Multiple sequence alignment - TraesCS2B01G223600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G223600 chr2B 100.000 4841 0 0 1 4841 213256908 213252068 0.000000e+00 8940.0
1 TraesCS2B01G223600 chr2B 97.345 113 3 0 4422 4534 171459971 171460083 4.940000e-45 193.0
2 TraesCS2B01G223600 chr2B 97.059 34 0 1 62 94 194643804 194643837 6.770000e-04 56.5
3 TraesCS2B01G223600 chr2D 95.680 4444 125 23 1 4427 155737865 155733472 0.000000e+00 7081.0
4 TraesCS2B01G223600 chr2D 87.379 309 11 13 4531 4839 155733473 155733193 3.610000e-86 329.0
5 TraesCS2B01G223600 chr2D 91.045 134 10 2 4426 4559 161245378 161245509 3.850000e-41 180.0
6 TraesCS2B01G223600 chr2D 89.394 66 7 0 3983 4048 155733975 155733910 3.100000e-12 84.2
7 TraesCS2B01G223600 chr2A 94.018 4480 158 42 1 4427 165851736 165847314 0.000000e+00 6687.0
8 TraesCS2B01G223600 chr2A 90.850 306 10 9 4536 4841 165847310 165847023 1.260000e-105 394.0
9 TraesCS2B01G223600 chr6A 97.321 112 3 0 4425 4536 408886184 408886073 1.780000e-44 191.0
10 TraesCS2B01G223600 chr5B 95.763 118 5 0 4415 4532 697184924 697185041 1.780000e-44 191.0
11 TraesCS2B01G223600 chr5D 95.000 120 4 2 4424 4542 559427715 559427833 2.300000e-43 187.0
12 TraesCS2B01G223600 chr4A 94.215 121 7 0 4417 4537 647845695 647845575 8.270000e-43 185.0
13 TraesCS2B01G223600 chr7B 93.548 124 7 1 4426 4548 470986836 470986959 2.980000e-42 183.0
14 TraesCS2B01G223600 chr7B 97.059 34 0 1 62 94 693836370 693836403 6.770000e-04 56.5
15 TraesCS2B01G223600 chr3D 92.248 129 9 1 4426 4554 459358000 459358127 1.070000e-41 182.0
16 TraesCS2B01G223600 chr1D 92.248 129 9 1 4426 4554 335497206 335497333 1.070000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G223600 chr2B 213252068 213256908 4840 True 8940.000000 8940 100.000000 1 4841 1 chr2B.!!$R1 4840
1 TraesCS2B01G223600 chr2D 155733193 155737865 4672 True 2498.066667 7081 90.817667 1 4839 3 chr2D.!!$R1 4838
2 TraesCS2B01G223600 chr2A 165847023 165851736 4713 True 3540.500000 6687 92.434000 1 4841 2 chr2A.!!$R1 4840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 760 0.768221 TGGGGTAGCCTCATCATCCC 60.768 60.000 11.48 0.00 34.68 3.85 F
1753 1812 1.067364 TGCTTGTGATTTGCTGGTGTG 59.933 47.619 0.00 0.00 0.00 3.82 F
2631 2694 1.497278 CATTGACGAAGGTGCACCG 59.503 57.895 29.68 20.17 42.08 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2427 2490 0.539669 TCTCGGAAGCAGTGGTCAGA 60.540 55.0 0.00 0.00 0.00 3.27 R
3146 3209 0.036388 ACATCGGCAACCACGAGAAT 60.036 50.0 0.00 0.00 44.24 2.40 R
4120 4185 0.179034 GATAACCCCAGCCTCTGCAG 60.179 60.0 7.63 7.63 41.13 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.135094 AGGGCTTCATCATCATCGGT 58.865 50.000 0.00 0.00 0.00 4.69
88 90 4.322567 GAAGTCAAGAGTCAGATTTGCCT 58.677 43.478 0.00 0.00 0.00 4.75
