Multiple sequence alignment - TraesCS2B01G224000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G224000 chr2B 100.000 4124 0 0 1 4124 214280145 214284268 0.000000e+00 7616.0
1 TraesCS2B01G224000 chr2B 91.337 2551 179 16 622 3161 214312581 214315100 0.000000e+00 3448.0
2 TraesCS2B01G224000 chr2B 90.217 184 9 6 421 596 214312320 214312502 8.920000e-57 231.0
3 TraesCS2B01G224000 chr2B 92.727 55 1 3 261 313 214312234 214312287 4.420000e-10 76.8
4 TraesCS2B01G224000 chr2D 95.088 2341 98 4 1010 3333 156592469 156594809 0.000000e+00 3670.0
5 TraesCS2B01G224000 chr2D 92.474 2551 169 11 622 3161 156707093 156709631 0.000000e+00 3626.0
6 TraesCS2B01G224000 chr2D 90.312 2663 204 26 522 3159 182576387 182573754 0.000000e+00 3439.0
7 TraesCS2B01G224000 chr2D 90.588 170 13 3 434 601 156706876 156707044 5.370000e-54 222.0
8 TraesCS2B01G224000 chr2D 85.586 111 12 3 413 523 182576543 182576437 3.370000e-21 113.0
9 TraesCS2B01G224000 chr2D 88.889 90 9 1 323 412 381885192 381885104 4.360000e-20 110.0
10 TraesCS2B01G224000 chr2D 89.024 82 3 2 3381 3462 156594815 156594890 3.390000e-16 97.1
11 TraesCS2B01G224000 chr2D 94.444 54 1 2 261 313 156706808 156706860 9.500000e-12 82.4
12 TraesCS2B01G224000 chr1B 90.596 2733 199 28 622 3330 148416635 148413937 0.000000e+00 3570.0
13 TraesCS2B01G224000 chr1B 95.205 292 13 1 3513 3804 223787931 223788221 1.040000e-125 460.0
14 TraesCS2B01G224000 chr1B 89.614 337 16 6 3804 4121 223788278 223788614 1.070000e-110 411.0
15 TraesCS2B01G224000 chr1B 88.450 329 19 2 3804 4113 679125658 679125330 3.010000e-101 379.0
16 TraesCS2B01G224000 chr1B 100.000 30 0 0 3350 3379 94985858 94985829 5.760000e-04 56.5
17 TraesCS2B01G224000 chr2A 90.977 2671 195 25 527 3159 197566676 197564014 0.000000e+00 3555.0
18 TraesCS2B01G224000 chr2A 91.817 2554 182 14 622 3161 166627719 166630259 0.000000e+00 3533.0
19 TraesCS2B01G224000 chr2A 89.324 1021 93 12 704 1720 197344827 197343819 0.000000e+00 1267.0
20 TraesCS2B01G224000 chr2A 90.179 336 33 0 3470 3805 634888860 634889195 4.890000e-119 438.0
21 TraesCS2B01G224000 chr2A 92.233 206 10 2 3922 4121 33589947 33590152 1.880000e-73 287.0
22 TraesCS2B01G224000 chr2A 87.795 254 11 8 3097 3333 166256549 166256799 3.140000e-71 279.0
23 TraesCS2B01G224000 chr2A 85.965 114 9 3 410 517 166627469 166627581 9.370000e-22 115.0
24 TraesCS2B01G224000 chr2A 90.244 82 1 3 3381 3462 166256805 166256879 2.620000e-17 100.0
25 TraesCS2B01G224000 chr2A 73.964 169 31 9 3170 3332 197563986 197563825 5.760000e-04 56.5
26 TraesCS2B01G224000 chr1D 90.215 2739 210 28 622 3330 93105528 93102818 0.000000e+00 3520.0
27 TraesCS2B01G224000 chr1D 88.372 86 7 2 323 408 406664978 406665060 2.620000e-17 100.0
28 TraesCS2B01G224000 chr1A 91.507 2402 176 14 960 3338 90163538 90161142 0.000000e+00 3280.0
29 TraesCS2B01G224000 chr1A 92.239 335 26 0 3470 3804 569788171 569787837 3.730000e-130 475.0
30 TraesCS2B01G224000 chr1A 86.380 279 22 10 622 888 90163827 90163553 1.450000e-74 291.0
31 TraesCS2B01G224000 chr3B 95.322 342 16 0 3463 3804 605679442 605679101 1.010000e-150 544.0
32 TraesCS2B01G224000 chr3B 94.985 339 17 0 3466 3804 99538212 99537874 2.180000e-147 532.0
33 TraesCS2B01G224000 chr3B 94.135 341 20 0 3464 3804 602439685 602440025 1.700000e-143 520.0
34 TraesCS2B01G224000 chr3B 92.962 341 24 0 3464 3804 549875949 549875609 7.960000e-137 497.0
35 TraesCS2B01G224000 chr3B 92.836 335 24 0 3470 3804 696778897 696779231 1.720000e-133 486.0
36 TraesCS2B01G224000 chr3B 90.588 340 13 12 3804 4124 99537817 99537478 2.280000e-117 433.0
37 TraesCS2B01G224000 chr3B 90.294 340 14 3 3804 4124 605679044 605678705 1.060000e-115 427.0
38 TraesCS2B01G224000 chr3B 89.118 340 18 11 3804 4124 549875552 549875213 4.960000e-109 405.0
39 TraesCS2B01G224000 chr3B 89.021 337 18 3 3804 4121 602440082 602440418 2.310000e-107 399.0
40 TraesCS2B01G224000 chr3B 83.721 86 13 1 329 414 44661563 44661647 3.420000e-11 80.5
41 TraesCS2B01G224000 chr4A 92.239 335 26 0 3470 3804 623784231 623783897 3.730000e-130 475.0
42 TraesCS2B01G224000 chr4A 86.905 168 17 5 3958 4121 244492109 244492275 2.530000e-42 183.0
43 TraesCS2B01G224000 chr4A 89.024 82 8 1 321 402 548280271 548280351 2.620000e-17 100.0
44 TraesCS2B01G224000 chr7A 92.857 196 10 1 3933 4124 90433520 90433325 8.730000e-72 281.0
45 TraesCS2B01G224000 chr5D 90.058 171 2 1 3804 3959 418583396 418583226 1.500000e-49 207.0
46 TraesCS2B01G224000 chr5D 86.667 90 8 3 323 412 209316977 209317062 3.390000e-16 97.1
47 TraesCS2B01G224000 chr5B 97.500 80 2 0 3804 3883 506205735 506205656 2.000000e-28 137.0
48 TraesCS2B01G224000 chr5B 83.333 90 9 4 322 408 594886904 594886818 1.230000e-10 78.7
49 TraesCS2B01G224000 chr5A 98.387 62 1 0 3804 3865 533343810 533343749 4.360000e-20 110.0
50 TraesCS2B01G224000 chr7B 89.655 87 6 2 322 408 125765068 125765151 1.570000e-19 108.0
51 TraesCS2B01G224000 chr3A 87.209 86 7 3 323 408 45603268 45603349 1.220000e-15 95.3
52 TraesCS2B01G224000 chr3A 90.476 42 2 2 3337 3378 584750460 584750499 2.000000e-03 54.7
53 TraesCS2B01G224000 chr3D 85.057 87 10 3 325 411 577148815 577148732 7.350000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G224000 chr2B 214280145 214284268 4123 False 7616.000000 7616 100.0000 1 4124 1 chr2B.!!$F1 4123
1 TraesCS2B01G224000 chr2B 214312234 214315100 2866 False 1251.933333 3448 91.4270 261 3161 3 chr2B.!!$F2 2900
2 TraesCS2B01G224000 chr2D 156592469 156594890 2421 False 1883.550000 3670 92.0560 1010 3462 2 chr2D.!!$F1 2452
3 TraesCS2B01G224000 chr2D 182573754 182576543 2789 True 1776.000000 3439 87.9490 413 3159 2 chr2D.!!$R2 2746
4 TraesCS2B01G224000 chr2D 156706808 156709631 2823 False 1310.133333 3626 92.5020 261 3161 3 chr2D.!!$F2 2900
5 TraesCS2B01G224000 chr1B 148413937 148416635 2698 True 3570.000000 3570 90.5960 622 3330 1 chr1B.!!$R2 2708
6 TraesCS2B01G224000 chr1B 223787931 223788614 683 False 435.500000 460 92.4095 3513 4121 2 chr1B.!!$F1 608
7 TraesCS2B01G224000 chr2A 166627469 166630259 2790 False 1824.000000 3533 88.8910 410 3161 2 chr2A.!!$F4 2751
8 TraesCS2B01G224000 chr2A 197563825 197566676 2851 True 1805.750000 3555 82.4705 527 3332 2 chr2A.!!$R2 2805
9 TraesCS2B01G224000 chr2A 197343819 197344827 1008 True 1267.000000 1267 89.3240 704 1720 1 chr2A.!!$R1 1016
10 TraesCS2B01G224000 chr1D 93102818 93105528 2710 True 3520.000000 3520 90.2150 622 3330 1 chr1D.!!$R1 2708
11 TraesCS2B01G224000 chr1A 90161142 90163827 2685 True 1785.500000 3280 88.9435 622 3338 2 chr1A.!!$R2 2716
12 TraesCS2B01G224000 chr3B 605678705 605679442 737 True 485.500000 544 92.8080 3463 4124 2 chr3B.!!$R3 661
13 TraesCS2B01G224000 chr3B 99537478 99538212 734 True 482.500000 532 92.7865 3466 4124 2 chr3B.!!$R1 658
