.00 0.00 4.00
305 306 1.251251 GCTCTGACAAATGGCCTGTT 58.749 50.000 3.32 0.00 0.00 3.16
306 307 1.200948 GCTCTGACAAATGGCCTGTTC 59.799 52.381 3.32 0.00 0.00 3.18
307 308 1.815003 CTCTGACAAATGGCCTGTTCC 59.185 52.381 3.32 0.00 0.00 3.62
308 309 1.144708 TCTGACAAATGGCCTGTTCCA 59.855 47.619 3.32 0.00 40.97 3.53
310 311 2.165030 CTGACAAATGGCCTGTTCCATC 59.835 50.000 3.32 0.00 45.64 3.51
311 312 1.133025 GACAAATGGCCTGTTCCATCG 59.867 52.381 3.32 0.00 45.64 3.84
312 313 1.271871 ACAAATGGCCTGTTCCATCGA 60.272 47.619 3.32 0.00 45.64 3.59
313 314 1.402968 CAAATGGCCTGTTCCATCGAG 59.597 52.381 3.32 0.00 45.64 4.04
314 315 0.749454 AATGGCCTGTTCCATCGAGC 60.749 55.000 3.32 0.00 45.64 5.03
315 316 1.913951 ATGGCCTGTTCCATCGAGCA 61.914 55.000 3.32 0.00 43.00 4.26
316 317 2.109126 GGCCTGTTCCATCGAGCAC 61.109 63.158 0.00 0.00 0.00 4.40
317 318 1.078848 GCCTGTTCCATCGAGCACT 60.079 57.895 0.00 0.00 0.00 4.40
318 319 0.175760 GCCTGTTCCATCGAGCACTA 59.824 55.000 0.00 0.00 0.00 2.74
319 320 1.927895 CCTGTTCCATCGAGCACTAC 58.072 55.000 0.00 0.00 0.00 2.73
320 321 1.550065 CTGTTCCATCGAGCACTACG 58.450 55.000 0.00 0.00 0.00 3.51
321 322 0.172578 TGTTCCATCGAGCACTACGG 59.827 55.000 0.00 0.00 0.00 4.02
322 323 0.172803 GTTCCATCGAGCACTACGGT 59.827 55.000 0.00 0.00 0.00 4.83
323 324 1.402968 GTTCCATCGAGCACTACGGTA 59.597 52.381 0.00 0.00 0.00 4.02
324 325 1.977056 TCCATCGAGCACTACGGTAT 58.023 50.000 0.00 0.00 0.00 2.73
325 326 3.130280 TCCATCGAGCACTACGGTATA 57.870 47.619 0.00 0.00 0.00 1.47
326 327 2.810274 TCCATCGAGCACTACGGTATAC 59.190 50.000 0.00 0.00 0.00 1.47
327 328 2.095364 CCATCGAGCACTACGGTATACC 60.095 54.545 12.27 12.27 0.00 2.73
328 329 1.597742 TCGAGCACTACGGTATACCC 58.402 55.000 16.47 0.89 0.00 3.69
329 330 1.134128 TCGAGCACTACGGTATACCCA 60.134 52.381 16.47 3.59 0.00 4.51
330 331 1.677576 CGAGCACTACGGTATACCCAA 59.322 52.381 16.47 3.59 0.00 4.12
331 332 2.287427 CGAGCACTACGGTATACCCAAG 60.287 54.545 16.47 15.05 0.00 3.61
332 333 2.692041 GAGCACTACGGTATACCCAAGT 59.308 50.000 16.47 15.66 0.00 3.16
333 334 3.885297 GAGCACTACGGTATACCCAAGTA 59.115 47.826 18.72 13.27 0.00 2.24
334 335 4.477249 AGCACTACGGTATACCCAAGTAT 58.523 43.478 18.72 10.91 42.05 2.12
335 336 4.280174 AGCACTACGGTATACCCAAGTATG 59.720 45.833 18.72 13.83 39.58 2.39
336 337 4.553323 CACTACGGTATACCCAAGTATGC 58.447 47.826 18.72 0.00 39.58 3.14
337 338 4.038282 CACTACGGTATACCCAAGTATGCA 59.962 45.833 18.72 0.00 41.78 3.96
338 339 3.464111 ACGGTATACCCAAGTATGCAC 57.536 47.619 16.47 0.00 41.78 4.57
339 340 2.103601 ACGGTATACCCAAGTATGCACC 59.896 50.000 16.47 0.83 41.78 5.01
340 341 2.103432 CGGTATACCCAAGTATGCACCA 59.897 50.000 16.47 0.00 41.78 4.17
341 342 3.432467 CGGTATACCCAAGTATGCACCAA 60.432 47.826 16.47 0.00 41.78 3.67
365 371 9.604626 CAAAGTTGTTTCAGAGTATTGAAGATC 57.395 33.333 0.00 0.00 38.25 2.75
369 375 8.660373 GTTGTTTCAGAGTATTGAAGATCGATT 58.340 33.333 0.00 0.00 38.25 3.34
418 431 5.120053 GCCCACTAAATTTTCATTCCAAACG 59.880 40.000 0.00 0.00 0.00 3.60
544 557 2.142292 AAACCGGAGAGGCAGGCAAT 62.142 55.000 9.46 0.00 46.52 3.56
574 587 0.399075 GAGAACGGGGTGGGAAAAGA 59.601 55.000 0.00 0.00 0.00 2.52
575 588 0.848053 AGAACGGGGTGGGAAAAGAA 59.152 50.000 0.00 0.00 0.00 2.52
703 719 4.933064 CTAAGCTCGCCGCCCTCG 62.933 72.222 0.00 0.00 40.39 4.63
739 755 4.389576 GAGTTGCCCGCGTTGCAG 62.390 66.667 18.10 0.00 40.35 4.41
852 868 2.042831 GCTGCATCCTCTTTGCCGT 61.043 57.895 0.00 0.00 39.39 5.68
1018 1047 4.082733 GCCAACCCAAATCTTCTACACTTC 60.083 45.833 0.00 0.00 0.00 3.01
1038 1067 1.141234 CTTCGAGGGCCCGTAAGAC 59.859 63.158 22.43 9.25 43.02 3.01
1040 1069 3.072468 CGAGGGCCCGTAAGACCA 61.072 66.667 18.44 0.00 43.02 4.02
1204 1233 2.306384 GGGACACCGGGAAAGGGAT 61.306 63.158 6.32 0.00 35.02 3.85
1205 1234 1.223763 GGACACCGGGAAAGGGATC 59.776 63.158 6.32 0.00 35.02 3.36
1206 1235 1.153429 GACACCGGGAAAGGGATCG 60.153 63.158 6.32 0.00 35.02 3.69
1207 1236 2.189521 CACCGGGAAAGGGATCGG 59.810 66.667 6.32 0.00 46.95 4.18
1208 1237 3.087906 ACCGGGAAAGGGATCGGG 61.088 66.667 6.32 0.00 45.97 5.14
1209 1238 2.766651 CCGGGAAAGGGATCGGGA 60.767 66.667 0.00 0.00 38.93 5.14
1210 1239 2.147387 CCGGGAAAGGGATCGGGAT 61.147 63.158 0.00 0.00 38.93 3.85
1211 1240 1.371558 CGGGAAAGGGATCGGGATC 59.628 63.158 0.00 0.00 37.11 3.36
1212 1241 1.371558 GGGAAAGGGATCGGGATCG 59.628 63.158 2.80 0.00 38.69 3.69
1213 1242 1.371558 GGAAAGGGATCGGGATCGG 59.628 63.158 2.80 0.00 38.69 4.18
1214 1243 1.371558 GAAAGGGATCGGGATCGGG 59.628 63.158 2.80 0.00 38.69 5.14
1215 1244 1.074775 AAAGGGATCGGGATCGGGA 60.075 57.895 2.80 0.00 38.69 5.14
1220 1249 2.680352 ATCGGGATCGGGATCGGG 60.680 66.667 2.80 0.00 38.69 5.14
1335 1364 3.069318 GACGCCGAGACTTCCCCT 61.069 66.667 0.00 0.00 0.00 4.79
1336 1365 2.603776 ACGCCGAGACTTCCCCTT 60.604 61.111 0.00 0.00 0.00 3.95
1337 1366 2.168666 GACGCCGAGACTTCCCCTTT 62.169 60.000 0.00 0.00 0.00 3.11
1339 1368 2.041115 GCCGAGACTTCCCCTTTGC 61.041 63.158 0.00 0.00 0.00 3.68
1342 1371 1.767692 GAGACTTCCCCTTTGCCCA 59.232 57.895 0.00 0.00 0.00 5.36
1396 1425 0.035439 GGATCCAACTCCCTGCGAAA 60.035 55.000 6.95 0.00 0.00 3.46
1436 1465 5.335191 CGTTTTCTCTCTTGGATTTTCTGGG 60.335 44.000 0.00 0.00 0.00 4.45
1472 1501 1.206831 GAGGAGTTTGCGCGGTTTC 59.793 57.895 8.83 0.00 0.00 2.78
1783 1818 0.326264 GAGCTGGTGGTCCATTCACT 59.674 55.000 0.00 0.00 43.43 3.41
1788 1823 3.099905 CTGGTGGTCCATTCACTCTCTA 58.900 50.000 0.00 0.00 43.43 2.43
1791 1826 3.118592 GGTGGTCCATTCACTCTCTAAGG 60.119 52.174 0.00 0.00 35.61 2.69
1811 1846 3.651423 AGGTTACCTCTTAAGTTGCCAGT 59.349 43.478 0.00 0.00 0.00 4.00
1814 1849 5.999600 GGTTACCTCTTAAGTTGCCAGTAAA 59.000 40.000 1.63 0.00 0.00 2.01
1855 1890 7.170393 TGCTACTTTCTATTTAGCAGACAGA 57.830 36.000 0.00 0.00 42.55 3.41
1856 1891 7.786030 TGCTACTTTCTATTTAGCAGACAGAT 58.214 34.615 0.00 0.00 42.55 2.90
