Multiple sequence alignment - TraesCS2B01G224700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G224700 chr2B 100.000 2985 0 0 1 2985 214536173 214533189 0.000000e+00 5513.0
1 TraesCS2B01G224700 chr2A 89.248 2074 115 58 962 2981 166830176 166828157 0.000000e+00 2495.0
2 TraesCS2B01G224700 chr2A 94.340 636 22 7 174 801 166830878 166830249 0.000000e+00 963.0
3 TraesCS2B01G224700 chr2A 92.737 179 8 1 1 179 166831079 166830906 1.370000e-63 254.0
4 TraesCS2B01G224700 chr2A 100.000 34 0 0 862 895 166830245 166830212 2.480000e-06 63.9
5 TraesCS2B01G224700 chr2D 93.048 863 50 7 2119 2981 157018151 157017299 0.000000e+00 1253.0
6 TraesCS2B01G224700 chr2D 84.901 1318 91 46 850 2119 157019485 157018228 0.000000e+00 1232.0
7 TraesCS2B01G224700 chr2D 91.343 335 19 4 487 820 157019804 157019479 1.630000e-122 449.0
8 TraesCS2B01G224700 chr2D 93.567 171 6 1 351 521 157019969 157019804 1.780000e-62 250.0
9 TraesCS2B01G224700 chr2D 100.000 38 0 0 1155 1192 157036264 157036227 1.480000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G224700 chr2B 214533189 214536173 2984 True 5513.000 5513 100.00000 1 2985 1 chr2B.!!$R1 2984
1 TraesCS2B01G224700 chr2A 166828157 166831079 2922 True 943.975 2495 94.08125 1 2981 4 chr2A.!!$R1 2980
2 TraesCS2B01G224700 chr2D 157017299 157019969 2670 True 796.000 1253 90.71475 351 2981 4 chr2D.!!$R2 2630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 901 0.094558 GACGTGTGTGTGTGTGTGTG 59.905 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2494 2732 0.038744 CCTGGCAAATGGGAGTGACT 59.961 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.204160 CCCAAAAAGAATTACCAGAAACTTTCT 58.796 33.333 0.00 0.00 41.70 2.52
73 74 2.318578 CTTTGTGCTGTATTTGTGGCG 58.681 47.619 0.00 0.00 0.00 5.69
114 115 3.325293 CAGTATGAGAACTGGTGCACT 57.675 47.619 17.98 0.00 42.63 4.40
115 116 3.668447 CAGTATGAGAACTGGTGCACTT 58.332 45.455 17.98 2.68 42.63 3.16
116 117 3.434641 CAGTATGAGAACTGGTGCACTTG 59.565 47.826 17.98 12.10 42.63 3.16
117 118 1.901591 ATGAGAACTGGTGCACTTGG 58.098 50.000 17.98 9.52 0.00 3.61
118 119 0.179020 TGAGAACTGGTGCACTTGGG 60.179 55.000 17.98 7.04 0.00 4.12
158 159 0.611618 CTGCCAACATACCTGCCCAA 60.612 55.000 0.00 0.00 0.00 4.12
260 294 2.866762 GCACTGGATCGATAACCAAGAC 59.133 50.000 7.21 0.00 35.67 3.01
278 312 4.330944 AGACGTGGAATTGTGTACTTGA 57.669 40.909 0.00 0.00 0.00 3.02
282 316 4.219033 CGTGGAATTGTGTACTTGAAAGC 58.781 43.478 0.00 0.00 0.00 3.51
293 327 4.335315 TGTACTTGAAAGCACCTTCTGTTG 59.665 41.667 0.00 0.00 0.00 3.33
339 373 2.202222 GTTCATCAGCGTGCGCAC 60.202 61.111 30.42 30.42 44.88 5.34
524 592 2.203112 TGCGAGGCATGCCATCTC 60.203 61.111 37.18 24.66 38.92 2.75
525 593 2.110627 GCGAGGCATGCCATCTCT 59.889 61.111 37.18 17.76 38.92 3.10
526 594 1.960250 GCGAGGCATGCCATCTCTC 60.960 63.158 37.18 23.93 38.92 3.20
527 595 1.747145 CGAGGCATGCCATCTCTCT 59.253 57.895 37.18 16.13 38.92 3.10
578 646 0.754217 CATGGGCTTGGGATCACAGG 60.754 60.000 1.98 1.98 0.00 4.00
636 704 1.548081 TCCATTGTGTTGGCCTGATG 58.452 50.000 3.32 0.00 36.66 3.07
699 771 1.227321 ACGAGGTTGCCGTTTCGAA 60.227 52.632 0.00 0.00 36.83 3.71
708 780 2.391389 CCGTTTCGAAGCTCCTGCC 61.391 63.158 10.39 0.00 40.80 4.85
749 821 1.943340 GATCGGGAGCCATTTTCACTC 59.057 52.381 0.00 0.00 0.00 3.51
751 823 2.184533 TCGGGAGCCATTTTCACTCTA 58.815 47.619 0.00 0.00 0.00 2.43
753 825 2.644676 GGGAGCCATTTTCACTCTACC 58.355 52.381 0.00 0.00 0.00 3.18
807 879 3.021263 CCCCCTACCCACCCCAAG 61.021 72.222 0.00 0.00 0.00 3.61
808 880 2.126372 CCCCTACCCACCCCAAGA 59.874 66.667 0.00 0.00 0.00 3.02
809 881 2.001269 CCCCTACCCACCCCAAGAG 61.001 68.421 0.00 0.00 0.00 2.85
810 882 2.001269 CCCTACCCACCCCAAGAGG 61.001 68.421 0.00 0.00 0.00 3.69
