Multiple sequence alignment - TraesCS2B01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G224600 chr2B 100.000 5236 0 0 1 5236 214529721 214534956 0.000000e+00 9670.0
1 TraesCS2B01G224600 chr2B 92.381 105 5 3 3059 3161 790112932 790113035 4.230000e-31 147.0
2 TraesCS2B01G224600 chr2A 89.301 2131 125 57 3151 5236 166827837 166829909 0.000000e+00 2577.0
3 TraesCS2B01G224600 chr2A 93.938 1633 59 12 847 2457 166825568 166827182 0.000000e+00 2431.0
4 TraesCS2B01G224600 chr2A 88.019 626 39 10 2465 3069 166827228 166827838 0.000000e+00 708.0
5 TraesCS2B01G224600 chr2A 100.000 32 0 0 1517 1548 16327267 16327298 5.660000e-05 60.2
6 TraesCS2B01G224600 chr2D 94.689 1657 65 12 822 2457 157014664 157016318 0.000000e+00 2551.0
7 TraesCS2B01G224600 chr2D 91.436 1191 81 15 3151 4335 157016976 157018151 0.000000e+00 1615.0
8 TraesCS2B01G224600 chr2D 84.673 933 59 33 4335 5236 157018228 157019107 0.000000e+00 854.0
9 TraesCS2B01G224600 chr2D 88.253 647 40 13 2446 3069 157016344 157016977 0.000000e+00 741.0
10 TraesCS2B01G224600 chr5B 91.074 605 37 3 218 822 544805069 544804482 0.000000e+00 802.0
11 TraesCS2B01G224600 chr5B 95.333 150 7 0 1 150 544805203 544805054 6.780000e-59 239.0
12 TraesCS2B01G224600 chr5D 87.739 628 68 5 197 823 486292927 486292308 0.000000e+00 725.0
13 TraesCS2B01G224600 chr5A 83.725 639 77 14 197 822 540041349 540041973 3.520000e-161 579.0
14 TraesCS2B01G224600 chr7D 78.871 620 96 24 234 825 501663054 501662442 2.290000e-103 387.0
15 TraesCS2B01G224600 chr7D 80.368 489 79 12 344 822 416257312 416257793 6.450000e-94 355.0
16 TraesCS2B01G224600 chr7D 79.538 303 52 8 523 822 573954706 573954411 1.910000e-49 207.0
17 TraesCS2B01G224600 chr7D 80.874 183 30 5 638 818 102574646 102574825 7.070000e-29 139.0
18 TraesCS2B01G224600 chr3D 80.658 486 77 12 344 820 610338621 610338144 1.390000e-95 361.0
19 TraesCS2B01G224600 chr3D 82.979 282 36 7 203 480 165452991 165453264 1.460000e-60 244.0
20 TraesCS2B01G224600 chr3D 94.792 96 4 1 3065 3159 144071934 144072029 1.170000e-31 148.0
21 TraesCS2B01G224600 chr1A 82.670 427 51 11 197 611 436250809 436250394 1.790000e-94 357.0
22 TraesCS2B01G224600 chr1A 82.424 165 27 2 658 822 74278243 74278081 5.470000e-30 143.0
23 TraesCS2B01G224600 chr6B 82.594 293 46 3 199 490 695779867 695779579 2.420000e-63 254.0
24 TraesCS2B01G224600 chr6A 82.353 289 44 5 196 482 11867557 11867840 1.460000e-60 244.0
25 TraesCS2B01G224600 chr1B 82.447 188 25 8 2 188 49561536 49561716 1.950000e-34 158.0
26 TraesCS2B01G224600 chr1B 89.815 108 11 0 3058 3165 466926149 466926256 7.070000e-29 139.0
27 TraesCS2B01G224600 chr1B 78.756 193 37 4 634 825 52147787 52147976 5.500000e-25 126.0
28 TraesCS2B01G224600 chr3B 96.667 90 3 0 3065 3154 11069996 11070085 3.270000e-32 150.0
29 TraesCS2B01G224600 chr3B 96.667 90 3 0 3063 3152 200860678 200860767 3.270000e-32 150.0
30 TraesCS2B01G224600 chr7B 94.737 95 5 0 3058 3152 747110351 747110257 1.170000e-31 148.0
31 TraesCS2B01G224600 chr7B 95.556 90 4 0 3064 3153 84214184 84214273 1.520000e-30 145.0
32 TraesCS2B01G224600 chr6D 95.652 92 4 0 3061 3152 120647228 120647319 1.170000e-31 148.0
33 TraesCS2B01G224600 chr4D 94.681 94 5 0 3064 3157 303079346 303079253 4.230000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G224600 chr2B 214529721 214534956 5235 False 9670.000000 9670 100.000000 1 5236 1 chr2B.!!$F1 5235
1 TraesCS2B01G224600 chr2A 166825568 166829909 4341 False 1905.333333 2577 90.419333 847 5236 3 chr2A.!!$F2 4389
2 TraesCS2B01G224600 chr2D 157014664 157019107 4443 False 1440.250000 2551 89.762750 822 5236 4 chr2D.!!$F1 4414
3 TraesCS2B01G224600 chr5B 544804482 544805203 721 True 520.500000 802 93.203500 1 822 2 chr5B.!!$R1 821
4 TraesCS2B01G224600 chr5D 486292308 486292927 619 True 725.000000 725 87.739000 197 823 1 chr5D.!!$R1 626
5 TraesCS2B01G224600 chr5A 540041349 540041973 624 False 579.000000 579 83.725000 197 822 1 chr5A.!!$F1 625
6 TraesCS2B01G224600 chr7D 501662442 501663054 612 True 387.000000 387 78.871000 234 825 1 chr7D.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 728 1.039856 AAACACGCTTTGGGCTGATT 58.960 45.0 0.0 0.0 39.13 2.57 F
1629 1676 0.324943 GTGTAGGTGCTGGTGATGGT 59.675 55.0 0.0 0.0 0.00 3.55 F
2052 2099 0.025898 CAGTGATGCTTGCGATGACG 59.974 55.0 0.0 0.0 42.93 4.35 F
3958 4090 0.038744 CCTGGCAAATGGGAGTGACT 59.961 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2080 0.025898 CGTCATCGCAAGCATCACTG 59.974 55.0 0.0 0.0 37.18 3.66 R
3260 3391 0.176680 AGAAGCCAGAGTGTATGCCG 59.823 55.0 0.0 0.0 0.00 5.69 R
4049 4181 0.036010 ATCCGAGCTTGTGGGTTGAG 60.036 55.0 0.0 0.0 0.00 3.02 R
5088 5336 0.249155 TAGGGCATTGTACGCTACGC 60.249 55.0 0.0 0.0 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.697751 GCCTTCTCAGAGCAAGAGGATA 59.302 50.000 11.16 0.00 33.92 2.59
123 124 2.230992 CTCAGAGCAAGAGGATATCCCG 59.769 54.545 18.56 5.97 40.87 5.14
142 143 3.303135 AGCTCCAAGACGTCGCCA 61.303 61.111 10.46 0.00 0.00 5.69
150 151 4.487412 GACGTCGCCACCCCGTAG 62.487 72.222 0.00 0.00 34.51 3.51
501 534 4.925861 GCCCCCTGCATCGAGCTC 62.926 72.222 2.73 2.73 45.94 4.09
684 728 1.039856 AAACACGCTTTGGGCTGATT 58.960 45.000 0.00 0.00 39.13 2.57
724 768 4.638421 CGGTTAGATCAAATTAAGTGGCCA 59.362 41.667 0.00 0.00 0.00 5.36
740 784 1.156645 GCCATGATCGTGAGGCTGTC 61.157 60.000 16.77 0.00 43.70 3.51
775 819 3.510753 TGTTATGTGTACGTTAGGCTGGA 59.489 43.478 0.00 0.00 0.00 3.86
804 848 3.699067 AGCGATGAATATGTTTGCTTGC 58.301 40.909 0.00 0.00 0.00 4.01