14 TraesCS2B01G224000 chr3B 602439685 602440418 733 False 459.500000 520 91.5780 3464 4121 2 chr3B.!!$F3 657
15 TraesCS2B01G224000 chr3B 549875213 549875949 736 True 451.000000 497 91.0400 3464 4124 2 chr3B.!!$R2 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.099436 GAACGATGAAGCATGTGGGC 59.901 55.0 0.0 0.0 0.00 5.36 F
241 242 0.171903 GATGAAGCATGTGGGCACAC 59.828 55.0 13.6 13.6 45.05 3.82 F
1945 2155 0.178998 GGCCATCATGGAGCACATCT 60.179 55.0 8.3 0.0 40.96 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 2015 0.178992 TTCAGCAAGGACACCAAGGG 60.179 55.0 0.00 0.00 0.00 3.95 R
2193 2403 0.539438 GCCTGGTGTTGTCCATGGAA 60.539 55.0 18.20 4.13 36.84 3.53 R
3626 3872 0.984109 GAATTGTTCATGCAACGCGG 59.016 50.0 12.47 0.00 37.90 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.361104 GCCTGGGGCGTCAATCAA 60.361 61.111 0.00 0.00 39.62 2.57
19 20 1.754234 GCCTGGGGCGTCAATCAAT 60.754 57.895 0.00 0.00 39.62 2.57
20 21 1.728490 GCCTGGGGCGTCAATCAATC 61.728 60.000 0.00 0.00 39.62 2.67
21 22 1.103398 CCTGGGGCGTCAATCAATCC 61.103 60.000 0.00 0.00 0.00 3.01
22 23 0.107017 CTGGGGCGTCAATCAATCCT 60.107 55.000 0.00 0.00 0.00 3.24
23 24 1.140852 CTGGGGCGTCAATCAATCCTA 59.859 52.381 0.00 0.00 0.00 2.94
24 25 1.140852 TGGGGCGTCAATCAATCCTAG 59.859 52.381 0.00 0.00 0.00 3.02
25 26 1.543429 GGGGCGTCAATCAATCCTAGG 60.543 57.143 0.82 0.82 0.00 3.02
26 27 1.141053 GGGCGTCAATCAATCCTAGGT 59.859 52.381 9.08 0.00 0.00 3.08
27 28 2.484889 GGCGTCAATCAATCCTAGGTC 58.515 52.381 9.08 0.00 0.00 3.85
28 29 2.484889 GCGTCAATCAATCCTAGGTCC 58.515 52.381 9.08 0.00 0.00 4.46
29 30 2.743938 CGTCAATCAATCCTAGGTCCG 58.256 52.381 9.08 0.00 0.00 4.79
30 31 2.484889 GTCAATCAATCCTAGGTCCGC 58.515 52.381 9.08 0.00 0.00 5.54
31 32 1.416401 TCAATCAATCCTAGGTCCGCC 59.584 52.381 9.08 0.00 0.00 6.13
32 33 1.140852 CAATCAATCCTAGGTCCGCCA 59.859 52.381 9.08 0.00 37.19 5.69
33 34 0.759346 ATCAATCCTAGGTCCGCCAC 59.241 55.000 9.08 0.00 37.19 5.01
34 35 0.325296 TCAATCCTAGGTCCGCCACT 60.325 55.000 9.08 0.00 37.19 4.00
35 36 0.179073 CAATCCTAGGTCCGCCACTG 60.179 60.000 9.08 0.00 37.19 3.66
36 37 0.617820 AATCCTAGGTCCGCCACTGT 60.618 55.000 9.08 0.00 37.19 3.55
37 38 0.617820 ATCCTAGGTCCGCCACTGTT 60.618 55.000 9.08 0.00 37.19 3.16
38 39 1.218316 CCTAGGTCCGCCACTGTTC 59.782 63.158 0.00 0.00 37.19 3.18
39 40 1.541310 CCTAGGTCCGCCACTGTTCA 61.541 60.000 0.00 0.00 37.19 3.18
40 41 0.537188 CTAGGTCCGCCACTGTTCAT 59.463 55.000 0.00 0.00 37.19 2.57
41 42 1.754803 CTAGGTCCGCCACTGTTCATA 59.245 52.381 0.00 0.00 37.19 2.15
42 43 0.537188 AGGTCCGCCACTGTTCATAG 59.463 55.000 0.00 0.00 37.19 2.23
43 44 0.462047 GGTCCGCCACTGTTCATAGG 60.462 60.000 0.00 0.00 34.09 2.57
44 45 0.462047 GTCCGCCACTGTTCATAGGG 60.462 60.000 0.00 0.00 0.00 3.53
45 46 1.819632 CCGCCACTGTTCATAGGGC 60.820 63.158 0.00 0.00 41.20 5.19
46 47 1.221840 CGCCACTGTTCATAGGGCT 59.778 57.895 0.00 0.00 42.43 5.19
47 48 0.811616 CGCCACTGTTCATAGGGCTC 60.812 60.000 0.00 0.00 42.43 4.70
48 49 0.253044 GCCACTGTTCATAGGGCTCA 59.747 55.000 0.00 0.00 41.39 4.26
49 50 1.133976 GCCACTGTTCATAGGGCTCAT 60.134 52.381 0.00 0.00 41.39 2.90
50 51 2.569059 CCACTGTTCATAGGGCTCATG 58.431 52.381 0.00 0.00 0.00 3.07
51 52 2.092753 CCACTGTTCATAGGGCTCATGT 60.093 50.000 0.00 0.00 0.00 3.21
52 53 2.941064 CACTGTTCATAGGGCTCATGTG 59.059 50.000 0.00 0.00 0.00 3.21
53 54 2.573462 ACTGTTCATAGGGCTCATGTGT 59.427 45.455 0.00 0.00 0.00 3.72
54 55 3.774766 ACTGTTCATAGGGCTCATGTGTA 59.225 43.478 0.00 0.00 0.00 2.90
55 56 4.225042 ACTGTTCATAGGGCTCATGTGTAA 59.775 41.667 0.00 0.00 0.00 2.41
56 57 4.513442 TGTTCATAGGGCTCATGTGTAAC 58.487 43.478 0.00 0.00 37.35 2.50
57 58 3.838244 TCATAGGGCTCATGTGTAACC 57.162 47.619 0.00 0.00 34.36 2.85
58 59 3.111484 TCATAGGGCTCATGTGTAACCA 58.889 45.455 0.00 0.00 34.36 3.67
59 60 3.134623 TCATAGGGCTCATGTGTAACCAG 59.865 47.826 0.00 0.00 34.36 4.00
60 61 1.656587 AGGGCTCATGTGTAACCAGA 58.343 50.000 0.00 0.00 34.36 3.86
61 62 1.556911 AGGGCTCATGTGTAACCAGAG 59.443 52.381 0.00 0.00 39.04 3.35
62 63 1.279271 GGGCTCATGTGTAACCAGAGT 59.721 52.381 0.00 0.00 38.50 3.24
63 64 2.500098 GGGCTCATGTGTAACCAGAGTA 59.500 50.000 0.00 0.00 38.50 2.59
64 65 3.055385 GGGCTCATGTGTAACCAGAGTAA 60.055 47.826 0.00 0.00 38.50 2.24
65 66 3.933332 GGCTCATGTGTAACCAGAGTAAC 59.067 47.826 0.00 0.00 38.50 2.50
66 67 3.933332 GCTCATGTGTAACCAGAGTAACC 59.067 47.826 0.00 0.00 38.50 2.85
67 68 4.562757 GCTCATGTGTAACCAGAGTAACCA 60.563 45.833 0.00 0.00 38.50 3.67
68 69 4.890088 TCATGTGTAACCAGAGTAACCAC 58.110 43.478 0.00 0.00 34.36 4.16
69 70 4.591498 TCATGTGTAACCAGAGTAACCACT 59.409 41.667 0.00 0.00 34.27 4.00
70 71 4.595762 TGTGTAACCAGAGTAACCACTC 57.404 45.455 0.00 0.00 44.00 3.51
71 72 3.962063 TGTGTAACCAGAGTAACCACTCA 59.038 43.478 7.48 0.00 45.27 3.41
72 73 4.038763 TGTGTAACCAGAGTAACCACTCAG 59.961 45.833 7.48 0.00 45.27 3.35
73 74 6.158741 TGTGTAACCAGAGTAACCACTCAGA 61.159 44.000 7.48 0.00 45.27 3.27
74 75 8.130401 TGTGTAACCAGAGTAACCACTCAGAC 62.130 46.154 7.48 0.00 45.27 3.51
84 85 6.979465 AGTAACCACTCAGACAAAGTACTAC 58.021 40.000 0.00 0.00 0.00 2.73
85 86 4.868314 ACCACTCAGACAAAGTACTACC 57.132 45.455 0.00 0.00 0.00 3.18
86 87 4.481072 ACCACTCAGACAAAGTACTACCT 58.519 43.478 0.00 0.00 0.00 3.08
87 88 4.523558 ACCACTCAGACAAAGTACTACCTC 59.476 45.833 0.00 0.00 0.00 3.85
88 89 4.082136 CCACTCAGACAAAGTACTACCTCC 60.082 50.000 0.00 0.00 0.00 4.30
89 90 3.757493 ACTCAGACAAAGTACTACCTCCG 59.243 47.826 0.00 0.00 0.00 4.63
90 91 3.757493 CTCAGACAAAGTACTACCTCCGT 59.243 47.826 0.00 0.00 0.00 4.69
91 92 3.755378 TCAGACAAAGTACTACCTCCGTC 59.245 47.826 0.00 0.00 0.00 4.79
92 93 3.087781 AGACAAAGTACTACCTCCGTCC 58.912 50.000 0.00 0.00 0.00 4.79
93 94 2.165234 GACAAAGTACTACCTCCGTCCC 59.835 54.545 0.00 0.00 0.00 4.46
94 95 2.173519 CAAAGTACTACCTCCGTCCCA 58.826 52.381 0.00 0.00 0.00 4.37
95 96 2.564062 CAAAGTACTACCTCCGTCCCAA 59.436 50.000 0.00 0.00 0.00 4.12
96 97 2.610438 AGTACTACCTCCGTCCCAAA 57.390 50.000 0.00 0.00 0.00 3.28
97 98 3.111741 AGTACTACCTCCGTCCCAAAT 57.888 47.619 0.00 0.00 0.00 2.32
98 99 3.447950 AGTACTACCTCCGTCCCAAATT 58.552 45.455 0.00 0.00 0.00 1.82
99 100 2.781681 ACTACCTCCGTCCCAAATTG 57.218 50.000 0.00 0.00 0.00 2.32
100 101 1.982958 ACTACCTCCGTCCCAAATTGT 59.017 47.619 0.00 0.00 0.00 2.71
101 102 3.175594 ACTACCTCCGTCCCAAATTGTA 58.824 45.455 0.00 0.00 0.00 2.41
102 103 3.583966 ACTACCTCCGTCCCAAATTGTAA 59.416 43.478 0.00 0.00 0.00 2.41
103 104 3.067684 ACCTCCGTCCCAAATTGTAAG 57.932 47.619 0.00 0.00 0.00 2.34
104 105 2.640826 ACCTCCGTCCCAAATTGTAAGA 59.359 45.455 0.00 0.00 0.00 2.10
105 106 3.007635 CCTCCGTCCCAAATTGTAAGAC 58.992 50.000 0.00 0.00 0.00 3.01
107 108 2.037511 TCCGTCCCAAATTGTAAGACGT 59.962 45.455 20.71 0.00 46.62 4.34