811 883 1.082206 CCTACCCACCCCAAGAGGA 59.918 63.158 0.00 0.00 38.24 3.71
812 884 1.272554 CCTACCCACCCCAAGAGGAC 61.273 65.000 0.00 0.00 38.24 3.85
813 885 1.611261 TACCCACCCCAAGAGGACG 60.611 63.158 0.00 0.00 38.24 4.79
814 886 2.390777 TACCCACCCCAAGAGGACGT 62.391 60.000 0.00 0.00 38.24 4.34
815 887 2.347490 CCACCCCAAGAGGACGTG 59.653 66.667 0.00 0.00 38.24 4.49
816 888 2.516888 CCACCCCAAGAGGACGTGT 61.517 63.158 0.00 0.00 38.24 4.49
817 889 1.301716 CACCCCAAGAGGACGTGTG 60.302 63.158 0.00 0.00 38.24 3.82
818 890 1.764854 ACCCCAAGAGGACGTGTGT 60.765 57.895 0.00 0.00 38.24 3.72
819 891 1.301716 CCCCAAGAGGACGTGTGTG 60.302 63.158 0.00 0.00 38.24 3.82
820 892 1.445942 CCCAAGAGGACGTGTGTGT 59.554 57.895 0.00 0.00 38.24 3.72
821 893 0.880278 CCCAAGAGGACGTGTGTGTG 60.880 60.000 0.00 0.00 38.24 3.82
822 894 0.179084 CCAAGAGGACGTGTGTGTGT 60.179 55.000 0.00 0.00 36.89 3.72
823 895 0.930310 CAAGAGGACGTGTGTGTGTG 59.070 55.000 0.00 0.00 0.00 3.82
824 896 0.535335 AAGAGGACGTGTGTGTGTGT 59.465 50.000 0.00 0.00 0.00 3.72
825 897 0.179111 AGAGGACGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
826 898 0.459585 GAGGACGTGTGTGTGTGTGT 60.460 55.000 0.00 0.00 0.00 3.72
827 899 0.739462 AGGACGTGTGTGTGTGTGTG 60.739 55.000 0.00 0.00 0.00 3.82
828 900 1.017177 GGACGTGTGTGTGTGTGTGT 61.017 55.000 0.00 0.00 0.00 3.72
829 901 0.094558 GACGTGTGTGTGTGTGTGTG 59.905 55.000 0.00 0.00 0.00 3.82
830 902 0.601576 ACGTGTGTGTGTGTGTGTGT 60.602 50.000 0.00 0.00 0.00 3.72
831 903 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
832 904 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
833 905 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
834 906 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
835 907 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
836 908 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
837 909 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
838 910 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
839 911 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
840 912 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
841 913 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
842 914 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
843 915 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
844 916 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
845 917 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
846 918 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
847 919 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
848 920 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
849 921 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
850 922 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
851 923 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
852 924 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
853 925 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
854 926 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
855 927 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
856 928 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
857 929 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
858 930 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
859 931 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
860 932 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
899 987 1.799258 GCCAACAGGTTGCTCCAGTG 61.799 60.000 6.64 0.00 39.16 3.66
901 989 1.392589 CAACAGGTTGCTCCAGTGTT 58.607 50.000 0.00 2.04 36.07 3.32
902 990 1.066002 CAACAGGTTGCTCCAGTGTTG 59.934 52.381 14.06 14.06 42.07 3.33
903 991 1.103398 ACAGGTTGCTCCAGTGTTGC 61.103 55.000 1.79 0.00 39.02 4.17
905 993 0.536006 AGGTTGCTCCAGTGTTGCTC 60.536 55.000 6.24 1.02 39.02 4.26