833 877 9.833917 AATAGTAAGTATAGAAAACCTGGCTTC 57.166 33.333 0.00 0.00 0.00 3.86
835 879 7.557724 AGTAAGTATAGAAAACCTGGCTTCTC 58.442 38.462 13.31 2.74 33.89 2.87
842 886 1.204113 AACCTGGCTTCTCCCCTGAG 61.204 60.000 0.00 0.00 40.17 3.35
947 993 1.822990 TCAGGAGTATTCCCGTGTCAC 59.177 52.381 0.00 0.00 45.24 3.67
951 997 3.263425 AGGAGTATTCCCGTGTCACAAAT 59.737 43.478 3.42 2.61 45.24 2.32
994 1041 1.202663 CCTCTATCTCCGTCTCCGTCA 60.203 57.143 0.00 0.00 0.00 4.35
1169 1216 4.883354 CCAGATCCCCGCCAAGGC 62.883 72.222 0.00 0.00 39.21 4.35
1198 1245 2.204151 CCACCCCCAACTCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
1395 1442 3.982372 GAACGAGGTCATGCGGCGA 62.982 63.158 12.98 0.00 0.00 5.54
1482 1529 2.125912 CTCGTGCTCAAGTCCGGG 60.126 66.667 0.00 0.00 0.00 5.73
1629 1676 0.324943 GTGTAGGTGCTGGTGATGGT 59.675 55.000 0.00 0.00 0.00 3.55
1956 2003 0.947244 GGTGTTCTGTCAGCTGGTTG 59.053 55.000 15.13 4.16 33.69 3.77
2025 2072 2.107378 TGTGCAAGAGTGGGGTGAATTA 59.893 45.455 0.00 0.00 0.00 1.40
2028 2075 2.945890 GCAAGAGTGGGGTGAATTAGGG 60.946 54.545 0.00 0.00 0.00 3.53
2032 2079 4.180723 AGAGTGGGGTGAATTAGGGTTTA 58.819 43.478 0.00 0.00 0.00 2.01
2033 2080 4.018688 AGAGTGGGGTGAATTAGGGTTTAC 60.019 45.833 0.00 0.00 0.00 2.01
2035 2082 4.014406 GTGGGGTGAATTAGGGTTTACAG 58.986 47.826 0.00 0.00 0.00 2.74
2052 2099 0.025898 CAGTGATGCTTGCGATGACG 59.974 55.000 0.00 0.00 42.93 4.35
2059 2106 0.443869 GCTTGCGATGACGTGATGTT 59.556 50.000 0.00 0.00 41.98 2.71
2105 2152 5.404946 GGTAAAGTGACGAGTGCTATTGTA 58.595 41.667 0.00 0.00 0.00 2.41
2106 2153 5.515626 GGTAAAGTGACGAGTGCTATTGTAG 59.484 44.000 0.00 0.00 0.00 2.74
2107 2154 3.784701 AGTGACGAGTGCTATTGTAGG 57.215 47.619 0.00 0.00 0.00 3.18
2108 2155 3.353557 AGTGACGAGTGCTATTGTAGGA 58.646 45.455 0.00 0.00 0.00 2.94
2109 2156 3.128938 AGTGACGAGTGCTATTGTAGGAC 59.871 47.826 0.00 0.97 46.12 3.85
2169 2220 7.537596 TGACATCCAATACATTTCAACCTTT 57.462 32.000 0.00 0.00 0.00 3.11
2182 2233 6.723298 TTTCAACCTTTTGCTCAAATCCTA 57.277 33.333 0.00 0.00 32.17 2.94
2205 2256 0.108945 GGTTCTTGCATTGCAGCCTC 60.109 55.000 11.76 4.71 40.61 4.70
2208 2259 1.330234 TCTTGCATTGCAGCCTCAAA 58.670 45.000 11.76 0.00 40.61 2.69
2214 2265 2.680577 CATTGCAGCCTCAAAAAGTCC 58.319 47.619 0.00 0.00 0.00 3.85
2227 2278 7.175119 GCCTCAAAAAGTCCTAGAGTATTTTGT 59.825 37.037 16.32 0.00 38.34 2.83
2252 2303 7.830099 AAAGGAAAACTGATCAAAGAGATGT 57.170 32.000 0.00 0.00 37.00 3.06
2262 2313 7.094890 ACTGATCAAAGAGATGTTCATTGTCAC 60.095 37.037 0.00 0.00 37.00 3.67
2312 2364 9.219603 CATGTATACCCAGACTAAATAATGGTG 57.780 37.037 0.00 0.00 0.00 4.17
2358 2418 7.468752 TTATTAAGGAAAAGGGGCCTACATA 57.531 36.000 0.84 0.00 33.20 2.29
2367 2427 2.157942 AGGGGCCTACATATGGTCATCT 60.158 50.000 7.80 0.00 0.00 2.90
2386 2446 7.308229 GGTCATCTGTTGAATGTAATGATAGCC 60.308 40.741 0.00 0.00 35.70 3.93
2421 2481 4.691860 AGTCATCTAATGTTTGTGCTGC 57.308 40.909 0.00 0.00 0.00 5.25
2449 2516 7.888546 ACCTGGCTGTATTTACATAGTTTCTTT 59.111 33.333 0.00 0.00 35.36 2.52
2463 2530 8.576442 ACATAGTTTCTTTTGACCATGTAAAGG 58.424 33.333 0.00 0.00 31.45 3.11
2472 2577 3.193267 TGACCATGTAAAGGCATTTGCTC 59.807 43.478 12.95 3.18 41.70 4.26
2500 2605 8.035394 AGATTCAACGAAGCTTATGAACTTCTA 58.965 33.333 18.60 2.70 34.46 2.10
2501 2606 8.723942 ATTCAACGAAGCTTATGAACTTCTAT 57.276 30.769 18.60 5.05 40.12 1.98
2502 2607 8.547967 TTCAACGAAGCTTATGAACTTCTATT 57.452 30.769 14.46 0.00 40.12 1.73
2503 2608 9.647797 TTCAACGAAGCTTATGAACTTCTATTA 57.352 29.630 14.46 0.00 40.12 0.98
2504 2609 9.817809 TCAACGAAGCTTATGAACTTCTATTAT 57.182 29.630 0.00 0.00 40.12 1.28
2544 2650 5.046014 AGTGCCAGAGGATCACATATATTCC 60.046 44.000 0.00 0.00 37.82 3.01
2547 2653 5.569630 GCCAGAGGATCACATATATTCCGTT 60.570 44.000 0.00 0.00 37.82 4.44
2651 2757 5.865085 TGTTGCTTCCTAGTTAGTGTGATT 58.135 37.500 0.00 0.00 0.00 2.57
2661 2767 9.085645 TCCTAGTTAGTGTGATTCTAAACTTGA 57.914 33.333 0.00 0.00 0.00 3.02
2676 2795 8.129161 TCTAAACTTGATTTTGCACAACATTG 57.871 30.769 0.00 0.00 0.00 2.82
2697 2816 7.720957 ACATTGTTGCATCTGCTCCTTTATATA 59.279 33.333 3.53 0.00 42.66 0.86
2705 2824 8.449397 GCATCTGCTCCTTTATATATGTTTCAG 58.551 37.037 0.00 0.00 38.21 3.02
2747 2866 6.548171 TGTTTTGTTGTTACTTCTGCACTAC 58.452 36.000 0.00 0.00 0.00 2.73
2842 2964 8.248904 TGTATGCTGGATAGGCAAATTAAAAT 57.751 30.769 0.00 0.00 43.14 1.82
2843 2965 8.703743 TGTATGCTGGATAGGCAAATTAAAATT 58.296 29.630 0.00 0.00 43.14 1.82
2886 3011 5.675684 TGAGTCATGACTATGCTTGGTAA 57.324 39.130 27.95 1.97 42.66 2.85
2888 3013 6.653020 TGAGTCATGACTATGCTTGGTAATT 58.347 36.000 27.95 0.98 42.66 1.40
2891 3016 7.765307 AGTCATGACTATGCTTGGTAATTTTG 58.235 34.615 26.87 0.00 40.43 2.44
2895 3020 6.908825 TGACTATGCTTGGTAATTTTGTGTC 58.091 36.000 0.00 0.00 0.00 3.67
2942 3067 5.341617 AGCTCTTATGCGTGTAAAGAGTAC 58.658 41.667 15.22 3.74 45.20 2.73
3014 3139 0.955905 GGAGGGTGCGCTTGTAAAAA 59.044 50.000 9.73 0.00 0.00 1.94
3035 3160 6.783892 AAATGATGAAAACAATTTCGGTGG 57.216 33.333 0.00 0.00 46.47 4.61
3069 3195 3.490249 GCCGGGGCTCAATTGTTTATTAC 60.490 47.826 2.18 0.00 38.26 1.89
3070 3196 3.951680 CCGGGGCTCAATTGTTTATTACT 59.048 43.478 5.13 0.00 0.00 2.24
3071 3197 4.036380 CCGGGGCTCAATTGTTTATTACTC 59.964 45.833 5.13 0.00 0.00 2.59
3072 3198 4.036380 CGGGGCTCAATTGTTTATTACTCC 59.964 45.833 5.13 0.00 0.00 3.85
3073 3199 4.341235 GGGGCTCAATTGTTTATTACTCCC 59.659 45.833 5.13 4.27 0.00 4.30
3074 3200 5.201243 GGGCTCAATTGTTTATTACTCCCT 58.799 41.667 5.13 0.00 30.40 4.20
3075 3201 5.299531 GGGCTCAATTGTTTATTACTCCCTC 59.700 44.000 5.13 0.00 30.40 4.30
