Multiple sequence alignment - TraesCS2B01G225300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G225300 chr2B 100.000 6935 0 0 1 6935 215599490 215592556 0.000000e+00 12807.0
1 TraesCS2B01G225300 chr2B 98.818 423 4 1 2573 2994 135679901 135679479 0.000000e+00 752.0
2 TraesCS2B01G225300 chr2B 91.304 46 4 0 1759 1804 691250527 691250572 5.810000e-06 63.9
3 TraesCS2B01G225300 chr2A 91.893 2430 126 37 4530 6926 168982069 168979678 0.000000e+00 3330.0
4 TraesCS2B01G225300 chr2A 89.430 2630 169 56 1 2573 168986009 168983432 0.000000e+00 3216.0
5 TraesCS2B01G225300 chr2A 98.757 1368 13 2 3006 4370 168983432 168982066 0.000000e+00 2429.0
6 TraesCS2B01G225300 chr2A 96.429 168 6 0 4369 4536 94112550 94112383 1.910000e-70 278.0
7 TraesCS2B01G225300 chr2D 97.404 1348 16 10 3654 4993 158277216 158275880 0.000000e+00 2278.0
8 TraesCS2B01G225300 chr2D 92.764 1534 51 20 4989 6486 158275760 158274251 0.000000e+00 2163.0
9 TraesCS2B01G225300 chr2D 92.647 952 49 9 932 1868 158284352 158283407 0.000000e+00 1351.0
10 TraesCS2B01G225300 chr2D 96.301 784 19 7 1797 2573 158283367 158282587 0.000000e+00 1279.0
11 TraesCS2B01G225300 chr2D 96.241 665 8 3 2995 3659 158282595 158281948 0.000000e+00 1074.0
12 TraesCS2B01G225300 chr2D 83.927 927 86 29 5 887 158285351 158284444 0.000000e+00 828.0
13 TraesCS2B01G225300 chr2D 90.099 404 13 10 6545 6926 158273164 158272766 3.730000e-137 499.0
14 TraesCS2B01G225300 chr2D 96.429 168 6 0 4366 4533 161907019 161906852 1.910000e-70 278.0
15 TraesCS2B01G225300 chr2D 87.500 64 7 1 1792 1855 618291191 618291253 9.650000e-09 73.1
16 TraesCS2B01G225300 chr7B 99.526 422 2 0 2573 2994 702326446 702326025 0.000000e+00 769.0
17 TraesCS2B01G225300 chr7B 97.150 421 12 0 2574 2994 876790 876370 0.000000e+00 712.0
18 TraesCS2B01G225300 chr4B 96.919 422 13 0 2574 2995 468237312 468236891 0.000000e+00 708.0
19 TraesCS2B01G225300 chr5B 96.690 423 14 0 2573 2995 250231527 250231105 0.000000e+00 704.0
20 TraesCS2B01G225300 chr4A 94.737 456 19 5 2574 3026 577369225 577368772 0.000000e+00 704.0
21 TraesCS2B01G225300 chr4A 96.988 166 5 0 4368 4533 582530142 582529977 5.300000e-71 279.0
22 TraesCS2B01G225300 chr3A 96.690 423 14 0 2573 2995 662832392 662831970 0.000000e+00 704.0
23 TraesCS2B01G225300 chr3A 96.690 423 14 0 2572 2994 699836465 699836043 0.000000e+00 704.0
24 TraesCS2B01G225300 chr3A 91.710 193 13 3 4369 4559 649812004 649811813 1.480000e-66 265.0
25 TraesCS2B01G225300 chr3B 94.643 448 21 2 2573 3020 800636518 800636074 0.000000e+00 691.0
26 TraesCS2B01G225300 chr3B 97.006 167 5 0 4369 4535 571752525 571752691 1.470000e-71 281.0
27 TraesCS2B01G225300 chr6D 94.944 178 8 1 4366 4542 361051312 361051135 1.910000e-70 278.0
28 TraesCS2B01G225300 chr6A 95.906 171 7 0 4366 4536 105042078 105041908 1.910000e-70 278.0
29 TraesCS2B01G225300 chr5A 95.882 170 7 0 4367 4536 429513631 429513462 6.850000e-70 276.0
30 TraesCS2B01G225300 chr7A 85.000 100 11 4 1766 1863 692371740 692371837 1.590000e-16 99.0
31 TraesCS2B01G225300 chr7A 85.000 100 11 4 1766 1863 692395586 692395683 1.590000e-16 99.0
32 TraesCS2B01G225300 chr7A 84.444 90 14 0 1766 1855 198669961 198669872 9.580000e-14 89.8
33 TraesCS2B01G225300 chr7D 82.105 95 6 3 1763 1857 45933478 45933395 3.470000e-08 71.3
34 TraesCS2B01G225300 chr5D 94.737 38 2 0 1819 1856 558342849 558342812 7.510000e-05 60.2
35 TraesCS2B01G225300 chr5D 100.000 28 0 0 1834 1861 547069936 547069963 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G225300 chr2B 215592556 215599490 6934 True 12807.000000 12807 100.000000 1 6935 1 chr2B.!!$R2 6934
1 TraesCS2B01G225300 chr2A 168979678 168986009 6331 True 2991.666667 3330 93.360000 1 6926 3 chr2A.!!$R2 6925
2 TraesCS2B01G225300 chr2D 158272766 158277216 4450 True 1646.666667 2278 93.422333 3654 6926 3 chr2D.!!$R2 3272
3 TraesCS2B01G225300 chr2D 158281948 158285351 3403 True 1133.000000 1351 92.279000 5 3659 4 chr2D.!!$R3 3654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 446 0.031857 TTCGCCGGTCGTCTGTTTAA 59.968 50.000 16.00 1.36 39.67 1.52 F
887 979 0.179094 TACGCACGGCCCATAAGAAG 60.179 55.000 0.00 0.00 0.00 2.85 F
2621 2916 0.035439 GTGAGGCCTCCGGATTCAAA 60.035 55.000 29.95 4.78 0.00 2.69 F
2993 3288 0.241213 GCCTCCAAAACGCCTTTCTC 59.759 55.000 0.00 0.00 0.00 2.87 F
2994 3289 0.517316 CCTCCAAAACGCCTTTCTCG 59.483 55.000 0.00 0.00 0.00 4.04 F
2995 3290 1.508632 CTCCAAAACGCCTTTCTCGA 58.491 50.000 0.00 0.00 0.00 4.04 F
3916 4213 1.546323 CCAAGTGGCACCTTCACTGAT 60.546 52.381 15.27 0.00 43.82 2.90 F
5586 6035 0.394938 TGCTCCTAAAACGGCAGTCA 59.605 50.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1300 1452 0.035176 AAAGCACCGGCATTTGCATT 59.965 45.000 16.21 8.3 44.61 3.56 R
2791 3086 0.474466 CCATGGCCTAGGAGGATGGA 60.474 60.000 21.54 0.0 40.45 3.41 R
3672 3969 4.510571 ACTAAAAGTGTGACCAAACGAGT 58.489 39.130 0.00 0.0 0.00 4.18 R
4190 4490 5.401531 TTCTTCAGATAACTTGGCTACGT 57.598 39.130 0.00 0.0 0.00 3.57 R
4954 5260 5.423610 AGAGCAAACCTTCTCTAGCTTATCA 59.576 40.000 0.00 0.0 37.86 2.15 R
5129 5564 3.879295 CCCCAATGCATCACTGTACTAAG 59.121 47.826 0.00 0.0 0.00 2.18 R
5789 6239 0.948623 TTGACAATGGCAGTCGGACG 60.949 55.000 1.89 0.0 38.83 4.79 R
6652 8160 0.107800 TGTTGTTTTCGTCGGTCCCA 60.108 50.000 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 236 2.435805 TGCAAAACAGCCCAAAACCATA 59.564 40.909 0.00 0.00 0.00 2.74
254 279 2.481854 GGAGCATGCATCTCACTACAG 58.518 52.381 21.98 0.71 32.38 2.74
298 323 1.612676 TGCTATGTATCGCCCGTACT 58.387 50.000 0.00 0.00 0.00 2.73
384 439 2.388232 ATTTGCTTCGCCGGTCGTC 61.388 57.895 16.00 8.74 39.67 4.20
390 445 0.387622 CTTCGCCGGTCGTCTGTTTA 60.388 55.000 16.00 0.00 39.67 2.01
391 446 0.031857 TTCGCCGGTCGTCTGTTTAA 59.968 50.000 16.00 1.36 39.67 1.52
392 447 0.244450 TCGCCGGTCGTCTGTTTAAT 59.756 50.000 16.00 0.00 39.67 1.40
393 448 1.073177 CGCCGGTCGTCTGTTTAATT 58.927 50.000 1.90 0.00 0.00 1.40
394 449 1.461897 CGCCGGTCGTCTGTTTAATTT 59.538 47.619 1.90 0.00 0.00 1.82
395 450 2.096119 CGCCGGTCGTCTGTTTAATTTT 60.096 45.455 1.90 0.00 0.00 1.82
396 451 3.607542 CGCCGGTCGTCTGTTTAATTTTT 60.608 43.478 1.90 0.00 0.00 1.94
397 452 3.910170 GCCGGTCGTCTGTTTAATTTTTC 59.090 43.478 1.90 0.00 0.00 2.29
398 453 4.469552 CCGGTCGTCTGTTTAATTTTTCC 58.530 43.478 0.00 0.00 0.00 3.13
399 454 4.214758 CCGGTCGTCTGTTTAATTTTTCCT 59.785 41.667 0.00 0.00 0.00 3.36
400 455 5.278120 CCGGTCGTCTGTTTAATTTTTCCTT 60.278 40.000 0.00 0.00 0.00 3.36
401 456 6.203647 CGGTCGTCTGTTTAATTTTTCCTTT 58.796 36.000 0.00 0.00 0.00 3.11
