Multiple sequence alignment - TraesCS2B01G225900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G225900 chr2B 100.000 4852 0 0 1 4852 216707391 216712242 0.000000e+00 8961.0
1 TraesCS2B01G225900 chr2B 87.931 580 68 2 1112 1690 563046400 563045822 0.000000e+00 682.0
2 TraesCS2B01G225900 chr2B 91.983 237 17 1 1999 2233 16847166 16847402 1.010000e-86 331.0
3 TraesCS2B01G225900 chr2B 82.031 128 22 1 1 128 571811674 571811548 1.850000e-19 108.0
4 TraesCS2B01G225900 chr2D 92.754 1794 72 24 2235 4001 159575079 159576841 0.000000e+00 2540.0
5 TraesCS2B01G225900 chr2D 91.947 1279 50 17 592 1831 159573327 159574591 0.000000e+00 1742.0
6 TraesCS2B01G225900 chr2D 86.565 856 56 22 3999 4825 159577956 159578781 0.000000e+00 889.0
7 TraesCS2B01G225900 chr2D 88.428 579 67 0 1112 1690 480181630 480181052 0.000000e+00 699.0
8 TraesCS2B01G225900 chr2D 87.478 575 72 0 1116 1690 480325488 480324914 0.000000e+00 664.0
9 TraesCS2B01G225900 chr2D 88.435 147 17 0 3126 3272 480180550 480180404 1.390000e-40 178.0
10 TraesCS2B01G225900 chr2D 88.000 150 15 3 1854 2000 159574927 159575076 1.800000e-39 174.0
11 TraesCS2B01G225900 chr2A 90.258 2012 95 46 2241 4163 170603873 170605872 0.000000e+00 2536.0
12 TraesCS2B01G225900 chr2A 90.876 1907 96 26 143 2000 170601988 170603865 0.000000e+00 2486.0
13 TraesCS2B01G225900 chr2A 87.759 580 69 2 1112 1690 622748013 622747435 0.000000e+00 676.0
14 TraesCS2B01G225900 chr2A 87.352 593 71 3 1100 1690 622853713 622853123 0.000000e+00 676.0
15 TraesCS2B01G225900 chr2A 85.600 125 18 0 4393 4517 170608099 170608223 1.100000e-26 132.0
16 TraesCS2B01G225900 chr5D 84.912 570 79 7 1121 1688 128565428 128564864 1.960000e-158 569.0
17 TraesCS2B01G225900 chr5D 92.017 238 15 3 1999 2233 489769846 489770082 1.010000e-86 331.0
18 TraesCS2B01G225900 chr5D 91.667 132 11 0 3129 3260 426640141 426640272 2.980000e-42 183.0
19 TraesCS2B01G225900 chr5D 80.392 102 17 2 13 113 477309804 477309903 1.870000e-09 75.0
20 TraesCS2B01G225900 chr5A 84.588 571 81 5 1121 1689 143552900 143552335 1.180000e-155 560.0
21 TraesCS2B01G225900 chr5A 91.667 132 11 0 3129 3260 540682307 540682438 2.980000e-42 183.0
22 TraesCS2B01G225900 chr5A 84.091 132 20 1 1 132 570162640 570162510 5.100000e-25 126.0
23 TraesCS2B01G225900 chr4D 93.220 236 14 1 1999 2232 331068122 331067887 3.590000e-91 346.0
24 TraesCS2B01G225900 chr4D 91.736 242 16 3 1999 2238 64665315 64665076 2.800000e-87 333.0
25 TraesCS2B01G225900 chr4A 92.827 237 14 2 1998 2232 99024491 99024256 1.670000e-89 340.0
26 TraesCS2B01G225900 chr7B 92.405 237 16 1 1999 2233 513064691 513064927 2.160000e-88 337.0
27 TraesCS2B01G225900 chr7B 81.452 124 22 1 4404 4527 517397725 517397847 3.090000e-17 100.0
28 TraesCS2B01G225900 chr7A 92.766 235 12 4 1999 2232 704795114 704794884 7.780000e-88 335.0
29 TraesCS2B01G225900 chr7A 92.373 236 14 3 2000 2232 467422537 467422771 2.800000e-87 333.0
30 TraesCS2B01G225900 chr3B 91.322 242 19 1 1999 2238 580829334 580829575 3.620000e-86 329.0
31 TraesCS2B01G225900 chr6A 91.216 148 13 0 3126 3273 414876527 414876380 8.230000e-48 202.0
32 TraesCS2B01G225900 chr6A 96.970 33 1 0 4465 4497 100727769 100727737 6.780000e-04 56.5
33 TraesCS2B01G225900 chr6D 90.541 148 14 0 3126 3273 302039303 302039450 3.830000e-46 196.0
34 TraesCS2B01G225900 chr6B 89.865 148 15 0 3126 3273 467449756 467449903 1.780000e-44 191.0
35 TraesCS2B01G225900 chr6B 85.271 129 19 0 1 129 662861872 662862000 3.050000e-27 134.0
36 TraesCS2B01G225900 chr6B 84.496 129 20 0 1 129 162625167 162625039 1.420000e-25 128.0
37 TraesCS2B01G225900 chr5B 90.909 132 12 0 3129 3260 516538534 516538665 1.390000e-40 178.0
38 TraesCS2B01G225900 chr5B 78.431 102 19 2 13 113 584881469 584881568 4.050000e-06 63.9
39 TraesCS2B01G225900 chr1B 86.232 138 19 0 1 138 590014900 590014763 3.030000e-32 150.0
40 TraesCS2B01G225900 chr3A 84.677 124 19 0 1 124 498789647 498789770 1.830000e-24 124.0
41 TraesCS2B01G225900 chr4B 80.741 135 19 3 1 134 614126671 614126799 1.110000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G225900 chr2B 216707391 216712242 4851 False 8961.00 8961 100.000000 1 4852 1 chr2B.!!$F2 4851
1 TraesCS2B01G225900 chr2B 563045822 563046400 578 True 682.00 682 87.931000 1112 1690 1 chr2B.!!$R1 578
2 TraesCS2B01G225900 chr2D 159573327 159578781 5454 False 1336.25 2540 89.816500 592 4825 4 chr2D.!!$F1 4233
3 TraesCS2B01G225900 chr2D 480324914 480325488 574 True 664.00 664 87.478000 1116 1690 1 chr2D.!!$R1 574
4 TraesCS2B01G225900 chr2D 480180404 480181630 1226 True 438.50 699 88.431500 1112 3272 2 chr2D.!!$R2 2160
5 TraesCS2B01G225900 chr2A 170601988 170608223 6235 False 1718.00 2536 88.911333 143 4517 3 chr2A.!!$F1 4374
6 TraesCS2B01G225900 chr2A 622747435 622748013 578 True 676.00 676 87.759000 1112 1690 1 chr2A.!!$R1 578
7 TraesCS2B01G225900 chr2A 622853123 622853713 590 True 676.00 676 87.352000 1100 1690 1 chr2A.!!$R2 590
8 TraesCS2B01G225900 chr5D 128564864 128565428 564 True 569.00 569 84.912000 1121 1688 1 chr5D.!!$R1 567
9 TraesCS2B01G225900 chr5A 143552335 143552900 565 True 560.00 560 84.588000 1121 1689 1 chr5A.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.037447 AAGCCTGGAGAAAGGTGCTC 59.963 55.0 0.00 0.00 39.75 4.26 F
133 134 0.176680 CGTAGAGCCTCTGTGCCATT 59.823 55.0 3.98 0.00 0.00 3.16 F
1049 1080 0.320771 GCGAGAAGGAACAGCAAGGA 60.321 55.0 0.00 0.00 0.00 3.36 F
2012 2560 0.606604 TGCTTTACTCCCTCCGTCAC 59.393 55.0 0.00 0.00 0.00 3.67 F
2208 2756 0.107654 AAGAATTTCCTAGCGCGCCT 60.108 50.0 30.33 17.79 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2554 1.798813 GTGCCTTCTAAACTGTGACGG 59.201 52.381 0.00 0.0 0.00 4.79 R
2021 2569 2.360801 ACACGCAAATTTAACTGTGCCT 59.639 40.909 2.62 0.0 33.33 4.75 R
2189 2737 0.107654 AGGCGCGCTAGGAAATTCTT 60.108 50.000 32.29 0.0 0.00 2.52 R
3534 4140 0.250858 CTCTGGATGGGCACAACACA 60.251 55.000 0.00 0.0 0.00 3.72 R
3944 4573 0.307760 AGAAAACAAGAGTTGGCGCG 59.692 50.000 0.00 0.0 38.17 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.969043 AGGAATATGACAACTTGGTATTCCA 58.031 36.000 25.58 0.00 46.78 3.53
25 26 6.828785 AGGAATATGACAACTTGGTATTCCAC 59.171 38.462 25.58 12.89 46.78 4.02
26 27 6.601613 GGAATATGACAACTTGGTATTCCACA 59.398 38.462 22.52 0.00 45.08 4.17
27 28 7.122055 GGAATATGACAACTTGGTATTCCACAA 59.878 37.037 22.52 0.00 45.08 3.33
28 29 8.415950 AATATGACAACTTGGTATTCCACAAA 57.584 30.769 0.00 0.00 44.22 2.83
29 30 5.766150 TGACAACTTGGTATTCCACAAAG 57.234 39.130 0.00 0.00 44.22 2.77
30 31 4.582656 TGACAACTTGGTATTCCACAAAGG 59.417 41.667 0.00 0.00 41.88 3.11
31 32 4.542697 ACAACTTGGTATTCCACAAAGGT 58.457 39.130 0.00 0.00 38.79 3.50
32 33 4.870363 CAACTTGGTATTCCACAAAGGTG 58.130 43.478 0.00 0.00 46.91 4.00
33 34 4.178956 ACTTGGTATTCCACAAAGGTGT 57.821 40.909 0.00 0.00 41.88 4.16
34 35 5.735922 CAACTTGGTATTCCACAAAGGTGTG 60.736 44.000 2.04 0.00 46.86 3.82
45 46 4.307032 ACAAAGGTGTGGATGCTATCTT 57.693 40.909 0.00 0.00 36.31 2.40
46 47 4.265073 ACAAAGGTGTGGATGCTATCTTC 58.735 43.478 0.00 0.00 36.31 2.87
47 48 4.263462 ACAAAGGTGTGGATGCTATCTTCA 60.263 41.667 0.00 0.00 36.31 3.02
48 49 4.785346 AAGGTGTGGATGCTATCTTCAT 57.215 40.909 0.00 0.00 0.00 2.57
49 50 4.082665 AGGTGTGGATGCTATCTTCATG 57.917 45.455 0.00 0.00 0.00 3.07
50 51 2.551459 GGTGTGGATGCTATCTTCATGC 59.449 50.000 0.00 0.00 33.61 4.06
51 52 3.208594 GTGTGGATGCTATCTTCATGCA 58.791 45.455 0.00 0.00 39.42 3.96
52 53 3.250280 GTGTGGATGCTATCTTCATGCAG 59.750 47.826 0.00 0.00 41.71 4.41
53 54 2.225963 GTGGATGCTATCTTCATGCAGC 59.774 50.000 0.00 0.00 41.71 5.25
55 56 1.811359 GATGCTATCTTCATGCAGCCC 59.189 52.381 0.00 0.00 40.18 5.19
56 57 0.179009 TGCTATCTTCATGCAGCCCC 60.179 55.000 0.00 0.00 32.97 5.80
57 58 0.110104 GCTATCTTCATGCAGCCCCT 59.890 55.000 0.00 0.00 0.00 4.79
58 59 1.478288 GCTATCTTCATGCAGCCCCTT 60.478 52.381 0.00 0.00 0.00 3.95
59 60 2.228059 CTATCTTCATGCAGCCCCTTG 58.772 52.381 0.00 0.00 0.00 3.61
60 61 1.041447 ATCTTCATGCAGCCCCTTGC 61.041 55.000 0.00 0.00 44.33 4.01
69 70 3.930504 GCCCCTTGCTCCTGAATG 58.069 61.111 0.00 0.00 36.87 2.67
70 71 1.000396 GCCCCTTGCTCCTGAATGT 60.000 57.895 0.00 0.00 36.87 2.71
71 72 0.613012 GCCCCTTGCTCCTGAATGTT 60.613 55.000 0.00 0.00 36.87 2.71
72 73 1.928868 CCCCTTGCTCCTGAATGTTT 58.071 50.000 0.00 0.00 0.00 2.83
73 74 1.547372 CCCCTTGCTCCTGAATGTTTG 59.453 52.381 0.00 0.00 0.00 2.93
74 75 1.067354 CCCTTGCTCCTGAATGTTTGC 60.067 52.381 0.00 0.00 0.00 3.68
75 76 1.614903 CCTTGCTCCTGAATGTTTGCA 59.385 47.619 0.00 0.00 0.00 4.08
76 77 2.608752 CCTTGCTCCTGAATGTTTGCAC 60.609 50.000 0.00 0.00 0.00 4.57
77 78 1.689984 TGCTCCTGAATGTTTGCACA 58.310 45.000 0.00 0.00 37.31 4.57
78 79 2.030371 TGCTCCTGAATGTTTGCACAA 58.970 42.857 0.00 0.00 36.16 3.33
79 80 2.034939 TGCTCCTGAATGTTTGCACAAG 59.965 45.455 0.00 0.00 36.16 3.16
80 81 2.669364 CTCCTGAATGTTTGCACAAGC 58.331 47.619 0.00 0.00 36.16 4.01