908 996 1.159713 TTGCTCCAGTGTTGCTCGTG 61.160 55.000 6.24 0.00 0.00 4.35
1030 1121 2.629210 CGTCTCGCCTAGCTCTCG 59.371 66.667 0.00 0.00 0.00 4.04
1031 1122 2.887889 CGTCTCGCCTAGCTCTCGG 61.888 68.421 0.00 0.00 0.00 4.63
1067 1158 3.041351 CGGCTACGTGCAGTGCAA 61.041 61.111 21.67 3.14 41.47 4.08
1099 1190 1.078426 ATCTTGCTGGTACGTGCCC 60.078 57.895 20.66 9.67 0.00 5.36
1101 1192 2.031919 TTGCTGGTACGTGCCCTG 59.968 61.111 20.66 13.65 0.00 4.45
1102 1193 4.697756 TGCTGGTACGTGCCCTGC 62.698 66.667 23.53 23.53 44.55 4.85
1120 1211 4.069232 CGCTTGGCTCTCGTCCCA 62.069 66.667 0.00 0.00 0.00 4.37
1125 1216 2.105128 GGCTCTCGTCCCATCACG 59.895 66.667 0.00 0.00 41.36 4.35
1147 1242 3.423539 TGTGCAGGAGCTCACTTAATT 57.576 42.857 17.19 0.00 39.15 1.40
1148 1243 4.551702 TGTGCAGGAGCTCACTTAATTA 57.448 40.909 17.19 0.00 39.15 1.40
1149 1244 4.507710 TGTGCAGGAGCTCACTTAATTAG 58.492 43.478 17.19 0.00 39.15 1.73
1150 1245 4.222810 TGTGCAGGAGCTCACTTAATTAGA 59.777 41.667 17.19 0.00 39.15 2.10
1239 1342 2.418910 CGGCATCCTCTCCGTCAGT 61.419 63.158 0.00 0.00 40.72 3.41
1257 1360 2.610859 GTGGCTTCTCCCCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
1304 1407 0.250640 CCTCTGCAGGTCAGCACTTT 60.251 55.000 15.13 0.00 42.56 2.66
1305 1408 1.602311 CTCTGCAGGTCAGCACTTTT 58.398 50.000 15.13 0.00 42.56 2.27
1306 1409 1.952296 CTCTGCAGGTCAGCACTTTTT 59.048 47.619 15.13 0.00 42.56 1.94
1349 1455 2.100989 GGGCATCGTATAGGAGTAGGG 58.899 57.143 1.16 0.00 0.00 3.53
1360 1466 0.464452 GGAGTAGGGCATTGTACGCT 59.536 55.000 0.00 0.00 0.00 5.07
1361 1467 1.684983 GGAGTAGGGCATTGTACGCTA 59.315 52.381 0.00 0.00 0.00 4.26
1363 1469 1.484356 GTAGGGCATTGTACGCTACG 58.516 55.000 2.80 0.00 41.70 3.51
1364 1470 0.249155 TAGGGCATTGTACGCTACGC 60.249 55.000 0.00 0.00 0.00 4.42
1400 1506 5.700832 TCAGCTTCAACTGTATACCAAACTG 59.299 40.000 0.00 0.00 38.84 3.16
1509 1618 3.151022 CTGGGAGGGAGAGGTCGC 61.151 72.222 0.00 0.00 35.85 5.19
1543 1652 0.511221 CTGCCGTCAACAAACGTAGG 59.489 55.000 0.00 0.00 41.01 3.18
1565 1674 4.534168 GCAAACTTACCCGTCTTTTCTTC 58.466 43.478 0.00 0.00 0.00 2.87
1590 1699 1.069668 CCGGCAGACAGATCATGATGA 59.930 52.381 14.30 0.00 0.00 2.92
1607 1716 8.319143 TCATGATGATCTATGTTAAGCATGTG 57.681 34.615 0.00 0.00 38.47 3.21
1676 1785 9.520204 ACAACTGTTTCATCAAGTAAGAAAATG 57.480 29.630 0.00 0.00 33.54 2.32
1677 1786 8.971321 CAACTGTTTCATCAAGTAAGAAAATGG 58.029 33.333 0.00 0.00 33.54 3.16
1678 1787 7.661040 ACTGTTTCATCAAGTAAGAAAATGGG 58.339 34.615 0.00 0.00 33.54 4.00
1679 1788 6.454795 TGTTTCATCAAGTAAGAAAATGGGC 58.545 36.000 0.00 0.00 33.54 5.36
1680 1789 6.041409 TGTTTCATCAAGTAAGAAAATGGGCA 59.959 34.615 0.00 0.00 33.54 5.36
1681 1790 6.855763 TTCATCAAGTAAGAAAATGGGCAT 57.144 33.333 0.00 0.00 0.00 4.40
1682 1791 6.211587 TCATCAAGTAAGAAAATGGGCATG 57.788 37.500 0.00 0.00 0.00 4.06
1683 1792 4.454728 TCAAGTAAGAAAATGGGCATGC 57.545 40.909 9.90 9.90 0.00 4.06
1684 1793 3.831333 TCAAGTAAGAAAATGGGCATGCA 59.169 39.130 21.36 0.00 0.00 3.96
1685 1794 4.082081 TCAAGTAAGAAAATGGGCATGCAG 60.082 41.667 21.36 0.00 0.00 4.41
1686 1795 2.167075 AGTAAGAAAATGGGCATGCAGC 59.833 45.455 21.36 2.19 44.65 5.25
1702 1811 1.066286 GCAGCCATACCATTTGCCAAA 60.066 47.619 0.00 0.00 0.00 3.28
1704 1813 2.028294 CAGCCATACCATTTGCCAAACA 60.028 45.455 0.00 0.00 0.00 2.83
1738 1866 4.774200 AGAGGCAATGGAAGCTTTTAACAT 59.226 37.500 0.00 0.69 0.00 2.71
1739 1867 5.951747 AGAGGCAATGGAAGCTTTTAACATA 59.048 36.000 0.00 0.00 0.00 2.29
1740 1868 5.965922 AGGCAATGGAAGCTTTTAACATAC 58.034 37.500 0.00 0.64 0.00 2.39
1741 1869 4.798387 GGCAATGGAAGCTTTTAACATACG 59.202 41.667 0.00 0.92 0.00 3.06
1852 1980 6.036735 GCTAAAAACGTAGGCATTCATGTCTA 59.963 38.462 0.00 0.00 41.72 2.59