402 457 6.693978 CGGTCGTCTGTTTAATTTTTCCTTTT 59.306 34.615 0.00 0.00 0.00 2.27
403 458 7.221259 CGGTCGTCTGTTTAATTTTTCCTTTTT 59.779 33.333 0.00 0.00 0.00 1.94
404 459 8.537223 GGTCGTCTGTTTAATTTTTCCTTTTTC 58.463 33.333 0.00 0.00 0.00 2.29
405 460 9.297586 GTCGTCTGTTTAATTTTTCCTTTTTCT 57.702 29.630 0.00 0.00 0.00 2.52
406 461 9.296400 TCGTCTGTTTAATTTTTCCTTTTTCTG 57.704 29.630 0.00 0.00 0.00 3.02
421 476 8.532977 TCCTTTTTCTGTTTTCTTCAGTTTTG 57.467 30.769 0.00 0.00 34.86 2.44
461 522 6.074729 GGTTTTTATTCGTTTTCTCCGGTTTG 60.075 38.462 0.00 0.00 0.00 2.93
462 523 5.754543 TTTATTCGTTTTCTCCGGTTTGT 57.245 34.783 0.00 0.00 0.00 2.83
465 526 3.408288 TCGTTTTCTCCGGTTTGTTTG 57.592 42.857 0.00 0.00 0.00 2.93
467 528 2.097791 CGTTTTCTCCGGTTTGTTTGGA 59.902 45.455 0.00 0.00 0.00 3.53
472 534 3.793797 CTCCGGTTTGTTTGGAGTTTT 57.206 42.857 0.00 0.00 43.48 2.43
480 542 6.958752 CGGTTTGTTTGGAGTTTTCATTTTTC 59.041 34.615 0.00 0.00 0.00 2.29
508 570 6.940739 TGGGTTTCTTTGTTTTCTTTCATCA 58.059 32.000 0.00 0.00 0.00 3.07
513 575 9.958285 GTTTCTTTGTTTTCTTTCATCAGTTTC 57.042 29.630 0.00 0.00 0.00 2.78
516 578 8.477256 TCTTTGTTTTCTTTCATCAGTTTCCAT 58.523 29.630 0.00 0.00 0.00 3.41
518 580 7.345422 TGTTTTCTTTCATCAGTTTCCATCA 57.655 32.000 0.00 0.00 0.00 3.07
592 657 8.888716 TGTCTACATTTTTCATACGCATTGTAT 58.111 29.630 0.00 0.00 44.73 2.29
812 901 5.401033 TTTTTGAATGCACGTTGGAAATG 57.599 34.783 0.00 0.00 39.23 2.32
887 979 0.179094 TACGCACGGCCCATAAGAAG 60.179 55.000 0.00 0.00 0.00 2.85
888 980 2.180204 CGCACGGCCCATAAGAAGG 61.180 63.158 0.00 0.00 0.00 3.46
911 1019 1.944709 CCAAGCATTCATGATCTGCGA 59.055 47.619 19.37 0.00 40.78 5.10
922 1030 6.549912 TCATGATCTGCGAAATAATTGGAG 57.450 37.500 0.00 0.00 0.00 3.86
925 1033 4.816385 TGATCTGCGAAATAATTGGAGTCC 59.184 41.667 0.73 0.73 0.00 3.85
930 1038 3.242870 GCGAAATAATTGGAGTCCAGCAG 60.243 47.826 12.67 1.12 33.81 4.24
987 1129 0.553333 CCATTTCCCTCCTTCCCCTC 59.447 60.000 0.00 0.00 0.00 4.30
1024 1176 4.709397 TCCACAATTTCCATACCAATCCAC 59.291 41.667 0.00 0.00 0.00 4.02
1025 1177 4.465660 CCACAATTTCCATACCAATCCACA 59.534 41.667 0.00 0.00 0.00 4.17
1026 1178 5.046735 CCACAATTTCCATACCAATCCACAA 60.047 40.000 0.00 0.00 0.00 3.33
1027 1179 5.868801 CACAATTTCCATACCAATCCACAAC 59.131 40.000 0.00 0.00 0.00 3.32
1028 1180 5.779771 ACAATTTCCATACCAATCCACAACT 59.220 36.000 0.00 0.00 0.00 3.16
1029 1181 6.071391 ACAATTTCCATACCAATCCACAACTC 60.071 38.462 0.00 0.00 0.00 3.01
1030 1182 4.927267 TTCCATACCAATCCACAACTCT 57.073 40.909 0.00 0.00 0.00 3.24
1031 1183 4.487714 TCCATACCAATCCACAACTCTC 57.512 45.455 0.00 0.00 0.00 3.20
1032 1184 3.199946 TCCATACCAATCCACAACTCTCC 59.800 47.826 0.00 0.00 0.00 3.71
1033 1185 3.054434 CCATACCAATCCACAACTCTCCA 60.054 47.826 0.00 0.00 0.00 3.86
1172 1324 1.301293 CAGGTTGCTCCTCCTTCCC 59.699 63.158 0.00 0.00 46.24 3.97
1210 1362 0.250124 TTGAAACCCGCGAGTGTCAT 60.250 50.000 14.82 0.00 33.98 3.06
1269 1421 1.557651 GTAGTAAGCACTGTAGCGCC 58.442 55.000 2.29 0.00 40.15 6.53
1300 1452 1.918293 AGGTCAGGAATGCGGTGGA 60.918 57.895 0.00 0.00 0.00 4.02
1353 1514 0.036164 TCACGGCACTACCTTTGCAT 59.964 50.000 0.00 0.00 42.12 3.96
1370 1531 1.720852 GCATTTAGGTTGCTGTTTGCG 59.279 47.619 0.00 0.00 46.63 4.85
1393 1554 2.474816 GAGCCAGCCTATAGACAAACG 58.525 52.381 0.00 0.00 0.00 3.60
1415 1576 4.201724 CGAAGACTGAATCGGATTTGGAAC 60.202 45.833 4.47 0.00 35.49 3.62
1469 1630 9.904198 TGGATATGTAATTGAGAGTCATTTCAA 57.096 29.630 0.00 0.00 37.68 2.69
1471 1632 9.855361 GATATGTAATTGAGAGTCATTTCAACG 57.145 33.333 0.00 0.00 36.26 4.10
1482 1643 4.041049 GTCATTTCAACGTGCATTTCACA 58.959 39.130 0.00 0.00 45.92 3.58
1610 1786 6.319048 AGATATCAGGAAACCATTGACAGT 57.681 37.500 5.32 0.00 0.00 3.55
1799 1975 3.443681 CCGGAATTAGTTGGCACTCAAAT 59.556 43.478 0.00 0.00 37.08 2.32
1934 2229 3.827876 ACAATGTGACAAGGCATCATCAA 59.172 39.130 0.00 0.00 0.00 2.57
2071 2366 1.270550 CAATGTTGGGCAAGGTCTCAC 59.729 52.381 0.00 0.00 0.00 3.51
2572 2867 7.286316 ACAGGATTGAGGTTTGATGATTATTCC 59.714 37.037 0.00 0.00 0.00 3.01
2573 2868 6.779539 AGGATTGAGGTTTGATGATTATTCCC 59.220 38.462 0.00 0.00 0.00 3.97
2574 2869 6.294176 GGATTGAGGTTTGATGATTATTCCCG 60.294 42.308 0.00 0.00 0.00 5.14
2575 2870 4.460263 TGAGGTTTGATGATTATTCCCGG 58.540 43.478 0.00 0.00 0.00 5.73
2576 2871 4.165180 TGAGGTTTGATGATTATTCCCGGA 59.835 41.667 0.73 0.00 0.00 5.14
2577 2872 5.124036 AGGTTTGATGATTATTCCCGGAA 57.876 39.130 0.73 1.31 0.00 4.30
2578 2873 5.515106 AGGTTTGATGATTATTCCCGGAAA 58.485 37.500 0.73 0.00 0.00 3.13
2579 2874 6.136155 AGGTTTGATGATTATTCCCGGAAAT 58.864 36.000 0.73 0.00 0.00 2.17
2580 2875 6.265422 AGGTTTGATGATTATTCCCGGAAATC 59.735 38.462 0.73 7.41 0.00 2.17
2581 2876 6.447162 GTTTGATGATTATTCCCGGAAATCC 58.553 40.000 0.73 0.00 0.00 3.01
2582 2877 4.662278 TGATGATTATTCCCGGAAATCCC 58.338 43.478 0.73 2.85 0.00 3.85
2583 2878 4.353788 TGATGATTATTCCCGGAAATCCCT 59.646 41.667 0.73 0.00 0.00 4.20
2584 2879 4.806952 TGATTATTCCCGGAAATCCCTT 57.193 40.909 0.73 0.00 0.00 3.95
2585 2880 5.137412 TGATTATTCCCGGAAATCCCTTT 57.863 39.130 0.73 0.00 0.00 3.11
2586 2881 5.524535 TGATTATTCCCGGAAATCCCTTTT 58.475 37.500 0.73 0.00 0.00 2.27
2587 2882 5.362430 TGATTATTCCCGGAAATCCCTTTTG 59.638 40.000 0.73 0.00 0.00 2.44
2588 2883 1.931635 TTCCCGGAAATCCCTTTTGG 58.068 50.000 0.73 0.00 39.97 3.28
2596 2891 3.077907 TCCCTTTTGGAGCTCGGG 58.922 61.111 15.53 15.53 44.07 5.14
2597 2892 2.751837 CCCTTTTGGAGCTCGGGC 60.752 66.667 10.30 0.00 44.07 6.13
2607 2902 4.154347 GCTCGGGCTCCAGTGAGG 62.154 72.222 0.00 0.00 39.14 3.86
2613 2908 4.154347 GCTCCAGTGAGGCCTCCG 62.154 72.222 29.95 17.56 39.14 4.63
2614 2909 3.465403 CTCCAGTGAGGCCTCCGG 61.465 72.222 29.95 25.17 37.29 5.14
2615 2910 3.965026 CTCCAGTGAGGCCTCCGGA 62.965 68.421 29.95 27.57 37.29 5.14
2616 2911 2.765807 CCAGTGAGGCCTCCGGAT 60.766 66.667 29.95 10.20 0.00 4.18
2617 2912 2.370445 CCAGTGAGGCCTCCGGATT 61.370 63.158 29.95 5.47 0.00 3.01
2618 2913 1.144936 CAGTGAGGCCTCCGGATTC 59.855 63.158 29.95 12.61 0.00 2.52
2619 2914 1.306141 AGTGAGGCCTCCGGATTCA 60.306 57.895 29.95 7.46 0.00 2.57
2620 2915 0.909610 AGTGAGGCCTCCGGATTCAA 60.910 55.000 29.95 5.60 0.00 2.69
2621 2916 0.035439 GTGAGGCCTCCGGATTCAAA 60.035 55.000 29.95 4.78 0.00 2.69
2622 2917 0.918983 TGAGGCCTCCGGATTCAAAT 59.081 50.000 29.95 0.00 0.00 2.32
2623 2918 1.284785 TGAGGCCTCCGGATTCAAATT 59.715 47.619 29.95 0.00 0.00 1.82
2624 2919 2.291540 TGAGGCCTCCGGATTCAAATTT 60.292 45.455 29.95 0.00 0.00 1.82
2625 2920 2.359214 GAGGCCTCCGGATTCAAATTTC 59.641 50.000 23.19 0.00 0.00 2.17
2626 2921 2.099405 GGCCTCCGGATTCAAATTTCA 58.901 47.619 3.57 0.00 0.00 2.69