81 82 1.340889 TCCTGAATGTTTGCACAAGCC 59.659 47.619 0.00 0.00 41.13 4.35
82 83 1.342174 CCTGAATGTTTGCACAAGCCT 59.658 47.619 0.00 0.00 41.13 4.58
83 84 2.400399 CTGAATGTTTGCACAAGCCTG 58.600 47.619 0.00 0.00 41.13 4.85
84 85 1.068895 TGAATGTTTGCACAAGCCTGG 59.931 47.619 0.00 0.00 41.13 4.45
85 86 1.340889 GAATGTTTGCACAAGCCTGGA 59.659 47.619 0.00 0.00 41.13 3.86
86 87 0.963962 ATGTTTGCACAAGCCTGGAG 59.036 50.000 0.00 0.00 41.13 3.86
87 88 0.106769 TGTTTGCACAAGCCTGGAGA 60.107 50.000 0.00 0.00 41.13 3.71
88 89 1.032014 GTTTGCACAAGCCTGGAGAA 58.968 50.000 0.00 0.00 41.13 2.87
89 90 1.408702 GTTTGCACAAGCCTGGAGAAA 59.591 47.619 0.00 0.00 41.13 2.52
90 91 1.321474 TTGCACAAGCCTGGAGAAAG 58.679 50.000 0.00 0.00 41.13 2.62
91 92 0.538057 TGCACAAGCCTGGAGAAAGG 60.538 55.000 0.00 0.00 41.13 3.11
92 93 0.538287 GCACAAGCCTGGAGAAAGGT 60.538 55.000 0.00 0.00 39.75 3.50
93 94 1.242076 CACAAGCCTGGAGAAAGGTG 58.758 55.000 0.00 0.00 39.75 4.00
94 95 0.538287 ACAAGCCTGGAGAAAGGTGC 60.538 55.000 0.00 0.00 39.75 5.01
95 96 0.251077 CAAGCCTGGAGAAAGGTGCT 60.251 55.000 0.00 0.00 39.75 4.40
96 97 0.037447 AAGCCTGGAGAAAGGTGCTC 59.963 55.000 0.00 0.00 39.75 4.26
97 98 0.839853 AGCCTGGAGAAAGGTGCTCT 60.840 55.000 0.00 0.00 39.75 4.09
98 99 0.037447 GCCTGGAGAAAGGTGCTCTT 59.963 55.000 0.00 0.00 39.75 2.85
100 101 2.868899 CCTGGAGAAAGGTGCTCTTTT 58.131 47.619 6.98 1.72 45.00 2.27
101 102 2.816672 CCTGGAGAAAGGTGCTCTTTTC 59.183 50.000 13.67 13.67 45.00 2.29
102 103 3.480470 CTGGAGAAAGGTGCTCTTTTCA 58.520 45.455 20.91 12.10 45.00 2.69
103 104 4.077822 CTGGAGAAAGGTGCTCTTTTCAT 58.922 43.478 20.91 9.50 45.00 2.57
104 105 4.473444 TGGAGAAAGGTGCTCTTTTCATT 58.527 39.130 20.91 5.71 45.00 2.57
105 106 4.895297 TGGAGAAAGGTGCTCTTTTCATTT 59.105 37.500 20.91 5.10 45.00 2.32
106 107 5.221303 TGGAGAAAGGTGCTCTTTTCATTTG 60.221 40.000 20.91 0.00 45.00 2.32
107 108 5.010012 GGAGAAAGGTGCTCTTTTCATTTGA 59.990 40.000 20.91 0.00 45.00 2.69
108 109 6.461509 GGAGAAAGGTGCTCTTTTCATTTGAA 60.462 38.462 20.91 0.00 45.00 2.69
109 110 6.510536 AGAAAGGTGCTCTTTTCATTTGAAG 58.489 36.000 20.91 0.00 45.00 3.02
110 111 4.248691 AGGTGCTCTTTTCATTTGAAGC 57.751 40.909 0.00 0.00 35.21 3.86
111 112 3.638160 AGGTGCTCTTTTCATTTGAAGCA 59.362 39.130 1.52 1.52 35.21 3.91
112 113 4.282703 AGGTGCTCTTTTCATTTGAAGCAT 59.717 37.500 7.66 0.00 35.16 3.79
113 114 4.624452 GGTGCTCTTTTCATTTGAAGCATC 59.376 41.667 7.66 4.29 35.16 3.91
114 115 4.624452 GTGCTCTTTTCATTTGAAGCATCC 59.376 41.667 7.66 0.00 35.16 3.51
115 116 3.855950 GCTCTTTTCATTTGAAGCATCCG 59.144 43.478 0.00 0.00 35.21 4.18
116 117 4.616835 GCTCTTTTCATTTGAAGCATCCGT 60.617 41.667 0.00 0.00 35.21 4.69
117 118 5.391950 GCTCTTTTCATTTGAAGCATCCGTA 60.392 40.000 0.00 0.00 35.21 4.02
118 119 6.182039 TCTTTTCATTTGAAGCATCCGTAG 57.818 37.500 0.00 0.00 35.21 3.51
119 120 5.937540 TCTTTTCATTTGAAGCATCCGTAGA 59.062 36.000 0.00 0.00 35.21 2.59
120 121 5.801350 TTTCATTTGAAGCATCCGTAGAG 57.199 39.130 0.00 0.00 35.21 2.43
121 122 3.198068 TCATTTGAAGCATCCGTAGAGC 58.802 45.455 0.00 0.00 0.00 4.09
122 123 2.024176 TTTGAAGCATCCGTAGAGCC 57.976 50.000 0.00 0.00 0.00 4.70
123 124 1.195115 TTGAAGCATCCGTAGAGCCT 58.805 50.000 0.00 0.00 0.00 4.58
124 125 0.747255 TGAAGCATCCGTAGAGCCTC 59.253 55.000 0.00 0.00 0.00 4.70
125 126 1.036707 GAAGCATCCGTAGAGCCTCT 58.963 55.000 0.00 0.00 0.00 3.69
126 127 0.749649 AAGCATCCGTAGAGCCTCTG 59.250 55.000 3.98 0.00 0.00 3.35
127 128 0.396417 AGCATCCGTAGAGCCTCTGT 60.396 55.000 3.98 0.00 0.00 3.41
128 129 0.249238 GCATCCGTAGAGCCTCTGTG 60.249 60.000 3.98 0.00 0.00 3.66
129 130 0.249238 CATCCGTAGAGCCTCTGTGC 60.249 60.000 3.98 0.00 0.00 4.57
130 131 1.395826 ATCCGTAGAGCCTCTGTGCC 61.396 60.000 3.98 0.00 0.00 5.01
131 132 2.351244 CCGTAGAGCCTCTGTGCCA 61.351 63.158 3.98 0.00 0.00 4.92
132 133 1.680522 CCGTAGAGCCTCTGTGCCAT 61.681 60.000 3.98 0.00 0.00 4.40
133 134 0.176680 CGTAGAGCCTCTGTGCCATT 59.823 55.000 3.98 0.00 0.00 3.16
134 135 1.406069 CGTAGAGCCTCTGTGCCATTT 60.406 52.381 3.98 0.00 0.00 2.32
135 136 2.284190 GTAGAGCCTCTGTGCCATTTC 58.716 52.381 3.98 0.00 0.00 2.17
136 137 0.694771 AGAGCCTCTGTGCCATTTCA 59.305 50.000 0.00 0.00 0.00 2.69
137 138 0.807496 GAGCCTCTGTGCCATTTCAC 59.193 55.000 0.00 0.00 37.48 3.18
138 139 0.957395 AGCCTCTGTGCCATTTCACG 60.957 55.000 0.00 0.00 39.73 4.35
139 140 1.503542 CCTCTGTGCCATTTCACGC 59.496 57.895 0.00 0.00 39.73 5.34
140 141 1.503542 CTCTGTGCCATTTCACGCC 59.496 57.895 0.00 0.00 39.73 5.68
141 142 1.228094 TCTGTGCCATTTCACGCCA 60.228 52.632 0.00 0.00 39.73 5.69
169 170 0.535335 CCGTCGATTTCCTTCTCCCA 59.465 55.000 0.00 0.00 0.00 4.37
170 171 1.641577 CGTCGATTTCCTTCTCCCAC 58.358 55.000 0.00 0.00 0.00 4.61
176 177 3.742640 CGATTTCCTTCTCCCACCATCTC 60.743 52.174 0.00 0.00 0.00 2.75
182 183 2.285368 TCCCACCATCTCCGCCTT 60.285 61.111 0.00 0.00 0.00 4.35
186 187 1.133792 CCCACCATCTCCGCCTTTATT 60.134 52.381 0.00 0.00 0.00 1.40
191 192 2.222027 CATCTCCGCCTTTATTCCCAC 58.778 52.381 0.00 0.00 0.00 4.61
193 194 0.465642 CTCCGCCTTTATTCCCACCC 60.466 60.000 0.00 0.00 0.00 4.61
199 200 0.322997 CTTTATTCCCACCCGCACCA 60.323 55.000 0.00 0.00 0.00 4.17
253 255 0.459237 CAGCCTGACTCGCTCGAAAT 60.459 55.000 0.00 0.00 33.17 2.17
254 256 0.459237 AGCCTGACTCGCTCGAAATG 60.459 55.000 0.00 0.00 0.00 2.32
258 260 2.509336 ACTCGCTCGAAATGGCCG 60.509 61.111 0.00 0.00 0.00 6.13
262 264 1.151777 TCGCTCGAAATGGCCGATTC 61.152 55.000 9.67 9.67 35.35 2.52
294 296 2.350514 AGCCAGGCTCTGAACTGC 59.649 61.111 8.70 0.00 30.62 4.40
314 316 2.735134 GCTTTAAGGTTCGTGTCGATGT 59.265 45.455 0.00 0.00 35.23 3.06
387 389 0.698238 TGGTTGGGCTCTATGCAGTT 59.302 50.000 0.00 0.00 45.15 3.16
390 392 2.683362 GGTTGGGCTCTATGCAGTTAAC 59.317 50.000 0.00 0.00 45.15 2.01
411 413 9.216117 GTTAACCAAACACATCATTAGACTAGT 57.784 33.333 0.00 0.00 38.05 2.57
415 417 9.787435 ACCAAACACATCATTAGACTAGTTTAA 57.213 29.630 8.20 8.20 0.00 1.52
425 427 9.924650 TCATTAGACTAGTTTAACTTCTGAACC 57.075 33.333 7.95 0.00 0.00 3.62
438 440 7.654022 AACTTCTGAACCCTTTTGTTTATGA 57.346 32.000 0.00 0.00 0.00 2.15
440 442 5.682943 TCTGAACCCTTTTGTTTATGACG 57.317 39.130 0.00 0.00 0.00 4.35
449 451 6.920758 CCCTTTTGTTTATGACGAAAATGTGA 59.079 34.615 0.00 0.00 40.30 3.58
450 452 7.598493 CCCTTTTGTTTATGACGAAAATGTGAT 59.402 33.333 0.00 0.00 40.30 3.06
457 459 9.767684 GTTTATGACGAAAATGTGATGAATGTA 57.232 29.630 0.00 0.00 0.00 2.29
459 461 5.868257 TGACGAAAATGTGATGAATGTAGC 58.132 37.500 0.00 0.00 0.00 3.58
461 463 4.096382 ACGAAAATGTGATGAATGTAGCCC 59.904 41.667 0.00 0.00 0.00 5.19
463 465 2.260844 ATGTGATGAATGTAGCCCGG 57.739 50.000 0.00 0.00 0.00 5.73
472 474 4.590918 TGAATGTAGCCCGGTTTAAATGA 58.409 39.130 0.00 0.00 0.00 2.57
503 505 8.731275 TCTAGTTTGTGTGAAAAATCTTCTGA 57.269 30.769 0.00 0.00 0.00 3.27
507 509 5.811399 TGTGTGAAAAATCTTCTGACGTT 57.189 34.783 0.00 0.00 0.00 3.99
524 526 2.292292 ACGTTTGAAATATATGCGGCCC 59.708 45.455 0.00 0.00 0.00 5.80
525 527 2.664424 CGTTTGAAATATATGCGGCCCG 60.664 50.000 0.00 0.00 0.00 6.13
528 530 2.577700 TGAAATATATGCGGCCCGTTT 58.422 42.857 4.45 0.00 0.00 3.60
529 531 2.292016 TGAAATATATGCGGCCCGTTTG 59.708 45.455 4.45 0.00 0.00 2.93
530 532 2.264005 AATATATGCGGCCCGTTTGA 57.736 45.000 4.45 0.00 0.00 2.69
531 533 1.808411 ATATATGCGGCCCGTTTGAG 58.192 50.000 4.45 0.00 0.00 3.02
532 534 0.882927 TATATGCGGCCCGTTTGAGC 60.883 55.000 4.45 0.00 0.00 4.26
553 555 0.756294 ACACGGTTGGATGTCTGACA 59.244 50.000 13.60 13.60 0.00 3.58
578 580 2.294979 ACTGTTCGTTTTTGGGGAGAC 58.705 47.619 0.00 0.00 0.00 3.36
683 685 5.090139 AGAGATATCCGTGAATCCTGGAAT 58.910 41.667 0.00 0.00 34.97 3.01
684 686 5.046735 AGAGATATCCGTGAATCCTGGAATG 60.047 44.000 0.00 0.00 34.97 2.67
790 806 6.985059 GCAAATTAAATACTCCTCCTACTCGT 59.015 38.462 0.00 0.00 0.00 4.18
798 814 7.742556 ATACTCCTCCTACTCGTACAAATAC 57.257 40.000 0.00 0.00 0.00 1.89
801 817 6.435277 ACTCCTCCTACTCGTACAAATACAAA 59.565 38.462 0.00 0.00 0.00 2.83
803 819 8.523915 TCCTCCTACTCGTACAAATACAAATA 57.476 34.615 0.00 0.00 0.00 1.40
804 820 8.627403 TCCTCCTACTCGTACAAATACAAATAG 58.373 37.037 0.00 0.00 0.00 1.73
805 821 8.627403 CCTCCTACTCGTACAAATACAAATAGA 58.373 37.037 0.00 0.00 0.00 1.98
831 856 8.934507 ATTCAGAAGAAGAAAATACTACTCCG 57.065 34.615 0.00 0.00 37.14 4.63
832 857 7.463961 TCAGAAGAAGAAAATACTACTCCGT 57.536 36.000 0.00 0.00 0.00 4.69
833 858 7.536855 TCAGAAGAAGAAAATACTACTCCGTC 58.463 38.462 0.00 0.00 0.00 4.79
834 859 7.176165 TCAGAAGAAGAAAATACTACTCCGTCA 59.824 37.037 0.00 0.00 0.00 4.35
849 874 2.891580 TCCGTCACTAGCTCAGTTTTCT 59.108 45.455 0.00 0.00 34.26 2.52
854 879 5.050490 GTCACTAGCTCAGTTTTCTGTTCA 58.950 41.667 0.00 0.00 46.98 3.18
928 953 2.769893 TGTTGTCTTTTACCTACCGCC 58.230 47.619 0.00 0.00 0.00 6.13
962 987 4.658901 TCCATAAATACCACCTTCCTCTCC 59.341 45.833 0.00 0.00 0.00 3.71
963 988 4.660771 CCATAAATACCACCTTCCTCTCCT 59.339 45.833 0.00 0.00 0.00 3.69
964 989 5.221742 CCATAAATACCACCTTCCTCTCCTC 60.222 48.000 0.00 0.00 0.00 3.71