3076 3202 6.122964 GGCTCAATTGTTTATTACTCCCTCT 58.877 40.000 5.13 0.00 0.00 3.69
3077 3203 6.038714 GGCTCAATTGTTTATTACTCCCTCTG 59.961 42.308 5.13 0.00 0.00 3.35
3078 3204 6.599638 GCTCAATTGTTTATTACTCCCTCTGT 59.400 38.462 5.13 0.00 0.00 3.41
3079 3205 7.769044 GCTCAATTGTTTATTACTCCCTCTGTA 59.231 37.037 5.13 0.00 0.00 2.74
3080 3206 9.667107 CTCAATTGTTTATTACTCCCTCTGTAA 57.333 33.333 5.13 0.00 34.87 2.41
3083 3209 9.802039 AATTGTTTATTACTCCCTCTGTAAACA 57.198 29.630 0.00 0.00 39.11 2.83
3084 3210 9.802039 ATTGTTTATTACTCCCTCTGTAAACAA 57.198 29.630 17.92 17.92 46.75 2.83
3085 3211 9.629878 TTGTTTATTACTCCCTCTGTAAACAAA 57.370 29.630 14.96 4.00 43.35 2.83
3086 3212 9.802039 TGTTTATTACTCCCTCTGTAAACAAAT 57.198 29.630 6.15 0.00 38.40 2.32
3094 3220 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
3095 3221 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
3096 3222 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
3097 3223 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
3098 3224 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
3099 3225 9.478019 CTCTGTAAACAAATATAAGAGCGTTTG 57.522 33.333 0.00 0.00 37.52 2.93
3100 3226 8.447833 TCTGTAAACAAATATAAGAGCGTTTGG 58.552 33.333 0.00 0.00 36.23 3.28
3101 3227 8.325421 TGTAAACAAATATAAGAGCGTTTGGA 57.675 30.769 0.00 0.00 36.23 3.53
3102 3228 8.952278 TGTAAACAAATATAAGAGCGTTTGGAT 58.048 29.630 0.00 0.00 36.23 3.41
3103 3229 9.434559 GTAAACAAATATAAGAGCGTTTGGATC 57.565 33.333 0.00 0.00 36.23 3.36
3104 3230 7.624360 AACAAATATAAGAGCGTTTGGATCA 57.376 32.000 0.00 0.00 36.23 2.92
3105 3231 7.016361 ACAAATATAAGAGCGTTTGGATCAC 57.984 36.000 0.00 0.00 36.23 3.06
3106 3232 6.823689 ACAAATATAAGAGCGTTTGGATCACT 59.176 34.615 0.00 0.00 36.23 3.41
3107 3233 7.985184 ACAAATATAAGAGCGTTTGGATCACTA 59.015 33.333 0.00 0.00 36.23 2.74
3108 3234 7.948278 AATATAAGAGCGTTTGGATCACTAC 57.052 36.000 0.00 0.00 32.03 2.73
3109 3235 3.963428 AAGAGCGTTTGGATCACTACT 57.037 42.857 0.00 0.00 32.03 2.57
3110 3236 3.963428 AGAGCGTTTGGATCACTACTT 57.037 42.857 0.00 0.00 32.03 2.24
3111 3237 4.273148 AGAGCGTTTGGATCACTACTTT 57.727 40.909 0.00 0.00 32.03 2.66
3112 3238 5.401531 AGAGCGTTTGGATCACTACTTTA 57.598 39.130 0.00 0.00 32.03 1.85
3113 3239 5.411781 AGAGCGTTTGGATCACTACTTTAG 58.588 41.667 0.00 0.00 32.03 1.85
3114 3240 5.047235 AGAGCGTTTGGATCACTACTTTAGT 60.047 40.000 0.00 0.00 40.28 2.24
3115 3241 6.152323 AGAGCGTTTGGATCACTACTTTAGTA 59.848 38.462 0.00 0.00 37.23 1.82
3116 3242 6.694447 AGCGTTTGGATCACTACTTTAGTAA 58.306 36.000 0.00 0.00 37.23 2.24
3117 3243 7.328737 AGCGTTTGGATCACTACTTTAGTAAT 58.671 34.615 0.00 0.00 37.23 1.89
3118 3244 7.491696 AGCGTTTGGATCACTACTTTAGTAATC 59.508 37.037 0.00 0.00 37.23 1.75
3119 3245 7.491696 GCGTTTGGATCACTACTTTAGTAATCT 59.508 37.037 0.00 0.00 37.23 2.40
3125 3251 8.966194 GGATCACTACTTTAGTAATCTAAACGC 58.034 37.037 0.00 0.00 40.05 4.84
3126 3252 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
3127 3253 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
3128 3254 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
3129 3255 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
3143 3269 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3144 3270 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3145 3271 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3146 3272 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3147 3273 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3148 3274 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3149 3275 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3150 3276 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
3151 3277 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
3158 3284 5.205821 TCTTTACGGAGGGAGTATCAATCA 58.794 41.667 0.00 0.00 36.25 2.57
3178 3304 3.253188 TCAAAATTTCAAGGCCTGACTCG 59.747 43.478 5.69 0.00 32.21 4.18
3221 3352 7.631717 TTTTCAAACCCCTTTAAAATGTTGG 57.368 32.000 0.00 0.00 0.00 3.77
3240 3371 7.873719 TGTTGGTTCTTTGTTCTCATTCTTA 57.126 32.000 0.00 0.00 0.00 2.10
3248 3379 7.810658 TCTTTGTTCTCATTCTTAATCTGTGC 58.189 34.615 0.00 0.00 0.00 4.57
3260 3391 1.171308 ATCTGTGCTGTGCATGTTCC 58.829 50.000 0.00 0.00 41.91 3.62
3269 3400 0.098728 GTGCATGTTCCGGCATACAC 59.901 55.000 8.97 8.97 42.75 2.90
3271 3402 0.657840 GCATGTTCCGGCATACACTC 59.342 55.000 0.00 0.00 0.00 3.51
3275 3406 1.090052 GTTCCGGCATACACTCTGGC 61.090 60.000 0.00 0.00 35.94 4.85
3302 3433 5.922053 TGATTCATTGTGATGTAGCTAGCT 58.078 37.500 23.12 23.12 34.77 3.32
3312 3443 0.759436 GTAGCTAGCTACCTGGCCCA 60.759 60.000 35.21 8.70 45.76 5.36
3313 3444 0.191064 TAGCTAGCTACCTGGCCCAT 59.809 55.000 20.67 0.00 45.76 4.00
3362 3493 8.648693 AGAAGTAGTACTATGGTTGAACTTTGT 58.351 33.333 5.75 0.00 0.00 2.83
3446 3577 6.620877 TGGATTCAGCTTCCTCTTAAACTA 57.379 37.500 4.59 0.00 34.17 2.24
3450 3581 8.616942 GGATTCAGCTTCCTCTTAAACTATTTC 58.383 37.037 0.00 0.00 0.00 2.17
3451 3582 9.389755 GATTCAGCTTCCTCTTAAACTATTTCT 57.610 33.333 0.00 0.00 0.00 2.52
3453 3584 8.553459 TCAGCTTCCTCTTAAACTATTTCTTG 57.447 34.615 0.00 0.00 0.00 3.02
3454 3585 7.119846 TCAGCTTCCTCTTAAACTATTTCTTGC 59.880 37.037 0.00 0.00 0.00 4.01
3457 3588 7.965655 GCTTCCTCTTAAACTATTTCTTGCTTC 59.034 37.037 0.00 0.00 0.00 3.86
3458 3589 9.225436 CTTCCTCTTAAACTATTTCTTGCTTCT 57.775 33.333 0.00 0.00 0.00 2.85
3459 3590 8.779354 TCCTCTTAAACTATTTCTTGCTTCTC 57.221 34.615 0.00 0.00 0.00 2.87
3461 3592 7.826744 CCTCTTAAACTATTTCTTGCTTCTCCT 59.173 37.037 0.00 0.00 0.00 3.69
3462 3593 9.225436 CTCTTAAACTATTTCTTGCTTCTCCTT 57.775 33.333 0.00 0.00 0.00 3.36