1853 1981 6.811253 AAAAACGTAGGCATTCATGTCTAA 57.189 33.333 2.64 0.00 45.53 2.10
1855 1983 6.811253 AAACGTAGGCATTCATGTCTAAAA 57.189 33.333 2.64 0.00 45.53 1.52
1856 1984 6.422776 AACGTAGGCATTCATGTCTAAAAG 57.577 37.500 2.64 1.56 45.53 2.27
1858 1991 5.581085 ACGTAGGCATTCATGTCTAAAAGAC 59.419 40.000 2.64 0.01 45.53 3.01
1865 1998 6.294731 GCATTCATGTCTAAAAGACCACCTTT 60.295 38.462 4.69 0.00 44.44 3.11
1875 2009 3.703001 AGACCACCTTTCGATCATTGT 57.297 42.857 0.00 0.00 0.00 2.71
1876 2010 4.819105 AGACCACCTTTCGATCATTGTA 57.181 40.909 0.00 0.00 0.00 2.41
1900 2035 5.247084 TCCATTTGCATTTTCATCCAAAGG 58.753 37.500 0.00 0.00 31.57 3.11
1908 2043 4.577834 TTTTCATCCAAAGGTTCGTTCC 57.422 40.909 0.00 0.00 0.00 3.62
1991 2126 3.743521 CACAAGGGAGACTGATGAAACA 58.256 45.455 0.00 0.00 0.00 2.83
2031 2169 3.618780 CTGCAGGAGGGTGGAGCAC 62.619 68.421 5.57 0.00 0.00 4.40
2045 2183 4.220602 GGTGGAGCACAATTAGTTTCCATT 59.779 41.667 11.04 0.00 41.14 3.16
2062 2219 2.486982 CCATTCAAGTGAAGCAGAGTGG 59.513 50.000 0.00 0.00 37.48 4.00
2083 2240 2.956333 GTTTGCCTCTGTTACCCAAGTT 59.044 45.455 0.00 0.00 0.00 2.66
2090 2247 1.000274 CTGTTACCCAAGTTGCCAAGC 60.000 52.381 0.00 0.00 0.00 4.01
2100 2257 3.205784 AGTTGCCAAGCCTGATCTATC 57.794 47.619 0.00 0.00 0.00 2.08
2136 2370 5.878406 ACTAGAGATAACCCACCTGATTG 57.122 43.478 0.00 0.00 0.00 2.67
2183 2418 2.147958 GTTGAACGGTGCAGGATGTTA 58.852 47.619 0.00 0.00 39.31 2.41
2184 2419 2.747446 GTTGAACGGTGCAGGATGTTAT 59.253 45.455 0.00 0.00 39.31 1.89
2185 2420 3.897141 TGAACGGTGCAGGATGTTATA 57.103 42.857 0.00 0.00 39.31 0.98
2186 2421 4.415881 TGAACGGTGCAGGATGTTATAT 57.584 40.909 0.00 0.00 39.31 0.86
2187 2422 4.126437 TGAACGGTGCAGGATGTTATATG 58.874 43.478 0.00 0.00 39.31 1.78
2188 2423 2.494059 ACGGTGCAGGATGTTATATGC 58.506 47.619 0.00 0.00 39.31 3.14
2232 2467 4.988540 CGTGAAACCTCAGACAGTGAATTA 59.011 41.667 0.00 0.00 33.60 1.40
2300 2535 5.118664 ACATACACGATTCTTCTGTTGTTCG 59.881 40.000 0.00 0.00 0.00 3.95
2367 2602 5.567430 AGTTTAGATTACACAAAGACCCCC 58.433 41.667 0.00 0.00 0.00 5.40
2370 2605 4.463050 AGATTACACAAAGACCCCCAAA 57.537 40.909 0.00 0.00 0.00 3.28
2371 2606 4.149598 AGATTACACAAAGACCCCCAAAC 58.850 43.478 0.00 0.00 0.00 2.93
2372 2607 3.673543 TTACACAAAGACCCCCAAACT 57.326 42.857 0.00 0.00 0.00 2.66
2403 2641 0.036010 ATCCGAGCTTGTGGGTTGAG 60.036 55.000 0.00 0.00 0.00 3.02
2406 2644 2.281761 AGCTTGTGGGTTGAGGCG 60.282 61.111 0.00 0.00 0.00 5.52
2419 2657 1.442769 TGAGGCGATCACTCTTTTGC 58.557 50.000 13.65 0.00 35.98 3.68
2467 2705 1.477295 AGAAGGACCTTTCGTCGGATC 59.523 52.381 8.49 0.00 42.99 3.36
2494 2732 2.032528 CGACAGAAGGGCCTGCAA 59.967 61.111 15.67 0.00 37.68 4.08
2543 2781 0.682209 CCACTGATTTGGAGGGCAGG 60.682 60.000 0.00 0.00 39.24 4.85
2573 2811 1.077787 CCGCTGGCAAAGGGTCATA 60.078 57.895 0.32 0.00 37.13 2.15
2636 2874 4.340950 TCGTTCATGATATGAGCCACACTA 59.659 41.667 0.00 0.00 40.94 2.74
2657 2895 6.967767 CACTATTCGTGTAAATCTTCTCTCGT 59.032 38.462 0.00 0.00 38.84 4.18
2795 3033 5.346822 GTCCACAATAAAGAGCAATGCTTTG 59.653 40.000 9.91 11.97 39.88 2.77
2807 3045 1.753930 ATGCTTTGCGGATGTCATCA 58.246 45.000 14.72 0.00 0.00 3.07
2846 3084 4.989279 AAAGCAATAATTGGCGTCAGAT 57.011 36.364 0.00 0.00 34.54 2.90
2850 3088 5.308014 AGCAATAATTGGCGTCAGATATGA 58.692 37.500 0.00 0.00 34.54 2.15
2859 3097 3.490933 GGCGTCAGATATGACAAGCAGTA 60.491 47.826 19.79 0.00 38.65 2.74
2860 3098 3.733224 GCGTCAGATATGACAAGCAGTAG 59.267 47.826 19.79 2.75 38.65 2.57
2861 3099 4.294232 CGTCAGATATGACAAGCAGTAGG 58.706 47.826 19.79 0.00 38.65 3.18
2873 3111 1.118838 GCAGTAGGCAGTCAGGAGAT 58.881 55.000 0.00 0.00 43.97 2.75
2884 3122 4.437239 CAGTCAGGAGATGGTCAACATAC 58.563 47.826 0.00 0.00 40.72 2.39