2627 2922 2.495669 GGCCTCCGGATTCAAATTTCAA 59.504 45.455 3.57 0.00 0.00 2.69
2628 2923 3.056179 GGCCTCCGGATTCAAATTTCAAA 60.056 43.478 3.57 0.00 0.00 2.69
2629 2924 4.383010 GGCCTCCGGATTCAAATTTCAAAT 60.383 41.667 3.57 0.00 0.00 2.32
2630 2925 5.178061 GCCTCCGGATTCAAATTTCAAATT 58.822 37.500 3.57 0.00 0.00 1.82
2631 2926 5.643348 GCCTCCGGATTCAAATTTCAAATTT 59.357 36.000 3.57 1.98 0.00 1.82
2632 2927 6.183360 GCCTCCGGATTCAAATTTCAAATTTC 60.183 38.462 3.57 0.00 0.00 2.17
2633 2928 6.873076 CCTCCGGATTCAAATTTCAAATTTCA 59.127 34.615 3.57 0.00 0.00 2.69
2634 2929 7.550196 CCTCCGGATTCAAATTTCAAATTTCAT 59.450 33.333 3.57 1.34 0.00 2.57
2635 2930 8.845413 TCCGGATTCAAATTTCAAATTTCATT 57.155 26.923 0.00 0.00 0.00 2.57
2636 2931 8.719648 TCCGGATTCAAATTTCAAATTTCATTG 58.280 29.630 0.00 0.00 0.00 2.82
2637 2932 8.719648 CCGGATTCAAATTTCAAATTTCATTGA 58.280 29.630 5.04 0.00 37.53 2.57
2657 2952 9.834628 TCATTGAAATTCGTATTTTTACACCTC 57.165 29.630 1.33 0.00 34.16 3.85
2658 2953 9.619316 CATTGAAATTCGTATTTTTACACCTCA 57.381 29.630 1.33 0.00 34.16 3.86
2710 3005 9.964354 ATATATGAAGGCATAATACACATGTGT 57.036 29.630 32.47 32.47 42.27 3.72
2711 3006 6.381481 ATGAAGGCATAATACACATGTGTG 57.619 37.500 36.01 22.21 41.45 3.82
2712 3007 5.887598 ATGAAGGCATAATACACATGTGTGT 59.112 36.000 36.01 28.95 46.15 3.72
2713 3008 7.053498 ATGAAGGCATAATACACATGTGTGTA 58.947 34.615 36.01 27.30 46.95 2.90
2714 3009 7.555914 ATGAAGGCATAATACACATGTGTGTAA 59.444 33.333 36.01 22.45 46.53 2.41
2726 3021 7.984002 CACATGTGTGTAAATTTTCAGTTCA 57.016 32.000 18.03 0.00 40.96 3.18
2727 3022 8.404889 CACATGTGTGTAAATTTTCAGTTCAA 57.595 30.769 18.03 0.00 40.96 2.69
2728 3023 8.867935 CACATGTGTGTAAATTTTCAGTTCAAA 58.132 29.630 18.03 0.00 40.96 2.69
2729 3024 9.429359 ACATGTGTGTAAATTTTCAGTTCAAAA 57.571 25.926 0.00 0.00 36.63 2.44
2747 3042 6.855763 TCAAAATACATTGAAATGAGGGCT 57.144 33.333 9.94 0.00 39.67 5.19
2748 3043 6.632909 TCAAAATACATTGAAATGAGGGCTG 58.367 36.000 9.94 2.52 39.67 4.85
2749 3044 6.211184 TCAAAATACATTGAAATGAGGGCTGT 59.789 34.615 9.94 0.00 39.67 4.40
2750 3045 5.587388 AATACATTGAAATGAGGGCTGTG 57.413 39.130 9.94 0.00 39.67 3.66
2751 3046 1.547372 ACATTGAAATGAGGGCTGTGC 59.453 47.619 9.94 0.00 39.67 4.57
2752 3047 1.546923 CATTGAAATGAGGGCTGTGCA 59.453 47.619 0.00 0.00 38.70 4.57
2753 3048 1.702182 TTGAAATGAGGGCTGTGCAA 58.298 45.000 0.00 0.00 0.00 4.08
2754 3049 1.702182 TGAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
2755 3050 2.037901 TGAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
2756 3051 2.433604 TGAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
2774 3069 2.683211 AAAGACAAATCTGGGGCTGT 57.317 45.000 0.00 0.00 34.48 4.40
2775 3070 2.683211 AAGACAAATCTGGGGCTGTT 57.317 45.000 0.00 0.00 34.48 3.16
2776 3071 2.683211 AGACAAATCTGGGGCTGTTT 57.317 45.000 0.00 0.00 32.29 2.83
2777 3072 3.806949 AGACAAATCTGGGGCTGTTTA 57.193 42.857 0.00 0.00 32.29 2.01
2778 3073 4.112634 AGACAAATCTGGGGCTGTTTAA 57.887 40.909 0.00 0.00 32.29 1.52
2779 3074 3.826729 AGACAAATCTGGGGCTGTTTAAC 59.173 43.478 0.00 0.00 32.29 2.01
2780 3075 3.571590 ACAAATCTGGGGCTGTTTAACA 58.428 40.909 0.00 0.00 0.00 2.41
2781 3076 3.320826 ACAAATCTGGGGCTGTTTAACAC 59.679 43.478 0.00 0.00 0.00 3.32
2782 3077 2.969821 ATCTGGGGCTGTTTAACACA 57.030 45.000 0.00 0.00 0.00 3.72
2783 3078 2.969821 TCTGGGGCTGTTTAACACAT 57.030 45.000 0.00 0.00 33.76 3.21
2784 3079 2.513753 TCTGGGGCTGTTTAACACATG 58.486 47.619 0.00 0.00 33.76 3.21
2785 3080 2.107378 TCTGGGGCTGTTTAACACATGA 59.893 45.455 0.00 0.00 33.76 3.07
2786 3081 3.091545 CTGGGGCTGTTTAACACATGAT 58.908 45.455 0.00 0.00 33.76 2.45
2787 3082 4.018870 TCTGGGGCTGTTTAACACATGATA 60.019 41.667 0.00 0.00 33.76 2.15
2788 3083 4.013728 TGGGGCTGTTTAACACATGATAC 58.986 43.478 0.00 0.00 33.76 2.24
2789 3084 4.263727 TGGGGCTGTTTAACACATGATACT 60.264 41.667 0.00 0.00 33.76 2.12
2790 3085 5.045505 TGGGGCTGTTTAACACATGATACTA 60.046 40.000 0.00 0.00 33.76 1.82
2791 3086 6.062095 GGGGCTGTTTAACACATGATACTAT 58.938 40.000 0.00 0.00 33.76 2.12
2792 3087 6.204882 GGGGCTGTTTAACACATGATACTATC 59.795 42.308 0.00 0.00 33.76 2.08
2793 3088 6.204882 GGGCTGTTTAACACATGATACTATCC 59.795 42.308 0.00 0.00 33.76 2.59
2794 3089 6.765989 GGCTGTTTAACACATGATACTATCCA 59.234 38.462 0.00 0.00 33.76 3.41
2795 3090 7.445402 GGCTGTTTAACACATGATACTATCCAT 59.555 37.037 0.00 0.00 33.76 3.41
2796 3091 8.499162 GCTGTTTAACACATGATACTATCCATC 58.501 37.037 0.00 0.00 33.76 3.51
2797 3092 8.902540 TGTTTAACACATGATACTATCCATCC 57.097 34.615 0.00 0.00 0.00 3.51
2798 3093 8.713971 TGTTTAACACATGATACTATCCATCCT 58.286 33.333 0.00 0.00 0.00 3.24
2799 3094 9.209175 GTTTAACACATGATACTATCCATCCTC 57.791 37.037 0.00 0.00 0.00 3.71
2800 3095 6.365970 AACACATGATACTATCCATCCTCC 57.634 41.667 0.00 0.00 0.00 4.30
2801 3096 5.659503 ACACATGATACTATCCATCCTCCT 58.340 41.667 0.00 0.00 0.00 3.69
2802 3097 6.805150 ACACATGATACTATCCATCCTCCTA 58.195 40.000 0.00 0.00 0.00 2.94
2803 3098 6.894654 ACACATGATACTATCCATCCTCCTAG 59.105 42.308 0.00 0.00 0.00 3.02
2804 3099 6.323482 CACATGATACTATCCATCCTCCTAGG 59.677 46.154 0.82 0.82 36.46 3.02
2805 3100 4.873010 TGATACTATCCATCCTCCTAGGC 58.127 47.826 2.96 0.00 34.61 3.93
2806 3101 2.632763 ACTATCCATCCTCCTAGGCC 57.367 55.000 2.96 0.00 34.61 5.19
2807 3102 1.795786 ACTATCCATCCTCCTAGGCCA 59.204 52.381 5.01 0.00 34.61 5.36
2808 3103 2.388563 ACTATCCATCCTCCTAGGCCAT 59.611 50.000 5.01 0.00 34.61 4.40
2809 3104 1.666365 ATCCATCCTCCTAGGCCATG 58.334 55.000 5.01 5.72 34.61 3.66
2810 3105 0.474466 TCCATCCTCCTAGGCCATGG 60.474 60.000 20.11 20.11 39.75 3.66
2811 3106 0.474466 CCATCCTCCTAGGCCATGGA 60.474 60.000 18.40 16.92 40.45 3.41
2812 3107 1.666365 CATCCTCCTAGGCCATGGAT 58.334 55.000 18.40 11.17 37.96 3.41
2813 3108 1.991070 CATCCTCCTAGGCCATGGATT 59.009 52.381 18.40 4.61 35.57 3.01
2814 3109 2.212752 TCCTCCTAGGCCATGGATTT 57.787 50.000 18.40 1.71 34.61 2.17
2815 3110 1.776667 TCCTCCTAGGCCATGGATTTG 59.223 52.381 18.40 3.09 34.61 2.32
2816 3111 1.496429 CCTCCTAGGCCATGGATTTGT 59.504 52.381 18.40 0.00 0.00 2.83
2817 3112 2.487986 CCTCCTAGGCCATGGATTTGTC 60.488 54.545 18.40 0.00 0.00 3.18
2818 3113 2.441001 CTCCTAGGCCATGGATTTGTCT 59.559 50.000 18.40 4.77 0.00 3.41
2819 3114 2.852449 TCCTAGGCCATGGATTTGTCTT 59.148 45.455 18.40 0.00 0.00 3.01
2820 3115 3.269381 TCCTAGGCCATGGATTTGTCTTT 59.731 43.478 18.40 0.00 0.00 2.52
2821 3116 4.026052 CCTAGGCCATGGATTTGTCTTTT 58.974 43.478 18.40 0.00 0.00 2.27
2822 3117 4.467438 CCTAGGCCATGGATTTGTCTTTTT 59.533 41.667 18.40 0.00 0.00 1.94
2840 3135 4.902443 TTTTTGTACAGGTCGCAATTCA 57.098 36.364 0.00 0.00 0.00 2.57