108 109 3.257873 TCCGTCCCAAATTGTAAGACGTA 59.742 43.478 20.71 9.42 46.62 3.57
109 110 4.081531 TCCGTCCCAAATTGTAAGACGTAT 60.082 41.667 20.71 0.00 46.62 3.06
110 111 4.632688 CCGTCCCAAATTGTAAGACGTATT 59.367 41.667 20.71 0.00 46.62 1.89
111 112 5.446741 CCGTCCCAAATTGTAAGACGTATTG 60.447 44.000 20.71 8.68 46.62 1.90
112 113 5.121142 CGTCCCAAATTGTAAGACGTATTGT 59.879 40.000 16.85 0.00 43.89 2.71
113 114 6.347888 CGTCCCAAATTGTAAGACGTATTGTT 60.348 38.462 16.85 0.00 43.89 2.83
114 115 7.148606 CGTCCCAAATTGTAAGACGTATTGTTA 60.149 37.037 16.85 0.00 43.89 2.41
115 116 8.173130 GTCCCAAATTGTAAGACGTATTGTTAG 58.827 37.037 5.52 0.00 0.00 2.34
116 117 7.334921 TCCCAAATTGTAAGACGTATTGTTAGG 59.665 37.037 5.52 0.00 0.00 2.69
117 118 6.964934 CCAAATTGTAAGACGTATTGTTAGGC 59.035 38.462 5.52 0.00 0.00 3.93
118 119 6.673154 AATTGTAAGACGTATTGTTAGGCC 57.327 37.500 5.52 0.00 0.00 5.19
119 120 4.804868 TGTAAGACGTATTGTTAGGCCA 57.195 40.909 5.01 0.00 0.00 5.36
120 121 5.347620 TGTAAGACGTATTGTTAGGCCAT 57.652 39.130 5.01 0.00 0.00 4.40
121 122 5.736813 TGTAAGACGTATTGTTAGGCCATT 58.263 37.500 5.01 0.00 0.00 3.16
122 123 6.174760 TGTAAGACGTATTGTTAGGCCATTT 58.825 36.000 5.01 0.00 0.00 2.32
123 124 6.655848 TGTAAGACGTATTGTTAGGCCATTTT 59.344 34.615 5.01 0.00 0.00 1.82
124 125 7.823310 TGTAAGACGTATTGTTAGGCCATTTTA 59.177 33.333 5.01 0.00 0.00 1.52
125 126 6.673154 AGACGTATTGTTAGGCCATTTTAC 57.327 37.500 5.01 0.00 0.00 2.01
126 127 5.587443 AGACGTATTGTTAGGCCATTTTACC 59.413 40.000 5.01 0.00 0.00 2.85
127 128 4.641541 ACGTATTGTTAGGCCATTTTACCC 59.358 41.667 5.01 0.00 0.00 3.69
128 129 4.885325 CGTATTGTTAGGCCATTTTACCCT 59.115 41.667 5.01 0.00 0.00 4.34
129 130 6.056884 CGTATTGTTAGGCCATTTTACCCTA 58.943 40.000 5.01 0.00 0.00 3.53
130 131 6.713450 CGTATTGTTAGGCCATTTTACCCTAT 59.287 38.462 5.01 0.00 31.70 2.57
131 132 7.094933 CGTATTGTTAGGCCATTTTACCCTATC 60.095 40.741 5.01 0.00 31.70 2.08
132 133 5.718801 TGTTAGGCCATTTTACCCTATCA 57.281 39.130 5.01 0.00 31.70 2.15
133 134 6.080969 TGTTAGGCCATTTTACCCTATCAA 57.919 37.500 5.01 0.00 31.44 2.57
134 135 6.494952 TGTTAGGCCATTTTACCCTATCAAA 58.505 36.000 5.01 0.00 31.44 2.69
135 136 6.954684 TGTTAGGCCATTTTACCCTATCAAAA 59.045 34.615 5.01 0.00 31.44 2.44
136 137 7.123547 TGTTAGGCCATTTTACCCTATCAAAAG 59.876 37.037 5.01 0.00 31.44 2.27
137 138 5.837829 AGGCCATTTTACCCTATCAAAAGA 58.162 37.500 5.01 0.00 0.00 2.52
138 139 6.443832 AGGCCATTTTACCCTATCAAAAGAT 58.556 36.000 5.01 0.00 0.00 2.40
139 140 6.551227 AGGCCATTTTACCCTATCAAAAGATC 59.449 38.462 5.01 0.00 0.00 2.75
140 141 6.551227 GGCCATTTTACCCTATCAAAAGATCT 59.449 38.462 0.00 0.00 0.00 2.75
141 142 7.069950 GGCCATTTTACCCTATCAAAAGATCTT 59.930 37.037 0.88 0.88 0.00 2.40
142 143 9.131791 GCCATTTTACCCTATCAAAAGATCTTA 57.868 33.333 8.75 0.00 0.00 2.10
171 172 9.899226 ATTTGAAACAGAGAAAGTACAAATAGC 57.101 29.630 0.00 0.00 35.95 2.97
172 173 7.117241 TGAAACAGAGAAAGTACAAATAGCG 57.883 36.000 0.00 0.00 0.00 4.26
173 174 6.926826 TGAAACAGAGAAAGTACAAATAGCGA 59.073 34.615 0.00 0.00 0.00 4.93
174 175 7.602644 TGAAACAGAGAAAGTACAAATAGCGAT 59.397 33.333 0.00 0.00 0.00 4.58
175 176 6.893958 ACAGAGAAAGTACAAATAGCGATG 57.106 37.500 0.00 0.00 0.00 3.84
176 177 5.292101 ACAGAGAAAGTACAAATAGCGATGC 59.708 40.000 0.00 0.00 0.00 3.91
177 178 5.291858 CAGAGAAAGTACAAATAGCGATGCA 59.708 40.000 0.00 0.00 0.00 3.96
178 179 5.874810 AGAGAAAGTACAAATAGCGATGCAA 59.125 36.000 0.00 0.00 0.00 4.08
179 180 5.869350 AGAAAGTACAAATAGCGATGCAAC 58.131 37.500 0.00 0.00 0.00 4.17
180 181 5.411361 AGAAAGTACAAATAGCGATGCAACA 59.589 36.000 0.00 0.00 0.00 3.33
181 182 4.600012 AGTACAAATAGCGATGCAACAC 57.400 40.909 0.00 0.00 0.00 3.32
182 183 4.000325 AGTACAAATAGCGATGCAACACA 59.000 39.130 0.00 0.00 0.00 3.72
183 184 3.476295 ACAAATAGCGATGCAACACAG 57.524 42.857 0.00 0.00 0.00 3.66
184 185 3.073678 ACAAATAGCGATGCAACACAGA 58.926 40.909 0.00 0.00 0.00 3.41
185 186 3.501828 ACAAATAGCGATGCAACACAGAA 59.498 39.130 0.00 0.00 0.00 3.02
186 187 4.023279 ACAAATAGCGATGCAACACAGAAA 60.023 37.500 0.00 0.00 0.00 2.52
187 188 3.747099 ATAGCGATGCAACACAGAAAC 57.253 42.857 0.00 0.00 0.00 2.78
188 189 1.308047 AGCGATGCAACACAGAAACA 58.692 45.000 0.00 0.00 0.00 2.83
189 190 1.881973 AGCGATGCAACACAGAAACAT 59.118 42.857 0.00 0.00 0.00 2.71
190 191 3.073678 AGCGATGCAACACAGAAACATA 58.926 40.909 0.00 0.00 0.00 2.29
191 192 3.120199 AGCGATGCAACACAGAAACATAC 60.120 43.478 0.00 0.00 0.00 2.39
192 193 3.364864 GCGATGCAACACAGAAACATACA 60.365 43.478 0.00 0.00 0.00 2.29
193 194 4.672542 GCGATGCAACACAGAAACATACAT 60.673 41.667 0.00 0.00 0.00 2.29
194 195 5.447144 GCGATGCAACACAGAAACATACATA 60.447 40.000 0.00 0.00 0.00 2.29
195 196 6.187480 CGATGCAACACAGAAACATACATAG 58.813 40.000 0.00 0.00 0.00 2.23
196 197 6.183360 CGATGCAACACAGAAACATACATAGT 60.183 38.462 0.00 0.00 0.00 2.12
197 198 6.239908 TGCAACACAGAAACATACATAGTG 57.760 37.500 0.00 0.00 0.00 2.74
198 199 5.762711 TGCAACACAGAAACATACATAGTGT 59.237 36.000 0.00 0.00 40.10 3.55
199 200 6.931840 TGCAACACAGAAACATACATAGTGTA 59.068 34.615 0.00 0.00 37.72 2.90
200 201 7.606073 TGCAACACAGAAACATACATAGTGTAT 59.394 33.333 0.00 0.00 43.81 2.29
201 202 9.093970 GCAACACAGAAACATACATAGTGTATA 57.906 33.333 2.57 0.00 41.28 1.47
204 205 9.582431 ACACAGAAACATACATAGTGTATACAC 57.418 33.333 25.51 25.51 41.28 2.90
208 209 9.764363 AGAAACATACATAGTGTATACACCATG 57.236 33.333 30.69 30.69 46.52 3.66
209 210 7.962964 AACATACATAGTGTATACACCATGC 57.037 36.000 31.65 12.04 45.55 4.06
210 211 7.303182 ACATACATAGTGTATACACCATGCT 57.697 36.000 31.65 23.62 45.55 3.79
211 212 7.735917 ACATACATAGTGTATACACCATGCTT 58.264 34.615 31.65 21.47 45.55 3.91
212 213 8.866093 ACATACATAGTGTATACACCATGCTTA 58.134 33.333 31.65 22.27 45.55 3.09
213 214 9.705290 CATACATAGTGTATACACCATGCTTAA 57.295 33.333 31.65 20.34 45.55 1.85
216 217 9.627123 ACATAGTGTATACACCATGCTTAATTT 57.373 29.630 31.65 15.97 45.55 1.82
221 222 9.072294 GTGTATACACCATGCTTAATTTTGAAC 57.928 33.333 23.03 0.00 40.85 3.18
222 223 7.965655 TGTATACACCATGCTTAATTTTGAACG 59.034 33.333 0.08 0.00 0.00 3.95
223 224 5.446143 ACACCATGCTTAATTTTGAACGA 57.554 34.783 0.00 0.00 0.00 3.85
224 225 6.024552 ACACCATGCTTAATTTTGAACGAT 57.975 33.333 0.00 0.00 0.00 3.73
225 226 5.863397 ACACCATGCTTAATTTTGAACGATG 59.137 36.000 0.00 0.00 0.00 3.84
226 227 6.092092 CACCATGCTTAATTTTGAACGATGA 58.908 36.000 0.00 0.00 0.00 2.92
227 228 6.585702 CACCATGCTTAATTTTGAACGATGAA 59.414 34.615 0.00 0.00 0.00 2.57
228 229 6.808212 ACCATGCTTAATTTTGAACGATGAAG 59.192 34.615 0.00 0.00 0.00 3.02
229 230 6.237648 CCATGCTTAATTTTGAACGATGAAGC 60.238 38.462 0.00 0.00 39.29 3.86
230 231 5.767269 TGCTTAATTTTGAACGATGAAGCA 58.233 33.333 7.91 7.91 43.91 3.91