130 132 7.068061 ACAAAACCCCAGTAAATTTACCACTA 58.932 34.615 21.92 0.00 34.19 2.74
200 202 4.772687 GCCGTCCCCTTTCCGGTC 62.773 72.222 0.00 0.00 43.56 4.79
201 203 3.315949 CCGTCCCCTTTCCGGTCA 61.316 66.667 0.00 0.00 37.00 4.02
202 204 2.047560 CGTCCCCTTTCCGGTCAC 60.048 66.667 0.00 0.00 0.00 3.67
206 208 1.192146 TCCCCTTTCCGGTCACAGAG 61.192 60.000 0.00 0.00 0.00 3.35
217 219 6.049955 TCCGGTCACAGAGAAGATAAAAAT 57.950 37.500 0.00 0.00 0.00 1.82
218 220 7.177832 TCCGGTCACAGAGAAGATAAAAATA 57.822 36.000 0.00 0.00 0.00 1.40
220 222 7.764443 TCCGGTCACAGAGAAGATAAAAATAAG 59.236 37.037 0.00 0.00 0.00 1.73
222 224 9.151471 CGGTCACAGAGAAGATAAAAATAAGAA 57.849 33.333 0.00 0.00 0.00 2.52
371 375 1.272212 GAAAATCGGGCTGCCTTTTCA 59.728 47.619 26.73 8.31 37.48 2.69
376 380 0.890683 CGGGCTGCCTTTTCAGAAAT 59.109 50.000 19.68 0.00 36.19 2.17
416 420 1.134946 GGCCTGCGCATTTTCTAATGT 59.865 47.619 12.24 0.00 42.56 2.71
438 442 7.781548 TGTGTTTACAGTTCCTTTTAGAGAC 57.218 36.000 0.00 0.00 31.91 3.36
477 489 4.607293 TGATCCCGGTCTGATTTATCTG 57.393 45.455 0.00 0.00 0.00 2.90
550 567 4.191544 CCGTGTCATGATGGAATTGTAGT 58.808 43.478 0.00 0.00 0.00 2.73
554 571 6.108687 GTGTCATGATGGAATTGTAGTCTCA 58.891 40.000 0.00 0.00 0.00 3.27
599 616 2.224077 AGGATCCTGTCACCCCTAGTA 58.776 52.381 15.29 0.00 0.00 1.82
633 652 5.460419 CCTTAGTAAATCTCATCTCGTGTGC 59.540 44.000 0.00 0.00 0.00 4.57
702 731 5.952347 ACTCCGATCTAAACTAAACCCAT 57.048 39.130 0.00 0.00 0.00 4.00
710 739 5.811190 TCTAAACTAAACCCATGCTTAGCA 58.189 37.500 10.09 10.09 44.86 3.49
731 760 0.768221 TGGGGTAGCCTCATCATCCC 60.768 60.000 11.48 0.00 34.68 3.85
778 808 3.831323 CTGCTTCCCATCTCTCTCTCTA 58.169 50.000 0.00 0.00 0.00 2.43
858 892 2.133201 TCCTCTCCTCCTCCCCCT 59.867 66.667 0.00 0.00 0.00 4.79
860 894 2.612251 CTCTCCTCCTCCCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
861 895 3.036959 TCTCCTCCTCCCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
862 896 4.179599 CTCCTCCTCCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
865 899 3.711782 CTCCTCCCCCTCCCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
1094 1136 2.350458 GGTACGGAAGGGTACGGCA 61.350 63.158 0.00 0.00 42.89 5.69
1118 1163 2.280416 CCCCCACCACCAACAACA 59.720 61.111 0.00 0.00 0.00 3.33
1262 1307 3.532155 GATCCGCCGTCCTCTGCT 61.532 66.667 0.00 0.00 0.00 4.24
1263 1308 3.492311 GATCCGCCGTCCTCTGCTC 62.492 68.421 0.00 0.00 0.00 4.26
1267 1312 4.863925 GCCGTCCTCTGCTCGCTC 62.864 72.222 0.00 0.00 0.00 5.03
1268 1313 4.544689 CCGTCCTCTGCTCGCTCG 62.545 72.222 0.00 0.00 0.00 5.03
1270 1315 3.821055 GTCCTCTGCTCGCTCGCT 61.821 66.667 0.00 0.00 0.00 4.93
1271 1316 3.513438 TCCTCTGCTCGCTCGCTC 61.513 66.667 0.00 0.00 0.00 5.03
1272 1317 4.903355 CCTCTGCTCGCTCGCTCG 62.903 72.222 0.00 0.00 0.00 5.03
1312 1357 2.806244 GCTTGCTGTCGGTTCTTTCTTA 59.194 45.455 0.00 0.00 0.00 2.10