2841 3136 4.902443 TTTTGTACAGGTCGCAATTCAA 57.098 36.364 0.00 0.00 0.00 2.69
2842 3137 4.481930 TTTGTACAGGTCGCAATTCAAG 57.518 40.909 0.00 0.00 0.00 3.02
2843 3138 2.422597 TGTACAGGTCGCAATTCAAGG 58.577 47.619 0.00 0.00 0.00 3.61
2844 3139 2.224426 TGTACAGGTCGCAATTCAAGGT 60.224 45.455 0.00 0.00 0.00 3.50
2845 3140 2.851263 ACAGGTCGCAATTCAAGGTA 57.149 45.000 0.00 0.00 0.00 3.08
2846 3141 3.350219 ACAGGTCGCAATTCAAGGTAT 57.650 42.857 0.00 0.00 0.00 2.73
2847 3142 3.686016 ACAGGTCGCAATTCAAGGTATT 58.314 40.909 0.00 0.00 0.00 1.89
2848 3143 4.079253 ACAGGTCGCAATTCAAGGTATTT 58.921 39.130 0.00 0.00 0.00 1.40
2849 3144 4.156008 ACAGGTCGCAATTCAAGGTATTTC 59.844 41.667 0.00 0.00 0.00 2.17
2850 3145 4.155826 CAGGTCGCAATTCAAGGTATTTCA 59.844 41.667 0.00 0.00 0.00 2.69
2851 3146 4.949856 AGGTCGCAATTCAAGGTATTTCAT 59.050 37.500 0.00 0.00 0.00 2.57
2852 3147 5.066505 AGGTCGCAATTCAAGGTATTTCATC 59.933 40.000 0.00 0.00 0.00 2.92
2853 3148 5.163663 GGTCGCAATTCAAGGTATTTCATCA 60.164 40.000 0.00 0.00 0.00 3.07
2854 3149 6.460123 GGTCGCAATTCAAGGTATTTCATCAT 60.460 38.462 0.00 0.00 0.00 2.45
2855 3150 6.415867 GTCGCAATTCAAGGTATTTCATCATG 59.584 38.462 0.00 0.00 0.00 3.07
2856 3151 6.318396 TCGCAATTCAAGGTATTTCATCATGA 59.682 34.615 0.00 0.00 0.00 3.07
2857 3152 6.974048 CGCAATTCAAGGTATTTCATCATGAA 59.026 34.615 0.00 0.00 34.03 2.57
2858 3153 7.650504 CGCAATTCAAGGTATTTCATCATGAAT 59.349 33.333 0.00 0.00 36.11 2.57
2859 3154 9.321562 GCAATTCAAGGTATTTCATCATGAATT 57.678 29.630 0.00 0.16 43.15 2.17
2894 3189 6.327154 TGTGAGTTACATCCTTACATACACG 58.673 40.000 0.00 0.00 33.42 4.49
2895 3190 5.231568 GTGAGTTACATCCTTACATACACGC 59.768 44.000 0.00 0.00 0.00 5.34
2896 3191 5.105675 TGAGTTACATCCTTACATACACGCA 60.106 40.000 0.00 0.00 0.00 5.24
2897 3192 5.914033 AGTTACATCCTTACATACACGCAT 58.086 37.500 0.00 0.00 0.00 4.73
2898 3193 7.046292 AGTTACATCCTTACATACACGCATA 57.954 36.000 0.00 0.00 0.00 3.14
2899 3194 7.667557 AGTTACATCCTTACATACACGCATAT 58.332 34.615 0.00 0.00 0.00 1.78
2900 3195 8.148351 AGTTACATCCTTACATACACGCATATT 58.852 33.333 0.00 0.00 0.00 1.28
2901 3196 8.770828 GTTACATCCTTACATACACGCATATTT 58.229 33.333 0.00 0.00 0.00 1.40
2902 3197 7.801716 ACATCCTTACATACACGCATATTTT 57.198 32.000 0.00 0.00 0.00 1.82
2903 3198 8.220755 ACATCCTTACATACACGCATATTTTT 57.779 30.769 0.00 0.00 0.00 1.94
2963 3258 8.389779 TGAATTTTTCAAAAATAAAGGCCTCC 57.610 30.769 5.23 0.00 36.59 4.30
2964 3259 7.995488 TGAATTTTTCAAAAATAAAGGCCTCCA 59.005 29.630 5.23 0.00 36.59 3.86
2965 3260 8.938801 AATTTTTCAAAAATAAAGGCCTCCAT 57.061 26.923 5.23 0.00 0.00 3.41
2966 3261 7.742556 TTTTTCAAAAATAAAGGCCTCCATG 57.257 32.000 5.23 0.00 0.00 3.66
2967 3262 5.419239 TTCAAAAATAAAGGCCTCCATGG 57.581 39.130 5.23 4.97 39.35 3.66
2968 3263 4.682563 TCAAAAATAAAGGCCTCCATGGA 58.317 39.130 15.27 15.27 38.35 3.41
2969 3264 4.711355 TCAAAAATAAAGGCCTCCATGGAG 59.289 41.667 31.69 31.69 41.63 3.86
2970 3265 2.371658 AATAAAGGCCTCCATGGAGC 57.628 50.000 32.97 26.44 40.69 4.70
2971 3266 1.527457 ATAAAGGCCTCCATGGAGCT 58.473 50.000 32.97 23.24 40.69 4.09
2972 3267 0.839946 TAAAGGCCTCCATGGAGCTC 59.160 55.000 32.97 25.21 40.69 4.09
2973 3268 2.262774 AAAGGCCTCCATGGAGCTCG 62.263 60.000 32.97 21.57 40.69 5.03
2974 3269 4.247380 GGCCTCCATGGAGCTCGG 62.247 72.222 32.97 22.55 40.69 4.63
2975 3270 4.925861 GCCTCCATGGAGCTCGGC 62.926 72.222 32.97 27.64 40.69 5.54
2976 3271 4.247380 CCTCCATGGAGCTCGGCC 62.247 72.222 32.97 0.00 40.69 6.13
2977 3272 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
2978 3273 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
2984 3279 3.579685 GAGCTCGGCCTCCAAAAC 58.420 61.111 0.00 0.00 0.00 2.43
2985 3280 2.358737 AGCTCGGCCTCCAAAACG 60.359 61.111 0.00 0.00 0.00 3.60
2986 3281 4.103103 GCTCGGCCTCCAAAACGC 62.103 66.667 0.00 0.00 0.00 4.84
2987 3282 3.431725 CTCGGCCTCCAAAACGCC 61.432 66.667 0.00 0.00 39.41 5.68
2988 3283 3.901797 CTCGGCCTCCAAAACGCCT 62.902 63.158 0.00 0.00 40.70 5.52
2989 3284 2.983592 CGGCCTCCAAAACGCCTT 60.984 61.111 0.00 0.00 40.70 4.35
2990 3285 2.561037 CGGCCTCCAAAACGCCTTT 61.561 57.895 0.00 0.00 40.70 3.11
2991 3286 1.289066 GGCCTCCAAAACGCCTTTC 59.711 57.895 0.00 0.00 39.70 2.62
2992 3287 1.179174 GGCCTCCAAAACGCCTTTCT 61.179 55.000 0.00 0.00 39.70 2.52
2993 3288 0.241213 GCCTCCAAAACGCCTTTCTC 59.759 55.000 0.00 0.00 0.00 2.87
2994 3289 0.517316 CCTCCAAAACGCCTTTCTCG 59.483 55.000 0.00 0.00 0.00 4.04
2995 3290 1.508632 CTCCAAAACGCCTTTCTCGA 58.491 50.000 0.00 0.00 0.00 4.04
2996 3291 2.076863 CTCCAAAACGCCTTTCTCGAT 58.923 47.619 0.00 0.00 0.00 3.59
2997 3292 2.484264 CTCCAAAACGCCTTTCTCGATT 59.516 45.455 0.00 0.00 0.00 3.34
2998 3293 3.666274 TCCAAAACGCCTTTCTCGATTA 58.334 40.909 0.00 0.00 0.00 1.75
2999 3294 4.258543 TCCAAAACGCCTTTCTCGATTAT 58.741 39.130 0.00 0.00 0.00 1.28
3000 3295 4.698304 TCCAAAACGCCTTTCTCGATTATT 59.302 37.500 0.00 0.00 0.00 1.40
3001 3296 5.028375 CCAAAACGCCTTTCTCGATTATTC 58.972 41.667 0.00 0.00 0.00 1.75
3002 3297 4.877323 AAACGCCTTTCTCGATTATTCC 57.123 40.909 0.00 0.00 0.00 3.01
3003 3298 3.821421 ACGCCTTTCTCGATTATTCCT 57.179 42.857 0.00 0.00 0.00 3.36
3004 3299 4.138487 ACGCCTTTCTCGATTATTCCTT 57.862 40.909 0.00 0.00 0.00 3.36
3159 3456 9.780186 ATTTCAGTAGGCTAATAGTTACCATTC 57.220 33.333 0.00 0.00 0.00 2.67
3212 3509 7.894708 TGTGTGGTCAATACAATTCATTGATT 58.105 30.769 12.76 0.27 42.63 2.57
3916 4213 1.546323 CCAAGTGGCACCTTCACTGAT 60.546 52.381 15.27 0.00 43.82 2.90
4430 4734 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
4450 4754 6.255887 CGGAGTAAAATGAGTGAATCTACACC 59.744 42.308 0.00 0.00 41.12 4.16
4550 4854 6.789959 AGGGAGTATATCTGAAGCCTTTATGT 59.210 38.462 0.00 0.00 0.00 2.29
4613 4918 6.586463 ACTTCTGTTGTAATCGTGATGTACAG 59.414 38.462 0.33 0.00 34.55 2.74
4715 5020 8.090250 TGTCTGTTACACATAAATTGGTGTAC 57.910 34.615 14.17 11.16 46.75 2.90
5247 5682 3.409026 AGCAGAAGGAACAGGTACTTG 57.591 47.619 2.98 2.98 34.60 3.16
5248 5683 2.039084 AGCAGAAGGAACAGGTACTTGG 59.961 50.000 10.04 0.00 34.60 3.61
5279 5714 0.876342 GGTCCGGCTTATCGCTTCAG 60.876 60.000 0.00 0.00 39.13 3.02
5282 5717 0.460284 CCGGCTTATCGCTTCAGTGT 60.460 55.000 0.00 0.00 39.13 3.55
5325 5760 2.281762 GGCTAATTCGACGCAACTAGTG 59.718 50.000 0.00 0.00 0.00 2.74
5368 5803 7.624360 TGCCAAAGGAGTTACTGTATTATTG 57.376 36.000 0.00 0.00 0.00 1.90
5369 5804 7.398829 TGCCAAAGGAGTTACTGTATTATTGA 58.601 34.615 0.00 0.00 0.00 2.57
5370 5805 8.052748 TGCCAAAGGAGTTACTGTATTATTGAT 58.947 33.333 0.00 0.00 0.00 2.57
5383 5818 9.570468 ACTGTATTATTGATCATCATTGCTTCT 57.430 29.630 0.00 0.00 0.00 2.85