3466 3597 5.012893 ACTATTTCTTGCTTCTCCTTTGGG 58.987 41.667 0.00 0.00 0.00 4.12
3469 3600 3.312736 TCTTGCTTCTCCTTTGGGTTT 57.687 42.857 0.00 0.00 0.00 3.27
3479 3611 6.945636 TCTCCTTTGGGTTTACTTCTCATA 57.054 37.500 0.00 0.00 0.00 2.15
3492 3624 8.568794 GTTTACTTCTCATAAAAGAACCTGCTT 58.431 33.333 0.00 0.00 32.03 3.91
3493 3625 9.787435 TTTACTTCTCATAAAAGAACCTGCTTA 57.213 29.630 0.00 0.00 32.03 3.09
3508 3640 4.708421 ACCTGCTTATGCTGAATTGTGATT 59.292 37.500 8.78 0.00 40.01 2.57
3530 3662 8.098912 TGATTCTCACATCTCAATTCTGAAGAA 58.901 33.333 0.00 0.00 38.56 2.52
3568 3700 9.868277 TTTATGTTTTACTTTTCATGCCTATGG 57.132 29.630 0.00 0.00 34.97 2.74
3591 3723 1.002430 TGTTGACCATCTCCTGACTGC 59.998 52.381 0.00 0.00 0.00 4.40
3592 3724 0.615331 TTGACCATCTCCTGACTGCC 59.385 55.000 0.00 0.00 0.00 4.85
3593 3725 0.252421 TGACCATCTCCTGACTGCCT 60.252 55.000 0.00 0.00 0.00 4.75
3602 3734 0.322975 CCTGACTGCCTACTGCTTGT 59.677 55.000 0.00 0.00 42.00 3.16
3606 3738 2.831526 TGACTGCCTACTGCTTGTCATA 59.168 45.455 8.60 0.00 43.62 2.15
3627 3759 4.989279 ATCTGACGCCAATTATTGCTTT 57.011 36.364 0.00 0.00 0.00 3.51
3657 3789 1.936547 GTTCTTCCTGATGACATCCGC 59.063 52.381 12.90 0.00 0.00 5.54
3816 3948 4.563184 GCACGAGAGAAGATTTACACGAAT 59.437 41.667 0.00 0.00 0.00 3.34
3879 4011 2.093764 CCTTCAGTCGATCAAGAGGCTT 60.094 50.000 0.00 0.00 0.00 4.35
3958 4090 0.038744 CCTGGCAAATGGGAGTGACT 59.961 55.000 0.00 0.00 0.00 3.41
3972 4104 1.073722 TGACTTGCAGGCCCTTCTG 59.926 57.895 0.00 0.00 37.79 3.02
4046 4178 1.135460 GCCAGCAGCAAAAGAGTGATC 60.135 52.381 0.00 0.00 42.97 2.92
4049 4181 0.179179 GCAGCAAAAGAGTGATCGCC 60.179 55.000 1.76 0.00 0.00 5.54
4080 4215 4.759693 ACAAGCTCGGATCACAAATACAAA 59.240 37.500 0.00 0.00 0.00 2.83
4081 4216 5.106555 ACAAGCTCGGATCACAAATACAAAG 60.107 40.000 0.00 0.00 0.00 2.77
4084 4219 5.473504 AGCTCGGATCACAAATACAAAGTTT 59.526 36.000 0.00 0.00 0.00 2.66
4085 4220 5.569059 GCTCGGATCACAAATACAAAGTTTG 59.431 40.000 14.13 14.13 41.22 2.93
4152 4287 3.907894 TTCCATTTTTGTACTGACGCC 57.092 42.857 0.00 0.00 0.00 5.68
4169 4304 1.201812 CGCCGAACAACAGAAGAATCG 60.202 52.381 0.00 0.00 0.00 3.34
4186 4321 9.268268 AGAAGAATCGTGTATGTTAGTCAAAAA 57.732 29.630 0.00 0.00 0.00 1.94
4251 4386 4.202212 TGTCTGAGGTTTCACGAAATCAGA 60.202 41.667 16.44 16.44 40.90 3.27
4264 4399 9.667989 TTCACGAAATCAGATTATAATTGCATG 57.332 29.630 0.00 0.00 0.00 4.06
4265 4400 7.804600 TCACGAAATCAGATTATAATTGCATGC 59.195 33.333 11.82 11.82 0.00 4.06
4266 4401 7.592164 CACGAAATCAGATTATAATTGCATGCA 59.408 33.333 18.46 18.46 0.00 3.96
4267 4402 8.301720 ACGAAATCAGATTATAATTGCATGCAT 58.698 29.630 23.37 10.46 0.00 3.96
4268 4403 9.777575 CGAAATCAGATTATAATTGCATGCATA 57.222 29.630 23.37 12.62 0.00 3.14
4352 4564 8.138712 GGTTATCTCTAGTTATGTTCTCACAGG 58.861 40.741 0.00 0.00 35.94 4.00
4362 4574 5.804944 ATGTTCTCACAGGATAGATCAGG 57.195 43.478 0.00 0.00 35.94 3.86
4369 4581 1.419012 CAGGATAGATCAGGCTTGGCA 59.581 52.381 0.00 0.00 0.00 4.92
4390 4602 2.583143 ACTTGGGTAACAGAGGCAAAC 58.417 47.619 0.00 0.00 39.74 2.93
4407 4638 2.945008 CAAACCACTCTGCTTCACTTGA 59.055 45.455 0.00 0.00 0.00 3.02
4421 4652 7.147312 TGCTTCACTTGAATGGAAACTAATTG 58.853 34.615 0.00 0.00 33.01 2.32
4428 4659 5.076182 TGAATGGAAACTAATTGTGCTCCA 58.924 37.500 11.24 11.24 42.27 3.86
4552 4786 4.561735 TTTCCAAATCACAGGAACGAAC 57.438 40.909 0.00 0.00 43.23 3.95
4576 4810 5.883673 CCTTTGGATGAAAATGCAAATGGAT 59.116 36.000 5.95 0.00 40.24 3.41
4596 4832 4.511826 GGATACAATGATCGAAAGGTGGTC 59.488 45.833 0.00 0.00 0.00 4.02
4711 4952 4.487714 TCCCTGAGAACATGGTGAATAC 57.512 45.455 0.00 0.00 34.26 1.89
4712 4953 3.118775 TCCCTGAGAACATGGTGAATACG 60.119 47.826 0.00 0.00 34.26 3.06
4713 4954 3.369471 CCCTGAGAACATGGTGAATACGT 60.369 47.826 0.00 0.00 0.00 3.57
4714 4955 4.142026 CCCTGAGAACATGGTGAATACGTA 60.142 45.833 0.00 0.00 0.00 3.57
4730 4971 8.395633 GTGAATACGTATGTTAAAAGCTTCCAT 58.604 33.333 9.24 2.90 0.00 3.41
4733 4974 5.399013 ACGTATGTTAAAAGCTTCCATTGC 58.601 37.500 0.00 0.00 0.00 3.56
4735 4976 5.393027 CGTATGTTAAAAGCTTCCATTGCCT 60.393 40.000 0.00 0.00 0.00 4.75
4736 4977 4.519540 TGTTAAAAGCTTCCATTGCCTC 57.480 40.909 0.00 0.00 0.00 4.70
4737 4978 4.151883 TGTTAAAAGCTTCCATTGCCTCT 58.848 39.130 0.00 0.00 0.00 3.69
4738 4979 4.218417 TGTTAAAAGCTTCCATTGCCTCTC 59.782 41.667 0.00 0.00 0.00 3.20
4739 4980 2.592102 AAAGCTTCCATTGCCTCTCA 57.408 45.000 0.00 0.00 0.00 3.27
4740 4981 1.831580 AAGCTTCCATTGCCTCTCAC 58.168 50.000 0.00 0.00 0.00 3.51
4742 4983 1.093159 GCTTCCATTGCCTCTCACAG 58.907 55.000 0.00 0.00 0.00 3.66
4750 4991 3.508793 CATTGCCTCTCACAGGAAAATGT 59.491 43.478 0.00 0.00 44.01 2.71
4761 5002 4.023878 CACAGGAAAATGTTTGGCAAATGG 60.024 41.667 16.74 1.41 0.00 3.16
4909 5150 4.275196 AGAAGAAAAGACGGGTAAGTTTGC 59.725 41.667 0.00 0.00 0.00 3.68
4943 5184 1.739562 GCAGTGGCACTCTTCTCCG 60.740 63.158 19.13 5.81 40.72 4.63
4970 5211 3.461773 CCTCCCAGTCGCCGTCAT 61.462 66.667 0.00 0.00 0.00 3.06
4971 5212 2.105128 CTCCCAGTCGCCGTCATC 59.895 66.667 0.00 0.00 0.00 2.92
4972 5213 2.362503 TCCCAGTCGCCGTCATCT 60.363 61.111 0.00 0.00 0.00 2.90
5051 5292 2.034687 CCTGTTCCACCAGGCAGG 59.965 66.667 0.00 0.00 45.19 4.85
5052 5293 2.674380 CTGTTCCACCAGGCAGGC 60.674 66.667 0.00 0.00 43.14 4.85
5083 5331 7.041372 TGGTATACAGTTGAAGCTGAAAAGAAC 60.041 37.037 5.01 0.00 39.62 3.01
5087 5335 5.218139 CAGTTGAAGCTGAAAAGAACCATC 58.782 41.667 0.00 0.00 38.70 3.51
5088 5336 4.023707 AGTTGAAGCTGAAAAGAACCATCG 60.024 41.667 0.00 0.00 0.00 3.84
5089 5337 2.226437 TGAAGCTGAAAAGAACCATCGC 59.774 45.455 0.00 0.00 0.00 4.58