2895 3133 3.457749 TGGTCAACATACCATAGGCATGA 59.542 43.478 0.00 0.00 44.68 3.07
2898 3136 5.359576 GGTCAACATACCATAGGCATGAAAA 59.640 40.000 0.00 0.00 39.50 2.29
2902 3140 7.831690 TCAACATACCATAGGCATGAAAAGTAA 59.168 33.333 0.00 0.00 33.67 2.24
2944 3182 7.392418 ACATTCTTCAGAATTGAGATGTGAGA 58.608 34.615 0.00 0.00 42.41 3.27
2973 3211 5.990120 ATTCAGCATAAGCAGGTTCTTTT 57.010 34.783 0.00 0.00 45.49 2.27
2981 3219 7.066766 AGCATAAGCAGGTTCTTTTATGAGAAG 59.933 37.037 7.13 0.00 45.49 2.85
2982 3220 7.148171 GCATAAGCAGGTTCTTTTATGAGAAGT 60.148 37.037 7.13 0.00 41.58 3.01
2983 3221 9.383519 CATAAGCAGGTTCTTTTATGAGAAGTA 57.616 33.333 0.00 0.00 36.39 2.24
2984 3222 9.959721 ATAAGCAGGTTCTTTTATGAGAAGTAA 57.040 29.630 0.00 0.00 36.39 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.432350 AAGAGATGCTACAAGAAAGTTTCTG 57.568 36.000 18.70 14.30 40.59 3.02
58 59 1.438651 GAGACGCCACAAATACAGCA 58.561 50.000 0.00 0.00 0.00 4.41
63 64 2.004583 CGAAGGAGACGCCACAAATA 57.995 50.000 0.00 0.00 40.02 1.40
85 86 6.533012 CACCAGTTCTCATACTGTCATACAAG 59.467 42.308 0.00 0.00 43.17 3.16
109 110 1.827789 GTCTGCCAACCCAAGTGCA 60.828 57.895 0.00 0.00 0.00 4.57
114 115 2.203480 GCCAGTCTGCCAACCCAA 60.203 61.111 0.00 0.00 0.00 4.12
115 116 3.177884 AGCCAGTCTGCCAACCCA 61.178 61.111 0.00 0.00 0.00 4.51
116 117 2.674380 CAGCCAGTCTGCCAACCC 60.674 66.667 0.00 0.00 35.78 4.11
260 294 4.219033 GCTTTCAAGTACACAATTCCACG 58.781 43.478 0.00 0.00 0.00 4.94
269 303 3.877508 ACAGAAGGTGCTTTCAAGTACAC 59.122 43.478 9.61 0.52 42.49 2.90
278 312 2.057137 TCTGCAACAGAAGGTGCTTT 57.943 45.000 7.07 0.00 37.57 3.51
315 349 1.446792 ACGCTGATGAACGCCTGAG 60.447 57.895 0.00 0.00 0.00 3.35
339 373 3.364277 GCTCGTTTACTAGCCCCAG 57.636 57.895 0.00 0.00 32.40 4.45
524 592 3.379240 CAGTAACGATCATGGCAGAGAG 58.621 50.000 0.00 0.00 0.00 3.20
525 593 2.481969 GCAGTAACGATCATGGCAGAGA 60.482 50.000 0.00 0.00 0.00 3.10
526 594 1.863454 GCAGTAACGATCATGGCAGAG 59.137 52.381 0.00 0.00 0.00 3.35
527 595 1.802508 CGCAGTAACGATCATGGCAGA 60.803 52.381 0.00 0.00 34.06 4.26
636 704 2.701423 GGGAGGGTCTAGGAACAATCTC 59.299 54.545 0.00 0.00 0.00 2.75
708 780 0.457166 CCATGAAACCATGCACAGCG 60.457 55.000 0.00 0.00 39.96 5.18
749 821 0.179200 GTTGGCGTTGCAATCGGTAG 60.179 55.000 18.46 3.14 0.00 3.18
751 823 2.190170 TGTTGGCGTTGCAATCGGT 61.190 52.632 18.46 0.00 0.00 4.69
753 825 0.998226 CAGTGTTGGCGTTGCAATCG 60.998 55.000 0.59 9.69 0.00 3.34
794 866 1.614241 CGTCCTCTTGGGGTGGGTAG 61.614 65.000 0.00 0.00 35.33 3.18
795 867 1.611261 CGTCCTCTTGGGGTGGGTA 60.611 63.158 0.00 0.00 35.33 3.69
796 868 2.928396 CGTCCTCTTGGGGTGGGT 60.928 66.667 0.00 0.00 35.33 4.51
801 873 1.301716 CACACACGTCCTCTTGGGG 60.302 63.158 0.00 0.00 35.33 4.96
802 874 0.880278 CACACACACGTCCTCTTGGG 60.880 60.000 0.00 0.00 0.00 4.12
803 875 0.179084 ACACACACACGTCCTCTTGG 60.179 55.000 0.00 0.00 0.00 3.61
804 876 0.930310 CACACACACACGTCCTCTTG 59.070 55.000 0.00 0.00 0.00 3.02
805 877 0.535335 ACACACACACACGTCCTCTT 59.465 50.000 0.00 0.00 0.00 2.85
806 878 0.179111 CACACACACACACGTCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
807 879 0.459585 ACACACACACACACGTCCTC 60.460 55.000 0.00 0.00 0.00 3.71
808 880 0.739462 CACACACACACACACGTCCT 60.739 55.000 0.00 0.00 0.00 3.85
809 881 1.017177 ACACACACACACACACGTCC 61.017 55.000 0.00 0.00 0.00 4.79
810 882 0.094558 CACACACACACACACACGTC 59.905 55.000 0.00 0.00 0.00 4.34
811 883 0.601576 ACACACACACACACACACGT 60.602 50.000 0.00 0.00 0.00 4.49
812 884 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
813 885 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
814 886 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
815 887 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
816 888 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