5452 5895 2.092699 AGCTGAGCAAGGTTTAGATCCC 60.093 50.000 7.39 0.00 30.45 3.85
5489 5938 1.291877 ACTGGTGAGTCGCATTTCGC 61.292 55.000 5.95 0.00 38.27 4.70
5526 5975 3.316029 TGGCTGTGTTGAAGAAACTGATG 59.684 43.478 0.00 0.00 39.70 3.07
5548 5997 4.340666 TGTATCAGCAACCAACACATTTGT 59.659 37.500 0.00 0.00 37.67 2.83
5566 6015 4.447138 TTGTTGGGTTATCACAGAACCT 57.553 40.909 4.66 0.00 44.92 3.50
5586 6035 0.394938 TGCTCCTAAAACGGCAGTCA 59.605 50.000 0.00 0.00 0.00 3.41
5593 6042 4.155826 TCCTAAAACGGCAGTCATTTCATG 59.844 41.667 0.00 0.00 0.00 3.07
5618 6067 4.661993 TTAGCAGCTAACACGTGAATTG 57.338 40.909 25.01 12.34 0.00 2.32
5779 6229 4.266714 TCCCTTTTGTAATTAGGCCTTCG 58.733 43.478 12.58 0.00 0.00 3.79
5817 6267 5.329035 ACTGCCATTGTCAATATTTCCAC 57.671 39.130 0.00 0.00 0.00 4.02
5858 6308 7.333528 TGTGCACTCTAAAAGTTCTTTTCAT 57.666 32.000 19.41 0.00 35.45 2.57
5875 6325 8.592105 TCTTTTCATGTTTCCTTTGCTAATTG 57.408 30.769 0.00 0.00 0.00 2.32
5889 6339 2.107552 GCTAATTGTATACCCTGGGCCA 59.892 50.000 14.08 5.85 0.00 5.36
5932 6382 5.056480 GCTACAAATTGGGCAAGTTCTTTT 58.944 37.500 0.00 0.00 0.00 2.27
5984 6435 4.683832 ACTGTATCTTTGACACGATAGGC 58.316 43.478 0.00 0.00 43.77 3.93
6022 6474 1.776667 CCAGTGTATCATGGGTCCCAT 59.223 52.381 18.56 18.56 46.37 4.00
6052 6512 1.293179 CACACCGATGACTGGCAGA 59.707 57.895 23.66 0.00 0.00 4.26
6294 6765 5.641783 TTTTGAATGCTGTGCTAATGCTA 57.358 34.783 0.00 0.00 40.48 3.49
6429 6900 5.389778 GTTGTTTTCCTTTTTGCAAGGTTG 58.610 37.500 0.00 0.00 38.55 3.77
6504 6975 5.479027 TGCTAATGTGTTGGAGTACTACTGA 59.521 40.000 6.66 0.00 0.00 3.41
6506 6977 6.310711 GCTAATGTGTTGGAGTACTACTGAAC 59.689 42.308 6.66 4.04 0.00 3.18
6507 6978 5.801531 ATGTGTTGGAGTACTACTGAACA 57.198 39.130 6.66 6.78 29.54 3.18
6508 6979 5.801531 TGTGTTGGAGTACTACTGAACAT 57.198 39.130 12.71 0.00 32.81 2.71
6509 6980 5.779922 TGTGTTGGAGTACTACTGAACATC 58.220 41.667 12.71 8.32 32.81 3.06
6510 6981 5.538813 TGTGTTGGAGTACTACTGAACATCT 59.461 40.000 12.71 0.00 32.81 2.90
6511 6982 6.041637 TGTGTTGGAGTACTACTGAACATCTT 59.958 38.462 12.71 0.00 32.81 2.40
6512 6983 6.929606 GTGTTGGAGTACTACTGAACATCTTT 59.070 38.462 12.71 0.00 32.81 2.52
6521 6992 9.291664 GTACTACTGAACATCTTTTAGTAGCAG 57.708 37.037 13.16 0.00 42.72 4.24
6527 6998 5.869753 ACATCTTTTAGTAGCAGCACTTG 57.130 39.130 0.00 0.00 0.00 3.16
6531 7002 5.551233 TCTTTTAGTAGCAGCACTTGTGAT 58.449 37.500 4.79 0.00 0.00 3.06
6536 7007 4.753233 AGTAGCAGCACTTGTGATAAGAG 58.247 43.478 4.79 0.00 0.00 2.85
6540 7011 3.181512 GCAGCACTTGTGATAAGAGAAGC 60.182 47.826 4.79 0.00 0.00 3.86
6603 8106 5.647225 GTCAAAATCTCAGAGGCTTCAAGAT 59.353 40.000 7.63 7.63 32.57 2.40
6652 8160 0.546598 GGAACCGATCACCCAGGAAT 59.453 55.000 0.00 0.00 0.00 3.01
6653 8161 1.668419 GAACCGATCACCCAGGAATG 58.332 55.000 0.00 0.00 0.00 2.67
6654 8162 0.255890 AACCGATCACCCAGGAATGG 59.744 55.000 0.00 0.00 0.00 3.16
6677 8202 5.277154 GGGACCGACGAAAACAACATATATG 60.277 44.000 11.29 11.29 0.00 1.78
6838 8372 1.291132 GAAGGTAGCAAGTCGATGGC 58.709 55.000 0.00 0.00 0.00 4.40
6839 8373 0.107654 AAGGTAGCAAGTCGATGGCC 60.108 55.000 0.00 0.00 0.00 5.36
6840 8374 1.883084 GGTAGCAAGTCGATGGCCG 60.883 63.158 0.00 0.00 40.25 6.13
6841 8375 1.883084 GTAGCAAGTCGATGGCCGG 60.883 63.158 0.00 0.00 39.14 6.13
6842 8376 3.088941 TAGCAAGTCGATGGCCGGG 62.089 63.158 2.18 0.00 39.14 5.73
6844 8378 4.096003 CAAGTCGATGGCCGGGGT 62.096 66.667 2.18 0.00 39.14 4.95
6845 8379 4.096003 AAGTCGATGGCCGGGGTG 62.096 66.667 2.18 0.00 39.14 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 6.848451 TGTTTCTTCGTTCACTTTTTAGCTT 58.152 32.000 0.00 0.00 0.00 3.74
96 97 8.610248 TTTGGTTATCTATGTTTCTTCGTTCA 57.390 30.769 0.00 0.00 0.00 3.18
181 206 2.296792 GGCTGTTTTGCAATGGGTTTT 58.703 42.857 0.00 0.00 34.04 2.43
185 210 0.108207 TTGGGCTGTTTTGCAATGGG 59.892 50.000 0.00 0.00 34.04 4.00
241 266 0.826715 TCTGGCCTGTAGTGAGATGC 59.173 55.000 3.32 0.00 0.00 3.91
254 279 0.615850 GGTGGGAGCTATATCTGGCC 59.384 60.000 0.00 0.00 0.00 5.36
391 446 9.725019 ACTGAAGAAAACAGAAAAAGGAAAAAT 57.275 25.926 0.00 0.00 38.55 1.82
392 447 9.554395 AACTGAAGAAAACAGAAAAAGGAAAAA 57.446 25.926 0.00 0.00 38.55 1.94
393 448 9.554395 AAACTGAAGAAAACAGAAAAAGGAAAA 57.446 25.926 0.00 0.00 38.55 2.29
394 449 9.554395 AAAACTGAAGAAAACAGAAAAAGGAAA 57.446 25.926 0.00 0.00 38.55 3.13
395 450 8.987890 CAAAACTGAAGAAAACAGAAAAAGGAA 58.012 29.630 0.00 0.00 38.55 3.36
396 451 8.147704 ACAAAACTGAAGAAAACAGAAAAAGGA 58.852 29.630 0.00 0.00 38.55 3.36
397 452 8.310406 ACAAAACTGAAGAAAACAGAAAAAGG 57.690 30.769 0.00 0.00 38.55 3.11
461 522 7.387673 CCCATAGGAAAAATGAAAACTCCAAAC 59.612 37.037 0.00 0.00 33.47 2.93
462 523 7.071824 ACCCATAGGAAAAATGAAAACTCCAAA 59.928 33.333 0.00 0.00 36.73 3.28
465 526 6.605471 ACCCATAGGAAAAATGAAAACTCC 57.395 37.500 0.00 0.00 36.73 3.85
467 528 8.262601 AGAAACCCATAGGAAAAATGAAAACT 57.737 30.769 0.00 0.00 36.73 2.66
468 529 8.902540 AAGAAACCCATAGGAAAAATGAAAAC 57.097 30.769 0.00 0.00 36.73 2.43
472 534 7.610580 ACAAAGAAACCCATAGGAAAAATGA 57.389 32.000 0.00 0.00 36.73 2.57
480 542 7.496747 TGAAAGAAAACAAAGAAACCCATAGG 58.503 34.615 0.00 0.00 40.04 2.57
508 570 8.655935 AAAACCAGAGATAATTGATGGAAACT 57.344 30.769 0.00 0.00 34.99 2.66
837 926 9.745018 TTGAGAGATTCTTTTTCCATAGTTCAT 57.255 29.630 0.00 0.00 0.00 2.57
838 927 9.224267 CTTGAGAGATTCTTTTTCCATAGTTCA 57.776 33.333 0.00 0.00 0.00 3.18
839 928 9.225436 ACTTGAGAGATTCTTTTTCCATAGTTC 57.775 33.333 0.00 0.00 0.00 3.01
840 929 9.579932 AACTTGAGAGATTCTTTTTCCATAGTT 57.420 29.630 0.00 0.00 0.00 2.24
845 934 8.342634 CGTAAAACTTGAGAGATTCTTTTTCCA 58.657 33.333 0.00 0.00 0.00 3.53
846 935 7.323895 GCGTAAAACTTGAGAGATTCTTTTTCC 59.676 37.037 0.00 0.00 0.00 3.13
847 936 7.855904 TGCGTAAAACTTGAGAGATTCTTTTTC 59.144 33.333 0.00 0.00 0.00 2.29
853 945 4.434330 CCGTGCGTAAAACTTGAGAGATTC 60.434 45.833 0.00 0.00 0.00 2.52
887 979 2.029623 AGATCATGAATGCTTGGTGCC 58.970 47.619 0.00 0.00 42.00 5.01
888 980 2.798499 GCAGATCATGAATGCTTGGTGC 60.798 50.000 22.47 9.88 43.25 5.01
889 981 2.540973 CGCAGATCATGAATGCTTGGTG 60.541 50.000 25.17 11.86 37.81 4.17
890 982 1.674441 CGCAGATCATGAATGCTTGGT 59.326 47.619 25.17 0.00 37.81 3.67
892 984 3.685836 TTCGCAGATCATGAATGCTTG 57.314 42.857 25.17 15.45 37.81 4.01
893 985 4.913335 ATTTCGCAGATCATGAATGCTT 57.087 36.364 25.17 11.09 37.81 3.91
895 987 6.089016 CCAATTATTTCGCAGATCATGAATGC 59.911 38.462 20.73 20.73 35.04 3.56
898 990 6.543465 ACTCCAATTATTTCGCAGATCATGAA 59.457 34.615 0.00 0.00 35.04 2.57
911 1019 3.026694 GCCTGCTGGACTCCAATTATTT 58.973 45.455 14.77 0.00 30.80 1.40