5090 5338 0.798776 AGCTGAAAAGAACCATCGCG 59.201 50.000 0.00 0.00 0.00 5.87
5091 5339 0.517316 GCTGAAAAGAACCATCGCGT 59.483 50.000 5.77 0.00 0.00 6.01
5092 5340 1.730064 GCTGAAAAGAACCATCGCGTA 59.270 47.619 5.77 0.00 0.00 4.42
5109 5357 1.066605 CGTAGCGTACAATGCCCTACT 59.933 52.381 0.00 0.00 0.00 2.57
5116 5367 4.617762 GCGTACAATGCCCTACTCCTATAC 60.618 50.000 0.00 0.00 0.00 1.47
5146 5397 2.167281 TGCAAAGCAACTTGGTAAGCAA 59.833 40.909 14.38 0.00 35.75 3.91
5147 5398 3.194062 GCAAAGCAACTTGGTAAGCAAA 58.806 40.909 10.86 0.00 31.16 3.68
5148 5399 3.620821 GCAAAGCAACTTGGTAAGCAAAA 59.379 39.130 10.86 0.00 31.16 2.44
5213 5470 2.610859 GGAGGGGGAGAAGCCACA 60.611 66.667 0.00 0.00 44.24 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.386237 GTGCTCCACTCGCCCTCT 61.386 66.667 0.00 0.00 0.00 3.69
37 38 2.047274 CTCACCGCGTCCAATGGT 60.047 61.111 4.92 0.00 36.10 3.55
89 90 1.938657 CTCTGAGAAGGCTTCCGCGA 61.939 60.000 23.09 14.92 36.88 5.87
105 106 0.972883 GCGGGATATCCTCTTGCTCT 59.027 55.000 21.18 0.00 35.95 4.09
118 119 2.586792 GTCTTGGAGCTGCGGGAT 59.413 61.111 0.00 0.00 0.00 3.85
123 124 3.482783 GCGACGTCTTGGAGCTGC 61.483 66.667 14.70 0.00 0.00 5.25
303 304 5.237561 GGAGAACAGAAGGAAGTGAAAGTTC 59.762 44.000 0.00 0.00 45.55 3.01
548 581 5.705609 ACAACCCAATCACAAACAGATAC 57.294 39.130 0.00 0.00 0.00 2.24
549 582 8.415950 AAATACAACCCAATCACAAACAGATA 57.584 30.769 0.00 0.00 0.00 1.98
550 583 6.916360 AATACAACCCAATCACAAACAGAT 57.084 33.333 0.00 0.00 0.00 2.90
559 592 3.841255 GGGGGAAAAATACAACCCAATCA 59.159 43.478 0.00 0.00 43.30 2.57
724 768 2.996249 AATGACAGCCTCACGATCAT 57.004 45.000 0.00 0.00 31.34 2.45
740 784 8.440059 ACGTACACATAACAACACAGATTAATG 58.560 33.333 0.00 0.00 0.00 1.90
775 819 7.442364 AGCAAACATATTCATCGCTAAGTACAT 59.558 33.333 0.00 0.00 0.00 2.29
814 858 4.164413 GGGAGAAGCCAGGTTTTCTATACT 59.836 45.833 7.99 0.00 38.95 2.12
826 870 4.468829 TCTCAGGGGAGAAGCCAG 57.531 61.111 0.00 0.00 46.94 4.85
833 877 5.819901 GTGAGATTATGTTTTCTCAGGGGAG 59.180 44.000 3.02 0.00 46.63 4.30
835 879 4.884164 GGTGAGATTATGTTTTCTCAGGGG 59.116 45.833 3.02 0.00 46.63 4.79
875 919 1.880340 CGCACCGGAGAGATTCTGC 60.880 63.158 9.46 3.39 0.00 4.26
930 976 2.754946 TTGTGACACGGGAATACTCC 57.245 50.000 0.00 0.00 41.59 3.85
947 993 4.114997 GGCGCCGGTGTGGATTTG 62.115 66.667 12.58 0.00 42.00 2.32
1169 1216 2.352805 GGGTGGGCACAGAAGGAG 59.647 66.667 0.00 0.00 0.00 3.69
1198 1245 4.828296 GGTAGGGTCGGAGGCGGA 62.828 72.222 0.00 0.00 0.00 5.54
1326 1373 1.280142 CTCGGAGTGGAGCGTATCG 59.720 63.158 0.00 0.00 0.00 2.92
1482 1529 1.798368 CGTCAATGTCGTCGATCGCC 61.798 60.000 11.09 0.00 39.67 5.54
2025 2072 2.162681 GCAAGCATCACTGTAAACCCT 58.837 47.619 0.00 0.00 0.00 4.34
2028 2075 3.125146 TCATCGCAAGCATCACTGTAAAC 59.875 43.478 0.00 0.00 37.18 2.01
2032 2079 1.081892 GTCATCGCAAGCATCACTGT 58.918 50.000 0.00 0.00 37.18 3.55
2033 2080 0.025898 CGTCATCGCAAGCATCACTG 59.974 55.000 0.00 0.00 37.18 3.66
2035 2082 0.247419 CACGTCATCGCAAGCATCAC 60.247 55.000 0.00 0.00 41.18 3.06
2052 2099 6.012658 TCTGAATTTTGCAGGTAACATCAC 57.987 37.500 0.00 0.00 41.41 3.06
2059 2106 5.127519 CCCATGATTCTGAATTTTGCAGGTA 59.872 40.000 4.11 0.00 34.20 3.08
2152 2202 7.712264 TTGAGCAAAAGGTTGAAATGTATTG 57.288 32.000 0.00 0.00 36.83 1.90
2169 2220 4.985538 AGAACCAAGTAGGATTTGAGCAA 58.014 39.130 0.00 0.00 41.22 3.91
2182 2233 1.269936 GCTGCAATGCAAGAACCAAGT 60.270 47.619 9.92 0.00 38.41 3.16
2227 2278 8.924511 ACATCTCTTTGATCAGTTTTCCTTTA 57.075 30.769 0.00 0.00 32.05 1.85
2230 2281 7.000472 TGAACATCTCTTTGATCAGTTTTCCT 59.000 34.615 0.00 0.00 32.05 3.36
2296 2347 5.018539 TCCGGTCACCATTATTTAGTCTG 57.981 43.478 0.00 0.00 0.00 3.51
2307 2359 0.908910 TATGTTGCTCCGGTCACCAT 59.091 50.000 0.00 7.96 0.00 3.55
2312 2364 9.744468 AATAAATTTATTTATGTTGCTCCGGTC 57.256 29.630 16.15 0.00 40.90 4.79
2358 2418 9.281371 CTATCATTACATTCAACAGATGACCAT 57.719 33.333 0.00 0.00 37.92 3.55
2367 2427 7.441836 ACTATCGGCTATCATTACATTCAACA 58.558 34.615 0.00 0.00 0.00 3.33
2400 2460 4.074259 TGCAGCACAAACATTAGATGACT 58.926 39.130 0.00 0.00 0.00 3.41
2415 2475 0.962356 ATACAGCCAGGTTGCAGCAC 60.962 55.000 2.54 0.00 0.00 4.40
2417 2477 0.890683 AAATACAGCCAGGTTGCAGC 59.109 50.000 2.54 0.00 0.00 5.25
2418 2478 3.081061 TGTAAATACAGCCAGGTTGCAG 58.919 45.455 2.54 0.00 0.00 4.41
2421 2481 7.336931 AGAAACTATGTAAATACAGCCAGGTTG 59.663 37.037 0.79 0.79 39.92 3.77
2449 2516 3.577848 AGCAAATGCCTTTACATGGTCAA 59.422 39.130 0.94 0.00 43.38 3.18
2457 2524 4.094887 TGAATCTCGAGCAAATGCCTTTAC 59.905 41.667 7.81 0.00 43.38 2.01
2459 2526 3.084039 TGAATCTCGAGCAAATGCCTTT 58.916 40.909 7.81 0.00 43.38 3.11
2461 2528 2.408271 TGAATCTCGAGCAAATGCCT 57.592 45.000 7.81 0.00 43.38 4.75
2462 2529 2.789092 CGTTGAATCTCGAGCAAATGCC 60.789 50.000 7.81 0.00 43.38 4.40
2463 2530 2.094258 TCGTTGAATCTCGAGCAAATGC 59.906 45.455 7.81 0.00 42.49 3.56
2472 2577 5.289675 AGTTCATAAGCTTCGTTGAATCTCG 59.710 40.000 17.35 0.00 31.39 4.04
2500 2605 5.221342 GCACTACCAGCACTGACTCTATAAT 60.221 44.000 0.00 0.00 0.00 1.28
2501 2606 4.098044 GCACTACCAGCACTGACTCTATAA 59.902 45.833 0.00 0.00 0.00 0.98
2502 2607 3.632604 GCACTACCAGCACTGACTCTATA 59.367 47.826 0.00 0.00 0.00 1.31
2503 2608 2.428890 GCACTACCAGCACTGACTCTAT 59.571 50.000 0.00 0.00 0.00 1.98
2504 2609 1.819288 GCACTACCAGCACTGACTCTA 59.181 52.381 0.00 0.00 0.00 2.43
2505 2610 0.605589 GCACTACCAGCACTGACTCT 59.394 55.000 0.00 0.00 0.00 3.24
2506 2611 0.390472 GGCACTACCAGCACTGACTC 60.390 60.000 0.00 0.00 38.86 3.36
2507 2612 1.121407 TGGCACTACCAGCACTGACT 61.121 55.000 0.00 0.00 46.36 3.41