817 889 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
818 890 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
819 891 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
820 892 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
821 893 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
822 894 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
823 895 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
824 896 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
825 897 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
826 898 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
827 899 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
828 900 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
829 901 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
830 902 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
831 903 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
832 904 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
833 905 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
834 906 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
835 907 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
836 908 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
837 909 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
838 910 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
839 911 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
840 912 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
841 913 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
842 914 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
843 915 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
844 916 0.035458 TCCACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72
845 917 0.726827 CTCCACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
846 918 0.610687 TCTCCACACACACACACACA 59.389 50.000 0.00 0.00 0.00 3.72
847 919 1.953559 ATCTCCACACACACACACAC 58.046 50.000 0.00 0.00 0.00 3.82
848 920 3.828875 TTATCTCCACACACACACACA 57.171 42.857 0.00 0.00 0.00 3.72
849 921 4.515191 ACATTTATCTCCACACACACACAC 59.485 41.667 0.00 0.00 0.00 3.82
850 922 4.713553 ACATTTATCTCCACACACACACA 58.286 39.130 0.00 0.00 0.00 3.72
851 923 5.451908 CAACATTTATCTCCACACACACAC 58.548 41.667 0.00 0.00 0.00 3.82
852 924 4.518590 CCAACATTTATCTCCACACACACA 59.481 41.667 0.00 0.00 0.00 3.72
853 925 4.759693 TCCAACATTTATCTCCACACACAC 59.240 41.667 0.00 0.00 0.00 3.82
854 926 4.979335 TCCAACATTTATCTCCACACACA 58.021 39.130 0.00 0.00 0.00 3.72
855 927 6.515272 AATCCAACATTTATCTCCACACAC 57.485 37.500 0.00 0.00 0.00 3.82
856 928 6.318648 GCTAATCCAACATTTATCTCCACACA 59.681 38.462 0.00 0.00 0.00 3.72
857 929 6.238759 GGCTAATCCAACATTTATCTCCACAC 60.239 42.308 0.00 0.00 34.01 3.82
858 930 5.827797 GGCTAATCCAACATTTATCTCCACA 59.172 40.000 0.00 0.00 34.01 4.17
859 931 5.827797 TGGCTAATCCAACATTTATCTCCAC 59.172 40.000 0.00 0.00 43.21 4.02
860 932 6.012337 TGGCTAATCCAACATTTATCTCCA 57.988 37.500 0.00 0.00 43.21 3.86
899 987 0.736325 ATAGGCACGACACGAGCAAC 60.736 55.000 14.13 0.14 44.45 4.17
901 989 0.812549 TTATAGGCACGACACGAGCA 59.187 50.000 14.13 0.00 44.45 4.26
902 990 1.587034 GTTTATAGGCACGACACGAGC 59.413 52.381 5.16 5.16 42.19 5.03
903 991 2.852413 CAGTTTATAGGCACGACACGAG 59.148 50.000 0.00 0.00 0.00 4.18
905 993 1.323534 GCAGTTTATAGGCACGACACG 59.676 52.381 0.00 0.00 0.00 4.49
908 996 0.928229 CCGCAGTTTATAGGCACGAC 59.072 55.000 0.00 0.00 0.00 4.34
1067 1158 1.901591 CAAGATGGTGGTGCAGAACT 58.098 50.000 0.00 0.00 0.00 3.01
1102 1193 4.821589 GGGACGAGAGCCAAGCGG 62.822 72.222 0.00 0.00 0.00 5.52
1103 1194 3.376935 ATGGGACGAGAGCCAAGCG 62.377 63.158 0.00 0.00 0.00 4.68