231 232 6.389091 TGCTTAATTTTGAACGATGAAGCAT 58.611 32.000 7.91 0.00 42.20 3.79
232 233 6.308524 TGCTTAATTTTGAACGATGAAGCATG 59.691 34.615 7.91 0.00 42.20 4.06
233 234 6.308766 GCTTAATTTTGAACGATGAAGCATGT 59.691 34.615 0.00 0.00 38.87 3.21
234 235 7.565450 TTAATTTTGAACGATGAAGCATGTG 57.435 32.000 0.00 0.00 0.00 3.21
235 236 3.557577 TTTGAACGATGAAGCATGTGG 57.442 42.857 0.00 0.00 0.00 4.17
236 237 1.452110 TGAACGATGAAGCATGTGGG 58.548 50.000 0.00 0.00 0.00 4.61
237 238 0.099436 GAACGATGAAGCATGTGGGC 59.901 55.000 0.00 0.00 0.00 5.36
238 239 0.608856 AACGATGAAGCATGTGGGCA 60.609 50.000 0.00 0.00 35.83 5.36
239 240 1.308069 ACGATGAAGCATGTGGGCAC 61.308 55.000 0.00 0.00 35.83 5.01
240 241 1.307355 CGATGAAGCATGTGGGCACA 61.307 55.000 0.00 0.00 46.44 4.57
241 242 0.171903 GATGAAGCATGTGGGCACAC 59.828 55.000 13.60 13.60 45.05 3.82
264 265 7.093322 ACATTAGTGAGAATCCTTGCAAATC 57.907 36.000 0.00 0.00 0.00 2.17
265 266 6.888632 ACATTAGTGAGAATCCTTGCAAATCT 59.111 34.615 0.00 1.97 0.00 2.40
266 267 6.748333 TTAGTGAGAATCCTTGCAAATCTG 57.252 37.500 0.00 0.00 0.00 2.90
267 268 4.660168 AGTGAGAATCCTTGCAAATCTGT 58.340 39.130 0.00 0.00 0.00 3.41
268 269 5.075493 AGTGAGAATCCTTGCAAATCTGTT 58.925 37.500 0.00 0.00 0.00 3.16
325 337 3.932545 TGGTCAAATGCCATGTTGTAC 57.067 42.857 0.00 0.00 0.00 2.90
326 338 3.495331 TGGTCAAATGCCATGTTGTACT 58.505 40.909 0.00 0.00 0.00 2.73
327 339 3.505680 TGGTCAAATGCCATGTTGTACTC 59.494 43.478 0.00 0.00 0.00 2.59
329 341 3.088532 TCAAATGCCATGTTGTACTCCC 58.911 45.455 0.00 0.00 0.00 4.30
330 342 3.091545 CAAATGCCATGTTGTACTCCCT 58.908 45.455 0.00 0.00 0.00 4.20
331 343 2.717639 ATGCCATGTTGTACTCCCTC 57.282 50.000 0.00 0.00 0.00 4.30
333 345 0.462047 GCCATGTTGTACTCCCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
335 347 2.104967 CCATGTTGTACTCCCTCCGTA 58.895 52.381 0.00 0.00 0.00 4.02
336 348 2.498481 CCATGTTGTACTCCCTCCGTAA 59.502 50.000 0.00 0.00 0.00 3.18
337 349 3.134081 CCATGTTGTACTCCCTCCGTAAT 59.866 47.826 0.00 0.00 0.00 1.89
338 350 3.880047 TGTTGTACTCCCTCCGTAATG 57.120 47.619 0.00 0.00 0.00 1.90
339 351 3.433343 TGTTGTACTCCCTCCGTAATGA 58.567 45.455 0.00 0.00 0.00 2.57
340 352 3.833650 TGTTGTACTCCCTCCGTAATGAA 59.166 43.478 0.00 0.00 0.00 2.57
341 353 4.283978 TGTTGTACTCCCTCCGTAATGAAA 59.716 41.667 0.00 0.00 0.00 2.69
342 354 5.046159 TGTTGTACTCCCTCCGTAATGAAAT 60.046 40.000 0.00 0.00 0.00 2.17
343 355 6.154877 TGTTGTACTCCCTCCGTAATGAAATA 59.845 38.462 0.00 0.00 0.00 1.40
344 356 6.989155 TGTACTCCCTCCGTAATGAAATAT 57.011 37.500 0.00 0.00 0.00 1.28
345 357 8.362639 GTTGTACTCCCTCCGTAATGAAATATA 58.637 37.037 0.00 0.00 0.00 0.86
346 358 8.660295 TGTACTCCCTCCGTAATGAAATATAT 57.340 34.615 0.00 0.00 0.00 0.86
347 359 8.528643 TGTACTCCCTCCGTAATGAAATATATG 58.471 37.037 0.00 0.00 0.00 1.78
348 360 7.792364 ACTCCCTCCGTAATGAAATATATGA 57.208 36.000 0.00 0.00 0.00 2.15
349 361 8.380742 ACTCCCTCCGTAATGAAATATATGAT 57.619 34.615 0.00 0.00 0.00 2.45
350 362 8.478877 ACTCCCTCCGTAATGAAATATATGATC 58.521 37.037 0.00 0.00 0.00 2.92
351 363 8.609617 TCCCTCCGTAATGAAATATATGATCT 57.390 34.615 0.00 0.00 0.00 2.75
352 364 9.709387 TCCCTCCGTAATGAAATATATGATCTA 57.291 33.333 0.00 0.00 0.00 1.98
424 436 1.614413 GGGACTAAGTCATAGCTCCGG 59.386 57.143 0.00 0.00 34.88 5.14
433 445 3.117963 AGTCATAGCTCCGGTACACTAGT 60.118 47.826 0.00 0.00 0.00 2.57
468 480 5.769662 TGCATTTGTAAAGAACCAGTCTCAT 59.230 36.000 0.00 0.00 34.56 2.90
604 725 2.048597 CAACCGCGTGCAGGAGTA 60.049 61.111 11.29 0.00 0.00 2.59
619 772 1.871080 GAGTATCCCATTGTCGCAGG 58.129 55.000 0.00 0.00 0.00 4.85
620 773 0.179045 AGTATCCCATTGTCGCAGGC 60.179 55.000 0.00 0.00 0.00 4.85
679 835 4.643387 GCACGAGGCCACCAACCT 62.643 66.667 5.01 0.00 41.41 3.50
698 857 4.003788 ACCTTCGTGCTCACCCGG 62.004 66.667 0.00 0.00 0.00 5.73
700 859 4.379243 CTTCGTGCTCACCCGGCT 62.379 66.667 0.00 0.00 0.00 5.52
701 860 2.992689 TTCGTGCTCACCCGGCTA 60.993 61.111 0.00 0.00 0.00 3.93
702 861 2.890847 CTTCGTGCTCACCCGGCTAG 62.891 65.000 0.00 0.00 0.00 3.42
728 889 1.241315 CGGTCAACACAACCATCCCC 61.241 60.000 0.00 0.00 36.53 4.81
741 905 2.291043 ATCCCCGTCACAGTCCACC 61.291 63.158 0.00 0.00 0.00 4.61
796 974 4.243270 CGCTACCTATTTAAATCCTCCCG 58.757 47.826 3.39 0.00 0.00 5.14
837 1017 0.618968 AAGAGCATCCCCGACCTCTT 60.619 55.000 0.00 0.00 39.21 2.85
887 1072 1.400846 CTGCTCCACACATTCATCAGC 59.599 52.381 0.00 0.00 0.00 4.26
955 1147 3.449377 TCTCTACTCGAGCTCTTCTCTCA 59.551 47.826 13.61 0.00 39.70 3.27
962 1165 2.030363 CGAGCTCTTCTCTCACAACTGT 60.030 50.000 12.85 0.00 39.70 3.55
966 1170 3.312828 CTCTTCTCTCACAACTGTTCCG 58.687 50.000 0.00 0.00 0.00 4.30
1728 1938 1.375140 CTTCTTCGAGCTGCAGCCA 60.375 57.895 34.39 16.66 43.38 4.75
1800 2010 3.250762 CGTCCATTGTTCTCTTTGAAGCA 59.749 43.478 0.00 0.00 35.01 3.91
1805 2015 5.232838 CCATTGTTCTCTTTGAAGCAAACAC 59.767 40.000 9.03 0.00 35.01 3.32
1945 2155 0.178998 GGCCATCATGGAGCACATCT 60.179 55.000 8.30 0.00 40.96 2.90
1999 2209 1.374758 CTTGGTGAGCTCGACCCAC 60.375 63.158 23.92 12.03 31.84 4.61
2085 2295 2.125912 GTCATCCGTGCAGCGACT 60.126 61.111 9.75 0.00 44.77 4.18
2208 2418 1.339929 GGTGTTTCCATGGACAACACC 59.660 52.381 39.88 39.88 46.01 4.16
2256 2466 2.507484 CTCATGTTTGCCCAGTTCTCA 58.493 47.619 0.00 0.00 0.00 3.27
2301 2511 2.097978 ATGGCTTGCCCTCCAACCTT 62.098 55.000 9.35 0.00 35.75 3.50
2373 2583 0.179076 CCATGGCGTCATACTGCTCA 60.179 55.000 0.16 0.00 31.33 4.26
2454 2664 0.893447 AAGACGTTAACTCCCTCGGG 59.107 55.000 3.71 0.00 0.00 5.14
2580 2790 1.126846 GAGAATGTCAAGAACGCCGTG 59.873 52.381 0.00 0.00 0.00 4.94
2614 2824 0.543174 AAGAGTGGCTCGGAAGACCT 60.543 55.000 0.00 0.00 35.36 3.85
2630 2840 5.241506 GGAAGACCTTGATCACAAATGACAA 59.758 40.000 0.00 0.00 37.79 3.18
2679 2889 0.116143 AGAAGGACCTGCTCCAGACT 59.884 55.000 0.00 0.00 42.46 3.24
2757 2967 0.460811 TCATGAAGAAGATGCGCGCT 60.461 50.000 33.29 17.95 0.00 5.92
2967 3177 0.379669 CTCTATACCGGTTCGTGCGT 59.620 55.000 15.04 0.00 0.00 5.24
3088 3298 2.183811 CTCTGCTGGAGTGCCTCG 59.816 66.667 0.00 0.00 37.30 4.63
3099 3309 0.616111 AGTGCCTCGAGGAGTGGAAT 60.616 55.000 35.69 5.26 37.39 3.01
3102 3312 1.826024 CCTCGAGGAGTGGAATGGG 59.174 63.158 28.21 0.00 37.39 4.00
3236 3465 3.422890 GTTGATGCATGCAACGTTTTC 57.577 42.857 26.68 16.81 36.63 2.29
3313 3559 8.010733 TCAAGTTGAAATGAATCCAAAGAAGT 57.989 30.769 2.20 0.00 0.00 3.01
3326 3572 4.345257 TCCAAAGAAGTCAGTCTACTGCTT 59.655 41.667 15.13 15.13 45.63 3.91
3333 3579 7.319646 AGAAGTCAGTCTACTGCTTTATCAAG 58.680 38.462 15.86 0.00 43.46 3.02
3334 3580 6.597832 AGTCAGTCTACTGCTTTATCAAGT 57.402 37.500 5.21 0.00 43.46 3.16
3336 3582 7.540299 AGTCAGTCTACTGCTTTATCAAGTAC 58.460 38.462 5.21 0.00 43.46 2.73
3338 3584 8.030106 GTCAGTCTACTGCTTTATCAAGTACTT 58.970 37.037 1.12 1.12 43.46 2.24