1416 1461 1.224592 GATGGAGGTGGCGTGGAAT 59.775 57.895 0.00 0.00 0.00 3.01
1452 1497 3.329889 TTCCTGCAGTGCCCCGAT 61.330 61.111 13.72 0.00 0.00 4.18
1744 1803 6.040209 TGCCTAATTGATTGCTTGTGATTT 57.960 33.333 0.00 0.00 0.00 2.17
1747 1806 6.103997 CCTAATTGATTGCTTGTGATTTGCT 58.896 36.000 0.00 0.00 0.00 3.91
1748 1807 5.856126 AATTGATTGCTTGTGATTTGCTG 57.144 34.783 0.00 0.00 0.00 4.41
1749 1808 3.306917 TGATTGCTTGTGATTTGCTGG 57.693 42.857 0.00 0.00 0.00 4.85
1750 1809 2.629137 TGATTGCTTGTGATTTGCTGGT 59.371 40.909 0.00 0.00 0.00 4.00
1751 1810 2.512485 TTGCTTGTGATTTGCTGGTG 57.488 45.000 0.00 0.00 0.00 4.17
1752 1811 1.401761 TGCTTGTGATTTGCTGGTGT 58.598 45.000 0.00 0.00 0.00 4.16
1753 1812 1.067364 TGCTTGTGATTTGCTGGTGTG 59.933 47.619 0.00 0.00 0.00 3.82
1754 1813 1.603678 GCTTGTGATTTGCTGGTGTGG 60.604 52.381 0.00 0.00 0.00 4.17
1995 2054 1.890489 TCACTGCGTAGGTAAGCTTCA 59.110 47.619 0.00 0.00 0.00 3.02
2029 2088 5.823861 ACCTAGCATGGAAAAATGGTTTT 57.176 34.783 0.00 0.00 39.02 2.43
2030 2089 6.926630 ACCTAGCATGGAAAAATGGTTTTA 57.073 33.333 0.00 0.00 39.02 1.52
2031 2090 6.697395 ACCTAGCATGGAAAAATGGTTTTAC 58.303 36.000 0.00 0.00 39.02 2.01
2272 2335 5.642165 TCTCTGTAAGAAGTACCTCTTGGT 58.358 41.667 15.63 0.00 46.34 3.67
2418 2481 2.971330 TCCAATGGTGAGGCAATTTGTT 59.029 40.909 0.00 0.00 0.00 2.83
2427 2490 5.291971 GTGAGGCAATTTGTTGAGAAATGT 58.708 37.500 0.00 0.00 0.00 2.71
2574 2637 3.127425 CCCTACCTAAGGCATGCTTAC 57.873 52.381 18.92 0.18 45.03 2.34
2631 2694 1.497278 CATTGACGAAGGTGCACCG 59.503 57.895 29.68 20.17 42.08 4.94
2661 2724 4.521130 TGAAGATGACGACACTAAAGCT 57.479 40.909 0.00 0.00 0.00 3.74
2775 2838 7.406031 AATCTTCCTCAGACTACGAATTACA 57.594 36.000 0.00 0.00 32.83 2.41
2910 2973 3.001939 GGGTACGCAACATCTATTTTCCG 59.998 47.826 4.83 0.00 0.00 4.30
3165 3228 0.036388 ATTCTCGTGGTTGCCGATGT 60.036 50.000 0.00 0.00 33.27 3.06
3262 3325 0.182061 GGGCAGCTCTGATGATGGAA 59.818 55.000 0.29 0.00 0.00 3.53
3408 3471 3.357166 ACCGAGAATTATGAGAGCGAC 57.643 47.619 0.00 0.00 0.00 5.19
3423 3486 2.006062 CGACGCCGATCATCAGTCG 61.006 63.158 11.31 11.31 46.32 4.18
3471 3534 1.453155 AGATGGCCAAGTACAAAGCG 58.547 50.000 10.96 0.00 0.00 4.68
3673 3736 0.679002 AGCAAGCACCGATCAGCATT 60.679 50.000 4.84 0.00 0.00 3.56
3831 3894 0.532862 CTGTACCCCTAAGCGCCATG 60.533 60.000 2.29 0.00 0.00 3.66
3944 4009 0.677731 TGAGGCTGTAATGTGGCTGC 60.678 55.000 0.00 0.00 39.23 5.25
3955 4020 2.203337 TGGCTGCGGATTATGCCC 60.203 61.111 0.00 0.00 44.32 5.36
3995 4060 2.906389 TGCCTTGTGGTAGACTTGAGAT 59.094 45.455 0.00 0.00 35.27 2.75
4001 4066 6.073003 CCTTGTGGTAGACTTGAGATTGAAAC 60.073 42.308 0.00 0.00 0.00 2.78
4087 4152 2.393271 AGGCTGTTGAGTGTATGCTC 57.607 50.000 0.00 0.00 36.12 4.26
4100 4165 2.846206 TGTATGCTCCTTCCCTGATTGT 59.154 45.455 0.00 0.00 0.00 2.71