2508 2613 1.371183 TGGCACTACCAGCACTGAC 59.629 57.895 0.00 0.00 46.36 3.51
2509 2614 3.884318 TGGCACTACCAGCACTGA 58.116 55.556 0.00 0.00 46.36 3.41
2544 2650 2.622064 ATAAGCTGGCCTAAGGAACG 57.378 50.000 3.32 0.00 0.00 3.95
2630 2736 6.360370 AGAATCACACTAACTAGGAAGCAA 57.640 37.500 0.00 0.00 0.00 3.91
2632 2738 8.035984 AGTTTAGAATCACACTAACTAGGAAGC 58.964 37.037 0.00 0.00 30.95 3.86
2651 2757 7.763528 ACAATGTTGTGCAAAATCAAGTTTAGA 59.236 29.630 0.00 0.00 40.49 2.10
2661 2767 4.817464 AGATGCAACAATGTTGTGCAAAAT 59.183 33.333 24.71 6.21 43.18 1.82
2676 2795 7.678947 ACATATATAAAGGAGCAGATGCAAC 57.321 36.000 7.68 0.00 45.16 4.17
2697 2816 2.957402 TCCTTGGCAGACTGAAACAT 57.043 45.000 6.65 0.00 0.00 2.71
2705 2824 1.271054 ACAGTGTGATCCTTGGCAGAC 60.271 52.381 0.00 0.00 0.00 3.51
2807 2929 7.670979 TGCCTATCCAGCATACAATGAATAAAT 59.329 33.333 0.00 0.00 34.69 1.40
2810 2932 6.125589 TGCCTATCCAGCATACAATGAATA 57.874 37.500 0.00 0.00 34.69 1.75
2843 2965 9.803315 GACTCATTACACTACTCAAATACATGA 57.197 33.333 0.00 0.00 0.00 3.07
2850 2972 7.896811 AGTCATGACTCATTACACTACTCAAA 58.103 34.615 22.89 0.00 36.92 2.69
2864 2987 5.675684 TTACCAAGCATAGTCATGACTCA 57.324 39.130 31.09 17.58 42.54 3.41
2886 3011 5.821516 TGAAACTAACACCGACACAAAAT 57.178 34.783 0.00 0.00 0.00 1.82
2888 3013 4.696402 ACTTGAAACTAACACCGACACAAA 59.304 37.500 0.00 0.00 0.00 2.83
2891 3016 4.870221 AACTTGAAACTAACACCGACAC 57.130 40.909 0.00 0.00 0.00 3.67
2895 3020 9.698617 GCTATATTAAACTTGAAACTAACACCG 57.301 33.333 0.00 0.00 0.00 4.94
2956 3081 5.703978 TTGATTATGTGTGTGTTTCCTGG 57.296 39.130 0.00 0.00 0.00 4.45
3014 3139 5.720371 TCCACCGAAATTGTTTTCATCAT 57.280 34.783 0.00 0.00 41.12 2.45
3030 3155 1.439679 GGCTACAAGAGTTTCCACCG 58.560 55.000 0.00 0.00 0.00 4.94
3035 3160 1.025113 GCCCCGGCTACAAGAGTTTC 61.025 60.000 0.00 0.00 38.26 2.78
3069 3195 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
3070 3196 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
3071 3197 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
3072 3198 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
3073 3199 9.478019 CAAACGCTCTTATATTTGTTTACAGAG 57.522 33.333 0.00 0.00 0.00 3.35
3074 3200 8.447833 CCAAACGCTCTTATATTTGTTTACAGA 58.552 33.333 0.00 0.00 31.48 3.41
3075 3201 8.447833 TCCAAACGCTCTTATATTTGTTTACAG 58.552 33.333 0.00 0.00 31.48 2.74
3076 3202 8.325421 TCCAAACGCTCTTATATTTGTTTACA 57.675 30.769 0.00 0.00 31.48 2.41
3077 3203 9.434559 GATCCAAACGCTCTTATATTTGTTTAC 57.565 33.333 0.00 0.00 31.48 2.01
3078 3204 9.168451 TGATCCAAACGCTCTTATATTTGTTTA 57.832 29.630 0.00 0.00 31.48 2.01
3079 3205 7.968405 GTGATCCAAACGCTCTTATATTTGTTT 59.032 33.333 0.00 0.00 31.48 2.83
3080 3206 7.336931 AGTGATCCAAACGCTCTTATATTTGTT 59.663 33.333 0.00 0.00 31.48 2.83
3081 3207 6.823689 AGTGATCCAAACGCTCTTATATTTGT 59.176 34.615 0.00 0.00 31.48 2.83
3082 3208 7.251704 AGTGATCCAAACGCTCTTATATTTG 57.748 36.000 0.00 0.00 32.89 2.32
3083 3209 8.204836 AGTAGTGATCCAAACGCTCTTATATTT 58.795 33.333 0.00 0.00 0.00 1.40
3084 3210 7.727181 AGTAGTGATCCAAACGCTCTTATATT 58.273 34.615 0.00 0.00 0.00 1.28
3085 3211 7.291411 AGTAGTGATCCAAACGCTCTTATAT 57.709 36.000 0.00 0.00 0.00 0.86
3086 3212 6.710597 AGTAGTGATCCAAACGCTCTTATA 57.289 37.500 0.00 0.00 0.00 0.98
3087 3213 5.599999 AGTAGTGATCCAAACGCTCTTAT 57.400 39.130 0.00 0.00 0.00 1.73
3088 3214 5.401531 AAGTAGTGATCCAAACGCTCTTA 57.598 39.130 0.00 0.00 0.00 2.10
3089 3215 3.963428 AGTAGTGATCCAAACGCTCTT 57.037 42.857 0.00 0.00 0.00 2.85
3090 3216 3.963428 AAGTAGTGATCCAAACGCTCT 57.037 42.857 0.00 0.00 0.00 4.09
3091 3217 5.169295 ACTAAAGTAGTGATCCAAACGCTC 58.831 41.667 0.00 0.00 37.69 5.03
3092 3218 5.148651 ACTAAAGTAGTGATCCAAACGCT 57.851 39.130 0.00 0.00 37.69 5.07
3093 3219 6.956299 TTACTAAAGTAGTGATCCAAACGC 57.044 37.500 0.00 0.00 39.81 4.84
3094 3220 8.928270 AGATTACTAAAGTAGTGATCCAAACG 57.072 34.615 13.59 0.00 46.90 3.60
3099 3225 8.966194 GCGTTTAGATTACTAAAGTAGTGATCC 58.034 37.037 13.59 2.28 46.90 3.36
3100 3226 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
3101 3227 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
3102 3228 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
3103 3229 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
3117 3243 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
3118 3244 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
3119 3245 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3120 3246 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3121 3247 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3122 3248 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3123 3249 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3124 3250 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3125 3251 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3126 3252 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3127 3253 9.857957 GATACTCCCTCCGTAAAGAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
3128 3254 9.370930 TGATACTCCCTCCGTAAAGAAATATAA 57.629 33.333 0.00 0.00 0.00 0.98
3129 3255 8.945195 TGATACTCCCTCCGTAAAGAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
3130 3256 7.850935 TGATACTCCCTCCGTAAAGAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
3131 3257 7.664552 TTGATACTCCCTCCGTAAAGAAATA 57.335 36.000 0.00 0.00 0.00 1.40
3132 3258 6.555463 TTGATACTCCCTCCGTAAAGAAAT 57.445 37.500 0.00 0.00 0.00 2.17
3133 3259 6.155565 TGATTGATACTCCCTCCGTAAAGAAA 59.844 38.462 0.00 0.00 0.00 2.52