3339 3585 8.244802 TCAGTCTACTGCTTTATCAAGTACTTC 58.755 37.037 4.77 0.00 43.46 3.01
3340 3586 7.489757 CAGTCTACTGCTTTATCAAGTACTTCC 59.510 40.741 4.77 0.00 37.15 3.46
3341 3587 7.397761 AGTCTACTGCTTTATCAAGTACTTCCT 59.602 37.037 4.77 0.00 31.86 3.36
3342 3588 7.703197 GTCTACTGCTTTATCAAGTACTTCCTC 59.297 40.741 4.77 0.00 31.86 3.71
3343 3589 6.613153 ACTGCTTTATCAAGTACTTCCTCT 57.387 37.500 4.77 0.00 31.86 3.69
3344 3590 6.402222 ACTGCTTTATCAAGTACTTCCTCTG 58.598 40.000 4.77 0.00 31.86 3.35
3345 3591 6.014156 ACTGCTTTATCAAGTACTTCCTCTGT 60.014 38.462 4.77 0.00 31.86 3.41
3346 3592 7.178628 ACTGCTTTATCAAGTACTTCCTCTGTA 59.821 37.037 4.77 0.00 31.86 2.74
3347 3593 7.903145 TGCTTTATCAAGTACTTCCTCTGTAA 58.097 34.615 4.77 0.00 31.86 2.41
3348 3594 7.817962 TGCTTTATCAAGTACTTCCTCTGTAAC 59.182 37.037 4.77 0.00 31.86 2.50
3349 3595 7.009357 GCTTTATCAAGTACTTCCTCTGTAACG 59.991 40.741 4.77 0.00 31.86 3.18
3350 3596 4.170292 TCAAGTACTTCCTCTGTAACGC 57.830 45.455 4.77 0.00 0.00 4.84
3351 3597 3.825014 TCAAGTACTTCCTCTGTAACGCT 59.175 43.478 4.77 0.00 0.00 5.07
3352 3598 4.082895 TCAAGTACTTCCTCTGTAACGCTC 60.083 45.833 4.77 0.00 0.00 5.03
3353 3599 3.688235 AGTACTTCCTCTGTAACGCTCT 58.312 45.455 0.00 0.00 0.00 4.09
3354 3600 4.080687 AGTACTTCCTCTGTAACGCTCTT 58.919 43.478 0.00 0.00 0.00 2.85
3355 3601 5.251764 AGTACTTCCTCTGTAACGCTCTTA 58.748 41.667 0.00 0.00 0.00 2.10
3356 3602 5.887035 AGTACTTCCTCTGTAACGCTCTTAT 59.113 40.000 0.00 0.00 0.00 1.73
3357 3603 7.052873 AGTACTTCCTCTGTAACGCTCTTATA 58.947 38.462 0.00 0.00 0.00 0.98
3358 3604 6.963083 ACTTCCTCTGTAACGCTCTTATAT 57.037 37.500 0.00 0.00 0.00 0.86
3359 3605 7.349412 ACTTCCTCTGTAACGCTCTTATATT 57.651 36.000 0.00 0.00 0.00 1.28
3360 3606 7.783042 ACTTCCTCTGTAACGCTCTTATATTT 58.217 34.615 0.00 0.00 0.00 1.40
3361 3607 7.921745 ACTTCCTCTGTAACGCTCTTATATTTC 59.078 37.037 0.00 0.00 0.00 2.17
3362 3608 6.746120 TCCTCTGTAACGCTCTTATATTTCC 58.254 40.000 0.00 0.00 0.00 3.13
3363 3609 6.550108 TCCTCTGTAACGCTCTTATATTTCCT 59.450 38.462 0.00 0.00 0.00 3.36
3364 3610 7.069578 TCCTCTGTAACGCTCTTATATTTCCTT 59.930 37.037 0.00 0.00 0.00 3.36
3365 3611 8.358148 CCTCTGTAACGCTCTTATATTTCCTTA 58.642 37.037 0.00 0.00 0.00 2.69
3366 3612 9.182933 CTCTGTAACGCTCTTATATTTCCTTAC 57.817 37.037 0.00 0.00 0.00 2.34
3367 3613 7.859377 TCTGTAACGCTCTTATATTTCCTTACG 59.141 37.037 0.00 0.00 0.00 3.18
3368 3614 7.706159 TGTAACGCTCTTATATTTCCTTACGA 58.294 34.615 0.00 0.00 0.00 3.43
3369 3615 8.190122 TGTAACGCTCTTATATTTCCTTACGAA 58.810 33.333 0.00 0.00 0.00 3.85
3370 3616 7.695869 AACGCTCTTATATTTCCTTACGAAG 57.304 36.000 0.00 0.00 0.00 3.79
3394 3640 4.253685 GAGTACACACATTGCTGTACCAT 58.746 43.478 16.24 4.94 42.53 3.55
3431 3677 5.185454 TGCAGGTCATCGAACAATTAGATT 58.815 37.500 0.00 0.00 0.00 2.40
3626 3872 1.069049 ACCAGTTGCAGAAACAATGGC 59.931 47.619 1.84 0.00 41.61 4.40
3636 3882 2.433231 AAACAATGGCCGCGTTGCAT 62.433 50.000 4.92 0.00 0.00 3.96
3637 3883 2.881827 CAATGGCCGCGTTGCATG 60.882 61.111 4.92 0.00 0.00 4.06
3681 3927 2.053627 CGTTGCAGAAACAATTCCTGC 58.946 47.619 0.00 0.00 38.84 4.85
3872 4175 2.368875 GTTGAAGGTGGACAGGAAGAGA 59.631 50.000 0.00 0.00 0.00 3.10
3971 4289 1.683441 GTGGGGAGAAATCACCGGT 59.317 57.895 0.00 0.00 0.00 5.28
4059 4377 3.870190 GTAGGTTAGCCCCGGCCC 61.870 72.222 1.02 0.00 43.17 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.728490 GATTGATTGACGCCCCAGGC 61.728 60.000 0.00 0.00 46.75 4.85
2 3 1.103398 GGATTGATTGACGCCCCAGG 61.103 60.000 0.00 0.00 0.00 4.45
5 6 1.543429 CCTAGGATTGATTGACGCCCC 60.543 57.143 1.05 0.00 0.00 5.80
7 8 2.484889 GACCTAGGATTGATTGACGCC 58.515 52.381 17.98 0.00 0.00 5.68
8 9 2.484889 GGACCTAGGATTGATTGACGC 58.515 52.381 17.98 0.00 0.00 5.19
9 10 2.743938 CGGACCTAGGATTGATTGACG 58.256 52.381 17.98 2.41 0.00 4.35
10 11 2.484889 GCGGACCTAGGATTGATTGAC 58.515 52.381 17.98 0.00 0.00 3.18
11 12 1.416401 GGCGGACCTAGGATTGATTGA 59.584 52.381 17.98 0.00 0.00 2.57
12 13 1.140852 TGGCGGACCTAGGATTGATTG 59.859 52.381 17.98 0.00 36.63 2.67
13 14 1.141053 GTGGCGGACCTAGGATTGATT 59.859 52.381 17.98 0.00 36.63 2.57
14 15 0.759346 GTGGCGGACCTAGGATTGAT 59.241 55.000 17.98 0.00 36.63 2.57
15 16 0.325296 AGTGGCGGACCTAGGATTGA 60.325 55.000 17.98 0.00 36.63 2.57
16 17 0.179073 CAGTGGCGGACCTAGGATTG 60.179 60.000 17.98 5.12 36.63 2.67
17 18 0.617820 ACAGTGGCGGACCTAGGATT 60.618 55.000 17.98 0.00 36.63 3.01
18 19 0.617820 AACAGTGGCGGACCTAGGAT 60.618 55.000 17.98 0.00 36.63 3.24
19 20 1.229082 AACAGTGGCGGACCTAGGA 60.229 57.895 17.98 0.00 36.63 2.94
20 21 1.218316 GAACAGTGGCGGACCTAGG 59.782 63.158 7.41 7.41 36.63 3.02
21 22 0.537188 ATGAACAGTGGCGGACCTAG 59.463 55.000 0.00 0.00 36.63 3.02
22 23 1.754803 CTATGAACAGTGGCGGACCTA 59.245 52.381 0.00 0.00 36.63 3.08
23 24 0.537188 CTATGAACAGTGGCGGACCT 59.463 55.000 0.00 0.00 36.63 3.85
24 25 0.462047 CCTATGAACAGTGGCGGACC 60.462 60.000 0.00 0.00 0.00 4.46
25 26 0.462047 CCCTATGAACAGTGGCGGAC 60.462 60.000 0.00 0.00 0.00 4.79
26 27 1.904771 CCCTATGAACAGTGGCGGA 59.095 57.895 0.00 0.00 0.00 5.54
27 28 1.819632 GCCCTATGAACAGTGGCGG 60.820 63.158 0.00 0.00 31.55 6.13
28 29 0.811616 GAGCCCTATGAACAGTGGCG 60.812 60.000 0.00 0.00 46.67 5.69
29 30 0.253044 TGAGCCCTATGAACAGTGGC 59.747 55.000 0.00 0.00 42.48 5.01
30 31 2.092753 ACATGAGCCCTATGAACAGTGG 60.093 50.000 0.00 0.00 0.00 4.00
31 32 2.941064 CACATGAGCCCTATGAACAGTG 59.059 50.000 0.00 0.00 0.00 3.66
32 33 2.573462 ACACATGAGCCCTATGAACAGT 59.427 45.455 0.00 0.00 0.00 3.55
33 34 3.272574 ACACATGAGCCCTATGAACAG 57.727 47.619 0.00 0.00 0.00 3.16
34 35 4.513442 GTTACACATGAGCCCTATGAACA 58.487 43.478 0.00 0.00 0.00 3.18
35 36 3.877508 GGTTACACATGAGCCCTATGAAC 59.122 47.826 0.00 0.00 0.00 3.18
36 37 3.521531 TGGTTACACATGAGCCCTATGAA 59.478 43.478 0.00 0.00 0.00 2.57
37 38 3.111484 TGGTTACACATGAGCCCTATGA 58.889 45.455 0.00 0.00 0.00 2.15
38 39 3.134623 TCTGGTTACACATGAGCCCTATG 59.865 47.826 0.00 0.00 0.00 2.23
39 40 3.384168 TCTGGTTACACATGAGCCCTAT 58.616 45.455 0.00 0.00 0.00 2.57
40 41 2.766263 CTCTGGTTACACATGAGCCCTA 59.234 50.000 0.00 0.00 0.00 3.53
41 42 1.556911 CTCTGGTTACACATGAGCCCT 59.443 52.381 0.00 0.00 0.00 5.19
42 43 1.279271 ACTCTGGTTACACATGAGCCC 59.721 52.381 0.00 0.00 0.00 5.19
43 44 2.770164 ACTCTGGTTACACATGAGCC 57.230 50.000 0.00 0.00 0.00 4.70
44 45 3.933332 GGTTACTCTGGTTACACATGAGC 59.067 47.826 0.00 0.00 0.00 4.26
45 46 4.929808 GTGGTTACTCTGGTTACACATGAG 59.070 45.833 0.00 0.00 0.00 2.90
46 47 4.591498 AGTGGTTACTCTGGTTACACATGA 59.409 41.667 0.00 0.00 28.79 3.07
47 48 4.894784 AGTGGTTACTCTGGTTACACATG 58.105 43.478 0.00 0.00 28.79 3.21
60 61 6.015603 GGTAGTACTTTGTCTGAGTGGTTACT 60.016 42.308 0.00 0.00 40.66 2.24
61 62 6.015603 AGGTAGTACTTTGTCTGAGTGGTTAC 60.016 42.308 0.00 0.00 0.00 2.50