965 990 3.786213 AATACCACCTTCCTCTCCTCT 57.214 47.619 0.00 0.00 0.00 3.69
993 1018 4.329545 CTCCCCCACCACACACCG 62.330 72.222 0.00 0.00 0.00 4.94
996 1021 4.885270 CCCCACCACACACCGCAA 62.885 66.667 0.00 0.00 0.00 4.85
997 1022 3.286751 CCCACCACACACCGCAAG 61.287 66.667 0.00 0.00 0.00 4.01
1049 1080 0.320771 GCGAGAAGGAACAGCAAGGA 60.321 55.000 0.00 0.00 0.00 3.36
1051 1082 2.072298 CGAGAAGGAACAGCAAGGAAG 58.928 52.381 0.00 0.00 0.00 3.46
1693 1724 2.807895 CACGTCCCGGTAAGCACG 60.808 66.667 0.00 3.09 38.24 5.34
1726 1775 9.019764 CGCAGAATTCTTTTGAAAAAGTAAAGA 57.980 29.630 4.86 0.00 44.37 2.52
1808 2038 4.743651 GCCATGAGGATAGATCGTCCAAAA 60.744 45.833 18.59 7.21 40.08 2.44
1941 2485 8.107196 AGGATGAACAAAAAGGAGGATAGTAT 57.893 34.615 0.00 0.00 0.00 2.12
1942 2486 7.995488 AGGATGAACAAAAAGGAGGATAGTATG 59.005 37.037 0.00 0.00 0.00 2.39
1956 2501 8.478877 GGAGGATAGTATGTATGAATGTTAGGG 58.521 40.741 0.00 0.00 0.00 3.53
1958 2503 9.261035 AGGATAGTATGTATGAATGTTAGGGAG 57.739 37.037 0.00 0.00 0.00 4.30
2000 2548 6.677781 TTAAGTACTGCCATGATGCTTTAC 57.322 37.500 0.00 0.00 0.00 2.01
2001 2549 4.494091 AGTACTGCCATGATGCTTTACT 57.506 40.909 0.00 0.00 0.00 2.24
2002 2550 4.446371 AGTACTGCCATGATGCTTTACTC 58.554 43.478 0.00 0.00 29.19 2.59
2003 2551 2.648059 ACTGCCATGATGCTTTACTCC 58.352 47.619 0.00 0.00 0.00 3.85
2004 2552 1.952296 CTGCCATGATGCTTTACTCCC 59.048 52.381 0.00 0.00 0.00 4.30
2006 2554 2.225467 GCCATGATGCTTTACTCCCTC 58.775 52.381 0.00 0.00 0.00 4.30
2007 2555 2.856222 CCATGATGCTTTACTCCCTCC 58.144 52.381 0.00 0.00 0.00 4.30
2008 2556 2.487934 CATGATGCTTTACTCCCTCCG 58.512 52.381 0.00 0.00 0.00 4.63
2009 2557 1.568504 TGATGCTTTACTCCCTCCGT 58.431 50.000 0.00 0.00 0.00 4.69
2010 2558 1.480954 TGATGCTTTACTCCCTCCGTC 59.519 52.381 0.00 0.00 0.00 4.79
2011 2559 1.480954 GATGCTTTACTCCCTCCGTCA 59.519 52.381 0.00 0.00 0.00 4.35
2012 2560 0.606604 TGCTTTACTCCCTCCGTCAC 59.393 55.000 0.00 0.00 0.00 3.67
2013 2561 0.606604 GCTTTACTCCCTCCGTCACA 59.393 55.000 0.00 0.00 0.00 3.58
2014 2562 1.404315 GCTTTACTCCCTCCGTCACAG 60.404 57.143 0.00 0.00 0.00 3.66
2015 2563 1.893801 CTTTACTCCCTCCGTCACAGT 59.106 52.381 0.00 0.00 0.00 3.55
2016 2564 2.005370 TTACTCCCTCCGTCACAGTT 57.995 50.000 0.00 0.00 0.00 3.16
2017 2565 2.005370 TACTCCCTCCGTCACAGTTT 57.995 50.000 0.00 0.00 0.00 2.66
2018 2566 2.005370 ACTCCCTCCGTCACAGTTTA 57.995 50.000 0.00 0.00 0.00 2.01
2019 2567 1.893801 ACTCCCTCCGTCACAGTTTAG 59.106 52.381 0.00 0.00 0.00 1.85
2020 2568 2.168496 CTCCCTCCGTCACAGTTTAGA 58.832 52.381 0.00 0.00 0.00 2.10
2021 2569 2.561419 CTCCCTCCGTCACAGTTTAGAA 59.439 50.000 0.00 0.00 0.00 2.10
2022 2570 2.561419 TCCCTCCGTCACAGTTTAGAAG 59.439 50.000 0.00 0.00 0.00 2.85
2023 2571 2.353803 CCCTCCGTCACAGTTTAGAAGG 60.354 54.545 0.00 0.00 35.14 3.46
2024 2572 2.338500 CTCCGTCACAGTTTAGAAGGC 58.662 52.381 0.00 0.00 34.05 4.35
2025 2573 1.689813 TCCGTCACAGTTTAGAAGGCA 59.310 47.619 0.00 0.00 34.05 4.75
2026 2574 1.798813 CCGTCACAGTTTAGAAGGCAC 59.201 52.381 0.00 0.00 0.00 5.01
2027 2575 2.479837 CGTCACAGTTTAGAAGGCACA 58.520 47.619 0.00 0.00 0.00 4.57
2028 2576 2.476619 CGTCACAGTTTAGAAGGCACAG 59.523 50.000 0.00 0.00 0.00 3.66
2029 2577 3.467803 GTCACAGTTTAGAAGGCACAGT 58.532 45.455 0.00 0.00 0.00 3.55
2030 2578 3.877508 GTCACAGTTTAGAAGGCACAGTT 59.122 43.478 0.00 0.00 0.00 3.16
2031 2579 5.054477 GTCACAGTTTAGAAGGCACAGTTA 58.946 41.667 0.00 0.00 0.00 2.24
2032 2580 5.526111 GTCACAGTTTAGAAGGCACAGTTAA 59.474 40.000 0.00 0.00 0.00 2.01
2033 2581 6.037830 GTCACAGTTTAGAAGGCACAGTTAAA 59.962 38.462 0.00 0.00 0.00 1.52
2034 2582 6.770785 TCACAGTTTAGAAGGCACAGTTAAAT 59.229 34.615 0.00 0.00 0.00 1.40
2035 2583 7.284489 TCACAGTTTAGAAGGCACAGTTAAATT 59.716 33.333 0.00 0.00 0.00 1.82
2036 2584 7.920682 CACAGTTTAGAAGGCACAGTTAAATTT 59.079 33.333 0.00 0.00 0.00 1.82
2037 2585 7.920682 ACAGTTTAGAAGGCACAGTTAAATTTG 59.079 33.333 0.00 0.00 0.00 2.32
2038 2586 6.923508 AGTTTAGAAGGCACAGTTAAATTTGC 59.076 34.615 5.51 5.51 0.00 3.68
2039 2587 3.900941 AGAAGGCACAGTTAAATTTGCG 58.099 40.909 7.84 0.00 35.74 4.85
2040 2588 3.317993 AGAAGGCACAGTTAAATTTGCGT 59.682 39.130 7.84 5.77 35.74 5.24
2041 2589 3.011949 AGGCACAGTTAAATTTGCGTG 57.988 42.857 8.27 4.14 35.74 5.34
2042 2590 2.360801 AGGCACAGTTAAATTTGCGTGT 59.639 40.909 8.27 0.00 35.74 4.49
2043 2591 2.470999 GGCACAGTTAAATTTGCGTGTG 59.529 45.455 17.66 17.66 38.64 3.82
2044 2592 3.112580 GCACAGTTAAATTTGCGTGTGT 58.887 40.909 20.59 8.28 38.04 3.72
2045 2593 3.179599 GCACAGTTAAATTTGCGTGTGTC 59.820 43.478 20.59 13.61 38.04 3.67
2046 2594 3.728718 CACAGTTAAATTTGCGTGTGTCC 59.271 43.478 15.33 0.00 32.44 4.02
2047 2595 3.378742 ACAGTTAAATTTGCGTGTGTCCA 59.621 39.130 0.00 0.00 0.00 4.02
2048 2596 3.728718 CAGTTAAATTTGCGTGTGTCCAC 59.271 43.478 0.00 0.00 38.27 4.02
2049 2597 3.378742 AGTTAAATTTGCGTGTGTCCACA 59.621 39.130 0.00 0.00 41.93 4.17
2050 2598 2.949451 AAATTTGCGTGTGTCCACAA 57.051 40.000 0.93 0.00 43.77 3.33
2051 2599 3.451141 AAATTTGCGTGTGTCCACAAT 57.549 38.095 0.93 0.00 43.77 2.71
2052 2600 4.576216 AAATTTGCGTGTGTCCACAATA 57.424 36.364 0.93 0.00 43.77 1.90
2053 2601 3.829886 ATTTGCGTGTGTCCACAATAG 57.170 42.857 0.93 0.00 43.77 1.73
2054 2602 2.535012 TTGCGTGTGTCCACAATAGA 57.465 45.000 0.93 0.00 43.77 1.98
2055 2603 1.790755 TGCGTGTGTCCACAATAGAC 58.209 50.000 0.93 0.00 43.77 2.59
2056 2604 1.069358 TGCGTGTGTCCACAATAGACA 59.931 47.619 0.93 0.00 43.77 3.41
2057 2605 2.139917 GCGTGTGTCCACAATAGACAA 58.860 47.619 0.93 0.00 45.37 3.18
2058 2606 2.157668 GCGTGTGTCCACAATAGACAAG 59.842 50.000 0.93 0.00 45.37 3.16
2059 2607 2.736721 CGTGTGTCCACAATAGACAAGG 59.263 50.000 0.93 0.00 45.37 3.61
2060 2608 3.740115 GTGTGTCCACAATAGACAAGGT 58.260 45.455 0.93 0.00 45.37 3.50
2061 2609 4.134563 GTGTGTCCACAATAGACAAGGTT 58.865 43.478 0.93 0.00 45.37 3.50
2062 2610 4.578928 GTGTGTCCACAATAGACAAGGTTT 59.421 41.667 0.93 0.00 45.37 3.27
2063 2611 5.761234 GTGTGTCCACAATAGACAAGGTTTA 59.239 40.000 0.93 0.00 45.37 2.01
2064 2612 6.261381 GTGTGTCCACAATAGACAAGGTTTAA 59.739 38.462 0.93 0.00 45.37 1.52
2065 2613 6.485313 TGTGTCCACAATAGACAAGGTTTAAG 59.515 38.462 0.00 0.00 45.37 1.85
2066 2614 6.708949 GTGTCCACAATAGACAAGGTTTAAGA 59.291 38.462 0.00 0.00 45.37 2.10
2067 2615 6.708949 TGTCCACAATAGACAAGGTTTAAGAC 59.291 38.462 0.00 0.00 41.17 3.01
2068 2616 5.929992 TCCACAATAGACAAGGTTTAAGACG 59.070 40.000 0.00 0.00 0.00 4.18
2069 2617 5.390567 CCACAATAGACAAGGTTTAAGACGC 60.391 44.000 0.00 0.00 0.00 5.19
2070 2618 5.178623 CACAATAGACAAGGTTTAAGACGCA 59.821 40.000 0.00 0.00 0.00 5.24
2071 2619 5.938125 ACAATAGACAAGGTTTAAGACGCAT 59.062 36.000 0.00 0.00 0.00 4.73
2072 2620 6.430000 ACAATAGACAAGGTTTAAGACGCATT 59.570 34.615 0.00 0.00 0.00 3.56
2073 2621 4.749245 AGACAAGGTTTAAGACGCATTG 57.251 40.909 0.00 0.00 0.00 2.82
2074 2622 3.058224 AGACAAGGTTTAAGACGCATTGC 60.058 43.478 0.00 0.00 0.00 3.56
2075 2623 2.621055 ACAAGGTTTAAGACGCATTGCA 59.379 40.909 9.69 0.00 0.00 4.08
2076 2624 3.255642 ACAAGGTTTAAGACGCATTGCAT 59.744 39.130 9.69 0.00 0.00 3.96
2077 2625 4.236935 CAAGGTTTAAGACGCATTGCATT 58.763 39.130 9.69 2.95 0.00 3.56
2078 2626 4.519540 AGGTTTAAGACGCATTGCATTT 57.480 36.364 9.69 2.31 0.00 2.32
2079 2627 5.637006 AGGTTTAAGACGCATTGCATTTA 57.363 34.783 9.69 1.37 0.00 1.40
2080 2628 6.207691 AGGTTTAAGACGCATTGCATTTAT 57.792 33.333 9.69 0.00 0.00 1.40
2081 2629 6.630071 AGGTTTAAGACGCATTGCATTTATT 58.370 32.000 9.69 0.00 0.00 1.40
2082 2630 7.096551 AGGTTTAAGACGCATTGCATTTATTT 58.903 30.769 9.69 0.00 0.00 1.40
2083 2631 7.275560 AGGTTTAAGACGCATTGCATTTATTTC 59.724 33.333 9.69 0.00 0.00 2.17
2084 2632 7.275560 GGTTTAAGACGCATTGCATTTATTTCT 59.724 33.333 9.69 0.00 0.00 2.52
2085 2633 9.284594 GTTTAAGACGCATTGCATTTATTTCTA 57.715 29.630 9.69 0.00 0.00 2.10
2086 2634 9.502145 TTTAAGACGCATTGCATTTATTTCTAG 57.498 29.630 9.69 0.00 0.00 2.43
2087 2635 6.683974 AGACGCATTGCATTTATTTCTAGT 57.316 33.333 9.69 0.00 0.00 2.57
2088 2636 7.786178 AGACGCATTGCATTTATTTCTAGTA 57.214 32.000 9.69 0.00 0.00 1.82
2089 2637 7.855545 AGACGCATTGCATTTATTTCTAGTAG 58.144 34.615 9.69 0.00 0.00 2.57
2090 2638 6.430451 ACGCATTGCATTTATTTCTAGTAGC 58.570 36.000 9.69 0.00 0.00 3.58
2091 2639 6.260936 ACGCATTGCATTTATTTCTAGTAGCT 59.739 34.615 9.69 0.00 0.00 3.32
2092 2640 7.441157 ACGCATTGCATTTATTTCTAGTAGCTA 59.559 33.333 9.69 0.00 0.00 3.32
2093 2641 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
2141 2689 8.707938 TCTATATACATGTGCAGTATGAATGC 57.292 34.615 9.11 0.00 44.11 3.56
2142 2690 8.534496 TCTATATACATGTGCAGTATGAATGCT 58.466 33.333 9.11 0.00 44.17 3.79
2143 2691 9.807649 CTATATACATGTGCAGTATGAATGCTA 57.192 33.333 9.11 0.81 44.17 3.49
2145 2693 7.991084 ATACATGTGCAGTATGAATGCTATT 57.009 32.000 9.11 0.00 44.17 1.73
2146 2694 6.704289 ACATGTGCAGTATGAATGCTATTT 57.296 33.333 15.67 0.00 44.17 1.40
2147 2695 7.104043 ACATGTGCAGTATGAATGCTATTTT 57.896 32.000 15.67 0.00 44.17 1.82
2148 2696 7.549839 ACATGTGCAGTATGAATGCTATTTTT 58.450 30.769 15.67 0.00 44.17 1.94