3134 3260 5.659525 TGATTGATACTCCCTCCGTAAAGAA 59.340 40.000 0.00 0.00 0.00 2.52
3135 3261 5.205821 TGATTGATACTCCCTCCGTAAAGA 58.794 41.667 0.00 0.00 0.00 2.52
3136 3262 5.531122 TGATTGATACTCCCTCCGTAAAG 57.469 43.478 0.00 0.00 0.00 1.85
3137 3263 5.943349 TTGATTGATACTCCCTCCGTAAA 57.057 39.130 0.00 0.00 0.00 2.01
3138 3264 5.943349 TTTGATTGATACTCCCTCCGTAA 57.057 39.130 0.00 0.00 0.00 3.18
3139 3265 5.943349 TTTTGATTGATACTCCCTCCGTA 57.057 39.130 0.00 0.00 0.00 4.02
3140 3266 4.837093 TTTTGATTGATACTCCCTCCGT 57.163 40.909 0.00 0.00 0.00 4.69
3141 3267 6.318648 TGAAATTTTGATTGATACTCCCTCCG 59.681 38.462 0.00 0.00 0.00 4.63
3142 3268 7.645058 TGAAATTTTGATTGATACTCCCTCC 57.355 36.000 0.00 0.00 0.00 4.30
3143 3269 8.193438 CCTTGAAATTTTGATTGATACTCCCTC 58.807 37.037 0.00 0.00 0.00 4.30
3144 3270 7.364144 GCCTTGAAATTTTGATTGATACTCCCT 60.364 37.037 0.00 0.00 0.00 4.20
3145 3271 6.758416 GCCTTGAAATTTTGATTGATACTCCC 59.242 38.462 0.00 0.00 0.00 4.30
3146 3272 6.758416 GGCCTTGAAATTTTGATTGATACTCC 59.242 38.462 0.00 0.00 0.00 3.85
3147 3273 7.490402 CAGGCCTTGAAATTTTGATTGATACTC 59.510 37.037 0.00 0.00 0.00 2.59
3148 3274 7.178983 TCAGGCCTTGAAATTTTGATTGATACT 59.821 33.333 0.00 0.00 31.34 2.12
3149 3275 7.276438 GTCAGGCCTTGAAATTTTGATTGATAC 59.724 37.037 0.00 0.00 37.61 2.24
3150 3276 7.178983 AGTCAGGCCTTGAAATTTTGATTGATA 59.821 33.333 0.00 0.00 37.61 2.15
3151 3277 6.013984 AGTCAGGCCTTGAAATTTTGATTGAT 60.014 34.615 0.00 0.00 37.61 2.57
3158 3284 3.486383 TCGAGTCAGGCCTTGAAATTTT 58.514 40.909 0.00 0.00 37.61 1.82
3215 3346 6.966534 AGAATGAGAACAAAGAACCAACAT 57.033 33.333 0.00 0.00 0.00 2.71
3217 3348 9.399403 GATTAAGAATGAGAACAAAGAACCAAC 57.601 33.333 0.00 0.00 0.00 3.77
3221 3352 9.604626 CACAGATTAAGAATGAGAACAAAGAAC 57.395 33.333 0.00 0.00 0.00 3.01
3240 3371 1.542915 GGAACATGCACAGCACAGATT 59.457 47.619 0.00 0.00 43.04 2.40
3248 3379 0.378257 GTATGCCGGAACATGCACAG 59.622 55.000 5.05 0.00 38.54 3.66
3260 3391 0.176680 AGAAGCCAGAGTGTATGCCG 59.823 55.000 0.00 0.00 0.00 5.69
3269 3400 4.259356 TCACAATGAATCAGAAGCCAGAG 58.741 43.478 0.00 0.00 0.00 3.35
3271 3402 4.398358 ACATCACAATGAATCAGAAGCCAG 59.602 41.667 0.00 0.00 36.67 4.85
3275 3406 6.922247 AGCTACATCACAATGAATCAGAAG 57.078 37.500 0.00 0.00 36.67 2.85
3302 3433 5.910931 TCAGAACTATATATGGGCCAGGTA 58.089 41.667 13.78 7.80 0.00 3.08
3335 3466 8.926710 CAAAGTTCAACCATAGTACTACTTCTG 58.073 37.037 4.31 0.00 0.00 3.02
3341 3472 6.526526 TGCACAAAGTTCAACCATAGTACTA 58.473 36.000 4.77 4.77 0.00 1.82
3342 3473 5.373222 TGCACAAAGTTCAACCATAGTACT 58.627 37.500 0.00 0.00 0.00 2.73
3343 3474 5.682943 TGCACAAAGTTCAACCATAGTAC 57.317 39.130 0.00 0.00 0.00 2.73
3345 3476 7.394359 AGAATATGCACAAAGTTCAACCATAGT 59.606 33.333 0.00 0.00 0.00 2.12
3346 3477 7.699391 CAGAATATGCACAAAGTTCAACCATAG 59.301 37.037 0.00 0.00 0.00 2.23
3347 3478 7.537715 CAGAATATGCACAAAGTTCAACCATA 58.462 34.615 0.00 0.00 0.00 2.74
3348 3479 6.392354 CAGAATATGCACAAAGTTCAACCAT 58.608 36.000 0.00 0.00 0.00 3.55
3349 3480 5.771469 CAGAATATGCACAAAGTTCAACCA 58.229 37.500 0.00 0.00 0.00 3.67
3401 3532 7.010160 TCCATAAAAAGGACCATCAAAAGTCT 58.990 34.615 0.00 0.00 33.39 3.24
3446 3577 3.849527 ACCCAAAGGAGAAGCAAGAAAT 58.150 40.909 0.00 0.00 36.73 2.17
3450 3581 4.145052 AGTAAACCCAAAGGAGAAGCAAG 58.855 43.478 0.00 0.00 36.73 4.01
3451 3582 4.178956 AGTAAACCCAAAGGAGAAGCAA 57.821 40.909 0.00 0.00 36.73 3.91
3453 3584 4.399219 AGAAGTAAACCCAAAGGAGAAGC 58.601 43.478 0.00 0.00 36.73 3.86
3454 3585 5.621193 TGAGAAGTAAACCCAAAGGAGAAG 58.379 41.667 0.00 0.00 36.73 2.85
3457 3588 7.996098 TTTATGAGAAGTAAACCCAAAGGAG 57.004 36.000 0.00 0.00 36.73 3.69
3458 3589 8.221944 TCTTTTATGAGAAGTAAACCCAAAGGA 58.778 33.333 0.00 0.00 36.73 3.36
3459 3590 8.404107 TCTTTTATGAGAAGTAAACCCAAAGG 57.596 34.615 0.00 0.00 40.04 3.11
3461 3592 8.635328 GGTTCTTTTATGAGAAGTAAACCCAAA 58.365 33.333 0.00 0.00 36.39 3.28
3462 3593 8.002459 AGGTTCTTTTATGAGAAGTAAACCCAA 58.998 33.333 0.00 0.00 36.39 4.12
3466 3597 8.100508 AGCAGGTTCTTTTATGAGAAGTAAAC 57.899 34.615 0.00 0.00 36.39 2.01
3469 3600 9.383519 CATAAGCAGGTTCTTTTATGAGAAGTA 57.616 33.333 0.00 0.00 36.39 2.24
3479 3611 5.990120 ATTCAGCATAAGCAGGTTCTTTT 57.010 34.783 0.00 0.00 45.49 2.27
3508 3640 7.392418 ACATTCTTCAGAATTGAGATGTGAGA 58.608 34.615 0.00 0.00 42.41 3.27
3550 3682 7.831690 TCAACATACCATAGGCATGAAAAGTAA 59.168 33.333 0.00 0.00 33.67 2.24
3554 3686 5.359576 GGTCAACATACCATAGGCATGAAAA 59.640 40.000 0.00 0.00 39.50 2.29
3557 3689 3.457749 TGGTCAACATACCATAGGCATGA 59.542 43.478 0.00 0.00 44.68 3.07
3568 3700 4.437239 CAGTCAGGAGATGGTCAACATAC 58.563 47.826 0.00 0.00 40.72 2.39
3579 3711 1.118838 GCAGTAGGCAGTCAGGAGAT 58.881 55.000 0.00 0.00 43.97 2.75
3591 3723 4.294232 CGTCAGATATGACAAGCAGTAGG 58.706 47.826 19.79 0.00 38.65 3.18
3592 3724 3.733224 GCGTCAGATATGACAAGCAGTAG 59.267 47.826 19.79 2.75 38.65 2.57
3593 3725 3.490933 GGCGTCAGATATGACAAGCAGTA 60.491 47.826 19.79 0.00 38.65 2.74
3602 3734 5.308014 AGCAATAATTGGCGTCAGATATGA 58.692 37.500 0.00 0.00 34.54 2.15
3606 3738 4.989279 AAAGCAATAATTGGCGTCAGAT 57.011 36.364 0.00 0.00 34.54 2.90
3645 3777 1.753930 ATGCTTTGCGGATGTCATCA 58.246 45.000 14.72 0.00 0.00 3.07
3657 3789 5.346822 GTCCACAATAAAGAGCAATGCTTTG 59.653 40.000 9.91 11.97 39.88 2.77
3795 3927 6.967767 CACTATTCGTGTAAATCTTCTCTCGT 59.032 38.462 0.00 0.00 38.84 4.18
3816 3948 4.340950 TCGTTCATGATATGAGCCACACTA 59.659 41.667 0.00 0.00 40.94 2.74
3879 4011 1.077787 CCGCTGGCAAAGGGTCATA 60.078 57.895 0.32 0.00 37.13 2.15
3909 4041 0.682209 CCACTGATTTGGAGGGCAGG 60.682 60.000 0.00 0.00 39.24 4.85