1857 1892 7.708322 TGCTACTTTCTATTTAGCAGACAGATG 59.292 37.037 0.00 0.00 42.55 2.90
1858 1893 7.708752 GCTACTTTCTATTTAGCAGACAGATGT 59.291 37.037 0.00 0.00 38.50 3.06
1861 1896 9.539825 ACTTTCTATTTAGCAGACAGATGTATG 57.460 33.333 3.26 3.26 40.01 2.39
1868 1903 8.822652 TTTAGCAGACAGATGTATGATGTATG 57.177 34.615 11.57 0.00 39.44 2.39
1875 1910 5.186603 ACAGATGTATGATGTATGGCGATCT 59.813 40.000 0.00 0.00 0.00 2.75
1891 1926 5.106317 TGGCGATCTTTTGGTTAGTTGATTC 60.106 40.000 0.00 0.00 0.00 2.52
1897 1932 7.737972 TCTTTTGGTTAGTTGATTCGATTGA 57.262 32.000 0.00 0.00 0.00 2.57
1919 1976 8.681486 TTGATGTATTATCTGCACAAAGCTAT 57.319 30.769 0.00 0.00 45.94 2.97
1923 1980 9.730705 ATGTATTATCTGCACAAAGCTATGTAT 57.269 29.630 0.00 0.00 45.94 2.29
1929 1986 7.072177 TCTGCACAAAGCTATGTATTACAAC 57.928 36.000 0.00 0.00 45.94 3.32
1937 1994 7.661127 AAGCTATGTATTACAACGACACAAA 57.339 32.000 0.00 0.00 0.00 2.83
1939 1996 6.872020 AGCTATGTATTACAACGACACAAACT 59.128 34.615 0.00 0.00 0.00 2.66
1952 2113 5.932303 ACGACACAAACTTCTATAGCAATGT 59.068 36.000 0.00 0.00 0.00 2.71
1973 2134 5.547465 TGTACGGGCATTTAATCTCCATAG 58.453 41.667 0.00 0.00 0.00 2.23
1984 2145 0.901827 TCTCCATAGCAACGCCTGAA 59.098 50.000 0.00 0.00 0.00 3.02
1985 2146 1.486310 TCTCCATAGCAACGCCTGAAT 59.514 47.619 0.00 0.00 0.00 2.57
1989 2150 4.065088 TCCATAGCAACGCCTGAATATTC 58.935 43.478 8.60 8.60 0.00 1.75
1990 2151 4.067896 CCATAGCAACGCCTGAATATTCT 58.932 43.478 16.24 0.00 0.00 2.40
2032 2193 9.712305 AATACATAATACTCCAGTATTCTGCAC 57.288 33.333 18.14 0.00 45.22 4.57
2033 2194 7.124573 ACATAATACTCCAGTATTCTGCACA 57.875 36.000 18.14 3.46 45.22 4.57
2034 2195 7.739825 ACATAATACTCCAGTATTCTGCACAT 58.260 34.615 18.14 5.17 45.22 3.21
2035 2196 7.875041 ACATAATACTCCAGTATTCTGCACATC 59.125 37.037 18.14 0.00 45.22 3.06
2036 2197 5.876651 ATACTCCAGTATTCTGCACATCA 57.123 39.130 0.00 0.00 37.97 3.07
2039 2200 4.256110 CTCCAGTATTCTGCACATCACAA 58.744 43.478 0.00 0.00 40.09 3.33
2040 2201 4.847198 TCCAGTATTCTGCACATCACAAT 58.153 39.130 0.00 0.00 40.09 2.71
2041 2202 5.988287 TCCAGTATTCTGCACATCACAATA 58.012 37.500 0.00 0.00 40.09 1.90
2042 2203 6.413892 TCCAGTATTCTGCACATCACAATAA 58.586 36.000 0.00 0.00 40.09 1.40
2043 2204 7.056006 TCCAGTATTCTGCACATCACAATAAT 58.944 34.615 0.00 0.00 40.09 1.28
2045 2206 7.646526 CCAGTATTCTGCACATCACAATAATTG 59.353 37.037 0.00 0.00 40.09 2.32
2046 2207 7.646526 CAGTATTCTGCACATCACAATAATTGG 59.353 37.037 0.00 0.00 34.79 3.16
2047 2208 5.981088 TTCTGCACATCACAATAATTGGT 57.019 34.783 0.00 0.00 34.12 3.67
2048 2209 7.643569 ATTCTGCACATCACAATAATTGGTA 57.356 32.000 0.00 0.00 34.12 3.25
2049 2210 7.643569 TTCTGCACATCACAATAATTGGTAT 57.356 32.000 0.00 0.00 34.12 2.73
2050 2211 7.263100 TCTGCACATCACAATAATTGGTATC 57.737 36.000 0.00 0.00 34.12 2.24
2051 2212 6.018016 TCTGCACATCACAATAATTGGTATCG 60.018 38.462 0.00 0.00 34.12 2.92
2052 2213 4.911610 GCACATCACAATAATTGGTATCGC 59.088 41.667 0.00 0.00 34.12 4.58
2063 2236 9.864034 CAATAATTGGTATCGCTTACTACTTTG 57.136 33.333 0.00 0.00 0.00 2.77
2105 2278 6.874134 TCTTACAACTTTAGCTTCCACATCTC 59.126 38.462 0.00 0.00 0.00 2.75
2106 2279 5.234466 ACAACTTTAGCTTCCACATCTCT 57.766 39.130 0.00 0.00 0.00 3.10
2109 2282 5.083533 ACTTTAGCTTCCACATCTCTGAG 57.916 43.478 0.00 0.00 0.00 3.35
2113 2286 3.974719 AGCTTCCACATCTCTGAGTAGA 58.025 45.455 4.32 0.00 0.00 2.59
2126 2299 6.393990 TCTCTGAGTAGACTGAAATCAAAGC 58.606 40.000 4.32 0.00 0.00 3.51
2131 2304 7.441836 TGAGTAGACTGAAATCAAAGCAAGTA 58.558 34.615 0.00 0.00 0.00 2.24
2160 2333 4.860802 ATGAATAGTCCACCCAACATCA 57.139 40.909 0.00 0.00 0.00 3.07
2161 2334 4.220693 TGAATAGTCCACCCAACATCAG 57.779 45.455 0.00 0.00 0.00 2.90
2187 2360 8.636213 GTCATGTTGAAATTCCCATGATCTATT 58.364 33.333 20.62 0.00 43.80 1.73
2199 2372 7.749666 TCCCATGATCTATTTCCTTCCTTTAG 58.250 38.462 0.00 0.00 0.00 1.85
2205 2378 6.074698 TCTATTTCCTTCCTTTAGTTGGGG 57.925 41.667 0.00 0.00 0.00 4.96
2223 2403 2.361789 GGGTAAATTGCAGACGGCTAA 58.638 47.619 0.00 0.00 45.15 3.09
2232 2412 3.000041 TGCAGACGGCTAACTTATGTTG 59.000 45.455 0.00 0.00 45.15 3.33
2244 2424 8.301002 GGCTAACTTATGTTGGAATACAAACAA 58.699 33.333 8.76 0.00 41.58 2.83
2268 2448 9.859427 CAATGGAAGCAATACTTTTATTTCTCA 57.141 29.630 0.00 0.00 39.29 3.27
2288 2468 8.737168 TTCTCATTGTGTATCCATCCTTTTAG 57.263 34.615 0.00 0.00 0.00 1.85
2297 2477 5.680594 ATCCATCCTTTTAGCATTGCAAA 57.319 34.783 11.91 6.77 0.00 3.68
2313 2493 1.612726 GCAAATGTGGAGTCAGGCTCT 60.613 52.381 1.07 0.00 43.62 4.09
2389 2569 9.041354 AGTCTCCATCTTGTTCTAGAAATACTT 57.959 33.333 6.78 0.00 0.00 2.24
2428 2611 9.252962 CTGCTAAATATCAAACCATTTTCCATC 57.747 33.333 0.00 0.00 0.00 3.51
2485 2668 5.690865 TCAGTTGGTTTCACAGGAAAGTAT 58.309 37.500 0.00 0.00 43.35 2.12
2538 2721 8.483218 CACAGCTCGAACTTATGAAATATACTG 58.517 37.037 0.00 0.00 0.00 2.74
2707 2890 5.334646 GGCCAAAAGTGTTACAAGTAGTAGC 60.335 44.000 0.00 0.00 33.43 3.58
2778 2961 2.010145 TACACGCCAGAATCTCAAGC 57.990 50.000 0.00 0.00 0.00 4.01
2864 3047 4.216687 GCCATTGTCTAGTACTCGCTATCT 59.783 45.833 0.00 0.00 0.00 1.98
2944 3127 1.071605 CTCACTACGAAGCAACTGCC 58.928 55.000 0.00 0.00 43.38 4.85
3219 3402 0.947244 CAACTTTCTGAAGGCTGCGT 59.053 50.000 0.00 0.00 37.19 5.24
3376 3559 1.327303 GCAACCAACATGAGTTCCCA 58.673 50.000 0.00 0.00 35.28 4.37
3426 3609 5.293079 TGCCTGTAAAAACAACAGAAAATGC 59.707 36.000 4.84 0.63 45.89 3.56
3788 3971 2.027745 GGAACTTCTGCCTCTGTGATGA 60.028 50.000 0.00 0.00 0.00 2.92
3789 3972 3.557898 GGAACTTCTGCCTCTGTGATGAA 60.558 47.826 0.00 0.00 0.00 2.57
3790 3973 3.051081 ACTTCTGCCTCTGTGATGAAC 57.949 47.619 0.00 0.00 0.00 3.18
3948 4131 4.015872 TCATCTGTGAACCTGGGTTTAC 57.984 45.455 17.04 17.04 42.52 2.01
3962 4145 5.235850 TGGGTTTACATGTGAGAAGCTTA 57.764 39.130 9.11 2.31 0.00 3.09