62 63 6.073314 AGGTAGTACTTTGTCTGAGTGGTTA 58.927 40.000 0.00 0.00 0.00 2.85
63 64 4.900054 AGGTAGTACTTTGTCTGAGTGGTT 59.100 41.667 0.00 0.00 0.00 3.67
64 65 4.481072 AGGTAGTACTTTGTCTGAGTGGT 58.519 43.478 0.00 0.00 0.00 4.16
65 66 4.082136 GGAGGTAGTACTTTGTCTGAGTGG 60.082 50.000 0.00 0.00 0.00 4.00
66 67 4.379603 CGGAGGTAGTACTTTGTCTGAGTG 60.380 50.000 0.00 0.00 0.00 3.51
67 68 3.757493 CGGAGGTAGTACTTTGTCTGAGT 59.243 47.826 0.00 0.00 0.00 3.41
68 69 3.757493 ACGGAGGTAGTACTTTGTCTGAG 59.243 47.826 0.00 0.00 0.00 3.35
69 70 3.755378 GACGGAGGTAGTACTTTGTCTGA 59.245 47.826 0.00 0.00 0.00 3.27
70 71 3.119566 GGACGGAGGTAGTACTTTGTCTG 60.120 52.174 0.00 3.11 0.00 3.51
71 72 3.087781 GGACGGAGGTAGTACTTTGTCT 58.912 50.000 0.00 0.00 0.00 3.41
72 73 2.165234 GGGACGGAGGTAGTACTTTGTC 59.835 54.545 0.00 5.41 0.00 3.18
73 74 2.174360 GGGACGGAGGTAGTACTTTGT 58.826 52.381 0.00 0.00 0.00 2.83
74 75 2.173519 TGGGACGGAGGTAGTACTTTG 58.826 52.381 0.00 0.00 0.00 2.77
75 76 2.610438 TGGGACGGAGGTAGTACTTT 57.390 50.000 0.00 0.00 0.00 2.66
76 77 2.610438 TTGGGACGGAGGTAGTACTT 57.390 50.000 0.00 0.00 0.00 2.24
77 78 2.610438 TTTGGGACGGAGGTAGTACT 57.390 50.000 0.00 0.00 0.00 2.73
78 79 3.055602 ACAATTTGGGACGGAGGTAGTAC 60.056 47.826 0.78 0.00 0.00 2.73
79 80 3.175594 ACAATTTGGGACGGAGGTAGTA 58.824 45.455 0.78 0.00 0.00 1.82
80 81 1.982958 ACAATTTGGGACGGAGGTAGT 59.017 47.619 0.78 0.00 0.00 2.73
81 82 2.781681 ACAATTTGGGACGGAGGTAG 57.218 50.000 0.78 0.00 0.00 3.18
82 83 3.839490 TCTTACAATTTGGGACGGAGGTA 59.161 43.478 0.78 0.00 0.00 3.08
83 84 2.640826 TCTTACAATTTGGGACGGAGGT 59.359 45.455 0.78 0.00 0.00 3.85
84 85 3.007635 GTCTTACAATTTGGGACGGAGG 58.992 50.000 0.78 0.00 0.00 4.30
85 86 2.671396 CGTCTTACAATTTGGGACGGAG 59.329 50.000 22.14 5.73 43.69 4.63
86 87 2.690786 CGTCTTACAATTTGGGACGGA 58.309 47.619 22.14 5.40 43.69 4.69
89 90 6.490566 ACAATACGTCTTACAATTTGGGAC 57.509 37.500 0.00 5.57 0.00 4.46
90 91 7.334921 CCTAACAATACGTCTTACAATTTGGGA 59.665 37.037 0.00 0.00 0.00 4.37
91 92 7.469260 CCTAACAATACGTCTTACAATTTGGG 58.531 38.462 0.00 0.00 0.00 4.12
92 93 6.964934 GCCTAACAATACGTCTTACAATTTGG 59.035 38.462 0.00 0.00 0.00 3.28
93 94 6.964934 GGCCTAACAATACGTCTTACAATTTG 59.035 38.462 0.00 0.00 0.00 2.32
94 95 6.655848 TGGCCTAACAATACGTCTTACAATTT 59.344 34.615 3.32 0.00 0.00 1.82
95 96 6.174760 TGGCCTAACAATACGTCTTACAATT 58.825 36.000 3.32 0.00 0.00 2.32
96 97 5.736813 TGGCCTAACAATACGTCTTACAAT 58.263 37.500 3.32 0.00 0.00 2.71
97 98 5.149973 TGGCCTAACAATACGTCTTACAA 57.850 39.130 3.32 0.00 0.00 2.41
98 99 4.804868 TGGCCTAACAATACGTCTTACA 57.195 40.909 3.32 0.00 0.00 2.41
99 100 6.673154 AAATGGCCTAACAATACGTCTTAC 57.327 37.500 3.32 0.00 0.00 2.34
100 101 7.280652 GGTAAAATGGCCTAACAATACGTCTTA 59.719 37.037 3.32 0.00 0.00 2.10
101 102 6.094464 GGTAAAATGGCCTAACAATACGTCTT 59.906 38.462 3.32 0.00 0.00 3.01
102 103 5.587443 GGTAAAATGGCCTAACAATACGTCT 59.413 40.000 3.32 0.00 0.00 4.18
103 104 5.220912 GGGTAAAATGGCCTAACAATACGTC 60.221 44.000 3.32 0.00 0.00 4.34
104 105 4.641541 GGGTAAAATGGCCTAACAATACGT 59.358 41.667 3.32 0.00 0.00 3.57
105 106 4.885325 AGGGTAAAATGGCCTAACAATACG 59.115 41.667 3.32 0.00 0.00 3.06
106 107 7.722285 TGATAGGGTAAAATGGCCTAACAATAC 59.278 37.037 3.32 0.00 0.00 1.89
107 108 7.817440 TGATAGGGTAAAATGGCCTAACAATA 58.183 34.615 3.32 0.00 0.00 1.90
108 109 6.678547 TGATAGGGTAAAATGGCCTAACAAT 58.321 36.000 3.32 0.00 0.00 2.71
109 110 6.080969 TGATAGGGTAAAATGGCCTAACAA 57.919 37.500 3.32 0.00 0.00 2.83
110 111 5.718801 TGATAGGGTAAAATGGCCTAACA 57.281 39.130 3.32 0.00 0.00 2.41
111 112 7.340999 TCTTTTGATAGGGTAAAATGGCCTAAC 59.659 37.037 3.32 0.00 0.00 2.34
112 113 7.415086 TCTTTTGATAGGGTAAAATGGCCTAA 58.585 34.615 3.32 0.00 0.00 2.69
113 114 6.975949 TCTTTTGATAGGGTAAAATGGCCTA 58.024 36.000 3.32 0.00 0.00 3.93
114 115 5.837829 TCTTTTGATAGGGTAAAATGGCCT 58.162 37.500 3.32 0.00 0.00 5.19
115 116 6.551227 AGATCTTTTGATAGGGTAAAATGGCC 59.449 38.462 0.00 0.00 39.67 5.36
116 117 7.588497 AGATCTTTTGATAGGGTAAAATGGC 57.412 36.000 0.00 0.00 39.67 4.40
145 146 9.899226 GCTATTTGTACTTTCTCTGTTTCAAAT 57.101 29.630 0.00 0.00 36.22 2.32
146 147 8.067784 CGCTATTTGTACTTTCTCTGTTTCAAA 58.932 33.333 0.00 0.00 0.00 2.69
147 148 7.439955 TCGCTATTTGTACTTTCTCTGTTTCAA 59.560 33.333 0.00 0.00 0.00 2.69
148 149 6.926826 TCGCTATTTGTACTTTCTCTGTTTCA 59.073 34.615 0.00 0.00 0.00 2.69
149 150 7.347508 TCGCTATTTGTACTTTCTCTGTTTC 57.652 36.000 0.00 0.00 0.00 2.78
150 151 7.624344 GCATCGCTATTTGTACTTTCTCTGTTT 60.624 37.037 0.00 0.00 0.00 2.83
151 152 6.183360 GCATCGCTATTTGTACTTTCTCTGTT 60.183 38.462 0.00 0.00 0.00 3.16
152 153 5.292101 GCATCGCTATTTGTACTTTCTCTGT 59.708 40.000 0.00 0.00 0.00 3.41
153 154 5.291858 TGCATCGCTATTTGTACTTTCTCTG 59.708 40.000 0.00 0.00 0.00 3.35
154 155 5.419542 TGCATCGCTATTTGTACTTTCTCT 58.580 37.500 0.00 0.00 0.00 3.10
155 156 5.718649 TGCATCGCTATTTGTACTTTCTC 57.281 39.130 0.00 0.00 0.00 2.87
156 157 5.411361 TGTTGCATCGCTATTTGTACTTTCT 59.589 36.000 0.00 0.00 0.00 2.52
157 158 5.508224 GTGTTGCATCGCTATTTGTACTTTC 59.492 40.000 1.00 0.00 0.00 2.62
158 159 5.049060 TGTGTTGCATCGCTATTTGTACTTT 60.049 36.000 9.58 0.00 0.00 2.66
159 160 4.454161 TGTGTTGCATCGCTATTTGTACTT 59.546 37.500 9.58 0.00 0.00 2.24
160 161 4.000325 TGTGTTGCATCGCTATTTGTACT 59.000 39.130 9.58 0.00 0.00 2.73
161 162 4.092821 TCTGTGTTGCATCGCTATTTGTAC 59.907 41.667 9.58 0.00 0.00 2.90
162 163 4.249661 TCTGTGTTGCATCGCTATTTGTA 58.750 39.130 9.58 0.00 0.00 2.41
163 164 3.073678 TCTGTGTTGCATCGCTATTTGT 58.926 40.909 9.58 0.00 0.00 2.83
164 165 3.745332 TCTGTGTTGCATCGCTATTTG 57.255 42.857 9.58 0.00 0.00 2.32
165 166 4.023279 TGTTTCTGTGTTGCATCGCTATTT 60.023 37.500 9.58 0.00 0.00 1.40
166 167 3.501828 TGTTTCTGTGTTGCATCGCTATT 59.498 39.130 9.58 0.00 0.00 1.73
167 168 3.073678 TGTTTCTGTGTTGCATCGCTAT 58.926 40.909 9.58 0.00 0.00 2.97
168 169 2.488952 TGTTTCTGTGTTGCATCGCTA 58.511 42.857 9.58 0.00 0.00 4.26
169 170 1.308047 TGTTTCTGTGTTGCATCGCT 58.692 45.000 9.58 0.00 0.00 4.93
170 171 2.336554 ATGTTTCTGTGTTGCATCGC 57.663 45.000 1.25 1.25 0.00 4.58
171 172 4.403015 TGTATGTTTCTGTGTTGCATCG 57.597 40.909 0.00 0.00 0.00 3.84
172 173 6.963242 CACTATGTATGTTTCTGTGTTGCATC 59.037 38.462 0.00 0.00 0.00 3.91
173 174 6.430925 ACACTATGTATGTTTCTGTGTTGCAT 59.569 34.615 0.00 0.00 34.10 3.96
174 175 5.762711 ACACTATGTATGTTTCTGTGTTGCA 59.237 36.000 0.00 0.00 34.10 4.08
175 176 6.241207 ACACTATGTATGTTTCTGTGTTGC 57.759 37.500 0.00 0.00 34.10 4.17
178 179 9.582431 GTGTATACACTATGTATGTTTCTGTGT 57.418 33.333 25.56 0.00 42.93 3.72
179 180 9.031360 GGTGTATACACTATGTATGTTTCTGTG 57.969 37.037 29.89 0.00 42.93 3.66
180 181 8.755028 TGGTGTATACACTATGTATGTTTCTGT 58.245 33.333 29.89 0.00 42.93 3.41
181 182 9.764363 ATGGTGTATACACTATGTATGTTTCTG 57.236 33.333 28.06 0.00 44.68 3.02