2168 2716 6.739331 TTTTTAACCCATCTCACAACCAAT 57.261 33.333 0.00 0.00 0.00 3.16
2169 2717 7.841282 TTTTTAACCCATCTCACAACCAATA 57.159 32.000 0.00 0.00 0.00 1.90
2170 2718 7.461182 TTTTAACCCATCTCACAACCAATAG 57.539 36.000 0.00 0.00 0.00 1.73
2171 2719 4.927267 AACCCATCTCACAACCAATAGA 57.073 40.909 0.00 0.00 0.00 1.98
2172 2720 5.456921 AACCCATCTCACAACCAATAGAT 57.543 39.130 0.00 0.00 0.00 1.98
2173 2721 6.575244 AACCCATCTCACAACCAATAGATA 57.425 37.500 0.00 0.00 0.00 1.98
2174 2722 6.575244 ACCCATCTCACAACCAATAGATAA 57.425 37.500 0.00 0.00 0.00 1.75
2175 2723 6.357367 ACCCATCTCACAACCAATAGATAAC 58.643 40.000 0.00 0.00 0.00 1.89
2176 2724 5.765182 CCCATCTCACAACCAATAGATAACC 59.235 44.000 0.00 0.00 0.00 2.85
2177 2725 6.356556 CCATCTCACAACCAATAGATAACCA 58.643 40.000 0.00 0.00 0.00 3.67
2178 2726 6.260936 CCATCTCACAACCAATAGATAACCAC 59.739 42.308 0.00 0.00 0.00 4.16
2179 2727 6.367374 TCTCACAACCAATAGATAACCACA 57.633 37.500 0.00 0.00 0.00 4.17
2180 2728 6.957631 TCTCACAACCAATAGATAACCACAT 58.042 36.000 0.00 0.00 0.00 3.21
2181 2729 8.084985 TCTCACAACCAATAGATAACCACATA 57.915 34.615 0.00 0.00 0.00 2.29
2182 2730 8.204160 TCTCACAACCAATAGATAACCACATAG 58.796 37.037 0.00 0.00 0.00 2.23
2183 2731 7.279615 TCACAACCAATAGATAACCACATAGG 58.720 38.462 0.00 0.00 45.67 2.57
2207 2755 0.733150 AAAGAATTTCCTAGCGCGCC 59.267 50.000 30.33 10.31 27.08 6.53
2208 2756 0.107654 AAGAATTTCCTAGCGCGCCT 60.108 50.000 30.33 17.79 0.00 5.52
2209 2757 0.107654 AGAATTTCCTAGCGCGCCTT 60.108 50.000 30.33 13.66 0.00 4.35
2210 2758 0.305009 GAATTTCCTAGCGCGCCTTC 59.695 55.000 30.33 14.83 0.00 3.46
2211 2759 0.107654 AATTTCCTAGCGCGCCTTCT 60.108 50.000 30.33 12.34 0.00 2.85
2212 2760 0.750850 ATTTCCTAGCGCGCCTTCTA 59.249 50.000 30.33 12.91 0.00 2.10
2213 2761 0.533491 TTTCCTAGCGCGCCTTCTAA 59.467 50.000 30.33 14.41 0.00 2.10
2214 2762 0.533491 TTCCTAGCGCGCCTTCTAAA 59.467 50.000 30.33 12.27 0.00 1.85
2215 2763 0.179119 TCCTAGCGCGCCTTCTAAAC 60.179 55.000 30.33 0.00 0.00 2.01
2216 2764 1.152383 CCTAGCGCGCCTTCTAAACC 61.152 60.000 30.33 0.00 0.00 3.27
2217 2765 1.480219 CTAGCGCGCCTTCTAAACCG 61.480 60.000 30.33 0.00 0.00 4.44
2218 2766 2.216750 TAGCGCGCCTTCTAAACCGT 62.217 55.000 30.33 6.92 0.00 4.83
2219 2767 2.776072 CGCGCCTTCTAAACCGTG 59.224 61.111 0.00 0.00 0.00 4.94
2220 2768 1.735198 CGCGCCTTCTAAACCGTGA 60.735 57.895 0.00 0.00 33.47 4.35
2221 2769 1.785951 GCGCCTTCTAAACCGTGAC 59.214 57.895 0.00 0.00 0.00 3.67
2222 2770 1.952266 GCGCCTTCTAAACCGTGACG 61.952 60.000 0.00 0.00 0.00 4.35
2233 2781 3.510846 CGTGACGGAGGGAGTAGG 58.489 66.667 0.00 0.00 0.00 3.18
2234 2782 1.077930 CGTGACGGAGGGAGTAGGA 60.078 63.158 0.00 0.00 0.00 2.94
2235 2783 0.679002 CGTGACGGAGGGAGTAGGAA 60.679 60.000 0.00 0.00 0.00 3.36
2236 2784 1.553706 GTGACGGAGGGAGTAGGAAA 58.446 55.000 0.00 0.00 0.00 3.13
2237 2785 1.897802 GTGACGGAGGGAGTAGGAAAA 59.102 52.381 0.00 0.00 0.00 2.29
2238 2786 2.500504 GTGACGGAGGGAGTAGGAAAAT 59.499 50.000 0.00 0.00 0.00 1.82
2239 2787 2.500098 TGACGGAGGGAGTAGGAAAATG 59.500 50.000 0.00 0.00 0.00 2.32
2245 2793 5.106277 CGGAGGGAGTAGGAAAATGTTTTTC 60.106 44.000 4.51 4.51 0.00 2.29
2249 2797 5.773176 GGGAGTAGGAAAATGTTTTTCTCCA 59.227 40.000 20.30 2.21 37.23 3.86
2296 2844 2.093341 AGGCGTAAATGTGGGTCGTAAT 60.093 45.455 0.00 0.00 0.00 1.89
2302 2850 5.806502 CGTAAATGTGGGTCGTAATAGTTGA 59.193 40.000 0.00 0.00 0.00 3.18
2309 2857 3.592059 GGTCGTAATAGTTGAACTGGCA 58.408 45.455 8.33 0.00 0.00 4.92
2322 2870 1.443194 CTGGCACTGCAATTGACGC 60.443 57.895 10.34 5.00 0.00 5.19
2323 2871 2.132517 CTGGCACTGCAATTGACGCA 62.133 55.000 10.34 0.00 37.88 5.24
2351 2899 5.608449 TGAAGAATCCAGATGCATCTAGTG 58.392 41.667 28.27 18.87 34.85 2.74
2452 3003 3.221389 CATCCATGGCCTTGGCCG 61.221 66.667 28.88 19.12 36.66 6.13
2603 3174 4.536489 AGTACAAATTACCTCTCCTTGGCT 59.464 41.667 0.00 0.00 0.00 4.75
2671 3261 3.345414 AGTTACTACTCTGTCCGGTGAG 58.655 50.000 16.17 16.17 36.47 3.51
2844 3438 2.586079 CTGAGGCCGGCGTATGTG 60.586 66.667 23.69 8.59 0.00 3.21
2973 3567 2.665603 GGTGTCCTCCAGCACTCC 59.334 66.667 0.00 0.00 41.31 3.85
3275 3873 1.414158 CTGGGATGATCAGGTACCGT 58.586 55.000 6.18 0.00 0.00 4.83
3282 3880 5.254901 GGATGATCAGGTACCGTACTATCT 58.745 45.833 6.18 0.00 0.00 1.98
3283 3881 6.413052 GGATGATCAGGTACCGTACTATCTA 58.587 44.000 6.18 0.00 0.00 1.98
3284 3882 6.539464 GGATGATCAGGTACCGTACTATCTAG 59.461 46.154 6.18 0.00 0.00 2.43
3285 3883 6.430962 TGATCAGGTACCGTACTATCTAGT 57.569 41.667 6.18 0.00 40.24 2.57
3286 3884 6.228995 TGATCAGGTACCGTACTATCTAGTG 58.771 44.000 6.18 0.00 37.10 2.74
3336 3942 6.875195 CCATTCCATTTTCATGTTAAGTTGCT 59.125 34.615 0.00 0.00 0.00 3.91
3355 3961 4.847198 TGCTTTGATCTCATCTTGGCTTA 58.153 39.130 0.00 0.00 0.00 3.09
3365 3971 6.158598 TCTCATCTTGGCTTAATTTGTTTGC 58.841 36.000 0.00 0.00 0.00 3.68
3499 4105 3.615496 ACGCGTAACAAGTTATCATCCAC 59.385 43.478 11.67 0.00 0.00 4.02
3504 4110 5.004440 CGTAACAAGTTATCATCCACGTCAG 59.996 44.000 0.00 0.00 0.00 3.51
3507 4113 3.444703 AGTTATCATCCACGTCAGCTC 57.555 47.619 0.00 0.00 0.00 4.09
3543 4149 1.795170 AATGGCGACCTGTGTTGTGC 61.795 55.000 0.00 0.00 0.00 4.57
3592 4202 2.945668 ACTTCTCAACAGTTCAGTTGGC 59.054 45.455 6.95 0.00 46.74 4.52
3612 4225 1.470890 CCCGCAATGGTCGTGTTATTT 59.529 47.619 0.00 0.00 35.15 1.40
3626 4239 3.126171 GTGTTATTTATGTGTCGGCAGCA 59.874 43.478 0.00 0.00 0.00 4.41
3805 4426 3.686726 GCCACCTTTCTGTCTAAGTCATG 59.313 47.826 0.00 0.00 0.00 3.07
3840 4462 5.585390 CAAGTGATCATCCCAAATAAGTGC 58.415 41.667 0.00 0.00 0.00 4.40
3844 4466 6.100279 AGTGATCATCCCAAATAAGTGCTCTA 59.900 38.462 0.00 0.00 0.00 2.43
3911 4540 1.136147 GCTGCTTTGCCGATGTGAG 59.864 57.895 0.00 0.00 0.00 3.51
3944 4573 4.148871 CCGAATGATCATATGTCGTGTGAC 59.851 45.833 20.95 0.00 45.71 3.67
4003 4632 1.600013 CTCTACGGTCTCATCCACTCG 59.400 57.143 0.00 0.00 0.00 4.18
4004 4633 1.208776 TCTACGGTCTCATCCACTCGA 59.791 52.381 0.00 0.00 0.00 4.04
4010 5756 1.064946 CTCATCCACTCGACGGAGC 59.935 63.158 5.16 0.00 44.48 4.70
4025 5771 1.202132 CGGAGCTGTCTCTTTCTCTCG 60.202 57.143 0.00 0.00 39.31 4.04
4049 5799 6.316390 CGCTTTTGTTCCTTGATTCCTATAGT 59.684 38.462 0.00 0.00 0.00 2.12
4117 5867 3.439476 CAGCAGGATTCTTGTCTTTGGAG 59.561 47.826 0.00 0.00 0.00 3.86
4118 5868 3.328931 AGCAGGATTCTTGTCTTTGGAGA 59.671 43.478 0.00 0.00 0.00 3.71
4148 5903 4.088648 GCATGTCTTTTTCATTACGACCG 58.911 43.478 0.00 0.00 0.00 4.79
4152 5907 5.291178 TGTCTTTTTCATTACGACCGAAGA 58.709 37.500 0.00 0.00 0.00 2.87
4156 5911 3.880047 TTCATTACGACCGAAGACCAT 57.120 42.857 0.00 0.00 0.00 3.55
4163 5918 2.298163 ACGACCGAAGACCATACAAACT 59.702 45.455 0.00 0.00 0.00 2.66
4169 5924 4.152402 CCGAAGACCATACAAACTCTTGTG 59.848 45.833 0.81 0.00 45.53 3.33
4171 5926 5.236478 CGAAGACCATACAAACTCTTGTGTT 59.764 40.000 0.81 0.00 45.53 3.32
4172 5927 6.377327 AAGACCATACAAACTCTTGTGTTG 57.623 37.500 0.81 0.00 45.53 3.33
4182 7851 2.445525 ACTCTTGTGTTGTAATGGGGGT 59.554 45.455 0.00 0.00 0.00 4.95
4274 7945 2.561858 GTCGAAAGGGGTTCTGTAGAGT 59.438 50.000 0.00 0.00 33.70 3.24
4275 7946 2.824341 TCGAAAGGGGTTCTGTAGAGTC 59.176 50.000 0.00 0.00 33.70 3.36
4276 7947 2.094130 CGAAAGGGGTTCTGTAGAGTCC 60.094 54.545 0.00 0.00 33.70 3.85
4277 7948 2.715763 AAGGGGTTCTGTAGAGTCCA 57.284 50.000 6.31 0.00 0.00 4.02
4278 7949 2.239681 AGGGGTTCTGTAGAGTCCAG 57.760 55.000 6.31 0.00 0.00 3.86
4279 7950 1.717077 AGGGGTTCTGTAGAGTCCAGA 59.283 52.381 0.00 0.00 37.18 3.86
4280 7951 2.104170 GGGGTTCTGTAGAGTCCAGAG 58.896 57.143 0.28 0.00 39.91 3.35
4365 8064 1.750193 AGGTGGAATGTGTTATGCCG 58.250 50.000 0.00 0.00 0.00 5.69
4367 8066 0.100503 GTGGAATGTGTTATGCCGGC 59.899 55.000 22.73 22.73 0.00 6.13
4385 8084 2.419021 CGGCCTTAAAGTGATACGGGAA 60.419 50.000 0.00 0.00 0.00 3.97
4386 8085 3.743269 CGGCCTTAAAGTGATACGGGAAT 60.743 47.826 0.00 0.00 0.00 3.01
4401 8161 3.181454 ACGGGAATAGACCATCCAATGTC 60.181 47.826 0.00 0.00 37.46 3.06
4403 8163 2.808543 GGAATAGACCATCCAATGTCGC 59.191 50.000 0.00 0.00 35.71 5.19
4438 8198 9.757227 ATTTTAAATCGAATTTGACCAAACAGA 57.243 25.926 0.00 0.00 33.82 3.41
4441 8201 5.766150 ATCGAATTTGACCAAACAGAACA 57.234 34.783 0.00 0.00 32.51 3.18
4463 8223 2.886862 TTTCATGCAAACAGGGTGTG 57.113 45.000 0.00 0.00 0.00 3.82
4568 8331 1.585521 GACGGTGACCTCATACGCG 60.586 63.158 3.53 3.53 34.14 6.01
4569 8332 2.262471 GACGGTGACCTCATACGCGT 62.262 60.000 19.17 19.17 34.14 6.01
4570 8333 1.585521 CGGTGACCTCATACGCGTC 60.586 63.158 18.63 0.00 0.00 5.19
4571 8334 1.585521 GGTGACCTCATACGCGTCG 60.586 63.158 18.63 8.98 0.00 5.12
4572 8335 2.101575 TGACCTCATACGCGTCGC 59.898 61.111 18.63 7.29 0.00 5.19
4573 8336 2.404186 TGACCTCATACGCGTCGCT 61.404 57.895 18.63 0.00 0.00 4.93
4574 8337 1.939785 GACCTCATACGCGTCGCTG 60.940 63.158 18.63 12.74 0.00 5.18
4575 8338 2.319011 GACCTCATACGCGTCGCTGA 62.319 60.000 18.63 16.54 0.00 4.26
4576 8339 1.939785 CCTCATACGCGTCGCTGAC 60.940 63.158 18.63 0.00 0.00 3.51