987 1129 5.379706 AATTGTGGATAAGGAGAGGAAGG 57.620 43.478 0.00 0.00 0.00 3.46
1024 1176 0.390472 GAAGGCCGAGTGGAGAGTTG 60.390 60.000 0.00 0.00 37.49 3.16
1025 1177 1.545706 GGAAGGCCGAGTGGAGAGTT 61.546 60.000 0.00 0.00 37.49 3.01
1026 1178 1.985116 GGAAGGCCGAGTGGAGAGT 60.985 63.158 0.00 0.00 37.49 3.24
1027 1179 2.726351 GGGAAGGCCGAGTGGAGAG 61.726 68.421 0.00 0.00 37.49 3.20
1028 1180 2.683933 GGGAAGGCCGAGTGGAGA 60.684 66.667 0.00 0.00 37.49 3.71
1029 1181 3.787001 GGGGAAGGCCGAGTGGAG 61.787 72.222 0.00 0.00 37.49 3.86
1030 1182 4.332543 AGGGGAAGGCCGAGTGGA 62.333 66.667 0.00 0.00 37.49 4.02
1031 1183 3.787001 GAGGGGAAGGCCGAGTGG 61.787 72.222 0.00 0.00 38.77 4.00
1032 1184 4.148825 CGAGGGGAAGGCCGAGTG 62.149 72.222 0.00 0.00 33.83 3.51
1210 1362 7.041167 CCATGAATGATAAAAGCAGAATACGGA 60.041 37.037 0.00 0.00 0.00 4.69
1269 1421 0.320771 CTGACCTGGGGTTCGTCTTG 60.321 60.000 0.00 0.00 35.25 3.02
1300 1452 0.035176 AAAGCACCGGCATTTGCATT 59.965 45.000 16.21 8.30 44.61 3.56
1343 1495 4.148838 ACAGCAACCTAAATGCAAAGGTA 58.851 39.130 16.52 0.00 45.51 3.08
1353 1514 1.003331 CGACGCAAACAGCAACCTAAA 60.003 47.619 0.00 0.00 46.13 1.85
1370 1531 1.319541 TGTCTATAGGCTGGCTCGAC 58.680 55.000 7.13 13.17 0.00 4.20
1379 1540 4.995124 TCAGTCTTCGTTTGTCTATAGGC 58.005 43.478 0.00 0.00 0.00 3.93
1381 1542 6.415280 CCGATTCAGTCTTCGTTTGTCTATAG 59.585 42.308 0.00 0.00 33.60 1.31
1393 1554 4.201724 CGTTCCAAATCCGATTCAGTCTTC 60.202 45.833 0.00 0.00 0.00 2.87
1415 1576 1.683917 AGTGGAGTATAGAGCTTGCCG 59.316 52.381 0.00 0.00 0.00 5.69
1482 1643 7.346471 ACTAGTACATATTTTCCACAGGCATT 58.654 34.615 0.00 0.00 0.00 3.56
1512 1681 7.425606 ACATTAGCTTGAAACCACAAGTAAAG 58.574 34.615 0.00 0.00 45.98 1.85
1513 1682 7.284489 AGACATTAGCTTGAAACCACAAGTAAA 59.716 33.333 0.00 0.00 45.98 2.01
1514 1683 6.770785 AGACATTAGCTTGAAACCACAAGTAA 59.229 34.615 0.00 0.00 45.98 2.24
1515 1684 6.296026 AGACATTAGCTTGAAACCACAAGTA 58.704 36.000 0.00 0.00 45.98 2.24
1516 1685 5.133221 AGACATTAGCTTGAAACCACAAGT 58.867 37.500 0.00 0.00 45.98 3.16
1527 1696 2.648059 CCTGGGGAAGACATTAGCTTG 58.352 52.381 0.00 0.00 0.00 4.01
1528 1697 1.064389 GCCTGGGGAAGACATTAGCTT 60.064 52.381 0.00 0.00 0.00 3.74
1582 1758 9.699410 TGTCAATGGTTTCCTGATATCTTATTT 57.301 29.630 3.98 0.00 0.00 1.40
1583 1759 9.347240 CTGTCAATGGTTTCCTGATATCTTATT 57.653 33.333 3.98 0.00 0.00 1.40
1584 1760 8.497745 ACTGTCAATGGTTTCCTGATATCTTAT 58.502 33.333 3.98 0.00 0.00 1.73
1586 1762 6.725364 ACTGTCAATGGTTTCCTGATATCTT 58.275 36.000 3.98 0.00 0.00 2.40
1610 1786 5.640147 ACCCTGAATTGTGAAGGATAACAA 58.360 37.500 0.00 0.00 40.36 2.83
1699 1875 3.445805 ACCAGTTTTCCACGACAAACAAT 59.554 39.130 0.00 0.00 35.66 2.71
1799 1975 7.309438 GCACTGACATACATCTAGATACATCCA 60.309 40.741 4.54 0.00 0.00 3.41
1934 2229 6.600427 TGTTGAATGCAGTATGTTCTGATGAT 59.400 34.615 0.00 0.00 39.31 2.45
2018 2313 6.067217 AGGAATATGTACTCTGGTTGCTTT 57.933 37.500 0.00 0.00 0.00 3.51
2579 2874 3.077907 CCCGAGCTCCAAAAGGGA 58.922 61.111 16.43 0.00 44.70 4.20
2580 2875 2.751837 GCCCGAGCTCCAAAAGGG 60.752 66.667 16.95 16.95 44.72 3.95
2590 2885 4.154347 CCTCACTGGAGCCCGAGC 62.154 72.222 0.00 0.00 39.96 5.03
2591 2886 4.154347 GCCTCACTGGAGCCCGAG 62.154 72.222 0.00 0.00 39.96 4.63
2594 2889 3.791586 GAGGCCTCACTGGAGCCC 61.792 72.222 28.43 0.00 38.96 5.19
2595 2890 3.791586 GGAGGCCTCACTGGAGCC 61.792 72.222 33.29 11.24 39.96 4.70
2596 2891 4.154347 CGGAGGCCTCACTGGAGC 62.154 72.222 33.29 13.59 39.96 4.70
2597 2892 3.465403 CCGGAGGCCTCACTGGAG 61.465 72.222 33.29 16.00 46.14 3.86
2609 2904 7.887996 TGAAATTTGAAATTTGAATCCGGAG 57.112 32.000 19.47 0.00 0.00 4.63
2610 2905 8.719648 CAATGAAATTTGAAATTTGAATCCGGA 58.280 29.630 19.47 6.61 31.22 5.14
2611 2906 8.719648 TCAATGAAATTTGAAATTTGAATCCGG 58.280 29.630 19.47 0.00 31.22 5.14
2631 2926 9.834628 GAGGTGTAAAAATACGAATTTCAATGA 57.165 29.630 0.00 0.00 34.12 2.57
2632 2927 9.619316 TGAGGTGTAAAAATACGAATTTCAATG 57.381 29.630 0.00 0.00 34.12 2.82
2684 2979 9.964354 ACACATGTGTATTATGCCTTCATATAT 57.036 29.630 29.66 0.00 42.90 0.86
2685 2980 9.218440 CACACATGTGTATTATGCCTTCATATA 57.782 33.333 30.11 0.00 42.83 0.86
2686 2981 8.102800 CACACATGTGTATTATGCCTTCATAT 57.897 34.615 30.11 0.00 42.83 1.78
2687 2982 7.495135 CACACATGTGTATTATGCCTTCATA 57.505 36.000 30.11 0.00 42.83 2.15
2688 2983 6.381481 CACACATGTGTATTATGCCTTCAT 57.619 37.500 30.11 0.33 42.83 2.57
2689 2984 5.816449 CACACATGTGTATTATGCCTTCA 57.184 39.130 30.11 0.00 42.83 3.02
2703 2998 8.994429 TTTGAACTGAAAATTTACACACATGT 57.006 26.923 0.00 0.00 43.30 3.21
2718 3013 9.695526 CCTCATTTCAATGTATTTTGAACTGAA 57.304 29.630 15.90 5.83 46.03 3.02
2719 3014 8.306038 CCCTCATTTCAATGTATTTTGAACTGA 58.694 33.333 14.93 14.93 45.33 3.41
2720 3015 7.063780 GCCCTCATTTCAATGTATTTTGAACTG 59.936 37.037 9.63 9.63 43.38 3.16
2721 3016 7.038799 AGCCCTCATTTCAATGTATTTTGAACT 60.039 33.333 0.00 0.00 43.38 3.01
2722 3017 7.063780 CAGCCCTCATTTCAATGTATTTTGAAC 59.936 37.037 0.00 0.00 43.38 3.18
2723 3018 7.098477 CAGCCCTCATTTCAATGTATTTTGAA 58.902 34.615 0.00 0.00 42.33 2.69
2724 3019 6.211184 ACAGCCCTCATTTCAATGTATTTTGA 59.789 34.615 0.00 0.00 37.65 2.69
2725 3020 6.311935 CACAGCCCTCATTTCAATGTATTTTG 59.688 38.462 0.00 0.00 37.65 2.44
2726 3021 6.400568 CACAGCCCTCATTTCAATGTATTTT 58.599 36.000 0.00 0.00 37.65 1.82
2727 3022 5.625197 GCACAGCCCTCATTTCAATGTATTT 60.625 40.000 0.00 0.00 37.65 1.40
2728 3023 4.142093 GCACAGCCCTCATTTCAATGTATT 60.142 41.667 0.00 0.00 37.65 1.89
2729 3024 3.382546 GCACAGCCCTCATTTCAATGTAT 59.617 43.478 0.00 0.00 37.65 2.29
2730 3025 2.754552 GCACAGCCCTCATTTCAATGTA 59.245 45.455 0.00 0.00 37.65 2.29
2731 3026 1.547372 GCACAGCCCTCATTTCAATGT 59.453 47.619 0.00 0.00 37.65 2.71
2732 3027 1.546923 TGCACAGCCCTCATTTCAATG 59.453 47.619 0.00 0.00 37.75 2.82
2733 3028 1.927487 TGCACAGCCCTCATTTCAAT 58.073 45.000 0.00 0.00 0.00 2.57
2734 3029 1.702182 TTGCACAGCCCTCATTTCAA 58.298 45.000 0.00 0.00 0.00 2.69
2735 3030 1.702182 TTTGCACAGCCCTCATTTCA 58.298 45.000 0.00 0.00 0.00 2.69
2736 3031 2.818130 TTTTGCACAGCCCTCATTTC 57.182 45.000 0.00 0.00 0.00 2.17
2753 3048 3.308401 ACAGCCCCAGATTTGTCTTTTT 58.692 40.909 0.00 0.00 0.00 1.94
2754 3049 2.962859 ACAGCCCCAGATTTGTCTTTT 58.037 42.857 0.00 0.00 0.00 2.27
2755 3050 2.683211 ACAGCCCCAGATTTGTCTTT 57.317 45.000 0.00 0.00 0.00 2.52
2756 3051 2.683211 AACAGCCCCAGATTTGTCTT 57.317 45.000 0.00 0.00 0.00 3.01
2757 3052 2.683211 AAACAGCCCCAGATTTGTCT 57.317 45.000 0.00 0.00 0.00 3.41
2758 3053 3.572255 TGTTAAACAGCCCCAGATTTGTC 59.428 43.478 0.00 0.00 0.00 3.18
2759 3054 3.320826 GTGTTAAACAGCCCCAGATTTGT 59.679 43.478 0.00 0.00 0.00 2.83