3958 4090 2.032528 CGACAGAAGGGCCTGCAA 59.967 61.111 15.67 0.00 37.68 4.08
3985 4117 1.477295 AGAAGGACCTTTCGTCGGATC 59.523 52.381 8.49 0.00 42.99 3.36
4033 4165 1.442769 TGAGGCGATCACTCTTTTGC 58.557 50.000 13.65 0.00 35.98 3.68
4046 4178 2.281761 AGCTTGTGGGTTGAGGCG 60.282 61.111 0.00 0.00 0.00 5.52
4049 4181 0.036010 ATCCGAGCTTGTGGGTTGAG 60.036 55.000 0.00 0.00 0.00 3.02
4080 4215 3.673543 TTACACAAAGACCCCCAAACT 57.326 42.857 0.00 0.00 0.00 2.66
4081 4216 4.149598 AGATTACACAAAGACCCCCAAAC 58.850 43.478 0.00 0.00 0.00 2.93
4084 4219 5.073965 AGTTTAGATTACACAAAGACCCCCA 59.926 40.000 0.00 0.00 0.00 4.96
4085 4220 5.567430 AGTTTAGATTACACAAAGACCCCC 58.433 41.667 0.00 0.00 0.00 5.40
4152 4287 5.118664 ACATACACGATTCTTCTGTTGTTCG 59.881 40.000 0.00 0.00 0.00 3.95
4220 4355 4.988540 CGTGAAACCTCAGACAGTGAATTA 59.011 41.667 0.00 0.00 33.60 1.40
4264 4399 2.494059 ACGGTGCAGGATGTTATATGC 58.506 47.619 0.00 0.00 39.31 3.14
4265 4400 4.126437 TGAACGGTGCAGGATGTTATATG 58.874 43.478 0.00 0.00 39.31 1.78
4266 4401 4.415881 TGAACGGTGCAGGATGTTATAT 57.584 40.909 0.00 0.00 39.31 0.86
4267 4402 3.897141 TGAACGGTGCAGGATGTTATA 57.103 42.857 0.00 0.00 39.31 0.98
4268 4403 2.747446 GTTGAACGGTGCAGGATGTTAT 59.253 45.455 0.00 0.00 39.31 1.89
4269 4404 2.147958 GTTGAACGGTGCAGGATGTTA 58.852 47.619 0.00 0.00 39.31 2.41
4316 4451 5.878406 ACTAGAGATAACCCACCTGATTG 57.122 43.478 0.00 0.00 0.00 2.67
4352 4564 3.205784 AGTTGCCAAGCCTGATCTATC 57.794 47.619 0.00 0.00 0.00 2.08
4362 4574 1.000274 CTGTTACCCAAGTTGCCAAGC 60.000 52.381 0.00 0.00 0.00 4.01
4369 4581 2.956333 GTTTGCCTCTGTTACCCAAGTT 59.044 45.455 0.00 0.00 0.00 2.66
4390 4602 2.486982 CCATTCAAGTGAAGCAGAGTGG 59.513 50.000 0.00 0.00 37.48 4.00
4407 4638 4.220602 GGTGGAGCACAATTAGTTTCCATT 59.779 41.667 11.04 0.00 41.14 3.16
4421 4652 3.618780 CTGCAGGAGGGTGGAGCAC 62.619 68.421 5.57 0.00 0.00 4.40
4461 4695 3.743521 CACAAGGGAGACTGATGAAACA 58.256 45.455 0.00 0.00 0.00 2.83
4544 4778 4.577834 TTTTCATCCAAAGGTTCGTTCC 57.422 40.909 0.00 0.00 0.00 3.62
4552 4786 5.247084 TCCATTTGCATTTTCATCCAAAGG 58.753 37.500 0.00 0.00 31.57 3.11
4576 4810 4.819105 AGACCACCTTTCGATCATTGTA 57.181 40.909 0.00 0.00 0.00 2.41
4594 4830 5.581085 ACGTAGGCATTCATGTCTAAAAGAC 59.419 40.000 2.64 0.01 45.53 3.01
4596 4832 6.422776 AACGTAGGCATTCATGTCTAAAAG 57.577 37.500 2.64 1.56 45.53 2.27
4711 4952 4.798387 GGCAATGGAAGCTTTTAACATACG 59.202 41.667 0.00 0.92 0.00 3.06
4712 4953 5.965922 AGGCAATGGAAGCTTTTAACATAC 58.034 37.500 0.00 0.64 0.00 2.39
4713 4954 5.951747 AGAGGCAATGGAAGCTTTTAACATA 59.048 36.000 0.00 0.00 0.00 2.29
4714 4955 4.774200 AGAGGCAATGGAAGCTTTTAACAT 59.226 37.500 0.00 0.69 0.00 2.71
4730 4971 3.228188 ACATTTTCCTGTGAGAGGCAA 57.772 42.857 0.00 0.00 42.47 4.52
4733 4974 3.305608 GCCAAACATTTTCCTGTGAGAGG 60.306 47.826 0.00 0.00 44.45 3.69
4735 4976 3.295093 TGCCAAACATTTTCCTGTGAGA 58.705 40.909 0.00 0.00 0.00 3.27
4736 4977 3.731652 TGCCAAACATTTTCCTGTGAG 57.268 42.857 0.00 0.00 0.00 3.51
4737 4978 4.478206 TTTGCCAAACATTTTCCTGTGA 57.522 36.364 0.00 0.00 0.00 3.58
4738 4979 4.023878 CCATTTGCCAAACATTTTCCTGTG 60.024 41.667 0.00 0.00 0.00 3.66
4739 4980 4.136051 CCATTTGCCAAACATTTTCCTGT 58.864 39.130 0.00 0.00 0.00 4.00
4740 4981 4.136051 ACCATTTGCCAAACATTTTCCTG 58.864 39.130 0.00 0.00 0.00 3.86
4742 4983 5.123661 CCATACCATTTGCCAAACATTTTCC 59.876 40.000 0.00 0.00 0.00 3.13
4744 4985 4.458642 GCCATACCATTTGCCAAACATTTT 59.541 37.500 0.00 0.00 0.00 1.82
4750 4991 1.066286 GCAGCCATACCATTTGCCAAA 60.066 47.619 0.00 0.00 0.00 3.28
4775 5016 8.971321 CAACTGTTTCATCAAGTAAGAAAATGG 58.029 33.333 0.00 0.00 33.54 3.16
4776 5017 9.520204 ACAACTGTTTCATCAAGTAAGAAAATG 57.480 29.630 0.00 0.00 33.54 2.32
4845 5086 8.319143 TCATGATGATCTATGTTAAGCATGTG 57.681 34.615 0.00 0.00 38.47 3.21
4861 5102 2.289506 CCGGCAGACAGATCATGATGAT 60.290 50.000 14.30 7.81 40.34 2.45
4862 5103 1.069668 CCGGCAGACAGATCATGATGA 59.930 52.381 14.30 0.00 0.00 2.92
4887 5128 4.534168 GCAAACTTACCCGTCTTTTCTTC 58.466 43.478 0.00 0.00 0.00 2.87
4909 5150 0.511221 CTGCCGTCAACAAACGTAGG 59.489 55.000 0.00 0.00 41.01 3.18
4943 5184 3.151022 CTGGGAGGGAGAGGTCGC 61.151 72.222 0.00 0.00 35.85 5.19
5049 5290 4.634012 TCAACTGTATACCAAACTGCCT 57.366 40.909 0.00 0.00 0.00 4.75
5050 5291 4.379499 GCTTCAACTGTATACCAAACTGCC 60.379 45.833 0.00 0.00 0.00 4.85
5051 5292 4.455877 AGCTTCAACTGTATACCAAACTGC 59.544 41.667 0.00 0.00 0.00 4.40
5052 5293 5.700832 TCAGCTTCAACTGTATACCAAACTG 59.299 40.000 0.00 0.00 38.84 3.16
5088 5336 0.249155 TAGGGCATTGTACGCTACGC 60.249 55.000 0.00 0.00 0.00 4.42
5089 5337 1.484356 GTAGGGCATTGTACGCTACG 58.516 55.000 2.80 0.00 41.70 3.51
5091 5339 1.684983 GGAGTAGGGCATTGTACGCTA 59.315 52.381 0.00 0.00 0.00 4.26
5092 5340 0.464452 GGAGTAGGGCATTGTACGCT 59.536 55.000 0.00 0.00 0.00 5.07
5103 5351 2.100989 GGGCATCGTATAGGAGTAGGG 58.899 57.143 1.16 0.00 0.00 3.53
5146 5397 1.952296 CTCTGCAGGTCAGCACTTTTT 59.048 47.619 15.13 0.00 42.56 1.94
5147 5398 1.602311 CTCTGCAGGTCAGCACTTTT 58.398 50.000 15.13 0.00 42.56 2.27
5148 5399 0.250640 CCTCTGCAGGTCAGCACTTT 60.251 55.000 15.13 0.00 42.56 2.66
5191 5442 3.787001 CTTCTCCCCCTCCACCGC 61.787 72.222 0.00 0.00 0.00 5.68
5192 5443 3.787001 GCTTCTCCCCCTCCACCG 61.787 72.222 0.00 0.00 0.00 4.94
5193 5444 3.412408 GGCTTCTCCCCCTCCACC 61.412 72.222 0.00 0.00 0.00 4.61
5194 5445 2.610859 TGGCTTCTCCCCCTCCAC 60.611 66.667 0.00 0.00 0.00 4.02
5213 5470 2.418910 CGGCATCCTCTCCGTCAGT 61.419 63.158 0.00 0.00 40.72 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.