4056 4239 6.294473 TCCTAAATGATGAAGAGGATGAAGC 58.706 40.000 0.00 0.00 31.25 3.86
4112 4295 6.128309 TGTTGATGATGGTCGTACAAATTCTG 60.128 38.462 0.00 0.00 0.00 3.02
4383 4566 6.590677 GGTGACACAAAGAAGATTAGTACCTC 59.409 42.308 8.08 0.00 0.00 3.85
4407 4590 6.051717 CGATATCTTTTCAGGAGGTTGATGT 58.948 40.000 0.34 0.00 0.00 3.06
4496 4679 5.869649 TGATATGAATCCGGACAAGAAGA 57.130 39.130 6.12 0.00 0.00 2.87
4662 4845 2.732412 TCTCAGCTTGCTACACACTC 57.268 50.000 0.00 0.00 0.00 3.51
4679 4862 2.184020 CTCCGGGTCTGTTGATGGCA 62.184 60.000 0.00 0.00 0.00 4.92
4713 4896 6.980397 GCAAAACCTCCTACCATATTTCAATG 59.020 38.462 0.00 0.00 0.00 2.82
4726 4909 3.961477 TTTCAATGTGTTGGTGAGACG 57.039 42.857 0.00 0.00 35.99 4.18
4776 4959 1.145738 ACCATTGGCAGAGTTTCTGGT 59.854 47.619 1.54 0.00 44.43 4.00
4951 5134 6.845272 CTTTCGCTATTGAAGAAAGCTTTC 57.155 37.500 28.21 28.21 42.56 2.62
5148 5331 0.037590 GGTGGGCACAGTACCAATGA 59.962 55.000 0.00 0.00 38.73 2.57
5196 5379 4.844085 TGGAGTTCTGGAGAATACAAAGGA 59.156 41.667 0.00 0.00 36.33 3.36
5199 5382 6.187727 AGTTCTGGAGAATACAAAGGACAA 57.812 37.500 0.00 0.00 36.33 3.18
5202 5385 5.305585 TCTGGAGAATACAAAGGACAACAC 58.694 41.667 0.00 0.00 0.00 3.32
5401 5584 1.886542 GTGGAAGATCTTTTTGCGGGT 59.113 47.619 9.87 0.00 0.00 5.28
5474 5657 1.102978 ATTGGGCATGGCTTTCGTAC 58.897 50.000 19.78 0.61 0.00 3.67
5617 5800 5.220854 GGATCATTTGTTCACTACATTCCCG 60.221 44.000 0.00 0.00 36.44 5.14
5673 5856 4.083003 GCCTTTATTTGACGTGGTTGATGA 60.083 41.667 0.00 0.00 0.00 2.92
5709 5892 0.524862 GTCAATGCTTGTGCCTCCAG 59.475 55.000 0.00 0.00 38.71 3.86
5775 5958 5.067936 AGACATATACTCCTTCAGTGAACGG 59.932 44.000 0.08 8.10 36.43 4.44
5783 5966 0.536460 TTCAGTGAACGGGCCTTTCC 60.536 55.000 18.93 10.85 0.00 3.13
5948 6131 3.802685 GGTTAAATGCGTACTGGCTCTAG 59.197 47.826 0.00 0.00 0.00 2.43
5955 6138 3.066342 TGCGTACTGGCTCTAGTTATCAC 59.934 47.826 0.00 0.00 32.19 3.06
6003 6186 9.788960 CTGCACTTTTTAGTTCTTTCTTAACTT 57.211 29.630 0.00 0.00 38.18 2.66
6031 6214 4.379813 GGCATGTACAAAAGTGATCACAGG 60.380 45.833 27.02 14.94 0.00 4.00
6071 6256 6.968904 CCATGCAGTTTTTGTGTACATATCTC 59.031 38.462 0.00 0.00 0.00 2.75
6100 6285 5.734855 ACAGTATAAATGTAGCTTTGGCG 57.265 39.130 0.00 0.00 44.37 5.69
6148 6334 2.032549 GCAGCATATTAGCGTGACCAAG 60.033 50.000 0.00 0.00 40.15 3.61
6290 6766 6.685828 CGTCATCTGCTTGTGAAGAATATTTG 59.314 38.462 0.00 0.00 30.34 2.32
6297 6773 8.129161 TGCTTGTGAAGAATATTTGTTGTTTG 57.871 30.769 0.00 0.00 0.00 2.93
6299 6775 8.268738 GCTTGTGAAGAATATTTGTTGTTTGAC 58.731 33.333 0.00 0.00 0.00 3.18
6300 6776 9.299963 CTTGTGAAGAATATTTGTTGTTTGACA 57.700 29.630 0.00 0.00 0.00 3.58
6342 6818 7.744087 ATTTTGTGATAGTGCTTACTTGTCA 57.256 32.000 0.00 0.00 0.00 3.58
6343 6819 6.785488 TTTGTGATAGTGCTTACTTGTCAG 57.215 37.500 0.00 0.00 0.00 3.51
6344 6820 5.722021 TGTGATAGTGCTTACTTGTCAGA 57.278 39.130 0.00 0.00 0.00 3.27
6345 6821 5.714047 TGTGATAGTGCTTACTTGTCAGAG 58.286 41.667 0.00 0.00 0.00 3.35
6346 6822 5.476945 TGTGATAGTGCTTACTTGTCAGAGA 59.523 40.000 0.00 0.00 0.00 3.10
6347 6823 6.015434 TGTGATAGTGCTTACTTGTCAGAGAA 60.015 38.462 0.00 0.00 0.00 2.87
6348 6824 6.868864 GTGATAGTGCTTACTTGTCAGAGAAA 59.131 38.462 0.00 0.00 0.00 2.52
6349 6825 7.547370 GTGATAGTGCTTACTTGTCAGAGAAAT 59.453 37.037 0.00 0.00 0.00 2.17
6350 6826 7.547019 TGATAGTGCTTACTTGTCAGAGAAATG 59.453 37.037 0.00 0.00 0.00 2.32
6351 6827 4.999950 AGTGCTTACTTGTCAGAGAAATGG 59.000 41.667 0.00 0.00 0.00 3.16
6352 6828 4.997395 GTGCTTACTTGTCAGAGAAATGGA 59.003 41.667 0.00 0.00 0.00 3.41
6353 6829 5.645497 GTGCTTACTTGTCAGAGAAATGGAT 59.355 40.000 0.00 0.00 0.00 3.41
6354 6830 6.818644 GTGCTTACTTGTCAGAGAAATGGATA 59.181 38.462 0.00 0.00 0.00 2.59
6355 6831 7.334421 GTGCTTACTTGTCAGAGAAATGGATAA 59.666 37.037 0.00 0.00 0.00 1.75
6356 6832 7.882791 TGCTTACTTGTCAGAGAAATGGATAAA 59.117 33.333 0.00 0.00 0.00 1.40
6357 6833 8.730680 GCTTACTTGTCAGAGAAATGGATAAAA 58.269 33.333 0.00 0.00 0.00 1.52
6359 6835 7.454260 ACTTGTCAGAGAAATGGATAAAACC 57.546 36.000 0.00 0.00 0.00 3.27
6360 6836 6.434340 ACTTGTCAGAGAAATGGATAAAACCC 59.566 38.462 0.00 0.00 0.00 4.11
6361 6837 5.886609 TGTCAGAGAAATGGATAAAACCCA 58.113 37.500 0.00 0.00 38.19 4.51
6362 6838 6.493166 TGTCAGAGAAATGGATAAAACCCAT 58.507 36.000 0.00 0.00 45.75 4.00
6380 6856 4.887655 ACCCATTTTATCCATTTCTCCGAC 59.112 41.667 0.00 0.00 0.00 4.79
6392 6868 6.712998 TCCATTTCTCCGACAAGTATTTTCAA 59.287 34.615 0.00 0.00 0.00 2.69
6394 6870 8.028938 CCATTTCTCCGACAAGTATTTTCAAAT 58.971 33.333 0.00 0.00 0.00 2.32
6405 6881 7.393515 ACAAGTATTTTCAAATGGAGGGAGTAC 59.606 37.037 0.00 0.00 0.00 2.73
6406 6882 7.027874 AGTATTTTCAAATGGAGGGAGTACA 57.972 36.000 0.00 0.00 0.00 2.90
6444 6920 8.726068 CGTACTGTGATTATCTGATACTCATCT 58.274 37.037 17.33 8.31 31.93 2.90
6446 6922 7.377398 ACTGTGATTATCTGATACTCATCTGC 58.623 38.462 17.33 8.10 31.87 4.26
6473 6950 9.747898 ACCATAATATAAGAGGTGTCAAAAACA 57.252 29.630 0.00 0.00 34.78 2.83
6490 6967 3.931907 AACACTCTTATATGCCAGGCA 57.068 42.857 18.99 18.99 44.86 4.75
6935 7432 2.558378 CAGATTGTGGTCTGCATCGAT 58.442 47.619 0.00 0.00 39.19 3.59
7002 7504 3.269381 TGGCAGGTATGATTTCCTCCTTT 59.731 43.478 0.00 0.00 30.91 3.11
7052 7554 1.215647 GGAGTTCGATGGCGTGTCT 59.784 57.895 0.00 0.00 38.98 3.41
7203 7708 0.597568 TTTTTCCGATGGCTGCTGTG 59.402 50.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.129607 GTAGACAAAGGAACGCGTCAA 58.870 47.619 14.44 0.00 0.00 3.18
3 4 0.706729 CGTAGACAAAGGAACGCGTC 59.293 55.000 14.44 6.14 0.00 5.19
4 5 0.031178 ACGTAGACAAAGGAACGCGT 59.969 50.000 5.58 5.58 38.87 6.01
5 6 0.433492 CACGTAGACAAAGGAACGCG 59.567 55.000 3.53 3.53 38.87 6.01
6 7 1.454653 GACACGTAGACAAAGGAACGC 59.545 52.381 0.00 0.00 38.87 4.84
7 8 2.056577 GGACACGTAGACAAAGGAACG 58.943 52.381 0.00 0.00 40.99 3.95
8 9 3.382048 AGGACACGTAGACAAAGGAAC 57.618 47.619 0.00 0.00 0.00 3.62