2760 3055 3.320541 TGTGTTAAACAGCCCCAGATTTG 59.679 43.478 0.00 0.00 33.78 2.32
2761 3056 3.571590 TGTGTTAAACAGCCCCAGATTT 58.428 40.909 0.00 0.00 33.78 2.17
2762 3057 3.237268 TGTGTTAAACAGCCCCAGATT 57.763 42.857 0.00 0.00 33.78 2.40
2763 3058 2.969821 TGTGTTAAACAGCCCCAGAT 57.030 45.000 0.00 0.00 33.78 2.90
2764 3059 2.107378 TCATGTGTTAAACAGCCCCAGA 59.893 45.455 0.00 0.00 43.64 3.86
2765 3060 2.513753 TCATGTGTTAAACAGCCCCAG 58.486 47.619 0.00 0.00 43.64 4.45
2766 3061 2.666272 TCATGTGTTAAACAGCCCCA 57.334 45.000 0.00 0.00 43.64 4.96
2767 3062 4.270008 AGTATCATGTGTTAAACAGCCCC 58.730 43.478 0.00 0.00 43.64 5.80
2768 3063 6.204882 GGATAGTATCATGTGTTAAACAGCCC 59.795 42.308 12.19 0.00 43.64 5.19
2769 3064 6.765989 TGGATAGTATCATGTGTTAAACAGCC 59.234 38.462 12.19 0.00 43.64 4.85
2770 3065 7.786178 TGGATAGTATCATGTGTTAAACAGC 57.214 36.000 12.19 0.00 43.64 4.40
2771 3066 8.993121 GGATGGATAGTATCATGTGTTAAACAG 58.007 37.037 12.19 0.00 43.64 3.16
2772 3067 8.713971 AGGATGGATAGTATCATGTGTTAAACA 58.286 33.333 12.19 0.00 44.79 2.83
2773 3068 9.209175 GAGGATGGATAGTATCATGTGTTAAAC 57.791 37.037 12.19 0.00 0.00 2.01
2774 3069 8.375506 GGAGGATGGATAGTATCATGTGTTAAA 58.624 37.037 12.19 0.00 0.00 1.52
2775 3070 7.734865 AGGAGGATGGATAGTATCATGTGTTAA 59.265 37.037 12.19 0.00 0.00 2.01
2776 3071 7.248976 AGGAGGATGGATAGTATCATGTGTTA 58.751 38.462 12.19 0.00 0.00 2.41
2777 3072 6.087456 AGGAGGATGGATAGTATCATGTGTT 58.913 40.000 12.19 0.00 0.00 3.32
2778 3073 5.659503 AGGAGGATGGATAGTATCATGTGT 58.340 41.667 12.19 0.00 0.00 3.72
2779 3074 6.323482 CCTAGGAGGATGGATAGTATCATGTG 59.677 46.154 1.05 0.00 37.67 3.21
2780 3075 6.439487 CCTAGGAGGATGGATAGTATCATGT 58.561 44.000 1.05 0.00 37.67 3.21
2781 3076 5.304101 GCCTAGGAGGATGGATAGTATCATG 59.696 48.000 14.75 0.00 37.67 3.07
2782 3077 5.463154 GCCTAGGAGGATGGATAGTATCAT 58.537 45.833 14.75 4.03 37.67 2.45
2783 3078 4.326212 GGCCTAGGAGGATGGATAGTATCA 60.326 50.000 14.75 0.00 37.67 2.15
2784 3079 4.219919 GGCCTAGGAGGATGGATAGTATC 58.780 52.174 14.75 1.11 37.67 2.24
2785 3080 3.602922 TGGCCTAGGAGGATGGATAGTAT 59.397 47.826 14.75 0.00 37.67 2.12
2786 3081 3.001086 TGGCCTAGGAGGATGGATAGTA 58.999 50.000 14.75 0.00 37.67 1.82
2787 3082 1.795786 TGGCCTAGGAGGATGGATAGT 59.204 52.381 14.75 0.00 37.67 2.12
2788 3083 2.630889 TGGCCTAGGAGGATGGATAG 57.369 55.000 14.75 0.00 37.67 2.08
2789 3084 2.562904 CCATGGCCTAGGAGGATGGATA 60.563 54.545 21.54 0.00 40.45 2.59
2790 3085 1.666365 CATGGCCTAGGAGGATGGAT 58.334 55.000 14.75 0.00 37.67 3.41
2791 3086 0.474466 CCATGGCCTAGGAGGATGGA 60.474 60.000 21.54 0.00 40.45 3.41
2792 3087 0.474466 TCCATGGCCTAGGAGGATGG 60.474 60.000 14.75 18.63 39.75 3.51
2793 3088 1.666365 ATCCATGGCCTAGGAGGATG 58.334 55.000 14.75 10.30 37.67 3.51
2794 3089 2.377869 CAAATCCATGGCCTAGGAGGAT 59.622 50.000 14.75 15.35 37.67 3.24
2795 3090 1.776667 CAAATCCATGGCCTAGGAGGA 59.223 52.381 14.75 13.68 37.67 3.71
2796 3091 1.496429 ACAAATCCATGGCCTAGGAGG 59.504 52.381 14.75 8.31 37.34 4.30
2797 3092 2.441001 AGACAAATCCATGGCCTAGGAG 59.559 50.000 14.75 10.39 37.34 3.69
2798 3093 2.492025 AGACAAATCCATGGCCTAGGA 58.508 47.619 14.75 17.37 38.50 2.94
2799 3094 3.303351 AAGACAAATCCATGGCCTAGG 57.697 47.619 6.96 3.67 0.00 3.02
2800 3095 5.665916 AAAAAGACAAATCCATGGCCTAG 57.334 39.130 6.96 0.00 0.00 3.02
2819 3114 4.902443 TGAATTGCGACCTGTACAAAAA 57.098 36.364 0.00 0.00 0.00 1.94
2820 3115 4.261405 CCTTGAATTGCGACCTGTACAAAA 60.261 41.667 0.00 0.00 0.00 2.44
2821 3116 3.252215 CCTTGAATTGCGACCTGTACAAA 59.748 43.478 0.00 0.00 0.00 2.83
2822 3117 2.811431 CCTTGAATTGCGACCTGTACAA 59.189 45.455 0.00 0.00 0.00 2.41
2823 3118 2.224426 ACCTTGAATTGCGACCTGTACA 60.224 45.455 0.00 0.00 0.00 2.90
2824 3119 2.423577 ACCTTGAATTGCGACCTGTAC 58.576 47.619 0.00 0.00 0.00 2.90
2825 3120 2.851263 ACCTTGAATTGCGACCTGTA 57.149 45.000 0.00 0.00 0.00 2.74
2826 3121 2.851263 TACCTTGAATTGCGACCTGT 57.149 45.000 0.00 0.00 0.00 4.00
2827 3122 4.155826 TGAAATACCTTGAATTGCGACCTG 59.844 41.667 0.00 0.00 0.00 4.00
2828 3123 4.331968 TGAAATACCTTGAATTGCGACCT 58.668 39.130 0.00 0.00 0.00 3.85
2829 3124 4.695217 TGAAATACCTTGAATTGCGACC 57.305 40.909 0.00 0.00 0.00 4.79
2830 3125 5.879237 TGATGAAATACCTTGAATTGCGAC 58.121 37.500 0.00 0.00 0.00 5.19
2831 3126 6.318396 TCATGATGAAATACCTTGAATTGCGA 59.682 34.615 0.00 0.00 0.00 5.10
2832 3127 6.497437 TCATGATGAAATACCTTGAATTGCG 58.503 36.000 0.00 0.00 0.00 4.85
2833 3128 8.882415 ATTCATGATGAAATACCTTGAATTGC 57.118 30.769 12.36 0.00 40.12 3.56
2870 3165 6.327154 CGTGTATGTAAGGATGTAACTCACA 58.673 40.000 0.00 0.00 42.69 3.58
2871 3166 5.231568 GCGTGTATGTAAGGATGTAACTCAC 59.768 44.000 0.00 0.00 0.00 3.51
2872 3167 5.105675 TGCGTGTATGTAAGGATGTAACTCA 60.106 40.000 0.00 0.00 0.00 3.41
2873 3168 5.345702 TGCGTGTATGTAAGGATGTAACTC 58.654 41.667 0.00 0.00 0.00 3.01
2874 3169 5.333299 TGCGTGTATGTAAGGATGTAACT 57.667 39.130 0.00 0.00 0.00 2.24
2875 3170 7.884816 ATATGCGTGTATGTAAGGATGTAAC 57.115 36.000 0.00 0.00 0.00 2.50
2876 3171 8.896320 AAATATGCGTGTATGTAAGGATGTAA 57.104 30.769 0.00 0.00 0.00 2.41
2877 3172 8.896320 AAAATATGCGTGTATGTAAGGATGTA 57.104 30.769 0.00 0.00 0.00 2.29
2878 3173 7.801716 AAAATATGCGTGTATGTAAGGATGT 57.198 32.000 0.00 0.00 0.00 3.06
2938 3233 7.995488 TGGAGGCCTTTATTTTTGAAAAATTCA 59.005 29.630 19.57 6.12 38.04 2.57
2939 3234 8.389779 TGGAGGCCTTTATTTTTGAAAAATTC 57.610 30.769 19.57 9.97 0.00 2.17
2940 3235 8.795513 CATGGAGGCCTTTATTTTTGAAAAATT 58.204 29.630 19.57 1.63 0.00 1.82
2941 3236 7.394077 CCATGGAGGCCTTTATTTTTGAAAAAT 59.606 33.333 18.56 18.56 0.00 1.82
2942 3237 6.714356 CCATGGAGGCCTTTATTTTTGAAAAA 59.286 34.615 6.77 5.47 0.00 1.94
2943 3238 6.043706 TCCATGGAGGCCTTTATTTTTGAAAA 59.956 34.615 11.44 0.00 37.29 2.29
2944 3239 5.545723 TCCATGGAGGCCTTTATTTTTGAAA 59.454 36.000 11.44 0.00 37.29 2.69
2945 3240 5.090139 TCCATGGAGGCCTTTATTTTTGAA 58.910 37.500 11.44 0.00 37.29 2.69
2946 3241 4.682563 TCCATGGAGGCCTTTATTTTTGA 58.317 39.130 11.44 0.00 37.29 2.69
2947 3242 4.681512 GCTCCATGGAGGCCTTTATTTTTG 60.682 45.833 36.92 12.89 42.19 2.44
2948 3243 3.452264 GCTCCATGGAGGCCTTTATTTTT 59.548 43.478 36.92 0.00 42.19 1.94
2949 3244 3.033909 GCTCCATGGAGGCCTTTATTTT 58.966 45.455 36.92 0.00 42.19 1.82
2950 3245 2.245806 AGCTCCATGGAGGCCTTTATTT 59.754 45.455 36.92 13.14 42.19 1.40
2951 3246 1.855599 AGCTCCATGGAGGCCTTTATT 59.144 47.619 36.92 13.75 42.19 1.40
2952 3247 1.423161 GAGCTCCATGGAGGCCTTTAT 59.577 52.381 36.92 16.48 42.19 1.40
2953 3248 0.839946 GAGCTCCATGGAGGCCTTTA 59.160 55.000 36.92 4.58 42.19 1.85
2954 3249 1.611965 GAGCTCCATGGAGGCCTTT 59.388 57.895 36.92 17.10 42.19 3.11