4141 4206 1.348775 GCAGAGGCTGGGGTTATCCT 61.349 60.000 0.00 0.00 36.96 3.24
4145 4210 1.847088 GAGGCTGGGGTTATCCTCTTT 59.153 52.381 0.00 0.00 41.35 2.52
4148 4213 2.656002 GCTGGGGTTATCCTCTTTTCC 58.344 52.381 0.00 0.00 34.72 3.13
4149 4214 2.025321 GCTGGGGTTATCCTCTTTTCCA 60.025 50.000 0.00 0.00 34.72 3.53
4150 4215 3.563479 GCTGGGGTTATCCTCTTTTCCAA 60.563 47.826 0.00 0.00 34.72 3.53
4151 4216 4.672899 CTGGGGTTATCCTCTTTTCCAAA 58.327 43.478 0.00 0.00 34.72 3.28
4152 4217 5.081315 TGGGGTTATCCTCTTTTCCAAAA 57.919 39.130 0.00 0.00 34.72 2.44
4242 4307 6.379133 TCATTGATATTGCCTTTGAAAGAGCT 59.621 34.615 6.49 0.00 0.00 4.09
4296 4363 6.069498 TGCCCATATCTTGATAATAGATGCCA 60.069 38.462 0.00 0.00 34.35 4.92
4427 4494 4.679905 GCCTAGTACCACATTGACACCTAC 60.680 50.000 0.00 0.00 0.00 3.18
4428 4495 4.710375 CCTAGTACCACATTGACACCTACT 59.290 45.833 0.00 0.00 0.00 2.57
4429 4496 4.803098 AGTACCACATTGACACCTACTC 57.197 45.455 0.00 0.00 0.00 2.59
4430 4497 3.514309 AGTACCACATTGACACCTACTCC 59.486 47.826 0.00 0.00 0.00 3.85
4431 4498 1.628846 ACCACATTGACACCTACTCCC 59.371 52.381 0.00 0.00 0.00 4.30
4432 4499 1.909302 CCACATTGACACCTACTCCCT 59.091 52.381 0.00 0.00 0.00 4.20
4433 4500 2.093447 CCACATTGACACCTACTCCCTC 60.093 54.545 0.00 0.00 0.00 4.30
4434 4501 2.093447 CACATTGACACCTACTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
4435 4502 1.137086 CATTGACACCTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
4436 4503 0.113776 TTGACACCTACTCCCTCCGT 59.886 55.000 0.00 0.00 0.00 4.69
4437 4504 0.113776 TGACACCTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
4438 4505 0.816373 GACACCTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
4439 4506 0.964358 ACACCTACTCCCTCCGTTCG 60.964 60.000 0.00 0.00 0.00 3.95
4440 4507 1.379576 ACCTACTCCCTCCGTTCGG 60.380 63.158 4.74 4.74 0.00 4.30
4441 4508 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
4442 4509 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
4443 4510 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
4444 4511 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4445 4512 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4446 4513 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4447 4514 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4448 4515 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4449 4516 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4450 4517 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4451 4518 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4452 4519 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4453 4520 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4454 4521 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
4455 4522 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
4456 4523 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