4577 8340 1.939785 CTCATACGCGTCGCTGACC 60.940 63.158 18.63 0.00 0.00 4.02
4578 8341 2.102357 CATACGCGTCGCTGACCT 59.898 61.111 18.63 0.00 0.00 3.85
4579 8342 2.102357 ATACGCGTCGCTGACCTG 59.898 61.111 18.63 0.44 0.00 4.00
4580 8343 4.771356 TACGCGTCGCTGACCTGC 62.771 66.667 18.63 2.14 0.00 4.85
4599 8362 3.244105 CAGCGGTGGAGTCGTTTG 58.756 61.111 6.74 0.00 0.00 2.93
4629 8392 3.349006 AGCAGCGAAAGTGCACGG 61.349 61.111 12.01 3.53 43.82 4.94
4630 8393 3.345808 GCAGCGAAAGTGCACGGA 61.346 61.111 12.01 0.00 40.86 4.69
4644 8407 3.423154 CGGAGTGAGGGCAAACGC 61.423 66.667 0.00 0.00 0.00 4.84
4659 8440 4.379243 CGCGGTGGACAGGCTCTT 62.379 66.667 0.00 0.00 0.00 2.85
4663 8444 2.659610 GTGGACAGGCTCTTCGCT 59.340 61.111 0.00 0.00 39.13 4.93
4665 8446 2.125350 GGACAGGCTCTTCGCTGG 60.125 66.667 0.00 0.00 39.13 4.85
4683 8464 3.299190 GAGATCGAGGAGGGGGCG 61.299 72.222 0.00 0.00 0.00 6.13
4743 8524 1.741401 CTGCGCCGTGATGAAGGAA 60.741 57.895 4.18 0.00 0.00 3.36
4757 8538 6.481644 GTGATGAAGGAAATCTATGTGAGTCC 59.518 42.308 0.00 0.00 34.63 3.85
4759 8540 5.982356 TGAAGGAAATCTATGTGAGTCCTG 58.018 41.667 0.00 0.00 40.36 3.86
4765 8546 3.942130 TCTATGTGAGTCCTGTGTGTG 57.058 47.619 0.00 0.00 0.00 3.82
4766 8547 3.230976 TCTATGTGAGTCCTGTGTGTGT 58.769 45.455 0.00 0.00 0.00 3.72
4767 8548 2.245159 ATGTGAGTCCTGTGTGTGTG 57.755 50.000 0.00 0.00 0.00 3.82
4768 8549 0.901827 TGTGAGTCCTGTGTGTGTGT 59.098 50.000 0.00 0.00 0.00 3.72
4769 8550 1.290203 GTGAGTCCTGTGTGTGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
4770 8551 0.901827 TGAGTCCTGTGTGTGTGTGT 59.098 50.000 0.00 0.00 0.00 3.72
4771 8552 1.290203 GAGTCCTGTGTGTGTGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
4772 8553 0.613260 AGTCCTGTGTGTGTGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72
4773 8554 1.003118 AGTCCTGTGTGTGTGTGTGTT 59.997 47.619 0.00 0.00 0.00 3.32
4774 8555 2.235155 AGTCCTGTGTGTGTGTGTGTTA 59.765 45.455 0.00 0.00 0.00 2.41
4775 8556 2.350498 GTCCTGTGTGTGTGTGTGTTAC 59.650 50.000 0.00 0.00 0.00 2.50
4776 8557 2.235155 TCCTGTGTGTGTGTGTGTTACT 59.765 45.455 0.00 0.00 0.00 2.24
4813 8594 3.868077 CCTCTGTCTCGATGTGATTTTCC 59.132 47.826 0.00 0.00 0.00 3.13
4814 8595 4.382470 CCTCTGTCTCGATGTGATTTTCCT 60.382 45.833 0.00 0.00 0.00 3.36
4825 8606 4.326826 TGTGATTTTCCTGTGTCTCATCC 58.673 43.478 0.00 0.00 0.00 3.51
4826 8607 3.372206 GTGATTTTCCTGTGTCTCATCCG 59.628 47.826 0.00 0.00 0.00 4.18
4827 8608 2.472695 TTTTCCTGTGTCTCATCCGG 57.527 50.000 0.00 0.00 0.00 5.14
4828 8609 0.613260 TTTCCTGTGTCTCATCCGGG 59.387 55.000 0.00 0.00 0.00 5.73
4829 8610 1.264749 TTCCTGTGTCTCATCCGGGG 61.265 60.000 0.00 0.00 0.00 5.73
4830 8611 1.685765 CCTGTGTCTCATCCGGGGA 60.686 63.158 0.00 0.00 0.00 4.81
4831 8612 1.264749 CCTGTGTCTCATCCGGGGAA 61.265 60.000 0.00 0.00 0.00 3.97
4832 8613 0.613260 CTGTGTCTCATCCGGGGAAA 59.387 55.000 0.00 0.00 0.00 3.13
4833 8614 0.613260 TGTGTCTCATCCGGGGAAAG 59.387 55.000 0.00 0.00 0.00 2.62
4834 8615 0.613777 GTGTCTCATCCGGGGAAAGT 59.386 55.000 0.00 0.00 0.00 2.66
4835 8616 1.003233 GTGTCTCATCCGGGGAAAGTT 59.997 52.381 0.00 0.00 0.00 2.66
4836 8617 1.702957 TGTCTCATCCGGGGAAAGTTT 59.297 47.619 0.00 0.00 0.00 2.66
4837 8618 2.290071 TGTCTCATCCGGGGAAAGTTTC 60.290 50.000 7.09 7.09 0.00 2.78
4838 8619 1.982226 TCTCATCCGGGGAAAGTTTCA 59.018 47.619 17.16 0.00 0.00 2.69
4839 8620 2.084546 CTCATCCGGGGAAAGTTTCAC 58.915 52.381 17.16 13.61 0.00 3.18
4840 8621 1.422024 TCATCCGGGGAAAGTTTCACA 59.578 47.619 19.28 0.00 33.74 3.58
4841 8622 2.041081 TCATCCGGGGAAAGTTTCACAT 59.959 45.455 19.28 1.92 33.74 3.21
4842 8623 1.904287 TCCGGGGAAAGTTTCACATG 58.096 50.000 19.28 10.71 33.74 3.21
4843 8624 1.422024 TCCGGGGAAAGTTTCACATGA 59.578 47.619 19.28 11.58 33.74 3.07
4844 8625 2.041081 TCCGGGGAAAGTTTCACATGAT 59.959 45.455 19.28 0.00 33.74 2.45
4845 8626 3.264706 TCCGGGGAAAGTTTCACATGATA 59.735 43.478 19.28 1.25 33.74 2.15
4846 8627 3.377172 CCGGGGAAAGTTTCACATGATAC 59.623 47.826 19.28 0.20 33.74 2.24
4847 8628 3.377172 CGGGGAAAGTTTCACATGATACC 59.623 47.826 19.28 7.35 33.74 2.73
4848 8629 4.340617 GGGGAAAGTTTCACATGATACCA 58.659 43.478 19.28 0.00 33.74 3.25
4849 8630 4.770010 GGGGAAAGTTTCACATGATACCAA 59.230 41.667 19.28 0.00 33.74 3.67
4850 8631 5.105756 GGGGAAAGTTTCACATGATACCAAG 60.106 44.000 19.28 0.00 33.74 3.61
4851 8632 5.476945 GGGAAAGTTTCACATGATACCAAGT 59.523 40.000 17.16 0.00 31.89 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.969043 TGGAATACCAAGTTGTCATATTCCT 58.031 36.000 29.02 6.78 46.15 3.36
24 25 4.263462 TGAAGATAGCATCCACACCTTTGT 60.263 41.667 0.00 0.00 35.84 2.83
25 26 4.264253 TGAAGATAGCATCCACACCTTTG 58.736 43.478 0.00 0.00 0.00 2.77
26 27 4.574674 TGAAGATAGCATCCACACCTTT 57.425 40.909 0.00 0.00 0.00 3.11
27 28 4.458397 CATGAAGATAGCATCCACACCTT 58.542 43.478 0.00 0.00 0.00 3.50
28 29 3.746751 GCATGAAGATAGCATCCACACCT 60.747 47.826 0.00 0.00 0.00 4.00
29 30 2.551459 GCATGAAGATAGCATCCACACC 59.449 50.000 0.00 0.00 0.00 4.16
30 31 3.208594 TGCATGAAGATAGCATCCACAC 58.791 45.455 0.00 0.00 32.55 3.82
31 32 3.473625 CTGCATGAAGATAGCATCCACA 58.526 45.455 0.00 0.00 37.68 4.17
32 33 2.225963 GCTGCATGAAGATAGCATCCAC 59.774 50.000 4.31 0.00 37.68 4.02
33 34 2.501261 GCTGCATGAAGATAGCATCCA 58.499 47.619 4.31 0.00 37.68 3.41
34 35 1.811359 GGCTGCATGAAGATAGCATCC 59.189 52.381 4.31 0.00 37.39 3.51
35 36 1.811359 GGGCTGCATGAAGATAGCATC 59.189 52.381 4.31 0.00 37.68 3.91
36 37 1.547223 GGGGCTGCATGAAGATAGCAT 60.547 52.381 4.31 0.00 37.68 3.79
37 38 0.179009 GGGGCTGCATGAAGATAGCA 60.179 55.000 4.31 0.00 37.89 3.49
38 39 0.110104 AGGGGCTGCATGAAGATAGC 59.890 55.000 4.31 1.46 35.49 2.97
39 40 2.228059 CAAGGGGCTGCATGAAGATAG 58.772 52.381 4.31 0.00 0.00 2.08
40 41 1.751733 GCAAGGGGCTGCATGAAGATA 60.752 52.381 4.31 0.00 42.17 1.98
41 42 1.041447 GCAAGGGGCTGCATGAAGAT 61.041 55.000 4.31 0.00 42.17 2.40
42 43 1.679977 GCAAGGGGCTGCATGAAGA 60.680 57.895 4.31 0.00 42.17 2.87
43 44 2.890371 GCAAGGGGCTGCATGAAG 59.110 61.111 0.50 0.00 42.17 3.02
52 53 0.613012 AACATTCAGGAGCAAGGGGC 60.613 55.000 0.00 0.00 45.30 5.80
53 54 1.547372 CAAACATTCAGGAGCAAGGGG 59.453 52.381 0.00 0.00 0.00 4.79
54 55 1.067354 GCAAACATTCAGGAGCAAGGG 60.067 52.381 0.00 0.00 0.00 3.95
55 56 1.614903 TGCAAACATTCAGGAGCAAGG 59.385 47.619 0.00 0.00 0.00 3.61
56 57 2.034939 TGTGCAAACATTCAGGAGCAAG 59.965 45.455 0.00 0.00 33.37 4.01
57 58 2.030371 TGTGCAAACATTCAGGAGCAA 58.970 42.857 0.00 0.00 33.37 3.91
58 59 1.689984 TGTGCAAACATTCAGGAGCA 58.310 45.000 0.00 0.00 0.00 4.26
59 60 2.669364 CTTGTGCAAACATTCAGGAGC 58.331 47.619 0.00 0.00 0.00 4.70
60 61 2.608752 GGCTTGTGCAAACATTCAGGAG 60.609 50.000 0.00 0.00 41.91 3.69
61 62 1.340889 GGCTTGTGCAAACATTCAGGA 59.659 47.619 0.00 0.00 41.91 3.86
62 63 1.342174 AGGCTTGTGCAAACATTCAGG 59.658 47.619 0.00 0.00 41.91 3.86
63 64 2.400399 CAGGCTTGTGCAAACATTCAG 58.600 47.619 0.00 0.00 41.91 3.02
64 65 1.068895 CCAGGCTTGTGCAAACATTCA 59.931 47.619 0.00 0.00 41.91 2.57
65 66 1.340889 TCCAGGCTTGTGCAAACATTC 59.659 47.619 0.00 0.00 41.91 2.67
66 67 1.342174 CTCCAGGCTTGTGCAAACATT 59.658 47.619 0.00 0.00 41.91 2.71
67 68 0.963962 CTCCAGGCTTGTGCAAACAT 59.036 50.000 0.00 0.00 41.91 2.71
68 69 0.106769 TCTCCAGGCTTGTGCAAACA 60.107 50.000 0.00 0.00 41.91 2.83
69 70 1.032014 TTCTCCAGGCTTGTGCAAAC 58.968 50.000 0.00 0.00 41.91 2.93
70 71 1.682854 CTTTCTCCAGGCTTGTGCAAA 59.317 47.619 0.00 0.00 41.91 3.68
71 72 1.321474 CTTTCTCCAGGCTTGTGCAA 58.679 50.000 0.00 0.00 41.91 4.08
72 73 0.538057 CCTTTCTCCAGGCTTGTGCA 60.538 55.000 0.00 0.00 41.91 4.57
73 74 0.538287 ACCTTTCTCCAGGCTTGTGC 60.538 55.000 0.00 0.00 37.47 4.57
74 75 1.242076 CACCTTTCTCCAGGCTTGTG 58.758 55.000 0.00 0.00 37.47 3.33
75 76 0.538287 GCACCTTTCTCCAGGCTTGT 60.538 55.000 0.00 0.00 37.47 3.16
76 77 0.251077 AGCACCTTTCTCCAGGCTTG 60.251 55.000 0.00 0.00 37.47 4.01
77 78 0.037447 GAGCACCTTTCTCCAGGCTT 59.963 55.000 0.00 0.00 37.47 4.35
78 79 0.839853 AGAGCACCTTTCTCCAGGCT 60.840 55.000 0.00 0.00 37.47 4.58
79 80 0.037447 AAGAGCACCTTTCTCCAGGC 59.963 55.000 0.00 0.00 37.47 4.85
80 81 2.575805 AAAGAGCACCTTTCTCCAGG 57.424 50.000 0.00 0.00 40.97 4.45
81 82 3.480470 TGAAAAGAGCACCTTTCTCCAG 58.520 45.455 6.75 0.00 43.90 3.86
82 83 3.576078 TGAAAAGAGCACCTTTCTCCA 57.424 42.857 6.75 3.32 43.90 3.86
83 84 5.010012 TCAAATGAAAAGAGCACCTTTCTCC 59.990 40.000 6.75 1.30 43.90 3.71
84 85 6.076981 TCAAATGAAAAGAGCACCTTTCTC 57.923 37.500 6.75 6.75 43.90 2.87
85 86 6.469782 TTCAAATGAAAAGAGCACCTTTCT 57.530 33.333 6.75 0.00 43.90 2.52
86 87 5.176406 GCTTCAAATGAAAAGAGCACCTTTC 59.824 40.000 4.86 1.99 43.90 2.62
87 88 5.052481 GCTTCAAATGAAAAGAGCACCTTT 58.948 37.500 0.00 0.00 46.47 3.11
88 89 4.099881 TGCTTCAAATGAAAAGAGCACCTT 59.900 37.500 3.94 0.00 36.47 3.50
89 90 3.638160 TGCTTCAAATGAAAAGAGCACCT 59.362 39.130 3.94 0.00 33.07 4.00
90 91 3.981211 TGCTTCAAATGAAAAGAGCACC 58.019 40.909 3.94 0.00 33.07 5.01
91 92 4.624452 GGATGCTTCAAATGAAAAGAGCAC 59.376 41.667 9.09 4.98 35.38 4.40