2955 3250 2.739996 CGAGCTCCATGGAGGCCTT 61.740 63.158 36.92 17.72 42.19 4.35
2956 3251 3.160047 CGAGCTCCATGGAGGCCT 61.160 66.667 36.92 27.78 42.19 5.19
2957 3252 4.247380 CCGAGCTCCATGGAGGCC 62.247 72.222 36.92 23.97 42.19 5.19
2958 3253 4.925861 GCCGAGCTCCATGGAGGC 62.926 72.222 36.92 29.82 42.19 4.70
2959 3254 4.247380 GGCCGAGCTCCATGGAGG 62.247 72.222 36.92 25.05 42.19 4.30
2960 3255 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
2961 3256 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
2962 3257 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
2963 3258 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
2965 3260 2.525124 TTTTGGAGGCCGAGCTCCA 61.525 57.895 8.47 7.35 46.84 3.86
2966 3261 2.041115 GTTTTGGAGGCCGAGCTCC 61.041 63.158 8.47 0.00 40.05 4.70
2967 3262 2.391389 CGTTTTGGAGGCCGAGCTC 61.391 63.158 2.73 2.73 0.00 4.09
2968 3263 2.358737 CGTTTTGGAGGCCGAGCT 60.359 61.111 0.00 0.00 0.00 4.09
2969 3264 4.103103 GCGTTTTGGAGGCCGAGC 62.103 66.667 0.00 0.00 33.08 5.03
2974 3269 0.241213 GAGAAAGGCGTTTTGGAGGC 59.759 55.000 5.76 0.00 38.40 4.70
2975 3270 0.517316 CGAGAAAGGCGTTTTGGAGG 59.483 55.000 5.76 0.00 0.00 4.30
2976 3271 1.508632 TCGAGAAAGGCGTTTTGGAG 58.491 50.000 5.76 0.00 0.00 3.86
2977 3272 2.178912 ATCGAGAAAGGCGTTTTGGA 57.821 45.000 5.76 4.66 0.00 3.53
2978 3273 2.989422 AATCGAGAAAGGCGTTTTGG 57.011 45.000 5.76 0.00 0.00 3.28
2979 3274 5.028375 GGAATAATCGAGAAAGGCGTTTTG 58.972 41.667 5.76 0.16 0.00 2.44
2980 3275 4.941873 AGGAATAATCGAGAAAGGCGTTTT 59.058 37.500 5.76 0.00 0.00 2.43
2981 3276 4.514401 AGGAATAATCGAGAAAGGCGTTT 58.486 39.130 3.62 3.62 0.00 3.60
2982 3277 4.138487 AGGAATAATCGAGAAAGGCGTT 57.862 40.909 0.00 0.00 0.00 4.84
2983 3278 3.821421 AGGAATAATCGAGAAAGGCGT 57.179 42.857 0.00 0.00 0.00 5.68
2984 3279 4.372656 AGAAGGAATAATCGAGAAAGGCG 58.627 43.478 0.00 0.00 0.00 5.52
2985 3280 6.685527 AAAGAAGGAATAATCGAGAAAGGC 57.314 37.500 0.00 0.00 0.00 4.35
3237 3534 6.653526 TGTGCTTTAGCCATAATTGCATAT 57.346 33.333 0.00 0.00 41.18 1.78
3672 3969 4.510571 ACTAAAAGTGTGACCAAACGAGT 58.489 39.130 0.00 0.00 0.00 4.18
3916 4213 9.988815 AATGTTGTATTTTATGGTGCTAACAAA 57.011 25.926 0.00 0.00 0.00 2.83
4190 4490 5.401531 TTCTTCAGATAACTTGGCTACGT 57.598 39.130 0.00 0.00 0.00 3.57
4412 4716 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
4583 4888 8.656849 ACATCACGATTACAACAGAAGTAATTC 58.343 33.333 0.00 0.00 41.02 2.17
4613 4918 9.667989 ACGTGGTTGTTGTTAAATTTTATCTAC 57.332 29.630 0.00 5.43 0.00 2.59
4954 5260 5.423610 AGAGCAAACCTTCTCTAGCTTATCA 59.576 40.000 0.00 0.00 37.86 2.15
5125 5560 5.232202 CCAATGCATCACTGTACTAAGTACG 59.768 44.000 0.00 0.00 41.41 3.67
5129 5564 3.879295 CCCCAATGCATCACTGTACTAAG 59.121 47.826 0.00 0.00 0.00 2.18
5138 5573 2.945668 GTCTTAGTCCCCAATGCATCAC 59.054 50.000 0.00 0.00 0.00 3.06
5139 5574 2.846206 AGTCTTAGTCCCCAATGCATCA 59.154 45.455 0.00 0.00 0.00 3.07
5279 5714 9.099454 CCAATTATCTTAAGACAGGAGTAACAC 57.901 37.037 7.48 0.00 0.00 3.32
5282 5717 8.090788 AGCCAATTATCTTAAGACAGGAGTAA 57.909 34.615 7.48 1.94 0.00 2.24
5368 5803 5.507482 CCATGGTTCAGAAGCAATGATGATC 60.507 44.000 18.69 0.00 42.83 2.92
5369 5804 4.341235 CCATGGTTCAGAAGCAATGATGAT 59.659 41.667 18.69 0.00 42.83 2.45
5370 5805 3.697542 CCATGGTTCAGAAGCAATGATGA 59.302 43.478 18.69 0.00 42.83 2.92
5377 5812 6.662865 TTATTTTTCCATGGTTCAGAAGCA 57.337 33.333 17.22 17.22 43.83 3.91
5382 5817 9.715123 GTTTTTGTTTATTTTTCCATGGTTCAG 57.285 29.630 12.58 0.00 0.00 3.02
5383 5818 9.454859 AGTTTTTGTTTATTTTTCCATGGTTCA 57.545 25.926 12.58 0.00 0.00 3.18
5413 5848 3.194329 CAGCTCCTGAAAAGGGAAAATCC 59.806 47.826 0.00 0.00 32.44 3.01
5452 5895 1.937899 AGTTTTTGTTCAGTCGGGTCG 59.062 47.619 0.00 0.00 0.00 4.79
5526 5975 4.870363 ACAAATGTGTTGGTTGCTGATAC 58.130 39.130 0.00 0.00 32.58 2.24
5548 5997 3.153919 GCAAGGTTCTGTGATAACCCAA 58.846 45.455 1.47 0.00 46.33 4.12
5566 6015 1.202710 TGACTGCCGTTTTAGGAGCAA 60.203 47.619 0.00 0.00 34.26 3.91
5586 6035 6.968904 CGTGTTAGCTGCTAATTTCATGAAAT 59.031 34.615 24.83 24.83 42.35 2.17
5593 6042 4.921470 TCACGTGTTAGCTGCTAATTTC 57.079 40.909 23.51 12.45 0.00 2.17
5618 6067 4.253685 TCAGAAAACATGTAGCCTGTAGC 58.746 43.478 16.06 0.00 44.25 3.58
5779 6229 4.790861 GTCGGACGGGAAGACGGC 62.791 72.222 0.00 0.00 42.35 5.68
5789 6239 0.948623 TTGACAATGGCAGTCGGACG 60.949 55.000 1.89 0.00 38.83 4.79
5817 6267 6.544620 GTGCACATCACAGAATTTAATTCG 57.455 37.500 13.17 9.26 44.98 3.34
5858 6308 7.122055 CAGGGTATACAATTAGCAAAGGAAACA 59.878 37.037 5.01 0.00 0.00 2.83
5889 6339 2.270205 CCGATTGCAGTGGAGCCT 59.730 61.111 0.00 0.00 0.00 4.58
5998 6449 2.639839 GGACCCATGATACACTGGCTAT 59.360 50.000 0.00 0.00 0.00 2.97
6022 6474 4.634004 GTCATCGGTGTGGATATTTTCACA 59.366 41.667 0.00 0.00 41.01 3.58
6294 6765 2.440253 ACTCCTATCCTACTCGAGCAGT 59.560 50.000 13.61 0.00 39.41 4.40
6460 6931 3.717707 CACCGTCTAATCGAATGACCAT 58.282 45.455 0.00 0.00 0.00 3.55
6464 6935 4.642445 TTAGCACCGTCTAATCGAATGA 57.358 40.909 0.00 0.00 0.00 2.57
6504 6975 5.765182 ACAAGTGCTGCTACTAAAAGATGTT 59.235 36.000 0.00 0.00 0.00 2.71
6506 6977 5.409520 TCACAAGTGCTGCTACTAAAAGATG 59.590 40.000 0.00 0.45 0.00 2.90
6507 6978 5.551233 TCACAAGTGCTGCTACTAAAAGAT 58.449 37.500 0.00 0.00 0.00 2.40
6508 6979 4.956085 TCACAAGTGCTGCTACTAAAAGA 58.044 39.130 0.00 0.00 0.00 2.52
6509 6980 5.869753 ATCACAAGTGCTGCTACTAAAAG 57.130 39.130 0.00 0.00 0.00 2.27
6510 6981 7.158697 TCTTATCACAAGTGCTGCTACTAAAA 58.841 34.615 0.00 0.00 0.00 1.52
6511 6982 6.697395 TCTTATCACAAGTGCTGCTACTAAA 58.303 36.000 0.00 0.00 0.00 1.85
6512 6983 6.152831 TCTCTTATCACAAGTGCTGCTACTAA 59.847 38.462 0.00 0.00 0.00 2.24
6521 6992 2.349886 CGGCTTCTCTTATCACAAGTGC 59.650 50.000 0.00 0.00 0.00 4.40
6527 6998 2.032620 TCCTCCGGCTTCTCTTATCAC 58.967 52.381 0.00 0.00 0.00 3.06
6531 7002 1.475403 CACTCCTCCGGCTTCTCTTA 58.525 55.000 0.00 0.00 0.00 2.10
6536 7007 4.070552 ACGCACTCCTCCGGCTTC 62.071 66.667 0.00 0.00 0.00 3.86
6603 8106 1.231958 ATCGTTTTCCGCCGCTTCAA 61.232 50.000 0.00 0.00 36.19 2.69
6652 8160 0.107800 TGTTGTTTTCGTCGGTCCCA 60.108 50.000 0.00 0.00 0.00 4.37
6653 8161 1.232119 ATGTTGTTTTCGTCGGTCCC 58.768 50.000 0.00 0.00 0.00 4.46
6654 8162 5.292589 ACATATATGTTGTTTTCGTCGGTCC 59.707 40.000 12.75 0.00 37.90 4.46
6655 8163 6.340537 ACATATATGTTGTTTTCGTCGGTC 57.659 37.500 12.75 0.00 37.90 4.79
6677 8202 4.906618 TGTCCCCTCAAAGTTTGATCTAC 58.093 43.478 18.35 13.87 39.30 2.59
6853 8387 3.872728 CGAGATGACGACGGCGGA 61.873 66.667 18.49 0.00 43.17 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.