4457 4524 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
4458 4525 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
4459 4526 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
4460 4527 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
4461 4528 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
4462 4529 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
4463 4530 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
4464 4531 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
4465 4532 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
4466 4533 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
4467 4534 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
4468 4535 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
4469 4536 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
4470 4537 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
4471 4538 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
4472 4539 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
4473 4540 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
4474 4541 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
4475 4542 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
4476 4543 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
4477 4544 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
4478 4545 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
4479 4546 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
4507 4574 9.522804 AGTTCTAGATACATTCATTTTCGAGAC 57.477 33.333 0.00 0.00 0.00 3.36
4508 4575 9.302345 GTTCTAGATACATTCATTTTCGAGACA 57.698 33.333 0.00 0.00 0.00 3.41
4509 4576 9.869757 TTCTAGATACATTCATTTTCGAGACAA 57.130 29.630 0.00 0.00 0.00 3.18
4510 4577 9.521503 TCTAGATACATTCATTTTCGAGACAAG 57.478 33.333 0.00 0.00 0.00 3.16
4511 4578 9.307121 CTAGATACATTCATTTTCGAGACAAGT 57.693 33.333 0.00 0.00 0.00 3.16
4513 4580 9.653287 AGATACATTCATTTTCGAGACAAGTAA 57.347 29.630 0.00 0.00 0.00 2.24
4517 4584 8.237267 ACATTCATTTTCGAGACAAGTAATTCC 58.763 33.333 0.00 0.00 0.00 3.01
4518 4585 6.403333 TCATTTTCGAGACAAGTAATTCCG 57.597 37.500 0.00 0.00 0.00 4.30
4519 4586 6.160684 TCATTTTCGAGACAAGTAATTCCGA 58.839 36.000 0.00 0.00 0.00 4.55
4520 4587 6.647481 TCATTTTCGAGACAAGTAATTCCGAA 59.353 34.615 0.00 0.00 33.57 4.30
4521 4588 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
4522 4589 4.508461 TCGAGACAAGTAATTCCGAACA 57.492 40.909 0.00 0.00 0.00 3.18
4523 4590 4.482386 TCGAGACAAGTAATTCCGAACAG 58.518 43.478 0.00 0.00 0.00 3.16
4524 4591 4.216902 TCGAGACAAGTAATTCCGAACAGA 59.783 41.667 0.00 0.00 0.00 3.41
4525 4592 4.559251 CGAGACAAGTAATTCCGAACAGAG 59.441 45.833 0.00 0.00 0.00 3.35
4526 4593 4.822026 AGACAAGTAATTCCGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