1107 1198 2.710902 CGTGATGGGACGAGAGCCA 61.711 63.158 0.00 0.00 42.10 4.75
1108 1199 2.105128 CGTGATGGGACGAGAGCC 59.895 66.667 0.00 0.00 42.10 4.70
1109 1200 2.105128 CCGTGATGGGACGAGAGC 59.895 66.667 0.00 0.00 42.10 4.09
1118 1209 1.742880 CTCCTGCACACCGTGATGG 60.743 63.158 5.28 1.97 46.41 3.51
1120 1211 2.046892 GCTCCTGCACACCGTGAT 60.047 61.111 5.28 0.00 39.41 3.06
1145 1240 1.814394 TCACCTGCACGTACGTCTAAT 59.186 47.619 19.94 0.01 0.00 1.73
1146 1241 1.198408 CTCACCTGCACGTACGTCTAA 59.802 52.381 19.94 5.98 0.00 2.10
1147 1242 0.800631 CTCACCTGCACGTACGTCTA 59.199 55.000 19.94 9.44 0.00 2.59
1148 1243 1.579932 CTCACCTGCACGTACGTCT 59.420 57.895 19.94 0.00 0.00 4.18
1149 1244 2.087009 GCTCACCTGCACGTACGTC 61.087 63.158 19.94 13.82 0.00 4.34
1150 1245 2.049433 GCTCACCTGCACGTACGT 60.049 61.111 16.72 16.72 0.00 3.57
1239 1342 2.610859 GGAGGGGGAGAAGCCACA 60.611 66.667 0.00 0.00 44.24 4.17
1304 1407 3.620821 GCAAAGCAACTTGGTAAGCAAAA 59.379 39.130 10.86 0.00 31.16 2.44
1305 1408 3.194062 GCAAAGCAACTTGGTAAGCAAA 58.806 40.909 10.86 0.00 31.16 3.68
1306 1409 2.167281 TGCAAAGCAACTTGGTAAGCAA 59.833 40.909 14.38 0.00 35.75 3.91
1336 1439 4.617762 GCGTACAATGCCCTACTCCTATAC 60.618 50.000 0.00 0.00 0.00 1.47
1343 1449 1.066605 CGTAGCGTACAATGCCCTACT 59.933 52.381 0.00 0.00 0.00 2.57
1360 1466 1.730064 GCTGAAAAGAACCATCGCGTA 59.270 47.619 5.77 0.00 0.00 4.42
1361 1467 0.517316 GCTGAAAAGAACCATCGCGT 59.483 50.000 5.77 0.00 0.00 6.01
1362 1468 0.798776 AGCTGAAAAGAACCATCGCG 59.201 50.000 0.00 0.00 0.00 5.87
1363 1469 2.226437 TGAAGCTGAAAAGAACCATCGC 59.774 45.455 0.00 0.00 0.00 4.58
1364 1470 4.023707 AGTTGAAGCTGAAAAGAACCATCG 60.024 41.667 0.00 0.00 0.00 3.84
1365 1471 5.218139 CAGTTGAAGCTGAAAAGAACCATC 58.782 41.667 0.00 0.00 38.70 3.51
1369 1475 7.041372 TGGTATACAGTTGAAGCTGAAAAGAAC 60.041 37.037 5.01 0.00 39.62 3.01
1400 1506 2.674380 CTGTTCCACCAGGCAGGC 60.674 66.667 0.00 0.00 43.14 4.85
1480 1589 2.362503 TCCCAGTCGCCGTCATCT 60.363 61.111 0.00 0.00 0.00 2.90
1481 1590 2.105128 CTCCCAGTCGCCGTCATC 59.895 66.667 0.00 0.00 0.00 2.92
1482 1591 3.461773 CCTCCCAGTCGCCGTCAT 61.462 66.667 0.00 0.00 0.00 3.06
1509 1618 1.739562 GCAGTGGCACTCTTCTCCG 60.740 63.158 19.13 5.81 40.72 4.63
1543 1652 4.275196 AGAAGAAAAGACGGGTAAGTTTGC 59.725 41.667 0.00 0.00 0.00 3.68
1678 1787 1.860676 CAAATGGTATGGCTGCATGC 58.139 50.000 11.82 11.82 41.94 4.06
1679 1788 1.539496 GGCAAATGGTATGGCTGCATG 60.539 52.381 0.50 0.00 39.99 4.06
1680 1789 0.754472 GGCAAATGGTATGGCTGCAT 59.246 50.000 0.50 0.00 39.99 3.96
1681 1790 0.614134 TGGCAAATGGTATGGCTGCA 60.614 50.000 0.50 0.00 43.24 4.41
1682 1791 0.536260 TTGGCAAATGGTATGGCTGC 59.464 50.000 0.00 0.00 43.24 5.25
1683 1792 2.028294 TGTTTGGCAAATGGTATGGCTG 60.028 45.455 16.74 0.00 43.24 4.85
1684 1793 2.255406 TGTTTGGCAAATGGTATGGCT 58.745 42.857 16.74 0.00 43.24 4.75
1685 1794 2.758736 TGTTTGGCAAATGGTATGGC 57.241 45.000 16.74 0.94 43.15 4.40
1686 1795 5.123661 GGAAAATGTTTGGCAAATGGTATGG 59.876 40.000 16.74 0.00 0.00 2.74
1687 1796 5.939296 AGGAAAATGTTTGGCAAATGGTATG 59.061 36.000 16.74 0.00 0.00 2.39
1688 1797 5.939296 CAGGAAAATGTTTGGCAAATGGTAT 59.061 36.000 16.74 6.11 0.00 2.73
1689 1798 5.163258 ACAGGAAAATGTTTGGCAAATGGTA 60.163 36.000 16.74 3.97 0.00 3.25
1690 1799 4.136051 CAGGAAAATGTTTGGCAAATGGT 58.864 39.130 16.74 2.50 0.00 3.55
1691 1800 4.023878 CACAGGAAAATGTTTGGCAAATGG 60.024 41.667 16.74 1.41 0.00 3.16
1692 1801 4.815308 TCACAGGAAAATGTTTGGCAAATG 59.185 37.500 16.74 9.90 0.00 2.32
1693 1802 5.033589 TCACAGGAAAATGTTTGGCAAAT 57.966 34.783 16.74 0.00 0.00 2.32
1702 1811 3.508793 CATTGCCTCTCACAGGAAAATGT 59.491 43.478 0.00 0.00 44.01 2.71
1704 1813 3.094572 CCATTGCCTCTCACAGGAAAAT 58.905 45.455 0.00 0.00 44.01 1.82