193 194 9.674068 TCAAAATTAAGCATGGTGTATACACTA 57.326 29.630 29.89 26.34 45.73 2.74
194 195 8.574251 TCAAAATTAAGCATGGTGTATACACT 57.426 30.769 29.89 15.23 45.73 3.55
195 196 9.072294 GTTCAAAATTAAGCATGGTGTATACAC 57.928 33.333 25.00 25.00 45.72 2.90
196 197 7.965655 CGTTCAAAATTAAGCATGGTGTATACA 59.034 33.333 0.08 0.08 0.00 2.29
197 198 8.178964 TCGTTCAAAATTAAGCATGGTGTATAC 58.821 33.333 0.00 0.00 0.00 1.47
198 199 8.270080 TCGTTCAAAATTAAGCATGGTGTATA 57.730 30.769 0.00 0.00 0.00 1.47
199 200 7.151999 TCGTTCAAAATTAAGCATGGTGTAT 57.848 32.000 0.00 0.00 0.00 2.29
200 201 6.561737 TCGTTCAAAATTAAGCATGGTGTA 57.438 33.333 0.00 0.00 0.00 2.90
201 202 5.446143 TCGTTCAAAATTAAGCATGGTGT 57.554 34.783 0.00 0.00 0.00 4.16
202 203 6.092092 TCATCGTTCAAAATTAAGCATGGTG 58.908 36.000 0.00 0.00 0.00 4.17
203 204 6.266168 TCATCGTTCAAAATTAAGCATGGT 57.734 33.333 0.00 0.00 0.00 3.55
204 205 6.237648 GCTTCATCGTTCAAAATTAAGCATGG 60.238 38.462 0.00 0.00 38.33 3.66
205 206 6.308524 TGCTTCATCGTTCAAAATTAAGCATG 59.691 34.615 0.00 0.00 42.10 4.06
206 207 6.389091 TGCTTCATCGTTCAAAATTAAGCAT 58.611 32.000 0.00 0.00 42.10 3.79
207 208 5.767269 TGCTTCATCGTTCAAAATTAAGCA 58.233 33.333 0.00 0.00 44.04 3.91
208 209 6.308766 ACATGCTTCATCGTTCAAAATTAAGC 59.691 34.615 0.00 0.00 38.78 3.09
209 210 7.201376 CCACATGCTTCATCGTTCAAAATTAAG 60.201 37.037 0.00 0.00 0.00 1.85
210 211 6.585702 CCACATGCTTCATCGTTCAAAATTAA 59.414 34.615 0.00 0.00 0.00 1.40
211 212 6.092092 CCACATGCTTCATCGTTCAAAATTA 58.908 36.000 0.00 0.00 0.00 1.40
212 213 4.925054 CCACATGCTTCATCGTTCAAAATT 59.075 37.500 0.00 0.00 0.00 1.82
213 214 4.487948 CCACATGCTTCATCGTTCAAAAT 58.512 39.130 0.00 0.00 0.00 1.82
214 215 3.305267 CCCACATGCTTCATCGTTCAAAA 60.305 43.478 0.00 0.00 0.00 2.44
215 216 2.228582 CCCACATGCTTCATCGTTCAAA 59.771 45.455 0.00 0.00 0.00 2.69
216 217 1.811965 CCCACATGCTTCATCGTTCAA 59.188 47.619 0.00 0.00 0.00 2.69
217 218 1.452110 CCCACATGCTTCATCGTTCA 58.548 50.000 0.00 0.00 0.00 3.18
218 219 0.099436 GCCCACATGCTTCATCGTTC 59.901 55.000 0.00 0.00 0.00 3.95
219 220 0.608856 TGCCCACATGCTTCATCGTT 60.609 50.000 0.00 0.00 0.00 3.85
220 221 1.002257 TGCCCACATGCTTCATCGT 60.002 52.632 0.00 0.00 0.00 3.73
221 222 1.307355 TGTGCCCACATGCTTCATCG 61.307 55.000 0.00 0.00 36.21 3.84
222 223 0.171903 GTGTGCCCACATGCTTCATC 59.828 55.000 4.22 0.00 43.97 2.92
223 224 0.540133 TGTGTGCCCACATGCTTCAT 60.540 50.000 0.00 0.00 46.45 2.57
224 225 1.152798 TGTGTGCCCACATGCTTCA 60.153 52.632 0.00 0.00 46.45 3.02
225 226 3.762293 TGTGTGCCCACATGCTTC 58.238 55.556 0.00 0.00 46.45 3.86
232 233 2.472695 TCTCACTAATGTGTGCCCAC 57.527 50.000 0.00 0.00 44.14 4.61
233 234 3.609853 GATTCTCACTAATGTGTGCCCA 58.390 45.455 0.00 0.00 44.14 5.36
234 235 2.945668 GGATTCTCACTAATGTGTGCCC 59.054 50.000 0.00 0.00 44.14 5.36
235 236 3.878778 AGGATTCTCACTAATGTGTGCC 58.121 45.455 0.00 0.00 44.14 5.01
236 237 4.437930 GCAAGGATTCTCACTAATGTGTGC 60.438 45.833 0.00 0.00 44.14 4.57
237 238 4.696877 TGCAAGGATTCTCACTAATGTGTG 59.303 41.667 0.00 0.00 44.14 3.82
238 239 4.910195 TGCAAGGATTCTCACTAATGTGT 58.090 39.130 0.00 0.00 44.14 3.72
239 240 5.885230 TTGCAAGGATTCTCACTAATGTG 57.115 39.130 0.00 0.00 45.07 3.21
240 241 6.888632 AGATTTGCAAGGATTCTCACTAATGT 59.111 34.615 0.00 0.00 0.00 2.71
241 242 7.148120 ACAGATTTGCAAGGATTCTCACTAATG 60.148 37.037 0.00 0.00 0.00 1.90
242 243 6.888632 ACAGATTTGCAAGGATTCTCACTAAT 59.111 34.615 0.00 0.00 0.00 1.73
243 244 6.240894 ACAGATTTGCAAGGATTCTCACTAA 58.759 36.000 0.00 0.00 0.00 2.24
244 245 5.809001 ACAGATTTGCAAGGATTCTCACTA 58.191 37.500 0.00 0.00 0.00 2.74
245 246 4.660168 ACAGATTTGCAAGGATTCTCACT 58.340 39.130 0.00 0.00 0.00 3.41
246 247 5.048504 TGAACAGATTTGCAAGGATTCTCAC 60.049 40.000 0.00 0.00 0.00 3.51
247 248 5.072055 TGAACAGATTTGCAAGGATTCTCA 58.928 37.500 0.00 0.00 0.00 3.27
248 249 5.633830 TGAACAGATTTGCAAGGATTCTC 57.366 39.130 0.00 0.00 0.00 2.87
249 250 6.409524 TTTGAACAGATTTGCAAGGATTCT 57.590 33.333 0.00 0.00 0.00 2.40
250 251 7.095270 AGATTTGAACAGATTTGCAAGGATTC 58.905 34.615 0.00 2.03 0.00 2.52
251 252 7.001099 AGATTTGAACAGATTTGCAAGGATT 57.999 32.000 0.00 0.00 0.00 3.01
252 253 6.350780 GGAGATTTGAACAGATTTGCAAGGAT 60.351 38.462 0.00 0.00 0.00 3.24
253 254 5.047802 GGAGATTTGAACAGATTTGCAAGGA 60.048 40.000 0.00 0.00 0.00 3.36
254 255 5.047519 AGGAGATTTGAACAGATTTGCAAGG 60.048 40.000 0.00 0.00 0.00 3.61
255 256 5.862323 CAGGAGATTTGAACAGATTTGCAAG 59.138 40.000 0.00 0.00 0.00 4.01
256 257 5.302568 ACAGGAGATTTGAACAGATTTGCAA 59.697 36.000 0.00 0.00 0.00 4.08
257 258 4.828939 ACAGGAGATTTGAACAGATTTGCA 59.171 37.500 0.00 0.00 0.00 4.08
258 259 5.159209 CACAGGAGATTTGAACAGATTTGC 58.841 41.667 0.00 0.00 0.00 3.68
259 260 6.016860 TCACACAGGAGATTTGAACAGATTTG 60.017 38.462 0.00 0.00 0.00 2.32
260 261 6.064060 TCACACAGGAGATTTGAACAGATTT 58.936 36.000 0.00 0.00 0.00 2.17
261 262 5.624159 TCACACAGGAGATTTGAACAGATT 58.376 37.500 0.00 0.00 0.00 2.40
262 263 5.233083 TCACACAGGAGATTTGAACAGAT 57.767 39.130 0.00 0.00 0.00 2.90
263 264 4.687901 TCACACAGGAGATTTGAACAGA 57.312 40.909 0.00 0.00 0.00 3.41
264 265 4.023707 GGTTCACACAGGAGATTTGAACAG 60.024 45.833 13.19 0.00 45.16 3.16
265 266 3.882888 GGTTCACACAGGAGATTTGAACA 59.117 43.478 13.19 0.00 45.16 3.18
266 267 4.137543 AGGTTCACACAGGAGATTTGAAC 58.862 43.478 4.53 4.53 43.47 3.18
267 268 4.437682 AGGTTCACACAGGAGATTTGAA 57.562 40.909 0.00 0.00 0.00 2.69
268 269 4.136796 CAAGGTTCACACAGGAGATTTGA 58.863 43.478 0.00 0.00 0.00 2.69
325 337 8.700051 AGATCATATATTTCATTACGGAGGGAG 58.300 37.037 0.00 0.00 0.00 4.30
326 338 8.609617 AGATCATATATTTCATTACGGAGGGA 57.390 34.615 0.00 0.00 0.00 4.20
393 405 9.080097 GCTATGACTTAGTCCCTCTATAAAGAA 57.920 37.037 10.10 0.00 0.00 2.52
394 406 8.449625 AGCTATGACTTAGTCCCTCTATAAAGA 58.550 37.037 10.10 0.00 0.00 2.52
395 407 8.644374 AGCTATGACTTAGTCCCTCTATAAAG 57.356 38.462 10.10 0.00 0.00 1.85
396 408 7.670559 GGAGCTATGACTTAGTCCCTCTATAAA 59.329 40.741 10.10 0.00 0.00 1.40
397 409 7.176490 GGAGCTATGACTTAGTCCCTCTATAA 58.824 42.308 10.10 0.00 0.00 0.98
398 410 6.576641 CGGAGCTATGACTTAGTCCCTCTATA 60.577 46.154 10.10 0.08 30.45 1.31
399 411 5.576128 GGAGCTATGACTTAGTCCCTCTAT 58.424 45.833 10.10 0.00 0.00 1.98
400 412 4.505215 CGGAGCTATGACTTAGTCCCTCTA 60.505 50.000 10.10 0.00 30.45 2.43
401 413 3.749310 CGGAGCTATGACTTAGTCCCTCT 60.749 52.174 10.10 1.97 30.45 3.69
402 414 2.554893 CGGAGCTATGACTTAGTCCCTC 59.445 54.545 10.10 9.67 30.45 4.30
403 415 2.588620 CGGAGCTATGACTTAGTCCCT 58.411 52.381 10.10 1.18 30.45 4.20
404 416 1.614413 CCGGAGCTATGACTTAGTCCC 59.386 57.143 10.10 1.68 30.45 4.46
405 417 2.308690 ACCGGAGCTATGACTTAGTCC 58.691 52.381 9.46 0.00 0.00 3.85