4527 4594 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4528 4595 3.581332 ACAAGTAATTCCGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4529 4596 4.184629 CAAGTAATTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
4530 4597 3.442076 AGTAATTCCGAACAGAGGGAGT 58.558 45.455 0.00 0.00 33.01 3.85
4531 4598 4.607239 AGTAATTCCGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 33.01 2.59
4532 4599 5.209659 AGTAATTCCGAACAGAGGGAGTAT 58.790 41.667 0.00 0.00 33.01 2.12
4533 4600 6.371278 AGTAATTCCGAACAGAGGGAGTATA 58.629 40.000 0.00 0.00 33.01 1.47
4538 4605 7.664552 TTCCGAACAGAGGGAGTATAAAATA 57.335 36.000 0.00 0.00 33.01 1.40
4550 4617 7.237055 AGGGAGTATAAAATAGATACCCCACAC 59.763 40.741 15.67 0.00 39.90 3.82
4564 4631 1.679977 CACACCCCATCTTGCCCTG 60.680 63.158 0.00 0.00 0.00 4.45
4630 4697 2.475466 GCCGACATGGTGCCTGATG 61.475 63.158 0.00 0.00 41.21 3.07
4637 4704 1.133884 CATGGTGCCTGATGATCCAGT 60.134 52.381 0.00 0.00 32.43 4.00
4639 4706 1.340308 TGGTGCCTGATGATCCAGTTG 60.340 52.381 0.00 0.00 32.43 3.16
4640 4707 0.737219 GTGCCTGATGATCCAGTTGC 59.263 55.000 0.00 0.00 32.43 4.17
4641 4708 0.394762 TGCCTGATGATCCAGTTGCC 60.395 55.000 0.00 0.00 32.43 4.52
4642 4709 0.394762 GCCTGATGATCCAGTTGCCA 60.395 55.000 0.00 0.00 32.43 4.92
4643 4710 1.676746 CCTGATGATCCAGTTGCCAG 58.323 55.000 0.00 0.00 32.43 4.85
4644 4711 1.211212 CCTGATGATCCAGTTGCCAGA 59.789 52.381 0.00 0.00 32.43 3.86
4645 4712 2.158652 CCTGATGATCCAGTTGCCAGAT 60.159 50.000 0.00 0.00 32.43 2.90
4646 4713 2.879026 CTGATGATCCAGTTGCCAGATG 59.121 50.000 0.00 0.00 0.00 2.90
4647 4714 1.607628 GATGATCCAGTTGCCAGATGC 59.392 52.381 0.00 0.00 41.77 3.91
4648 4715 0.394762 TGATCCAGTTGCCAGATGCC 60.395 55.000 0.00 0.00 40.16 4.40
4649 4716 0.394762 GATCCAGTTGCCAGATGCCA 60.395 55.000 0.00 0.00 40.16 4.92
4650 4717 0.395311 ATCCAGTTGCCAGATGCCAG 60.395 55.000 0.00 0.00 40.16 4.85
4651 4718 2.707849 CCAGTTGCCAGATGCCAGC 61.708 63.158 0.00 0.00 40.16 4.85
4652 4719 1.677966 CAGTTGCCAGATGCCAGCT 60.678 57.895 0.00 0.00 40.16 4.24
4653 4720 1.378250 AGTTGCCAGATGCCAGCTC 60.378 57.895 0.00 0.00 40.16 4.09
4654 4721 2.437180 TTGCCAGATGCCAGCTCG 60.437 61.111 0.00 0.00 40.16 5.03
4655 4722 2.958281 TTGCCAGATGCCAGCTCGA 61.958 57.895 0.00 0.00 40.16 4.04
4656 4723 2.894387 GCCAGATGCCAGCTCGAC 60.894 66.667 0.00 0.00 0.00 4.20
4791 4858 0.036010 CTTTCATGTGGGCTCCGTCT 60.036 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.821711 CCCTTTGTTTGCCTGACCGA 60.822 55.000 0.00 0.00 0.00 4.69
19 20 1.836604 GGCCCCTTTGTTTGCCTGA 60.837 57.895 0.00 0.00 40.77 3.86
130 132 3.453424 GCAAACCGAACAAGAAAATGGT 58.547 40.909 0.00 0.00 0.00 3.55
217 219 2.707257 ACGGGGGTGTCTTTTCTTCTTA 59.293 45.455 0.00 0.00 0.00 2.10
218 220 1.493446 ACGGGGGTGTCTTTTCTTCTT 59.507 47.619 0.00 0.00 0.00 2.52