92 93 4.616604 CGGATGCTTCAAATGAAAAGAGCA 60.617 41.667 9.27 9.27 36.43 4.26
93 94 3.855950 CGGATGCTTCAAATGAAAAGAGC 59.144 43.478 1.64 0.00 33.07 4.09
94 95 5.051891 ACGGATGCTTCAAATGAAAAGAG 57.948 39.130 1.64 0.00 33.07 2.85
95 96 5.937540 TCTACGGATGCTTCAAATGAAAAGA 59.062 36.000 1.64 0.00 33.07 2.52
96 97 6.182039 TCTACGGATGCTTCAAATGAAAAG 57.818 37.500 1.64 0.00 33.07 2.27
97 98 5.391950 GCTCTACGGATGCTTCAAATGAAAA 60.392 40.000 1.64 0.00 33.07 2.29
98 99 4.094887 GCTCTACGGATGCTTCAAATGAAA 59.905 41.667 1.64 0.00 33.07 2.69
99 100 3.623060 GCTCTACGGATGCTTCAAATGAA 59.377 43.478 1.64 0.00 0.00 2.57
100 101 3.198068 GCTCTACGGATGCTTCAAATGA 58.802 45.455 1.64 0.00 0.00 2.57
101 102 2.289002 GGCTCTACGGATGCTTCAAATG 59.711 50.000 1.64 0.00 0.00 2.32
102 103 2.171448 AGGCTCTACGGATGCTTCAAAT 59.829 45.455 1.64 0.00 0.00 2.32
103 104 1.555075 AGGCTCTACGGATGCTTCAAA 59.445 47.619 1.64 0.00 0.00 2.69
104 105 1.137086 GAGGCTCTACGGATGCTTCAA 59.863 52.381 7.40 0.00 33.81 2.69
105 106 0.747255 GAGGCTCTACGGATGCTTCA 59.253 55.000 7.40 0.00 33.81 3.02
106 107 1.036707 AGAGGCTCTACGGATGCTTC 58.963 55.000 17.09 0.00 33.80 3.86
107 108 0.749649 CAGAGGCTCTACGGATGCTT 59.250 55.000 18.26 0.00 0.00 3.91
108 109 0.396417 ACAGAGGCTCTACGGATGCT 60.396 55.000 18.26 0.00 0.00 3.79
109 110 0.249238 CACAGAGGCTCTACGGATGC 60.249 60.000 18.26 0.00 0.00 3.91
110 111 0.249238 GCACAGAGGCTCTACGGATG 60.249 60.000 18.26 11.40 0.00 3.51
111 112 1.395826 GGCACAGAGGCTCTACGGAT 61.396 60.000 18.26 0.00 40.24 4.18
112 113 2.052690 GGCACAGAGGCTCTACGGA 61.053 63.158 18.26 0.00 40.24 4.69
113 114 2.351244 TGGCACAGAGGCTCTACGG 61.351 63.158 18.26 10.57 44.55 4.02
114 115 3.288484 TGGCACAGAGGCTCTACG 58.712 61.111 18.26 12.17 44.55 3.51
129 130 1.666209 GGTGGGATGGCGTGAAATGG 61.666 60.000 0.00 0.00 0.00 3.16
130 131 0.680921 AGGTGGGATGGCGTGAAATG 60.681 55.000 0.00 0.00 0.00 2.32
131 132 0.394352 GAGGTGGGATGGCGTGAAAT 60.394 55.000 0.00 0.00 0.00 2.17
132 133 1.002624 GAGGTGGGATGGCGTGAAA 60.003 57.895 0.00 0.00 0.00 2.69
133 134 2.668632 GAGGTGGGATGGCGTGAA 59.331 61.111 0.00 0.00 0.00 3.18
134 135 3.399181 GGAGGTGGGATGGCGTGA 61.399 66.667 0.00 0.00 0.00 4.35
135 136 4.838152 CGGAGGTGGGATGGCGTG 62.838 72.222 0.00 0.00 0.00 5.34
137 138 4.530857 GACGGAGGTGGGATGGCG 62.531 72.222 0.00 0.00 0.00 5.69
138 139 4.530857 CGACGGAGGTGGGATGGC 62.531 72.222 0.00 0.00 0.00 4.40
139 140 1.686325 AATCGACGGAGGTGGGATGG 61.686 60.000 0.00 0.00 0.00 3.51
140 141 0.178068 AAATCGACGGAGGTGGGATG 59.822 55.000 0.00 0.00 0.00 3.51
141 142 0.464452 GAAATCGACGGAGGTGGGAT 59.536 55.000 0.00 0.00 0.00 3.85
169 170 1.143073 GGGAATAAAGGCGGAGATGGT 59.857 52.381 0.00 0.00 0.00 3.55
170 171 1.142870 TGGGAATAAAGGCGGAGATGG 59.857 52.381 0.00 0.00 0.00 3.51
176 177 1.822186 CGGGTGGGAATAAAGGCGG 60.822 63.158 0.00 0.00 0.00 6.13
182 183 0.395036 CATGGTGCGGGTGGGAATAA 60.395 55.000 0.00 0.00 0.00 1.40
217 218 3.431725 GAGTCGGGGGCAAAAGCG 61.432 66.667 0.00 0.00 0.00 4.68
233 235 1.524008 TTTCGAGCGAGTCAGGCTGA 61.524 55.000 14.43 14.43 41.72 4.26
264 266 4.802051 TGGCTCGCTGGGAATGCC 62.802 66.667 15.36 15.36 43.49 4.40
267 269 4.496336 GCCTGGCTCGCTGGGAAT 62.496 66.667 12.43 0.00 0.00 3.01
280 282 2.746362 CCTTAAAGCAGTTCAGAGCCTG 59.254 50.000 0.00 0.00 0.00 4.85
286 288 3.560068 ACACGAACCTTAAAGCAGTTCAG 59.440 43.478 0.00 0.00 39.89 3.02
294 296 3.985279 TCACATCGACACGAACCTTAAAG 59.015 43.478 0.00 0.00 39.99 1.85
314 316 1.486310 CATACAAGTAGGCCAGGCTCA 59.514 52.381 12.43 0.00 0.00 4.26
356 358 3.052082 CAACCAGGACTGCGCAGG 61.052 66.667 38.27 24.96 0.00 4.85
358 360 4.641645 CCCAACCAGGACTGCGCA 62.642 66.667 10.98 10.98 41.22 6.09
365 367 0.913934 TGCATAGAGCCCAACCAGGA 60.914 55.000 0.00 0.00 44.83 3.86
387 389 9.787435 AAACTAGTCTAATGATGTGTTTGGTTA 57.213 29.630 0.00 0.00 0.00 2.85
411 413 9.810545 CATAAACAAAAGGGTTCAGAAGTTAAA 57.189 29.630 0.00 0.00 0.00 1.52
415 417 6.238648 CGTCATAAACAAAAGGGTTCAGAAGT 60.239 38.462 0.00 0.00 0.00 3.01
425 427 7.922505 TCACATTTTCGTCATAAACAAAAGG 57.077 32.000 0.00 0.00 31.77 3.11
438 440 4.096382 GGGCTACATTCATCACATTTTCGT 59.904 41.667 0.00 0.00 0.00 3.85
440 442 4.498009 CCGGGCTACATTCATCACATTTTC 60.498 45.833 0.00 0.00 0.00 2.29
449 451 5.197451 TCATTTAAACCGGGCTACATTCAT 58.803 37.500 6.32 0.00 0.00 2.57
450 452 4.590918 TCATTTAAACCGGGCTACATTCA 58.409 39.130 6.32 0.00 0.00 2.57
457 459 6.109156 AGAATTTTTCATTTAAACCGGGCT 57.891 33.333 6.32 0.00 0.00 5.19
459 461 9.483916 AAACTAGAATTTTTCATTTAAACCGGG 57.516 29.630 6.32 0.00 0.00 5.73
495 497 7.307396 CCGCATATATTTCAAACGTCAGAAGAT 60.307 37.037 0.00 0.00 0.00 2.40
501 503 3.002862 GGCCGCATATATTTCAAACGTCA 59.997 43.478 0.00 0.00 0.00 4.35
503 505 2.292292 GGGCCGCATATATTTCAAACGT 59.708 45.455 0.00 0.00 0.00 3.99
507 509 2.264005 ACGGGCCGCATATATTTCAA 57.736 45.000 28.71 0.00 0.00 2.69
524 526 0.511221 CCAACCGTGTAGCTCAAACG 59.489 55.000 8.37 8.37 37.07 3.60
525 527 1.873698 TCCAACCGTGTAGCTCAAAC 58.126 50.000 0.00 0.00 0.00 2.93
528 530 0.973632 ACATCCAACCGTGTAGCTCA 59.026 50.000 0.00 0.00 0.00 4.26
529 531 1.204941 AGACATCCAACCGTGTAGCTC 59.795 52.381 0.00 0.00 0.00 4.09
530 532 1.066858 CAGACATCCAACCGTGTAGCT 60.067 52.381 0.00 0.00 0.00 3.32
531 533 1.067142 TCAGACATCCAACCGTGTAGC 60.067 52.381 0.00 0.00 0.00 3.58
532 534 2.029380 TGTCAGACATCCAACCGTGTAG 60.029 50.000 0.00 0.00 0.00 2.74
578 580 2.159142 AGGTGTTTCGTAGATTAGGGCG 60.159 50.000 0.00 0.00 35.04 6.13
658 660 4.524714 TCCAGGATTCACGGATATCTCTTC 59.475 45.833 2.05 0.00 0.00 2.87
683 685 2.027314 GCATGTGCAAACGCCACA 59.973 55.556 0.00 0.00 46.10 4.17
684 686 2.734346 GGCATGTGCAAACGCCAC 60.734 61.111 9.64 0.00 44.25 5.01
779 795 8.627403 TCTATTTGTATTTGTACGAGTAGGAGG 58.373 37.037 0.00 0.00 29.62 4.30
805 821 9.372369 CGGAGTAGTATTTTCTTCTTCTGAATT 57.628 33.333 0.00 0.00 0.00 2.17
806 822 8.532819 ACGGAGTAGTATTTTCTTCTTCTGAAT 58.467 33.333 0.00 0.00 41.94 2.57
825 850 2.783609 ACTGAGCTAGTGACGGAGTA 57.216 50.000 0.00 0.00 37.29 2.59
826 851 1.912417 AACTGAGCTAGTGACGGAGT 58.088 50.000 0.00 0.00 41.84 3.85
827 852 3.057174 AGAAAACTGAGCTAGTGACGGAG 60.057 47.826 0.00 0.00 40.26 4.63
828 853 2.891580 AGAAAACTGAGCTAGTGACGGA 59.108 45.455 0.00 0.00 40.26 4.69
829 854 2.989840 CAGAAAACTGAGCTAGTGACGG 59.010 50.000 0.00 0.00 40.26 4.79
830 855 3.643763 ACAGAAAACTGAGCTAGTGACG 58.356 45.455 0.00 0.00 40.26 4.35
831 856 5.050490 TGAACAGAAAACTGAGCTAGTGAC 58.950 41.667 0.00 0.00 40.26 3.67
832 857 5.276461 TGAACAGAAAACTGAGCTAGTGA 57.724 39.130 0.00 0.00 40.26 3.41
833 858 5.991328 TTGAACAGAAAACTGAGCTAGTG 57.009 39.130 0.00 0.00 40.26 2.74
834 859 6.291377 TGATTGAACAGAAAACTGAGCTAGT 58.709 36.000 0.00 0.00 42.89 2.57
849 874 2.143122 GCTCGTGTCCTTGATTGAACA 58.857 47.619 0.00 0.00 0.00 3.18
854 879 1.201429 AGGGGCTCGTGTCCTTGATT 61.201 55.000 8.20 0.00 38.23 2.57
879 904 1.157257 TGTGTGGTGTGTGTGCGATC 61.157 55.000 0.00 0.00 0.00 3.69
928 953 1.059913 ATTTATGGAGCGGGGGAGAG 58.940 55.000 0.00 0.00 0.00 3.20
962 987 0.750182 GGGGAGTGACGAGAGGAGAG 60.750 65.000 0.00 0.00 0.00 3.20
963 988 1.303615 GGGGAGTGACGAGAGGAGA 59.696 63.158 0.00 0.00 0.00 3.71
964 989 1.755008 GGGGGAGTGACGAGAGGAG 60.755 68.421 0.00 0.00 0.00 3.69
965 990 2.359404 GGGGGAGTGACGAGAGGA 59.641 66.667 0.00 0.00 0.00 3.71
993 1018 1.194121 AAAATGGAGGTGGGGCTTGC 61.194 55.000 0.00 0.00 0.00 4.01
1693 1724 2.919229 CAAAAGAATTCTGCGGCATGTC 59.081 45.455 9.17 0.00 0.00 3.06
1808 2038 2.038164 ACGTATGCATCATGCTCCTCAT 59.962 45.455 11.84 0.00 45.31 2.90
1918 2461 8.738645 ACATACTATCCTCCTTTTTGTTCATC 57.261 34.615 0.00 0.00 0.00 2.92
1969 2517 7.973388 GCATCATGGCAGTACTTAATTTTTACA 59.027 33.333 0.00 0.00 0.00 2.41
1970 2518 8.190784 AGCATCATGGCAGTACTTAATTTTTAC 58.809 33.333 0.00 0.00 35.83 2.01
1971 2519 8.292444 AGCATCATGGCAGTACTTAATTTTTA 57.708 30.769 0.00 0.00 35.83 1.52
1974 2522 6.780457 AAGCATCATGGCAGTACTTAATTT 57.220 33.333 0.00 0.00 35.83 1.82
1977 2525 6.414732 AGTAAAGCATCATGGCAGTACTTAA 58.585 36.000 0.00 0.00 34.13 1.85
1983 2531 2.648059 GGAGTAAAGCATCATGGCAGT 58.352 47.619 0.00 0.00 35.83 4.40
2000 2548 2.168496 TCTAAACTGTGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
2001 2549 2.297698 TCTAAACTGTGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
2002 2550 2.353803 CCTTCTAAACTGTGACGGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
2003 2551 2.931320 GCCTTCTAAACTGTGACGGAGG 60.931 54.545 0.00 0.00 0.00 4.30
2004 2552 2.288825 TGCCTTCTAAACTGTGACGGAG 60.289 50.000 0.00 0.00 0.00 4.63
2006 2554 1.798813 GTGCCTTCTAAACTGTGACGG 59.201 52.381 0.00 0.00 0.00 4.79
2007 2555 2.476619 CTGTGCCTTCTAAACTGTGACG 59.523 50.000 0.00 0.00 0.00 4.35
2008 2556 3.467803 ACTGTGCCTTCTAAACTGTGAC 58.532 45.455 0.00 0.00 0.00 3.67
2009 2557 3.838244 ACTGTGCCTTCTAAACTGTGA 57.162 42.857 0.00 0.00 0.00 3.58
2010 2558 6.371809 TTTAACTGTGCCTTCTAAACTGTG 57.628 37.500 0.00 0.00 0.00 3.66