9 10 3.243975 GGAAGGACACGTAGACAAAGGAA 60.244 47.826 0.00 0.00 0.00 3.36
10 11 2.298163 GGAAGGACACGTAGACAAAGGA 59.702 50.000 0.00 0.00 0.00 3.36
11 12 2.299297 AGGAAGGACACGTAGACAAAGG 59.701 50.000 0.00 0.00 0.00 3.11
12 13 3.662247 AGGAAGGACACGTAGACAAAG 57.338 47.619 0.00 0.00 0.00 2.77
13 14 4.411256 AAAGGAAGGACACGTAGACAAA 57.589 40.909 0.00 0.00 0.00 2.83
14 15 4.124238 CAAAAGGAAGGACACGTAGACAA 58.876 43.478 0.00 0.00 0.00 3.18
15 16 3.385433 TCAAAAGGAAGGACACGTAGACA 59.615 43.478 0.00 0.00 0.00 3.41
16 17 3.986277 TCAAAAGGAAGGACACGTAGAC 58.014 45.455 0.00 0.00 0.00 2.59
17 18 4.617530 CGATCAAAAGGAAGGACACGTAGA 60.618 45.833 0.00 0.00 0.00 2.59
18 19 3.612860 CGATCAAAAGGAAGGACACGTAG 59.387 47.826 0.00 0.00 0.00 3.51
19 20 3.581755 CGATCAAAAGGAAGGACACGTA 58.418 45.455 0.00 0.00 0.00 3.57
20 21 2.413837 CGATCAAAAGGAAGGACACGT 58.586 47.619 0.00 0.00 0.00 4.49
21 22 1.128692 GCGATCAAAAGGAAGGACACG 59.871 52.381 0.00 0.00 0.00 4.49
22 23 1.468914 GGCGATCAAAAGGAAGGACAC 59.531 52.381 0.00 0.00 0.00 3.67
23 24 1.821216 GGCGATCAAAAGGAAGGACA 58.179 50.000 0.00 0.00 0.00 4.02
24 25 0.727398 CGGCGATCAAAAGGAAGGAC 59.273 55.000 0.00 0.00 0.00 3.85
25 26 0.611200 TCGGCGATCAAAAGGAAGGA 59.389 50.000 4.99 0.00 0.00 3.36
26 27 1.130561 GTTCGGCGATCAAAAGGAAGG 59.869 52.381 11.76 0.00 0.00 3.46
27 28 2.076863 AGTTCGGCGATCAAAAGGAAG 58.923 47.619 19.04 0.00 0.00 3.46
28 29 2.178912 AGTTCGGCGATCAAAAGGAA 57.821 45.000 19.04 0.00 0.00 3.36
29 30 2.178912 AAGTTCGGCGATCAAAAGGA 57.821 45.000 19.04 0.00 0.00 3.36
30 31 2.724839 CGAAAGTTCGGCGATCAAAAGG 60.725 50.000 19.04 0.00 46.30 3.11
31 32 2.495939 CGAAAGTTCGGCGATCAAAAG 58.504 47.619 19.04 3.46 46.30 2.27
32 33 2.587612 CGAAAGTTCGGCGATCAAAA 57.412 45.000 19.04 0.00 46.30 2.44
43 44 6.534934 GGAGATCAAACATACACGAAAGTTC 58.465 40.000 0.00 0.00 46.40 3.01
44 45 5.120208 CGGAGATCAAACATACACGAAAGTT 59.880 40.000 0.00 0.00 46.40 2.66
45 46 7.012960 TTCGGAGATCAAACATACACGAAAGT 61.013 38.462 0.00 0.00 41.60 2.66
46 47 4.862574 TCGGAGATCAAACATACACGAAAG 59.137 41.667 0.00 0.00 0.00 2.62
47 48 4.811908 TCGGAGATCAAACATACACGAAA 58.188 39.130 0.00 0.00 0.00 3.46
48 49 4.443913 TCGGAGATCAAACATACACGAA 57.556 40.909 0.00 0.00 0.00 3.85
49 50 4.082408 AGTTCGGAGATCAAACATACACGA 60.082 41.667 0.00 0.00 35.04 4.35
50 51 4.174009 AGTTCGGAGATCAAACATACACG 58.826 43.478 0.00 0.00 35.04 4.49
51 52 6.201044 CCATAGTTCGGAGATCAAACATACAC 59.799 42.308 0.00 0.00 35.04 2.90
52 53 6.280643 CCATAGTTCGGAGATCAAACATACA 58.719 40.000 0.00 0.00 35.04 2.29
53 54 5.177696 GCCATAGTTCGGAGATCAAACATAC 59.822 44.000 0.00 0.00 35.04 2.39
54 55 5.163353 TGCCATAGTTCGGAGATCAAACATA 60.163 40.000 0.00 0.00 35.04 2.29
55 56 4.130118 GCCATAGTTCGGAGATCAAACAT 58.870 43.478 0.00 0.00 35.04 2.71
56 57 3.055458 TGCCATAGTTCGGAGATCAAACA 60.055 43.478 0.00 0.00 35.04 2.83
57 58 3.531538 TGCCATAGTTCGGAGATCAAAC 58.468 45.455 0.00 0.00 35.04 2.93
58 59 3.904800 TGCCATAGTTCGGAGATCAAA 57.095 42.857 0.00 0.00 35.04 2.69
59 60 3.494924 CCATGCCATAGTTCGGAGATCAA 60.495 47.826 0.00 0.00 35.04 2.57
60 61 2.037641 CCATGCCATAGTTCGGAGATCA 59.962 50.000 0.00 0.00 35.04 2.92
61 62 2.037772 ACCATGCCATAGTTCGGAGATC 59.962 50.000 0.00 0.00 35.04 2.75
62 63 2.050144 ACCATGCCATAGTTCGGAGAT 58.950 47.619 0.00 0.00 35.04 2.75
63 64 1.138859 CACCATGCCATAGTTCGGAGA 59.861 52.381 0.00 0.00 0.00 3.71
64 65 1.138859 TCACCATGCCATAGTTCGGAG 59.861 52.381 0.00 0.00 0.00 4.63
65 66 1.199615 TCACCATGCCATAGTTCGGA 58.800 50.000 0.00 0.00 0.00 4.55
66 67 2.146342 GATCACCATGCCATAGTTCGG 58.854 52.381 0.00 0.00 0.00 4.30
67 68 2.545526 GTGATCACCATGCCATAGTTCG 59.454 50.000 15.31 0.00 0.00 3.95
89 90 0.041576 CATCATCATGCCGCAGTTCG 60.042 55.000 0.00 0.00 38.08 3.95
90 91 0.309922 CCATCATCATGCCGCAGTTC 59.690 55.000 0.00 0.00 0.00 3.01
91 92 1.731433 GCCATCATCATGCCGCAGTT 61.731 55.000 0.00 0.00 0.00 3.16
92 93 2.191513 GCCATCATCATGCCGCAGT 61.192 57.895 0.00 0.00 0.00 4.40
93 94 2.643272 GCCATCATCATGCCGCAG 59.357 61.111 0.00 0.00 0.00 5.18
94 95 2.908428 GGCCATCATCATGCCGCA 60.908 61.111 0.00 0.00 0.00 5.69
95 96 4.034258 CGGCCATCATCATGCCGC 62.034 66.667 9.35 0.00 40.44 6.53
96 97 1.893335 TTCGGCCATCATCATGCCG 60.893 57.895 15.44 15.44 44.49 5.69
97 98 0.820891 AGTTCGGCCATCATCATGCC 60.821 55.000 2.24 0.00 0.00 4.40
98 99 1.027357 AAGTTCGGCCATCATCATGC 58.973 50.000 2.24 0.00 0.00 4.06
99 100 2.019249 ACAAGTTCGGCCATCATCATG 58.981 47.619 2.24 0.00 0.00 3.07
100 101 2.019249 CACAAGTTCGGCCATCATCAT 58.981 47.619 2.24 0.00 0.00 2.45
101 102 1.452110 CACAAGTTCGGCCATCATCA 58.548 50.000 2.24 0.00 0.00 3.07
102 103 0.734889 CCACAAGTTCGGCCATCATC 59.265 55.000 2.24 0.00 0.00 2.92
103 104 1.315257 GCCACAAGTTCGGCCATCAT 61.315 55.000 2.24 0.00 42.82 2.45
104 105 1.971167 GCCACAAGTTCGGCCATCA 60.971 57.895 2.24 0.00 42.82 3.07
105 106 2.877691 GCCACAAGTTCGGCCATC 59.122 61.111 2.24 0.00 42.82 3.51
125 126 1.552337 TGTGTTTCCTGCTGCCAAAAA 59.448 42.857 0.00 0.00 0.00 1.94
126 127 1.189752 TGTGTTTCCTGCTGCCAAAA 58.810 45.000 0.00 0.00 0.00 2.44
127 128 1.136695 CTTGTGTTTCCTGCTGCCAAA 59.863 47.619 0.00 0.00 0.00 3.28
128 129 0.746063 CTTGTGTTTCCTGCTGCCAA 59.254 50.000 0.00 0.00 0.00 4.52
129 130 0.395586 ACTTGTGTTTCCTGCTGCCA 60.396 50.000 0.00 0.00 0.00 4.92
130 131 0.746659 AACTTGTGTTTCCTGCTGCC 59.253 50.000 0.00 0.00 31.37 4.85
131 132 2.159254 TCAAACTTGTGTTTCCTGCTGC 60.159 45.455 0.00 0.00 43.75 5.25
132 133 3.781079 TCAAACTTGTGTTTCCTGCTG 57.219 42.857 0.00 0.00 43.75 4.41
133 134 5.343307 AATTCAAACTTGTGTTTCCTGCT 57.657 34.783 0.00 0.00 43.75 4.24
134 135 7.713764 ATAAATTCAAACTTGTGTTTCCTGC 57.286 32.000 0.00 0.00 43.75 4.85
137 138 9.113876 CGTCTATAAATTCAAACTTGTGTTTCC 57.886 33.333 0.00 0.00 43.75 3.13
138 139 9.659830 ACGTCTATAAATTCAAACTTGTGTTTC 57.340 29.630 0.00 0.00 43.75 2.78