1738 1866 4.142026 CCCTGAGAACATGGTGAATACGTA 60.142 45.833 0.00 0.00 0.00 3.57
1739 1867 3.369471 CCCTGAGAACATGGTGAATACGT 60.369 47.826 0.00 0.00 0.00 3.57
1740 1868 3.118775 TCCCTGAGAACATGGTGAATACG 60.119 47.826 0.00 0.00 34.26 3.06
1741 1869 4.487714 TCCCTGAGAACATGGTGAATAC 57.512 45.455 0.00 0.00 34.26 1.89
1852 1980 4.827284 ACAATGATCGAAAGGTGGTCTTTT 59.173 37.500 0.00 0.00 45.00 2.27
1855 1983 3.703001 ACAATGATCGAAAGGTGGTCT 57.297 42.857 0.00 0.00 0.00 3.85
1856 1984 4.511826 GGATACAATGATCGAAAGGTGGTC 59.488 45.833 0.00 0.00 0.00 4.02
1875 2009 7.049133 CCTTTGGATGAAAATGCAAATGGATA 58.951 34.615 5.95 0.00 40.24 2.59
1876 2010 5.883673 CCTTTGGATGAAAATGCAAATGGAT 59.116 36.000 5.95 0.00 40.24 3.41
1900 2035 4.561735 TTTCCAAATCACAGGAACGAAC 57.438 40.909 0.00 0.00 43.23 3.95
2024 2162 5.076182 TGAATGGAAACTAATTGTGCTCCA 58.924 37.500 11.24 11.24 42.27 3.86
2031 2169 7.147312 TGCTTCACTTGAATGGAAACTAATTG 58.853 34.615 0.00 0.00 33.01 2.32
2045 2183 2.945008 CAAACCACTCTGCTTCACTTGA 59.055 45.455 0.00 0.00 0.00 3.02
2062 2219 2.583143 ACTTGGGTAACAGAGGCAAAC 58.417 47.619 0.00 0.00 39.74 2.93
2083 2240 1.419012 CAGGATAGATCAGGCTTGGCA 59.581 52.381 0.00 0.00 0.00 4.92
2090 2247 5.804944 ATGTTCTCACAGGATAGATCAGG 57.195 43.478 0.00 0.00 35.94 3.86
2100 2257 8.138712 GGTTATCTCTAGTTATGTTCTCACAGG 58.861 40.741 0.00 0.00 35.94 4.00
2184 2419 9.777575 CGAAATCAGATTATAATTGCATGCATA 57.222 29.630 23.37 12.62 0.00 3.14
2185 2420 8.301720 ACGAAATCAGATTATAATTGCATGCAT 58.698 29.630 23.37 10.46 0.00 3.96
2186 2421 7.592164 CACGAAATCAGATTATAATTGCATGCA 59.408 33.333 18.46 18.46 0.00 3.96
2187 2422 7.804600 TCACGAAATCAGATTATAATTGCATGC 59.195 33.333 11.82 11.82 0.00 4.06
2188 2423 9.667989 TTCACGAAATCAGATTATAATTGCATG 57.332 29.630 0.00 0.00 0.00 4.06
2201 2436 4.202212 TGTCTGAGGTTTCACGAAATCAGA 60.202 41.667 16.44 16.44 40.90 3.27
2269 2504 7.375834 ACAGAAGAATCGTGTATGTTAGTCAA 58.624 34.615 0.00 0.00 0.00 3.18
2283 2518 1.201812 CGCCGAACAACAGAAGAATCG 60.202 52.381 0.00 0.00 0.00 3.34
2300 2535 3.907894 TTCCATTTTTGTACTGACGCC 57.092 42.857 0.00 0.00 0.00 5.68
2367 2602 5.569059 GCTCGGATCACAAATACAAAGTTTG 59.431 40.000 14.13 14.13 41.22 2.93
2370 2605 4.579869 AGCTCGGATCACAAATACAAAGT 58.420 39.130 0.00 0.00 0.00 2.66
2371 2606 5.106555 ACAAGCTCGGATCACAAATACAAAG 60.107 40.000 0.00 0.00 0.00 2.77
2372 2607 4.759693 ACAAGCTCGGATCACAAATACAAA 59.240 37.500 0.00 0.00 0.00 2.83
2403 2641 0.179179 GCAGCAAAAGAGTGATCGCC 60.179 55.000 1.76 0.00 0.00 5.54
2406 2644 1.135460 GCCAGCAGCAAAAGAGTGATC 60.135 52.381 0.00 0.00 42.97 2.92
2480 2718 1.073722 TGACTTGCAGGCCCTTCTG 59.926 57.895 0.00 0.00 37.79 3.02
2494 2732 0.038744 CCTGGCAAATGGGAGTGACT 59.961 55.000 0.00 0.00 0.00 3.41
2573 2811 2.093764 CCTTCAGTCGATCAAGAGGCTT 60.094 50.000 0.00 0.00 0.00 4.35
2636 2874 4.563184 GCACGAGAGAAGATTTACACGAAT 59.437 41.667 0.00 0.00 0.00 3.34
2795 3033 1.936547 GTTCTTCCTGATGACATCCGC 59.063 52.381 12.90 0.00 0.00 5.54
2825 3063 4.989279 ATCTGACGCCAATTATTGCTTT 57.011 36.364 0.00 0.00 0.00 3.51
2846 3084 2.831526 TGACTGCCTACTGCTTGTCATA 59.168 45.455 8.60 0.00 43.62 2.15
2850 3088 0.322975 CCTGACTGCCTACTGCTTGT 59.677 55.000 0.00 0.00 42.00 3.16
2859 3097 0.252421 TGACCATCTCCTGACTGCCT 60.252 55.000 0.00 0.00 0.00 4.75
2860 3098 0.615331 TTGACCATCTCCTGACTGCC 59.385 55.000 0.00 0.00 0.00 4.85
2861 3099 1.002430 TGTTGACCATCTCCTGACTGC 59.998 52.381 0.00 0.00 0.00 4.40
2884 3122 9.868277 TTTATGTTTTACTTTTCATGCCTATGG 57.132 29.630 0.00 0.00 34.97 2.74
2922 3160 8.098912 TGATTCTCACATCTCAATTCTGAAGAA 58.901 33.333 0.00 0.00 38.56 2.52
2944 3182 4.708421 ACCTGCTTATGCTGAATTGTGATT 59.292 37.500 8.78 0.00 40.01 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.