2011 2559 7.582667 AATTTAACTGTGCCTTCTAAACTGT 57.417 32.000 0.00 0.00 0.00 3.55
2012 2560 7.096065 GCAAATTTAACTGTGCCTTCTAAACTG 60.096 37.037 0.00 0.00 0.00 3.16
2013 2561 6.923508 GCAAATTTAACTGTGCCTTCTAAACT 59.076 34.615 0.00 0.00 0.00 2.66
2014 2562 6.129194 CGCAAATTTAACTGTGCCTTCTAAAC 60.129 38.462 2.62 0.00 33.33 2.01
2015 2563 5.918011 CGCAAATTTAACTGTGCCTTCTAAA 59.082 36.000 2.62 0.00 33.33 1.85
2016 2564 5.009210 ACGCAAATTTAACTGTGCCTTCTAA 59.991 36.000 2.62 0.00 33.33 2.10
2017 2565 4.517453 ACGCAAATTTAACTGTGCCTTCTA 59.483 37.500 2.62 0.00 33.33 2.10
2018 2566 3.317993 ACGCAAATTTAACTGTGCCTTCT 59.682 39.130 2.62 0.00 33.33 2.85
2019 2567 3.425193 CACGCAAATTTAACTGTGCCTTC 59.575 43.478 2.62 0.00 33.33 3.46
2020 2568 3.181480 ACACGCAAATTTAACTGTGCCTT 60.181 39.130 2.62 0.00 33.33 4.35
2021 2569 2.360801 ACACGCAAATTTAACTGTGCCT 59.639 40.909 2.62 0.00 33.33 4.75
2022 2570 2.470999 CACACGCAAATTTAACTGTGCC 59.529 45.455 2.62 0.00 33.33 5.01
2023 2571 3.112580 ACACACGCAAATTTAACTGTGC 58.887 40.909 15.90 0.00 33.75 4.57
2024 2572 3.728718 GGACACACGCAAATTTAACTGTG 59.271 43.478 14.97 14.97 36.03 3.66
2025 2573 3.378742 TGGACACACGCAAATTTAACTGT 59.621 39.130 0.00 0.00 0.00 3.55
2026 2574 3.728718 GTGGACACACGCAAATTTAACTG 59.271 43.478 0.00 0.00 37.94 3.16
2027 2575 3.959943 GTGGACACACGCAAATTTAACT 58.040 40.909 0.00 0.00 37.94 2.24
2040 2588 4.431416 AACCTTGTCTATTGTGGACACA 57.569 40.909 0.13 0.13 42.41 3.72
2041 2589 6.708949 TCTTAAACCTTGTCTATTGTGGACAC 59.291 38.462 0.00 0.00 42.41 3.67
2042 2590 6.708949 GTCTTAAACCTTGTCTATTGTGGACA 59.291 38.462 0.00 0.00 41.23 4.02
2043 2591 6.128634 CGTCTTAAACCTTGTCTATTGTGGAC 60.129 42.308 0.00 0.00 0.00 4.02
2044 2592 5.929992 CGTCTTAAACCTTGTCTATTGTGGA 59.070 40.000 0.00 0.00 0.00 4.02
2045 2593 5.390567 GCGTCTTAAACCTTGTCTATTGTGG 60.391 44.000 0.00 0.00 0.00 4.17
2046 2594 5.178623 TGCGTCTTAAACCTTGTCTATTGTG 59.821 40.000 0.00 0.00 0.00 3.33
2047 2595 5.302360 TGCGTCTTAAACCTTGTCTATTGT 58.698 37.500 0.00 0.00 0.00 2.71
2048 2596 5.856126 TGCGTCTTAAACCTTGTCTATTG 57.144 39.130 0.00 0.00 0.00 1.90
2049 2597 6.622896 GCAATGCGTCTTAAACCTTGTCTATT 60.623 38.462 0.00 0.00 0.00 1.73
2050 2598 5.163754 GCAATGCGTCTTAAACCTTGTCTAT 60.164 40.000 0.00 0.00 0.00 1.98
2051 2599 4.153475 GCAATGCGTCTTAAACCTTGTCTA 59.847 41.667 0.00 0.00 0.00 2.59
2052 2600 3.058224 GCAATGCGTCTTAAACCTTGTCT 60.058 43.478 0.00 0.00 0.00 3.41
2053 2601 3.234386 GCAATGCGTCTTAAACCTTGTC 58.766 45.455 0.00 0.00 0.00 3.18
2054 2602 2.621055 TGCAATGCGTCTTAAACCTTGT 59.379 40.909 0.00 0.00 0.00 3.16
2055 2603 3.281341 TGCAATGCGTCTTAAACCTTG 57.719 42.857 0.00 0.00 0.00 3.61
2056 2604 4.519540 AATGCAATGCGTCTTAAACCTT 57.480 36.364 0.00 0.00 0.00 3.50
2057 2605 4.519540 AAATGCAATGCGTCTTAAACCT 57.480 36.364 0.00 0.00 0.00 3.50
2058 2606 6.885735 AATAAATGCAATGCGTCTTAAACC 57.114 33.333 0.00 0.00 0.00 3.27
2059 2607 8.173321 AGAAATAAATGCAATGCGTCTTAAAC 57.827 30.769 0.00 0.00 0.00 2.01
2060 2608 9.502145 CTAGAAATAAATGCAATGCGTCTTAAA 57.498 29.630 0.00 0.00 0.00 1.52
2061 2609 8.673711 ACTAGAAATAAATGCAATGCGTCTTAA 58.326 29.630 0.00 0.00 0.00 1.85
2062 2610 8.208718 ACTAGAAATAAATGCAATGCGTCTTA 57.791 30.769 0.00 2.84 0.00 2.10
2063 2611 7.088589 ACTAGAAATAAATGCAATGCGTCTT 57.911 32.000 0.00 0.59 0.00 3.01
2064 2612 6.683974 ACTAGAAATAAATGCAATGCGTCT 57.316 33.333 0.00 0.00 0.00 4.18
2065 2613 6.575201 GCTACTAGAAATAAATGCAATGCGTC 59.425 38.462 0.00 0.00 0.00 5.19
2066 2614 6.260936 AGCTACTAGAAATAAATGCAATGCGT 59.739 34.615 0.00 0.00 0.00 5.24
2067 2615 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
2115 2663 9.154847 GCATTCATACTGCACATGTATATAGAA 57.845 33.333 0.00 0.00 39.46 2.10
2116 2664 8.534496 AGCATTCATACTGCACATGTATATAGA 58.466 33.333 0.00 0.00 42.15 1.98
2117 2665 8.713737 AGCATTCATACTGCACATGTATATAG 57.286 34.615 0.00 0.00 42.15 1.31
2119 2667 9.676861 AATAGCATTCATACTGCACATGTATAT 57.323 29.630 0.00 0.00 42.15 0.86
2120 2668 9.506018 AAATAGCATTCATACTGCACATGTATA 57.494 29.630 0.00 0.00 42.15 1.47
2121 2669 7.991084 AATAGCATTCATACTGCACATGTAT 57.009 32.000 0.00 0.00 42.15 2.29
2122 2670 7.806409 AAATAGCATTCATACTGCACATGTA 57.194 32.000 0.00 0.00 42.15 2.29
2123 2671 6.704289 AAATAGCATTCATACTGCACATGT 57.296 33.333 0.00 0.00 42.15 3.21
2124 2672 7.997107 AAAAATAGCATTCATACTGCACATG 57.003 32.000 0.00 0.00 42.15 3.21
2145 2693 6.739331 ATTGGTTGTGAGATGGGTTAAAAA 57.261 33.333 0.00 0.00 0.00 1.94
2146 2694 7.235079 TCTATTGGTTGTGAGATGGGTTAAAA 58.765 34.615 0.00 0.00 0.00 1.52
2147 2695 6.785076 TCTATTGGTTGTGAGATGGGTTAAA 58.215 36.000 0.00 0.00 0.00 1.52
2148 2696 6.381498 TCTATTGGTTGTGAGATGGGTTAA 57.619 37.500 0.00 0.00 0.00 2.01
2149 2697 6.575244 ATCTATTGGTTGTGAGATGGGTTA 57.425 37.500 0.00 0.00 0.00 2.85
2150 2698 4.927267 TCTATTGGTTGTGAGATGGGTT 57.073 40.909 0.00 0.00 0.00 4.11
2151 2699 6.357367 GTTATCTATTGGTTGTGAGATGGGT 58.643 40.000 0.00 0.00 31.25 4.51
2152 2700 5.765182 GGTTATCTATTGGTTGTGAGATGGG 59.235 44.000 0.00 0.00 31.25 4.00
2153 2701 6.260936 GTGGTTATCTATTGGTTGTGAGATGG 59.739 42.308 0.00 0.00 31.25 3.51
2154 2702 6.823182 TGTGGTTATCTATTGGTTGTGAGATG 59.177 38.462 0.00 0.00 31.25 2.90
2155 2703 6.957631 TGTGGTTATCTATTGGTTGTGAGAT 58.042 36.000 0.00 0.00 33.32 2.75
2156 2704 6.367374 TGTGGTTATCTATTGGTTGTGAGA 57.633 37.500 0.00 0.00 0.00 3.27
2157 2705 7.442364 CCTATGTGGTTATCTATTGGTTGTGAG 59.558 40.741 0.00 0.00 0.00 3.51
2158 2706 7.279615 CCTATGTGGTTATCTATTGGTTGTGA 58.720 38.462 0.00 0.00 0.00 3.58
2159 2707 7.496529 CCTATGTGGTTATCTATTGGTTGTG 57.503 40.000 0.00 0.00 0.00 3.33
2172 2720 8.278919 GGAAATTCTTTCGGACCTATGTGGTTA 61.279 40.741 0.00 0.00 44.17 2.85
2173 2721 7.523394 GGAAATTCTTTCGGACCTATGTGGTT 61.523 42.308 0.00 0.00 44.17 3.67
2174 2722 6.092358 GGAAATTCTTTCGGACCTATGTGGT 61.092 44.000 0.00 0.00 45.63 4.16
2175 2723 4.335594 GGAAATTCTTTCGGACCTATGTGG 59.664 45.833 0.00 0.00 40.57 4.17
2176 2724 5.186198 AGGAAATTCTTTCGGACCTATGTG 58.814 41.667 0.00 0.00 40.57 3.21
2177 2725 5.437191 AGGAAATTCTTTCGGACCTATGT 57.563 39.130 0.00 0.00 40.57 2.29
2178 2726 5.467063 GCTAGGAAATTCTTTCGGACCTATG 59.533 44.000 0.00 0.00 40.57 2.23
2179 2727 5.612351 GCTAGGAAATTCTTTCGGACCTAT 58.388 41.667 0.00 0.00 40.57 2.57
2180 2728 4.441079 CGCTAGGAAATTCTTTCGGACCTA 60.441 45.833 0.00 0.00 40.57 3.08
2181 2729 3.679083 CGCTAGGAAATTCTTTCGGACCT 60.679 47.826 0.00 0.00 40.57 3.85
2182 2730 2.608090 CGCTAGGAAATTCTTTCGGACC 59.392 50.000 0.00 0.00 40.57 4.46
2183 2731 2.030579 GCGCTAGGAAATTCTTTCGGAC 59.969 50.000 0.00 0.00 40.57 4.79
2184 2732 2.277084 GCGCTAGGAAATTCTTTCGGA 58.723 47.619 0.00 0.00 40.57 4.55
2185 2733 1.004927 CGCGCTAGGAAATTCTTTCGG 60.005 52.381 5.56 0.00 40.57 4.30
2186 2734 1.592350 GCGCGCTAGGAAATTCTTTCG 60.592 52.381 26.67 0.00 40.57 3.46
2187 2735 1.268083 GGCGCGCTAGGAAATTCTTTC 60.268 52.381 32.29 4.57 38.94 2.62
2188 2736 0.733150 GGCGCGCTAGGAAATTCTTT 59.267 50.000 32.29 0.00 0.00 2.52
2189 2737 0.107654 AGGCGCGCTAGGAAATTCTT 60.108 50.000 32.29 0.00 0.00 2.52
2190 2738 0.107654 AAGGCGCGCTAGGAAATTCT 60.108 50.000 32.29 13.22 0.00 2.40
2191 2739 0.305009 GAAGGCGCGCTAGGAAATTC 59.695 55.000 32.29 17.95 0.00 2.17
2192 2740 0.107654 AGAAGGCGCGCTAGGAAATT 60.108 50.000 32.29 13.77 0.00 1.82
2193 2741 0.750850 TAGAAGGCGCGCTAGGAAAT 59.249 50.000 32.29 12.93 0.00 2.17
2194 2742 0.533491 TTAGAAGGCGCGCTAGGAAA 59.467 50.000 32.29 16.96 0.00 3.13
2195 2743 0.533491 TTTAGAAGGCGCGCTAGGAA 59.467 50.000 32.29 15.72 0.00 3.36
2196 2744 0.179119 GTTTAGAAGGCGCGCTAGGA 60.179 55.000 32.29 10.15 0.00 2.94
2197 2745 1.152383 GGTTTAGAAGGCGCGCTAGG 61.152 60.000 32.29 0.00 0.00 3.02
2198 2746 1.480219 CGGTTTAGAAGGCGCGCTAG 61.480 60.000 32.29 6.25 0.00 3.42
2199 2747 1.517694 CGGTTTAGAAGGCGCGCTA 60.518 57.895 32.29 12.85 0.00 4.26
2200 2748 2.813908 CGGTTTAGAAGGCGCGCT 60.814 61.111 32.29 12.85 0.00 5.92
2201 2749 3.116531 ACGGTTTAGAAGGCGCGC 61.117 61.111 25.94 25.94 0.00 6.86
2202 2750 1.735198 TCACGGTTTAGAAGGCGCG 60.735 57.895 0.00 0.00 0.00 6.86
2203 2751 1.785951 GTCACGGTTTAGAAGGCGC 59.214 57.895 0.00 0.00 0.00 6.53
2204 2752 1.349259 CCGTCACGGTTTAGAAGGCG 61.349 60.000 8.54 0.00 42.73 5.52
2205 2753 2.452767 CCGTCACGGTTTAGAAGGC 58.547 57.895 8.54 0.00 42.73 4.35
2216 2764 0.679002 TTCCTACTCCCTCCGTCACG 60.679 60.000 0.00 0.00 0.00 4.35
2217 2765 1.553706 TTTCCTACTCCCTCCGTCAC 58.446 55.000 0.00 0.00 0.00 3.67
2218 2766 2.314071 TTTTCCTACTCCCTCCGTCA 57.686 50.000 0.00 0.00 0.00 4.35
2219 2767 2.500504 ACATTTTCCTACTCCCTCCGTC 59.499 50.000 0.00 0.00 0.00 4.79
2220 2768 2.547990 ACATTTTCCTACTCCCTCCGT 58.452 47.619 0.00 0.00 0.00 4.69
2221 2769 3.629142 AACATTTTCCTACTCCCTCCG 57.371 47.619 0.00 0.00 0.00 4.63
2222 2770 6.010850 AGAAAAACATTTTCCTACTCCCTCC 58.989 40.000 10.96 0.00 0.00 4.30
2223 2771 6.151312 GGAGAAAAACATTTTCCTACTCCCTC 59.849 42.308 10.96 0.00 34.31 4.30
2224 2772 6.010850 GGAGAAAAACATTTTCCTACTCCCT 58.989 40.000 10.96 0.00 34.31 4.20