139 140 9.659830 GACGTCTATAAATTCAAACTTGTGTTT 57.340 29.630 8.70 0.00 46.20 2.83
140 141 9.052759 AGACGTCTATAAATTCAAACTTGTGTT 57.947 29.630 18.46 0.00 38.16 3.32
141 142 8.603242 AGACGTCTATAAATTCAAACTTGTGT 57.397 30.769 18.46 0.00 0.00 3.72
145 146 9.379791 CCCTTAGACGTCTATAAATTCAAACTT 57.620 33.333 25.17 0.00 0.00 2.66
146 147 7.494952 GCCCTTAGACGTCTATAAATTCAAACT 59.505 37.037 25.17 0.00 0.00 2.66
147 148 7.254692 GGCCCTTAGACGTCTATAAATTCAAAC 60.255 40.741 25.17 7.48 0.00 2.93
148 149 6.764560 GGCCCTTAGACGTCTATAAATTCAAA 59.235 38.462 25.17 8.62 0.00 2.69
149 150 6.285990 GGCCCTTAGACGTCTATAAATTCAA 58.714 40.000 25.17 9.33 0.00 2.69
150 151 5.508489 CGGCCCTTAGACGTCTATAAATTCA 60.508 44.000 25.17 8.29 0.00 2.57
151 152 4.922103 CGGCCCTTAGACGTCTATAAATTC 59.078 45.833 25.17 12.33 0.00 2.17
152 153 4.586001 TCGGCCCTTAGACGTCTATAAATT 59.414 41.667 25.17 0.99 0.00 1.82
153 154 4.147321 TCGGCCCTTAGACGTCTATAAAT 58.853 43.478 25.17 1.78 0.00 1.40
154 155 3.554934 TCGGCCCTTAGACGTCTATAAA 58.445 45.455 25.17 12.21 0.00 1.40
155 156 3.213206 TCGGCCCTTAGACGTCTATAA 57.787 47.619 25.17 12.94 0.00 0.98
156 157 2.936919 TCGGCCCTTAGACGTCTATA 57.063 50.000 25.17 14.82 0.00 1.31
157 158 2.062971 TTCGGCCCTTAGACGTCTAT 57.937 50.000 25.17 4.18 0.00 1.98
158 159 1.474077 GTTTCGGCCCTTAGACGTCTA 59.526 52.381 21.25 21.25 0.00 2.59
159 160 0.245813 GTTTCGGCCCTTAGACGTCT 59.754 55.000 23.66 23.66 0.00 4.18
160 161 0.738762 GGTTTCGGCCCTTAGACGTC 60.739 60.000 7.70 7.70 0.00 4.34
161 162 1.190178 AGGTTTCGGCCCTTAGACGT 61.190 55.000 0.00 0.00 0.00 4.34
162 163 0.739813 CAGGTTTCGGCCCTTAGACG 60.740 60.000 0.00 0.00 0.00 4.18
163 164 0.392595 CCAGGTTTCGGCCCTTAGAC 60.393 60.000 0.00 0.00 0.00 2.59
164 165 1.559065 CCCAGGTTTCGGCCCTTAGA 61.559 60.000 0.00 0.00 0.00 2.10
165 166 1.077716 CCCAGGTTTCGGCCCTTAG 60.078 63.158 0.00 0.00 0.00 2.18
166 167 2.608550 CCCCAGGTTTCGGCCCTTA 61.609 63.158 0.00 0.00 0.00 2.69
167 168 3.979497 CCCCAGGTTTCGGCCCTT 61.979 66.667 0.00 0.00 0.00 3.95
187 188 3.017581 ATCCAGTCCCCCAGTGGC 61.018 66.667 2.61 0.00 44.70 5.01
188 189 2.735772 CGATCCAGTCCCCCAGTGG 61.736 68.421 0.63 0.63 46.30 4.00
189 190 2.903357 CGATCCAGTCCCCCAGTG 59.097 66.667 0.00 0.00 0.00 3.66
190 191 3.083997 GCGATCCAGTCCCCCAGT 61.084 66.667 0.00 0.00 0.00 4.00
191 192 3.866582 GGCGATCCAGTCCCCCAG 61.867 72.222 0.00 0.00 0.00 4.45
196 197 3.917760 CTCGGGGCGATCCAGTCC 61.918 72.222 0.00 0.00 34.61 3.85
197 198 3.917760 CCTCGGGGCGATCCAGTC 61.918 72.222 0.00 0.00 34.61 3.51
223 224 2.432444 TGTAGTATGCGCTGGCTTTTT 58.568 42.857 9.73 0.00 40.82 1.94
224 225 2.107950 TGTAGTATGCGCTGGCTTTT 57.892 45.000 9.73 0.00 40.82 2.27
225 226 2.107950 TTGTAGTATGCGCTGGCTTT 57.892 45.000 9.73 0.00 40.82 3.51
226 227 2.107950 TTTGTAGTATGCGCTGGCTT 57.892 45.000 9.73 0.00 40.82 4.35
227 228 1.737793 GTTTTGTAGTATGCGCTGGCT 59.262 47.619 9.73 6.18 40.82 4.75
228 229 1.529010 CGTTTTGTAGTATGCGCTGGC 60.529 52.381 9.73 0.00 40.52 4.85
229 230 1.529010 GCGTTTTGTAGTATGCGCTGG 60.529 52.381 9.73 0.00 41.37 4.85
230 231 1.127766 TGCGTTTTGTAGTATGCGCTG 59.872 47.619 9.73 0.00 44.34 5.18
231 232 1.434555 TGCGTTTTGTAGTATGCGCT 58.565 45.000 9.73 0.00 44.34 5.92
232 233 2.235238 TTGCGTTTTGTAGTATGCGC 57.765 45.000 0.00 0.00 44.29 6.09
233 234 3.019589 CGATTGCGTTTTGTAGTATGCG 58.980 45.455 0.00 0.00 0.00 4.73
234 235 2.776225 GCGATTGCGTTTTGTAGTATGC 59.224 45.455 0.00 0.00 40.36 3.14
235 236 3.350912 GGCGATTGCGTTTTGTAGTATG 58.649 45.455 0.00 0.00 44.10 2.39
236 237 2.029970 CGGCGATTGCGTTTTGTAGTAT 59.970 45.455 0.00 0.00 44.10 2.12
237 238 1.390803 CGGCGATTGCGTTTTGTAGTA 59.609 47.619 0.00 0.00 44.10 1.82
238 239 0.165079 CGGCGATTGCGTTTTGTAGT 59.835 50.000 0.00 0.00 44.10 2.73
239 240 0.520412 CCGGCGATTGCGTTTTGTAG 60.520 55.000 9.30 0.00 44.10 2.74
240 241 1.498166 CCGGCGATTGCGTTTTGTA 59.502 52.632 9.30 0.00 44.10 2.41
241 242 2.254051 CCGGCGATTGCGTTTTGT 59.746 55.556 9.30 0.00 44.10 2.83
242 243 2.503809 CCCGGCGATTGCGTTTTG 60.504 61.111 9.30 0.00 44.10 2.44
243 244 2.981350 ACCCGGCGATTGCGTTTT 60.981 55.556 9.30 0.00 44.10 2.43
244 245 3.732892 CACCCGGCGATTGCGTTT 61.733 61.111 9.30 0.00 44.10 3.60
264 265 4.820744 CCACTCATTGGGCCCCGG 62.821 72.222 22.27 8.93 42.54 5.73
271 272 0.549950 AGAGCATCCCCACTCATTGG 59.450 55.000 0.00 0.00 46.47 3.16
272 273 1.211212 TCAGAGCATCCCCACTCATTG 59.789 52.381 0.00 0.00 35.28 2.82
273 274 1.211457 GTCAGAGCATCCCCACTCATT 59.789 52.381 0.00 0.00 35.28 2.57
274 275 0.835941 GTCAGAGCATCCCCACTCAT 59.164 55.000 0.00 0.00 35.28 2.90
275 276 0.545071 TGTCAGAGCATCCCCACTCA 60.545 55.000 0.00 0.00 35.28 3.41
276 277 0.615331 TTGTCAGAGCATCCCCACTC 59.385 55.000 0.00 0.00 33.66 3.51
277 278 1.067295 TTTGTCAGAGCATCCCCACT 58.933 50.000 0.00 0.00 33.66 4.00
278 279 1.747355 CATTTGTCAGAGCATCCCCAC 59.253 52.381 0.00 0.00 33.66 4.61
279 280 1.341285 CCATTTGTCAGAGCATCCCCA 60.341 52.381 0.00 0.00 33.66 4.96
280 281 1.396653 CCATTTGTCAGAGCATCCCC 58.603 55.000 0.00 0.00 33.66 4.81
281 282 0.743097 GCCATTTGTCAGAGCATCCC 59.257 55.000 0.00 0.00 33.66 3.85
282 283 0.743097 GGCCATTTGTCAGAGCATCC 59.257 55.000 0.00 0.00 33.66 3.51
283 284 1.404391 CAGGCCATTTGTCAGAGCATC 59.596 52.381 5.01 0.00 0.00 3.91
284 285 1.272313 ACAGGCCATTTGTCAGAGCAT 60.272 47.619 5.01 0.00 0.00 3.79
285 286 0.111061 ACAGGCCATTTGTCAGAGCA 59.889 50.000 5.01 0.00 0.00 4.26
286 287 1.200948 GAACAGGCCATTTGTCAGAGC 59.799 52.381 5.01 0.00 0.00 4.09
287 288 1.815003 GGAACAGGCCATTTGTCAGAG 59.185 52.381 5.01 0.00 0.00 3.35
288 289 1.144708 TGGAACAGGCCATTTGTCAGA 59.855 47.619 5.01 0.00 31.66 3.27
289 290 1.619654 TGGAACAGGCCATTTGTCAG 58.380 50.000 5.01 0.00 31.66 3.51
290 291 2.307496 ATGGAACAGGCCATTTGTCA 57.693 45.000 5.01 0.00 46.29 3.58