406 418 3.881688 TGTACCGGAGCTATGACTTAGTC 59.118 47.826 9.46 5.27 0.00 2.59
407 419 3.631227 GTGTACCGGAGCTATGACTTAGT 59.369 47.826 9.46 0.00 0.00 2.24
408 420 3.884091 AGTGTACCGGAGCTATGACTTAG 59.116 47.826 9.46 0.00 0.00 2.18
416 428 2.795231 ACACTAGTGTACCGGAGCTA 57.205 50.000 26.91 3.68 42.90 3.32
433 445 9.619316 GTTCTTTACAAATGCATGTTATGTACA 57.381 29.630 0.00 0.00 41.97 2.90
440 452 6.040842 AGACTGGTTCTTTACAAATGCATGTT 59.959 34.615 0.00 0.00 34.75 2.71
468 480 8.548025 TCCAAGTCCAATTCTTGTATGATTAGA 58.452 33.333 5.06 0.00 40.15 2.10
520 541 2.504032 CATTCGGCGGCCCTCTTA 59.496 61.111 14.55 0.00 0.00 2.10
603 724 0.106708 GAGCCTGCGACAATGGGATA 59.893 55.000 0.00 0.00 0.00 2.59
604 725 1.153086 GAGCCTGCGACAATGGGAT 60.153 57.895 0.00 0.00 0.00 3.85
607 728 3.869272 GCGAGCCTGCGACAATGG 61.869 66.667 0.00 0.00 0.00 3.16
618 771 4.756458 AGACAGCTGCTGCGAGCC 62.756 66.667 28.39 12.83 41.51 4.70
619 772 2.238071 GAAAGACAGCTGCTGCGAGC 62.238 60.000 28.39 15.43 45.42 5.03
620 773 0.669932 AGAAAGACAGCTGCTGCGAG 60.670 55.000 28.39 6.36 45.42 5.03
633 786 6.292150 GGACTTGGAAGAAGAAGAAGAAAGA 58.708 40.000 0.00 0.00 0.00 2.52
698 857 3.766691 TTGACCGCCGGACCTAGC 61.767 66.667 11.71 0.00 0.00 3.42
699 858 2.183555 GTTGACCGCCGGACCTAG 59.816 66.667 11.71 0.00 0.00 3.02
700 859 2.601067 TGTTGACCGCCGGACCTA 60.601 61.111 11.71 0.00 0.00 3.08
701 860 4.309950 GTGTTGACCGCCGGACCT 62.310 66.667 11.71 0.00 0.00 3.85
702 861 4.612412 TGTGTTGACCGCCGGACC 62.612 66.667 11.71 1.00 0.00 4.46
728 889 0.250295 ATTGGTGGTGGACTGTGACG 60.250 55.000 0.00 0.00 0.00 4.35
741 905 1.000359 GGGGAACTGGGGATTGGTG 60.000 63.158 0.00 0.00 0.00 4.17
796 974 4.344104 TCTTGGATGGAAATGGAGGAAAC 58.656 43.478 0.00 0.00 0.00 2.78
837 1017 3.011119 GAGAAGAGCTCGTTGGAGTAGA 58.989 50.000 8.37 0.00 42.53 2.59
887 1072 2.415893 GGAGTTTTGATGTGGCGATTGG 60.416 50.000 0.00 0.00 0.00 3.16
955 1147 1.030457 AGTCTCGACGGAACAGTTGT 58.970 50.000 0.00 0.00 36.20 3.32
962 1165 2.163815 GGATCTTGAAGTCTCGACGGAA 59.836 50.000 0.00 0.00 36.20 4.30
966 1170 4.499183 ACAATGGATCTTGAAGTCTCGAC 58.501 43.478 1.96 0.00 0.00 4.20
1563 1772 1.522569 GGAAGCGGTGATAGTGCCT 59.477 57.895 0.00 0.00 0.00 4.75
1805 2015 0.178992 TTCAGCAAGGACACCAAGGG 60.179 55.000 0.00 0.00 0.00 3.95
1999 2209 2.555325 TGTCTTGCTTTGGCTTCATCAG 59.445 45.455 0.00 0.00 39.59 2.90
2085 2295 1.149964 TCTCGCGCTCGATCGACTTA 61.150 55.000 15.15 0.00 44.56 2.24
2193 2403 0.539438 GCCTGGTGTTGTCCATGGAA 60.539 55.000 18.20 4.13 36.84 3.53
2208 2418 2.125673 GCAGCAATGGCAAGCCTG 60.126 61.111 12.96 4.31 44.61 4.85
2256 2466 4.325119 TGTAGAAGTCGTTCACTAGCTCT 58.675 43.478 0.00 0.00 32.30 4.09
2301 2511 4.966787 GGGTTGCGGCCACCAGAA 62.967 66.667 22.93 0.00 0.00 3.02
2454 2664 4.271291 GCAGTCTTTCGGGATGAGATTAAC 59.729 45.833 0.00 0.00 0.00 2.01
2469 2679 1.078143 GATGGCCTCGGCAGTCTTT 60.078 57.895 10.51 0.00 42.43 2.52
2580 2790 4.555511 GCCACTCTTGTGACACAATTCTTC 60.556 45.833 20.86 6.24 46.55 2.87
2605 2815 4.002982 TCATTTGTGATCAAGGTCTTCCG 58.997 43.478 0.00 0.00 39.05 4.30
2614 2824 3.573538 CCACCCTTGTCATTTGTGATCAA 59.426 43.478 0.00 0.00 0.00 2.57
2652 2862 2.550180 GAGCAGGTCCTTCTCACAAAAC 59.450 50.000 13.14 0.00 0.00 2.43
2703 2913 2.171725 GCAAGGGTCGTCCGCATAC 61.172 63.158 0.00 0.00 41.52 2.39
2706 2916 4.680237 CTGCAAGGGTCGTCCGCA 62.680 66.667 0.00 0.60 41.52 5.69
2757 2967 2.899838 GCGTGCTCCACCAACACA 60.900 61.111 0.00 0.00 33.89 3.72
2967 3177 2.527624 ACTGTGCCCAGCTCCTCA 60.528 61.111 0.00 0.00 42.81 3.86
3088 3298 1.529309 GCTCCCCATTCCACTCCTC 59.471 63.158 0.00 0.00 0.00 3.71
3102 3312 4.201122 CAGATGGGCAGGGGCTCC 62.201 72.222 0.00 0.00 40.96 4.70
3114 3324 6.522946 TCTTCATCTCCTTGATTAGCAGATG 58.477 40.000 0.28 0.28 41.22 2.90
3313 3559 7.704578 AGTACTTGATAAAGCAGTAGACTGA 57.295 36.000 13.87 0.00 46.59 3.41
3326 3572 6.152323 AGCGTTACAGAGGAAGTACTTGATAA 59.848 38.462 14.14 0.00 0.00 1.75
3333 3579 4.437772 AAGAGCGTTACAGAGGAAGTAC 57.562 45.455 0.00 0.00 0.00 2.73
3334 3580 8.461249 AATATAAGAGCGTTACAGAGGAAGTA 57.539 34.615 0.00 0.00 0.00 2.24
3336 3582 7.382759 GGAAATATAAGAGCGTTACAGAGGAAG 59.617 40.741 0.00 0.00 0.00 3.46
3338 3584 6.550108 AGGAAATATAAGAGCGTTACAGAGGA 59.450 38.462 0.00 0.00 0.00 3.71
3339 3585 6.750148 AGGAAATATAAGAGCGTTACAGAGG 58.250 40.000 0.00 0.00 0.00 3.69
3340 3586 9.182933 GTAAGGAAATATAAGAGCGTTACAGAG 57.817 37.037 0.00 0.00 32.90 3.35
3341 3587 7.859377 CGTAAGGAAATATAAGAGCGTTACAGA 59.141 37.037 0.00 0.00 32.45 3.41
3342 3588 7.859377 TCGTAAGGAAATATAAGAGCGTTACAG 59.141 37.037 0.00 0.00 32.45 2.74
3343 3589 7.706159 TCGTAAGGAAATATAAGAGCGTTACA 58.294 34.615 0.00 0.00 32.45 2.41
3344 3590 8.566008 TTCGTAAGGAAATATAAGAGCGTTAC 57.434 34.615 0.00 0.00 38.47 2.50
3345 3591 8.792831 CTTCGTAAGGAAATATAAGAGCGTTA 57.207 34.615 0.00 0.00 33.34 3.18
3346 3592 7.695869 CTTCGTAAGGAAATATAAGAGCGTT 57.304 36.000 0.00 0.00 33.34 4.84
3362 3608 3.928727 TGTGTGTACTCCCTTCGTAAG 57.071 47.619 0.00 0.00 0.00 2.34
3363 3609 4.562082 CAATGTGTGTACTCCCTTCGTAA 58.438 43.478 0.00 0.00 0.00 3.18
3364 3610 3.615592 GCAATGTGTGTACTCCCTTCGTA 60.616 47.826 0.00 0.00 0.00 3.43
3365 3611 2.870435 GCAATGTGTGTACTCCCTTCGT 60.870 50.000 0.00 0.00 0.00 3.85
3366 3612 1.732259 GCAATGTGTGTACTCCCTTCG 59.268 52.381 0.00 0.00 0.00 3.79
3367 3613 2.744202 CAGCAATGTGTGTACTCCCTTC 59.256 50.000 0.00 0.00 0.00 3.46
3368 3614 2.106511 ACAGCAATGTGTGTACTCCCTT 59.893 45.455 0.00 0.00 0.00 3.95
3369 3615 1.699634 ACAGCAATGTGTGTACTCCCT 59.300 47.619 0.00 0.00 0.00 4.20
3370 3616 2.185004 ACAGCAATGTGTGTACTCCC 57.815 50.000 0.00 0.00 0.00 4.30
3371 3617 3.000727 GGTACAGCAATGTGTGTACTCC 58.999 50.000 19.86 7.79 45.59 3.85
3372 3618 3.659786 TGGTACAGCAATGTGTGTACTC 58.340 45.455 19.86 13.75 45.59 2.59
3373 3619 3.762407 TGGTACAGCAATGTGTGTACT 57.238 42.857 19.86 0.00 45.59 2.73
3407 3653 4.574892 TCTAATTGTTCGATGACCTGCAA 58.425 39.130 0.00 0.00 0.00 4.08
3409 3655 5.741388 AATCTAATTGTTCGATGACCTGC 57.259 39.130 0.00 0.00 0.00 4.85
3410 3656 8.593492 TGATAATCTAATTGTTCGATGACCTG 57.407 34.615 0.00 0.00 0.00 4.00
3431 3677 4.576053 GCTTGTGCCTGAACATGTATGATA 59.424 41.667 0.00 0.00 0.00 2.15
3585 3831 7.926018 ACTGGTTTGTTGTTTCAGGAATTAATC 59.074 33.333 0.00 0.00 0.00 1.75
3626 3872 0.984109 GAATTGTTCATGCAACGCGG 59.016 50.000 12.47 0.00 37.90 6.46
3636 3882 6.367421 CGATCGTTGTTTTAGGAATTGTTCA 58.633 36.000 7.03 0.00 0.00 3.18
3637 3883 5.283012 GCGATCGTTGTTTTAGGAATTGTTC 59.717 40.000 17.81 0.00 0.00 3.18
3737 3983 5.392165 CGGCCGTTGTTTCAGGAATTATTTA 60.392 40.000 19.50 0.00 0.00 1.40
3741 3987 1.807742 CGGCCGTTGTTTCAGGAATTA 59.192 47.619 19.50 0.00 0.00 1.40
3971 4289 0.325296 AAGCAGGTACGGATCTCCCA 60.325 55.000 0.00 0.00 34.14 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.