2225 2773 5.773176 TGGAGAAAAACATTTTCCTACTCCC 59.227 40.000 18.59 5.42 36.51 4.30
2226 2774 6.894339 TGGAGAAAAACATTTTCCTACTCC 57.106 37.500 10.96 16.62 37.07 3.85
2227 2775 9.841880 GTTATGGAGAAAAACATTTTCCTACTC 57.158 33.333 10.96 3.85 0.00 2.59
2228 2776 9.362151 TGTTATGGAGAAAAACATTTTCCTACT 57.638 29.630 10.96 0.00 0.00 2.57
2229 2777 9.626045 CTGTTATGGAGAAAAACATTTTCCTAC 57.374 33.333 10.96 0.00 33.01 3.18
2230 2778 9.362151 ACTGTTATGGAGAAAAACATTTTCCTA 57.638 29.630 10.96 3.37 33.01 2.94
2231 2779 8.250143 ACTGTTATGGAGAAAAACATTTTCCT 57.750 30.769 10.96 0.00 33.01 3.36
2232 2780 9.626045 CTACTGTTATGGAGAAAAACATTTTCC 57.374 33.333 10.96 0.44 33.01 3.13
2235 2783 9.349713 TGTCTACTGTTATGGAGAAAAACATTT 57.650 29.630 0.00 0.00 33.01 2.32
2236 2784 8.918202 TGTCTACTGTTATGGAGAAAAACATT 57.082 30.769 0.00 0.00 33.01 2.71
2296 2844 2.340210 TTGCAGTGCCAGTTCAACTA 57.660 45.000 13.72 0.00 0.00 2.24
2302 2850 0.311790 CGTCAATTGCAGTGCCAGTT 59.688 50.000 13.72 1.60 0.00 3.16
2309 2857 2.553602 TCATTCTTGCGTCAATTGCAGT 59.446 40.909 0.00 0.00 44.28 4.40
2322 2870 5.830000 TGCATCTGGATTCTTCATTCTTG 57.170 39.130 0.00 0.00 0.00 3.02
2323 2871 6.366340 AGATGCATCTGGATTCTTCATTCTT 58.634 36.000 28.21 0.00 35.42 2.52
2351 2899 1.061570 CGCGGACGTGTACTACTCC 59.938 63.158 0.00 0.00 33.53 3.85
2374 2925 3.818210 AGTAGTGACTGTCTGAGTGTCTG 59.182 47.826 9.51 0.00 33.83 3.51
2452 3003 1.463674 CTTACTGTTGGGGCCACATC 58.536 55.000 9.55 9.38 0.00 3.06
2603 3174 3.619419 TGAATTTAGCTAGCCACATGCA 58.381 40.909 12.13 0.00 44.83 3.96
2844 3438 4.798682 TTCCCTCTCCCTCCCGGC 62.799 72.222 0.00 0.00 0.00 6.13
2847 3441 0.253207 TCCTTTTCCCTCTCCCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
3017 3611 2.099098 CGTTTTCAGGTTGCTGGTTCTT 59.901 45.455 0.00 0.00 0.00 2.52
3226 3824 2.202690 TTGTAGATGACGGCGGCG 60.203 61.111 31.06 31.06 0.00 6.46
3273 3871 9.167239 GTGCAAGTAAATACACTAGATAGTACG 57.833 37.037 0.00 0.00 34.13 3.67
3275 3873 7.859377 GCGTGCAAGTAAATACACTAGATAGTA 59.141 37.037 0.00 0.00 34.13 1.82
3282 3880 4.178540 GGAGCGTGCAAGTAAATACACTA 58.821 43.478 0.59 0.00 0.00 2.74
3283 3881 3.000727 GGAGCGTGCAAGTAAATACACT 58.999 45.455 0.59 0.00 0.00 3.55
3284 3882 2.739913 TGGAGCGTGCAAGTAAATACAC 59.260 45.455 0.59 0.00 0.00 2.90
3285 3883 3.046968 TGGAGCGTGCAAGTAAATACA 57.953 42.857 0.59 0.00 0.00 2.29
3286 3884 4.156182 GTTTGGAGCGTGCAAGTAAATAC 58.844 43.478 0.59 0.00 0.00 1.89
3336 3942 8.125978 ACAAATTAAGCCAAGATGAGATCAAA 57.874 30.769 0.00 0.00 0.00 2.69
3355 3961 3.322828 AGATCCACTGCAGCAAACAAATT 59.677 39.130 15.27 0.00 0.00 1.82
3365 3971 0.617413 ACCCAGAAGATCCACTGCAG 59.383 55.000 13.48 13.48 33.40 4.41
3499 4105 1.063616 CAATCTTGCATGGAGCTGACG 59.936 52.381 0.00 0.00 45.94 4.35
3504 4110 1.475280 TGCTTCAATCTTGCATGGAGC 59.525 47.619 10.81 10.81 45.96 4.70
3507 4113 3.194861 CCATTGCTTCAATCTTGCATGG 58.805 45.455 0.00 0.00 36.55 3.66
3534 4140 0.250858 CTCTGGATGGGCACAACACA 60.251 55.000 0.00 0.00 0.00 3.72
3543 4149 1.590932 CGCATTTCTCTCTGGATGGG 58.409 55.000 0.00 0.00 0.00 4.00
3578 4188 2.193536 GCGGGCCAACTGAACTGTT 61.194 57.895 4.39 0.00 0.00 3.16
3592 4202 1.091537 AATAACACGACCATTGCGGG 58.908 50.000 0.00 0.00 40.22 6.13
3612 4225 0.463620 TATGCTGCTGCCGACACATA 59.536 50.000 13.47 0.25 38.71 2.29
3626 4239 0.385751 ACTCGCACTACGCATATGCT 59.614 50.000 24.56 14.18 42.60 3.79
3640 4253 3.116531 GGCCAACCACGTACTCGC 61.117 66.667 0.00 0.00 41.18 5.03
3757 4374 1.204704 TGGATCGATCATATGGTCGCC 59.795 52.381 29.42 25.07 37.74 5.54
3805 4426 3.084039 TGATCACTTGCTTGGTGGATTC 58.916 45.455 0.00 0.00 35.61 2.52
3840 4462 5.692204 ACTCGTCACAAACAAGACAATAGAG 59.308 40.000 0.00 0.00 34.48 2.43
3844 4466 3.312421 CCACTCGTCACAAACAAGACAAT 59.688 43.478 0.00 0.00 34.48 2.71
3911 4540 1.134401 TGATCATTCGGGCTTGAGGAC 60.134 52.381 0.00 0.00 0.00 3.85
3944 4573 0.307760 AGAAAACAAGAGTTGGCGCG 59.692 50.000 0.00 0.00 38.17 6.86
4003 4632 1.816224 AGAGAAAGAGACAGCTCCGTC 59.184 52.381 0.00 0.00 42.30 4.79
4004 4633 1.816224 GAGAGAAAGAGACAGCTCCGT 59.184 52.381 0.00 0.00 42.30 4.69
4010 5756 4.054671 ACAAAAGCGAGAGAAAGAGACAG 58.945 43.478 0.00 0.00 0.00 3.51
4025 5771 7.631717 ACTATAGGAATCAAGGAACAAAAGC 57.368 36.000 4.43 0.00 0.00 3.51
4049 5799 7.047891 GGTGTAAGGATCATGACAAGTGATAA 58.952 38.462 0.00 0.00 36.49 1.75
4108 5858 2.838736 TGCAACACTCTCTCCAAAGAC 58.161 47.619 0.00 0.00 0.00 3.01
4117 5867 5.173774 TGAAAAAGACATGCAACACTCTC 57.826 39.130 0.00 0.00 0.00 3.20
4118 5868 5.779529 ATGAAAAAGACATGCAACACTCT 57.220 34.783 0.00 0.00 0.00 3.24
4148 5903 6.038271 ACAACACAAGAGTTTGTATGGTCTTC 59.962 38.462 8.99 0.00 45.53 2.87
4152 5907 7.255451 CCATTACAACACAAGAGTTTGTATGGT 60.255 37.037 8.45 0.00 45.53 3.55
4156 5911 5.533154 CCCCATTACAACACAAGAGTTTGTA 59.467 40.000 0.00 0.00 45.53 2.41
4163 5918 2.443632 TCACCCCCATTACAACACAAGA 59.556 45.455 0.00 0.00 0.00 3.02
4169 5924 4.617298 CGAAACAATCACCCCCATTACAAC 60.617 45.833 0.00 0.00 0.00 3.32
4171 5926 3.085533 CGAAACAATCACCCCCATTACA 58.914 45.455 0.00 0.00 0.00 2.41
4172 5927 3.349022 TCGAAACAATCACCCCCATTAC 58.651 45.455 0.00 0.00 0.00 1.89
4182 7851 4.157656 GGGTGGAATTGATCGAAACAATCA 59.842 41.667 17.23 11.42 37.04 2.57
4365 8064 2.994186 TCCCGTATCACTTTAAGGCC 57.006 50.000 0.00 0.00 0.00 5.19
4367 8066 6.183360 TGGTCTATTCCCGTATCACTTTAAGG 60.183 42.308 0.00 0.00 0.00 2.69
4385 8084 1.072331 GGGCGACATTGGATGGTCTAT 59.928 52.381 0.00 0.00 33.60 1.98
4386 8085 0.468226 GGGCGACATTGGATGGTCTA 59.532 55.000 0.00 0.00 33.60 2.59
4401 8161 2.970609 CGATTTAAAATGTATGCGGGCG 59.029 45.455 0.00 0.00 0.00 6.13
4403 8163 7.433719 TCAAATTCGATTTAAAATGTATGCGGG 59.566 33.333 0.00 0.00 0.00 6.13
4438 8198 4.575645 CACCCTGTTTGCATGAAATTTGTT 59.424 37.500 0.00 0.00 0.00 2.83
4441 8201 4.128643 CACACCCTGTTTGCATGAAATTT 58.871 39.130 0.00 0.00 0.00 1.82
4535 8298 2.036217 CACCGTCCACCACAAGTTAGTA 59.964 50.000 0.00 0.00 0.00 1.82
4577 8340 4.767255 GACTCCACCGCTGGGCAG 62.767 72.222 0.00 0.00 38.25 4.85
4580 8343 3.530910 AAACGACTCCACCGCTGGG 62.531 63.158 0.00 0.00 38.25 4.45
4581 8344 2.030562 AAACGACTCCACCGCTGG 59.969 61.111 0.00 0.00 39.23 4.85
4582 8345 1.284982 CTCAAACGACTCCACCGCTG 61.285 60.000 0.00 0.00 0.00 5.18
4583 8346 1.006102 CTCAAACGACTCCACCGCT 60.006 57.895 0.00 0.00 0.00 5.52
4584 8347 1.300697 ACTCAAACGACTCCACCGC 60.301 57.895 0.00 0.00 0.00 5.68
4599 8362 1.376553 GCTGCTGGAAGGACCACTC 60.377 63.158 0.00 0.00 44.64 3.51
4629 8392 3.423154 CCGCGTTTGCCCTCACTC 61.423 66.667 4.92 0.00 38.08 3.51
4630 8393 4.250305 ACCGCGTTTGCCCTCACT 62.250 61.111 4.92 0.00 38.08 3.41
4639 8402 4.250305 AGCCTGTCCACCGCGTTT 62.250 61.111 4.92 0.00 0.00 3.60
4640 8403 4.681978 GAGCCTGTCCACCGCGTT 62.682 66.667 4.92 0.00 0.00 4.84
4642 8405 4.379243 AAGAGCCTGTCCACCGCG 62.379 66.667 0.00 0.00 0.00 6.46
4644 8407 2.125912 CGAAGAGCCTGTCCACCG 60.126 66.667 0.00 0.00 0.00 4.94
4659 8440 1.527148 CTCCTCGATCTCCCAGCGA 60.527 63.158 0.00 0.00 0.00 4.93
4663 8444 2.609339 CCCCTCCTCGATCTCCCA 59.391 66.667 0.00 0.00 0.00 4.37
4665 8446 2.920384 GCCCCCTCCTCGATCTCC 60.920 72.222 0.00 0.00 0.00 3.71
4729 8510 4.024556 CACATAGATTTCCTTCATCACGGC 60.025 45.833 0.00 0.00 0.00 5.68
4743 8524 4.284490 ACACACACAGGACTCACATAGATT 59.716 41.667 0.00 0.00 0.00 2.40
4757 8538 3.000041 ACAGTAACACACACACACACAG 59.000 45.455 0.00 0.00 0.00 3.66
4759 8540 2.739913 ACACAGTAACACACACACACAC 59.260 45.455 0.00 0.00 0.00 3.82
4765 8546 4.368315 TGATGAGACACAGTAACACACAC 58.632 43.478 0.00 0.00 0.00 3.82
4766 8547 4.620982 CTGATGAGACACAGTAACACACA 58.379 43.478 0.00 0.00 0.00 3.72
4767 8548 3.430218 GCTGATGAGACACAGTAACACAC 59.570 47.826 0.00 0.00 36.62 3.82
4768 8549 3.321968 AGCTGATGAGACACAGTAACACA 59.678 43.478 0.00 0.00 36.62 3.72
4769 8550 3.919216 AGCTGATGAGACACAGTAACAC 58.081 45.455 0.00 0.00 36.62 3.32
4770 8551 3.056536 GGAGCTGATGAGACACAGTAACA 60.057 47.826 0.00 0.00 36.62 2.41
4771 8552 3.194542 AGGAGCTGATGAGACACAGTAAC 59.805 47.826 0.00 0.00 36.62 2.50
4772 8553 3.435275 AGGAGCTGATGAGACACAGTAA 58.565 45.455 0.00 0.00 36.62 2.24
4773 8554 3.020274 GAGGAGCTGATGAGACACAGTA 58.980 50.000 0.00 0.00 36.62 2.74
4774 8555 1.824230 GAGGAGCTGATGAGACACAGT 59.176 52.381 0.00 0.00 36.62 3.55
4775 8556 2.101783 AGAGGAGCTGATGAGACACAG 58.898 52.381 0.00 0.00 37.22 3.66
4776 8557 2.228545 AGAGGAGCTGATGAGACACA 57.771 50.000 0.00 0.00 0.00 3.72
4813 8594 0.613260 TTTCCCCGGATGAGACACAG 59.387 55.000 0.73 0.00 0.00 3.66
4814 8595 0.613260 CTTTCCCCGGATGAGACACA 59.387 55.000 0.73 0.00 0.00 3.72
4825 8606 3.377172 GGTATCATGTGAAACTTTCCCCG 59.623 47.826 0.00 0.00 38.04 5.73
4826 8607 4.340617 TGGTATCATGTGAAACTTTCCCC 58.659 43.478 0.00 0.00 38.04 4.81
4827 8608 5.476945 ACTTGGTATCATGTGAAACTTTCCC 59.523 40.000 0.00 0.00 38.04 3.97
4828 8609 6.575162 ACTTGGTATCATGTGAAACTTTCC 57.425 37.500 0.00 0.00 38.04 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.