303 304 0.172803 ACCGTAGTGCTCGATGGAAC 59.827 55.000 13.26 0.00 0.00 3.62
304 305 1.753930 TACCGTAGTGCTCGATGGAA 58.246 50.000 13.26 0.00 0.00 3.53
305 306 1.977056 ATACCGTAGTGCTCGATGGA 58.023 50.000 13.26 0.00 0.00 3.41
306 307 2.095364 GGTATACCGTAGTGCTCGATGG 60.095 54.545 6.06 5.68 0.00 3.51
307 308 2.095364 GGGTATACCGTAGTGCTCGATG 60.095 54.545 15.80 0.00 36.71 3.84
308 309 2.157738 GGGTATACCGTAGTGCTCGAT 58.842 52.381 15.80 0.00 36.71 3.59
309 310 1.134128 TGGGTATACCGTAGTGCTCGA 60.134 52.381 15.80 0.00 44.64 4.04
310 311 1.311859 TGGGTATACCGTAGTGCTCG 58.688 55.000 15.80 0.00 44.64 5.03
311 312 2.692041 ACTTGGGTATACCGTAGTGCTC 59.308 50.000 20.66 5.45 44.64 4.26
312 313 2.743553 ACTTGGGTATACCGTAGTGCT 58.256 47.619 20.66 3.32 44.64 4.40
313 314 4.553323 CATACTTGGGTATACCGTAGTGC 58.447 47.826 26.07 10.86 44.64 4.40
314 315 4.038282 TGCATACTTGGGTATACCGTAGTG 59.962 45.833 26.07 16.80 44.64 2.74
315 316 4.038402 GTGCATACTTGGGTATACCGTAGT 59.962 45.833 23.25 23.25 44.64 2.73
316 317 4.553323 GTGCATACTTGGGTATACCGTAG 58.447 47.826 15.80 16.12 44.64 3.51
317 318 3.321682 GGTGCATACTTGGGTATACCGTA 59.678 47.826 15.80 12.34 44.64 4.02
318 319 2.103601 GGTGCATACTTGGGTATACCGT 59.896 50.000 15.80 10.56 44.64 4.83
319 320 2.103432 TGGTGCATACTTGGGTATACCG 59.897 50.000 15.80 4.84 44.64 4.02
320 321 3.849563 TGGTGCATACTTGGGTATACC 57.150 47.619 13.99 13.99 37.47 2.73
321 322 5.190677 ACTTTGGTGCATACTTGGGTATAC 58.809 41.667 0.00 0.00 36.60 1.47
322 323 5.444744 ACTTTGGTGCATACTTGGGTATA 57.555 39.130 0.00 0.00 36.60 1.47
323 324 4.316025 ACTTTGGTGCATACTTGGGTAT 57.684 40.909 0.00 0.00 39.02 2.73
324 325 3.799432 ACTTTGGTGCATACTTGGGTA 57.201 42.857 0.00 0.00 0.00 3.69
325 326 2.627699 CAACTTTGGTGCATACTTGGGT 59.372 45.455 0.00 0.00 0.00 4.51
326 327 2.627699 ACAACTTTGGTGCATACTTGGG 59.372 45.455 0.00 0.00 0.00 4.12
327 328 4.320608 AACAACTTTGGTGCATACTTGG 57.679 40.909 0.00 0.00 0.00 3.61
328 329 5.347342 TGAAACAACTTTGGTGCATACTTG 58.653 37.500 0.00 0.00 25.27 3.16
329 330 5.359576 TCTGAAACAACTTTGGTGCATACTT 59.640 36.000 0.00 0.00 31.73 2.24
330 331 4.887071 TCTGAAACAACTTTGGTGCATACT 59.113 37.500 0.00 0.00 31.73 2.12
331 332 5.181690 TCTGAAACAACTTTGGTGCATAC 57.818 39.130 0.00 0.00 31.73 2.39
332 333 4.887071 ACTCTGAAACAACTTTGGTGCATA 59.113 37.500 0.00 0.00 31.73 3.14
333 334 3.701040 ACTCTGAAACAACTTTGGTGCAT 59.299 39.130 0.00 0.00 31.73 3.96
334 335 3.088532 ACTCTGAAACAACTTTGGTGCA 58.911 40.909 0.00 0.00 31.17 4.57
335 336 3.782889 ACTCTGAAACAACTTTGGTGC 57.217 42.857 0.00 0.00 0.00 5.01
336 337 7.026631 TCAATACTCTGAAACAACTTTGGTG 57.973 36.000 0.00 0.00 0.00 4.17
337 338 7.556275 TCTTCAATACTCTGAAACAACTTTGGT 59.444 33.333 0.00 0.00 34.96 3.67
338 339 7.930217 TCTTCAATACTCTGAAACAACTTTGG 58.070 34.615 0.00 0.00 34.96 3.28
339 340 9.604626 GATCTTCAATACTCTGAAACAACTTTG 57.395 33.333 0.00 0.00 34.96 2.77
340 341 8.499162 CGATCTTCAATACTCTGAAACAACTTT 58.501 33.333 0.00 0.00 34.96 2.66
341 342 7.872993 TCGATCTTCAATACTCTGAAACAACTT 59.127 33.333 0.00 0.00 34.96 2.66
365 371 3.566322 ACCTACGGAGAAGAGATGAATCG 59.434 47.826 0.00 0.00 0.00 3.34
369 375 4.462133 CCTAACCTACGGAGAAGAGATGA 58.538 47.826 0.00 0.00 0.00 2.92
544 557 1.301401 CCGTTCTCCTCGTGCCAAA 60.301 57.895 0.00 0.00 0.00 3.28
574 587 1.216930 CCTCCCCCGGGTAATCATTTT 59.783 52.381 21.85 0.00 36.47 1.82
575 588 0.850784 CCTCCCCCGGGTAATCATTT 59.149 55.000 21.85 0.00 36.47 2.32
705 721 3.862402 CCTCGTCGTCGTCGGAGG 61.862 72.222 11.74 11.45 38.44 4.30
709 725 1.509370 CAACTCCTCGTCGTCGTCG 60.509 63.158 5.50 5.50 38.33 5.12
710 726 1.796749 GCAACTCCTCGTCGTCGTC 60.797 63.158 1.33 0.00 38.33 4.20
711 727 2.254651 GCAACTCCTCGTCGTCGT 59.745 61.111 1.33 0.00 38.33 4.34
712 728 2.504244 GGCAACTCCTCGTCGTCG 60.504 66.667 0.00 0.00 38.55 5.12
713 729 2.126031 GGGCAACTCCTCGTCGTC 60.126 66.667 0.00 0.00 34.39 4.20
714 730 4.052229 CGGGCAACTCCTCGTCGT 62.052 66.667 0.00 0.00 34.39 4.34
744 760 2.182030 CGGAGAGAAGGACGCACC 59.818 66.667 0.00 0.00 39.35 5.01
745 761 1.153997 GACGGAGAGAAGGACGCAC 60.154 63.158 0.00 0.00 0.00 5.34
749 765 0.528470 CCAGTGACGGAGAGAAGGAC 59.472 60.000 0.00 0.00 0.00 3.85
992 1011 0.611896 AGAAGATTTGGGTTGGCCGG 60.612 55.000 0.00 0.00 34.97 6.13
1018 1047 4.137872 TTACGGGCCCTCGAAGCG 62.138 66.667 22.43 7.03 0.00 4.68
1038 1067 0.533755 GAATCTGGTGCGGGATCTGG 60.534 60.000 0.00 0.00 0.00 3.86
1040 1069 1.443407 CGAATCTGGTGCGGGATCT 59.557 57.895 0.00 0.00 0.00 2.75
1169 1198 2.104132 CCATCGATCGTGGTCGCA 59.896 61.111 21.40 1.34 41.22 5.10
1198 1227 0.905337 GATCCCGATCCCGATCCCTT 60.905 60.000 5.67 0.00 38.22 3.95
1199 1228 1.305381 GATCCCGATCCCGATCCCT 60.305 63.158 5.67 0.00 38.22 4.20
1204 1233 3.862744 CTCCCGATCCCGATCCCGA 62.863 68.421 0.00 0.00 38.22 5.14
1205 1234 3.374402 CTCCCGATCCCGATCCCG 61.374 72.222 0.00 0.00 38.22 5.14
1206 1235 2.997897 CCTCCCGATCCCGATCCC 60.998 72.222 0.00 0.00 38.22 3.85
1207 1236 3.696676 GCCTCCCGATCCCGATCC 61.697 72.222 0.00 0.00 38.22 3.36
1208 1237 4.057428 CGCCTCCCGATCCCGATC 62.057 72.222 0.00 0.00 40.02 3.69
1209 1238 4.598319 TCGCCTCCCGATCCCGAT 62.598 66.667 0.00 0.00 41.89 4.18
1335 1364 2.435938 GCGAGGACGATGGGCAAA 60.436 61.111 0.00 0.00 42.66 3.68
1336 1365 4.467084 GGCGAGGACGATGGGCAA 62.467 66.667 0.00 0.00 42.66 4.52
1374 1403 1.333636 CGCAGGGAGTTGGATCCTCT 61.334 60.000 14.23 11.34 39.50 3.69
1584 1613 1.407025 GGGCTTGGCTTGTACTAGACC 60.407 57.143 7.75 8.85 31.90 3.85
1586 1615 0.909623 GGGGCTTGGCTTGTACTAGA 59.090 55.000 8.60 0.00 0.00 2.43
1759 1791 1.754745 TGGACCACCAGCTCAGAAC 59.245 57.895 0.00 0.00 41.77 3.01
1760 1792 4.311700 TGGACCACCAGCTCAGAA 57.688 55.556 0.00 0.00 41.77 3.02
1783 1818 6.070938 GGCAACTTAAGAGGTAACCTTAGAGA 60.071 42.308 10.09 0.00 31.76 3.10
1788 1823 4.104261 ACTGGCAACTTAAGAGGTAACCTT 59.896 41.667 10.09 0.00 32.08 3.50
1791 1826 7.683437 ATTTACTGGCAACTTAAGAGGTAAC 57.317 36.000 10.09 0.00 37.61 2.50
1855 1890 6.149973 CCAAAAGATCGCCATACATCATACAT 59.850 38.462 0.00 0.00 0.00 2.29
1856 1891 5.469760 CCAAAAGATCGCCATACATCATACA 59.530 40.000 0.00 0.00 0.00 2.29
1857 1892 5.470098 ACCAAAAGATCGCCATACATCATAC 59.530 40.000 0.00 0.00 0.00 2.39
1858 1893 5.620206 ACCAAAAGATCGCCATACATCATA 58.380 37.500 0.00 0.00 0.00 2.15
1859 1894 4.464008 ACCAAAAGATCGCCATACATCAT 58.536 39.130 0.00 0.00 0.00 2.45
1860 1895 3.884895 ACCAAAAGATCGCCATACATCA 58.115 40.909 0.00 0.00 0.00 3.07
1861 1896 4.900635 AACCAAAAGATCGCCATACATC 57.099 40.909 0.00 0.00 0.00 3.06
1868 1903 4.965119 ATCAACTAACCAAAAGATCGCC 57.035 40.909 0.00 0.00 0.00 5.54
1875 1910 7.881142 ACATCAATCGAATCAACTAACCAAAA 58.119 30.769 0.00 0.00 0.00 2.44
1891 1926 6.576313 GCTTTGTGCAGATAATACATCAATCG 59.424 38.462 0.00 0.00 42.31 3.34
1897 1932 9.730705 ATACATAGCTTTGTGCAGATAATACAT 57.269 29.630 18.71 0.00 45.94 2.29
1919 1976 8.821147 ATAGAAGTTTGTGTCGTTGTAATACA 57.179 30.769 0.00 0.00 0.00 2.29
1923 1980 6.924612 TGCTATAGAAGTTTGTGTCGTTGTAA 59.075 34.615 3.21 0.00 0.00 2.41
1929 1986 6.408858 ACATTGCTATAGAAGTTTGTGTCG 57.591 37.500 3.21 0.00 0.00 4.35
1937 1994 3.386726 TGCCCGTACATTGCTATAGAAGT 59.613 43.478 3.21 0.00 0.00 3.01
1939 1996 4.617253 ATGCCCGTACATTGCTATAGAA 57.383 40.909 3.21 0.00 0.00 2.10
1952 2113 4.041075 TGCTATGGAGATTAAATGCCCGTA 59.959 41.667 0.00 0.00 0.00 4.02
1973 2134 1.672881 AGCAGAATATTCAGGCGTTGC 59.327 47.619 17.56 15.65 35.68 4.17
2024 2185 6.534475 ACCAATTATTGTGATGTGCAGAAT 57.466 33.333 4.15 0.00 42.48 2.40
2027 2188 6.138088 CGATACCAATTATTGTGATGTGCAG 58.862 40.000 4.15 0.00 0.00 4.41
2028 2189 5.505489 GCGATACCAATTATTGTGATGTGCA 60.505 40.000 4.15 0.00 0.00 4.57
2029 2190 4.911610 GCGATACCAATTATTGTGATGTGC 59.088 41.667 4.15 0.00 0.00 4.57
2030 2191 6.304356 AGCGATACCAATTATTGTGATGTG 57.696 37.500 4.15 0.00 0.00 3.21
2032 2193 8.087982 AGTAAGCGATACCAATTATTGTGATG 57.912 34.615 4.15 0.00 34.89 3.07
2033 2194 9.204570 GTAGTAAGCGATACCAATTATTGTGAT 57.795 33.333 4.15 0.00 34.89 3.06
2034 2195 8.418662 AGTAGTAAGCGATACCAATTATTGTGA 58.581 33.333 4.15 0.00 34.89 3.58
2035 2196 8.589335 AGTAGTAAGCGATACCAATTATTGTG 57.411 34.615 4.15 0.00 34.89 3.33
2036 2197 9.609346 AAAGTAGTAAGCGATACCAATTATTGT 57.391 29.630 4.15 0.00 34.89 2.71
2039 2200 8.426489 TCCAAAGTAGTAAGCGATACCAATTAT 58.574 33.333 0.00 0.00 34.89 1.28
2040 2201 7.784037 TCCAAAGTAGTAAGCGATACCAATTA 58.216 34.615 0.00 0.00 34.89 1.40
2041 2202 6.646267 TCCAAAGTAGTAAGCGATACCAATT 58.354 36.000 0.00 0.00 34.89 2.32
2042 2203 6.229936 TCCAAAGTAGTAAGCGATACCAAT 57.770 37.500 0.00 0.00 34.89 3.16
2043 2204 5.664294 TCCAAAGTAGTAAGCGATACCAA 57.336 39.130 0.00 0.00 34.89 3.67
2048 2209 9.862371 CAGATATATTCCAAAGTAGTAAGCGAT 57.138 33.333 0.00 0.00 0.00 4.58
2049 2210 7.813148 GCAGATATATTCCAAAGTAGTAAGCGA 59.187 37.037 0.00 0.00 0.00 4.93
2050 2211 7.598869 TGCAGATATATTCCAAAGTAGTAAGCG 59.401 37.037 0.00 0.00 0.00 4.68
2051 2212 8.833231 TGCAGATATATTCCAAAGTAGTAAGC 57.167 34.615 0.00 0.00 0.00 3.09
2063 2236 9.664332 AGTTGTAAGATGATGCAGATATATTCC 57.336 33.333 0.00 0.00 0.00 3.01
2090 2263 5.358442 GTCTACTCAGAGATGTGGAAGCTAA 59.642 44.000 3.79 0.00 0.00 3.09
2105 2278 6.426328 ACTTGCTTTGATTTCAGTCTACTCAG 59.574 38.462 0.00 0.00 0.00 3.35
2106 2279 6.291377 ACTTGCTTTGATTTCAGTCTACTCA 58.709 36.000 0.00 0.00 0.00 3.41
2109 2282 7.659652 ACTACTTGCTTTGATTTCAGTCTAC 57.340 36.000 0.00 0.00 0.00 2.59
2113 2286 5.049405 CGGAACTACTTGCTTTGATTTCAGT 60.049 40.000 0.00 0.00 0.00 3.41
2126 2299 6.696148 GTGGACTATTCATACGGAACTACTTG 59.304 42.308 0.00 0.00 38.60 3.16
2131 2304 3.387050 GGGTGGACTATTCATACGGAACT 59.613 47.826 0.00 0.00 38.60 3.01
2187 2360 5.666474 TTTACCCCAACTAAAGGAAGGAA 57.334 39.130 0.00 0.00 0.00 3.36
2199 2372 1.201414 CCGTCTGCAATTTACCCCAAC 59.799 52.381 0.00 0.00 0.00 3.77
2205 2378 4.680171 AAGTTAGCCGTCTGCAATTTAC 57.320 40.909 0.00 0.00 44.83 2.01
2223 2403 8.415950 TCCATTGTTTGTATTCCAACATAAGT 57.584 30.769 0.00 0.00 31.20 2.24
2232 2412 7.547227 AGTATTGCTTCCATTGTTTGTATTCC 58.453 34.615 0.00 0.00 0.00 3.01
2273 2453 5.772825 TGCAATGCTAAAAGGATGGATAC 57.227 39.130 6.82 0.00 0.00 2.24
2274 2454 6.788598 TTTGCAATGCTAAAAGGATGGATA 57.211 33.333 6.82 0.00 0.00 2.59
2288 2468 2.602878 CTGACTCCACATTTGCAATGC 58.397 47.619 0.00 0.00 0.00 3.56
2389 2569 9.705290 TTGATATTTAGCAGTAAGATATCGCAA 57.295 29.630 0.00 0.00 34.15 4.85
2468 2651 6.655003 TGAATCTCATACTTTCCTGTGAAACC 59.345 38.462 0.00 0.00 35.58 3.27
2485 2668 5.299279 TCGCACATACACTCTATGAATCTCA 59.701 40.000 0.00 0.00 0.00 3.27
2538 2721 2.485814 GCATCCTTCAGGTCAGTTGAAC 59.514 50.000 0.00 0.00 36.34 3.18
2663 2846 3.005155 GCCTCTTGTTCATGCTTTTCACT 59.995 43.478 0.00 0.00 0.00 3.41
2707 2890 3.459232 TCAACCCAGCTATCTTCATCG 57.541 47.619 0.00 0.00 0.00 3.84
2778 2961 5.178996 CAGATTCCTATCGCATTCCTTTCTG 59.821 44.000 0.00 0.00 35.85 3.02
2905 3088 4.263905 TGAGCCTGGAATGGACAAAGTAAT 60.264 41.667 0.00 0.00 0.00 1.89
2944 3127 3.270027 TGGGTTTGCATCAGTTATCTCG 58.730 45.455 0.00 0.00 0.00 4.04
3206 3389 0.179059 TTCAACACGCAGCCTTCAGA 60.179 50.000 0.00 0.00 0.00 3.27
3219 3402 4.641541 CACATGGGATGCTATCTTTCAACA 59.358 41.667 0.00 0.00 0.00 3.33
3285 3468 4.427312 CACTCCAGCTGGATTAAATTTGC 58.573 43.478 35.11 0.00 44.46 3.68
3294 3477 1.906253 CTCTGCACTCCAGCTGGAT 59.094 57.895 35.11 21.70 44.46 3.41
3295 3478 2.952293 GCTCTGCACTCCAGCTGGA 61.952 63.158 33.04 33.04 41.50 3.86
3376 3559 5.143369 GGAAGAGGCTTGGGATCATTTAAT 58.857 41.667 0.00 0.00 0.00 1.40
3426 3609 1.069022 CCTTCGCCAATGTCACTTGTG 60.069 52.381 0.00 0.00 0.00 3.33
3714 3897 7.217070 GCTGCGAGTTAATTGTATCAGAAAAAG 59.783 37.037 0.00 0.00 0.00 2.27
3788 3971 2.914097 GCCTGGCTGCCTGTTGTT 60.914 61.111 21.03 0.00 0.00 2.83
3789 3972 3.441712 AAGCCTGGCTGCCTGTTGT 62.442 57.895 24.16 0.00 39.62 3.32
3790 3973 2.599578 AAGCCTGGCTGCCTGTTG 60.600 61.111 24.16 8.72 39.62 3.33
3948 4131 3.379372 CCCACCATTAAGCTTCTCACATG 59.621 47.826 0.00 0.00 0.00 3.21
3962 4145 2.637382 CAAAAGGTAAAGGCCCACCATT 59.363 45.455 18.34 11.34 39.06 3.16
4056 4239 3.861840 TCTGCTTGTTTATCTTCCTCCG 58.138 45.455 0.00 0.00 0.00 4.63
4086 4269 6.429692 AGAATTTGTACGACCATCATCAACAA 59.570 34.615 0.00 0.00 0.00 2.83
4201 4384 4.243793 TCCTTTGGTGGAAGTGAGAAAA 57.756 40.909 0.00 0.00 32.39 2.29
4383 4566 6.018425 CACATCAACCTCCTGAAAAGATATCG 60.018 42.308 0.00 0.00 0.00 2.92
4407 4590 3.776969 AGATACAGAAATGAGTGGAGCCA 59.223 43.478 0.00 0.00 0.00 4.75
4496 4679 3.480470 ACAGTTCAGTGCTAGCAAATGT 58.520 40.909 21.29 16.38 0.00 2.71
4662 4845 1.746615 CTGCCATCAACAGACCCGG 60.747 63.158 0.00 0.00 37.32 5.73
4713 4896 1.069090 TGAGCCGTCTCACCAACAC 59.931 57.895 0.00 0.00 43.95 3.32
4726 4909 1.471684 CTGCTTTCATCCACTTGAGCC 59.528 52.381 0.00 0.00 0.00 4.70
4951 5134 1.069823 CCATCTCCCTCATCAACCTCG 59.930 57.143 0.00 0.00 0.00 4.63
5148 5331 4.338879 CTCATCTGACAGGGTTTCCATTT 58.661 43.478 1.81 0.00 34.83 2.32
5196 5379 2.487265 CCACCAGAAAGCCTAGTGTTGT 60.487 50.000 0.00 0.00 33.47 3.32
5199 5382 0.693049 CCCACCAGAAAGCCTAGTGT 59.307 55.000 0.00 0.00 33.47 3.55
5202 5385 1.133976 CCATCCCACCAGAAAGCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
5401 5584 2.481441 ACATCAGGACCAGCTCCATTA 58.519 47.619 0.00 0.00 42.46 1.90
5474 5657 2.251893 GCTTGTACTCGTTCTCTTCGG 58.748 52.381 0.00 0.00 0.00 4.30
5542 5725 3.152341 CTCCTCCACAGCAGAAATTTGT 58.848 45.455 0.00 0.00 0.00 2.83
5617 5800 4.497674 GCAAAGGCATCATCATCTGAAGAC 60.498 45.833 0.00 0.00 40.72 3.01
5709 5892 2.890945 ACCACATCAAGTAAGGGTTTGC 59.109 45.455 0.00 0.00 0.00 3.68
5719 5902 4.356405 TGTCAGATCAACCACATCAAGT 57.644 40.909 0.00 0.00 0.00 3.16
5775 5958 0.251787 AACCACATCAGGGAAAGGCC 60.252 55.000 0.00 0.00 0.00 5.19
5783 5966 1.340308 TGGCAGATCAACCACATCAGG 60.340 52.381 2.74 0.00 0.00 3.86
5948 6131 8.101654 AGGATACGAGTCTTATCTGTGATAAC 57.898 38.462 14.36 0.00 46.39 1.89
5955 6138 4.759693 AGCTGAGGATACGAGTCTTATCTG 59.240 45.833 14.36 6.10 46.39 2.90
6003 6186 3.282885 TCACTTTTGTACATGCCACACA 58.717 40.909 0.00 0.00 0.00 3.72
6031 6214 0.243636 CATGGCCGTGGAAGAAAACC 59.756 55.000 17.90 0.00 0.00 3.27
6071 6256 4.062991 GCTACATTTATACTGTTCGGGGG 58.937 47.826 0.00 0.00 0.00 5.40
6100 6285 0.249031 ACGGCAGAAAAGCAAAGTGC 60.249 50.000 0.00 0.00 45.46 4.40
6206 6392 7.809806 GCTTGTATCAAGTTTACTCTTTGCATT 59.190 33.333 10.49 0.00 0.00 3.56
6207 6393 7.040478 TGCTTGTATCAAGTTTACTCTTTGCAT 60.040 33.333 10.49 0.00 0.00 3.96
6224 6410 6.105333 AGAACATCTTCAGAGTGCTTGTATC 58.895 40.000 0.00 0.00 0.00 2.24
6290 6766 8.965986 AAAAGAGAAAACTACTGTCAAACAAC 57.034 30.769 0.00 0.00 0.00 3.32
6353 6829 7.616150 TCGGAGAAATGGATAAAATGGGTTTTA 59.384 33.333 0.00 0.00 42.28 1.52
6354 6830 6.439058 TCGGAGAAATGGATAAAATGGGTTTT 59.561 34.615 0.00 0.00 40.48 2.43
6355 6831 5.955355 TCGGAGAAATGGATAAAATGGGTTT 59.045 36.000 0.00 0.00 0.00 3.27
6356 6832 5.359860 GTCGGAGAAATGGATAAAATGGGTT 59.640 40.000 0.00 0.00 39.69 4.11
6357 6833 4.887655 GTCGGAGAAATGGATAAAATGGGT 59.112 41.667 0.00 0.00 39.69 4.51
6358 6834 4.887071 TGTCGGAGAAATGGATAAAATGGG 59.113 41.667 0.00 0.00 39.69 4.00
6359 6835 6.095440 ACTTGTCGGAGAAATGGATAAAATGG 59.905 38.462 0.00 0.00 39.69 3.16
6360 6836 7.088589 ACTTGTCGGAGAAATGGATAAAATG 57.911 36.000 0.00 0.00 39.69 2.32
6361 6837 8.980481 ATACTTGTCGGAGAAATGGATAAAAT 57.020 30.769 0.00 0.00 39.69 1.82
6362 6838 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
6363 6839 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
6376 6852 5.393027 CCCTCCATTTGAAAATACTTGTCGG 60.393 44.000 0.00 0.00 0.00 4.79
6380 6856 6.840780 ACTCCCTCCATTTGAAAATACTTG 57.159 37.500 0.00 0.00 0.00 3.16
6467 6944 5.016173 TGCCTGGCATATAAGAGTGTTTTT 58.984 37.500 19.30 0.00 31.71 1.94
6473 6950 4.510167 AAACTGCCTGGCATATAAGAGT 57.490 40.909 23.64 11.80 38.13 3.24
6476 6953 4.210331 AGGAAAACTGCCTGGCATATAAG 58.790 43.478 23.64 12.65 38.13 1.73
6482 6959 0.250901 GAGAGGAAAACTGCCTGGCA 60.251 55.000 21.96 21.96 35.44 4.92
6490 6967 1.275573 GCCAGGTACGAGAGGAAAACT 59.724 52.381 0.00 0.00 0.00 2.66
6590 7070 4.567597 ACCCCCTCACCACCGACA 62.568 66.667 0.00 0.00 0.00 4.35
6696 7180 7.200455 TCTGAAGAATATTTATTCAGCGTCGA 58.800 34.615 25.28 14.09 46.11 4.20
6882 7367 3.006728 TACCTCCCAAGCCCCACG 61.007 66.667 0.00 0.00 0.00 4.94
6883 7368 1.911702 GACTACCTCCCAAGCCCCAC 61.912 65.000 0.00 0.00 0.00 4.61
6884 7369 1.615424 GACTACCTCCCAAGCCCCA 60.615 63.158 0.00 0.00 0.00 4.96
6885 7370 2.376165 GGACTACCTCCCAAGCCCC 61.376 68.421 0.00 0.00 31.83 5.80
6886 7371 1.615424 TGGACTACCTCCCAAGCCC 60.615 63.158 0.00 0.00 38.49 5.19
6887 7372 1.627297 CCTGGACTACCTCCCAAGCC 61.627 65.000 0.00 0.00 38.49 4.35
6935 7432 1.067846 CGTTCCGTCTTCCAGATGTCA 60.068 52.381 0.00 0.00 29.27 3.58
6962 7464 1.604604 CATCCACGAACCACAAACCT 58.395 50.000 0.00 0.00 0.00 3.50
6967 7469 1.302431 CTGCCATCCACGAACCACA 60.302 57.895 0.00 0.00 0.00 4.17
7002 7504 1.287815 CACCACGACTAAGACGCCA 59.712 57.895 0.00 0.00 0.00 5.69
7052 7554 3.562232 GACCGGGACAACACCCCA 61.562 66.667 6.32 0.00 46.62 4.96
7189 7694 3.129502 CACCACAGCAGCCATCGG 61.130 66.667 0.00 0.00 0.00 4.18
7190 7695 3.129502 CCACCACAGCAGCCATCG 61.130 66.667 0.00 0.00 0.00 3.84
7191 7696 2.034687 ACCACCACAGCAGCCATC 59.965 61.111 0.00 0.00 0.00 3.51
7192 7697 2.282674 CACCACCACAGCAGCCAT 60.283 61.111 0.00 0.00 0.00 4.40
7196 7701 3.289834 GCACCACCACCACAGCAG 61.290 66.667 0.00 0.00 0.00 4.24
7197 7702 4.892965 GGCACCACCACCACAGCA 62.893 66.667 0.00 0.00 38.86 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.