220 222 1.878088 GAACGGGGGTGTCTTTTCTTC 59.122 52.381 0.00 0.00 0.00 2.87
222 224 1.071857 GAGAACGGGGGTGTCTTTTCT 59.928 52.381 0.00 0.00 0.00 2.52
223 225 1.520494 GAGAACGGGGGTGTCTTTTC 58.480 55.000 0.00 0.00 0.00 2.29
228 230 1.885163 ATGTCGAGAACGGGGGTGTC 61.885 60.000 0.00 0.00 40.21 3.67
232 234 0.822164 AACTATGTCGAGAACGGGGG 59.178 55.000 0.00 0.00 40.21 5.40
264 267 6.261603 TCGCGGAAAAGTATAGATGTAGAAGA 59.738 38.462 6.13 0.00 0.00 2.87
266 269 6.381481 TCGCGGAAAAGTATAGATGTAGAA 57.619 37.500 6.13 0.00 0.00 2.10
416 420 6.808829 TCGTCTCTAAAAGGAACTGTAAACA 58.191 36.000 0.00 0.00 40.86 2.83
417 421 7.650903 TCTTCGTCTCTAAAAGGAACTGTAAAC 59.349 37.037 0.00 0.00 40.86 2.01
418 422 7.719483 TCTTCGTCTCTAAAAGGAACTGTAAA 58.281 34.615 0.00 0.00 40.86 2.01
421 425 5.279056 CCTCTTCGTCTCTAAAAGGAACTGT 60.279 44.000 0.00 0.00 40.86 3.55
438 442 3.376935 ATGGCGTGGCTCCTCTTCG 62.377 63.158 0.00 0.00 0.00 3.79
477 489 5.751243 ACTAATCCACAATTATTCGGTGC 57.249 39.130 0.00 0.00 0.00 5.01
550 567 1.592400 CGTTGGCTAGTCGGGTGAGA 61.592 60.000 0.00 0.00 0.00 3.27
554 571 1.874345 CTGTCGTTGGCTAGTCGGGT 61.874 60.000 0.00 0.00 0.00 5.28
599 616 5.586243 TGAGATTTACTAAGGCTACGTACGT 59.414 40.000 25.98 25.98 0.00 3.57
633 652 5.923665 AGATAAACTCGCTGTTTTTAACCG 58.076 37.500 10.64 0.00 45.69 4.44
702 731 0.106719 GGCTACCCCAATGCTAAGCA 60.107 55.000 0.00 0.00 44.86 3.91
710 739 1.707427 GGATGATGAGGCTACCCCAAT 59.293 52.381 0.00 0.00 35.39 3.16
778 808 0.609957 CATGGTGTGTGTGGGCAGAT 60.610 55.000 0.00 0.00 0.00 2.90
840 874 2.284151 GGGGGAGGAGGAGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
862 896 4.767892 AGGAGGGGCAGGGGAAGG 62.768 72.222 0.00 0.00 0.00 3.46
863 897 3.093172 GAGGAGGGGCAGGGGAAG 61.093 72.222 0.00 0.00 0.00 3.46
864 898 3.953652 TGAGGAGGGGCAGGGGAA 61.954 66.667 0.00 0.00 0.00 3.97
865 899 4.741239 GTGAGGAGGGGCAGGGGA 62.741 72.222 0.00 0.00 0.00 4.81
1118 1163 2.285743 GCAGGAGGAGGGGAGGTT 60.286 66.667 0.00 0.00 0.00 3.50
1416 1461 1.617322 AGTCGTACAGCTTCACCTGA 58.383 50.000 0.00 0.00 36.67 3.86
1452 1497 2.052690 GTAGAGGCGCTCCAGGTCA 61.053 63.158 7.64 0.00 33.74 4.02
1699 1757 6.144175 GCATACAGAAGAGAAGATACGGTAC 58.856 44.000 0.00 0.00 0.00 3.34
1700 1758 5.241064 GGCATACAGAAGAGAAGATACGGTA 59.759 44.000 0.00 0.00 0.00 4.02
1701 1759 4.038162 GGCATACAGAAGAGAAGATACGGT 59.962 45.833 0.00 0.00 0.00 4.83
1702 1760 4.279671 AGGCATACAGAAGAGAAGATACGG 59.720 45.833 0.00 0.00 0.00 4.02
1703 1761 5.446143 AGGCATACAGAAGAGAAGATACG 57.554 43.478 0.00 0.00 0.00 3.06
1744 1803 0.767998 TAATCACCACCACACCAGCA 59.232 50.000 0.00 0.00 0.00 4.41
1747 1806 1.440618 ACCTAATCACCACCACACCA 58.559 50.000 0.00 0.00 0.00 4.17
1748 1807 2.303600 TGTACCTAATCACCACCACACC 59.696 50.000 0.00 0.00 0.00 4.16
1749 1808 3.596214 CTGTACCTAATCACCACCACAC 58.404 50.000 0.00 0.00 0.00 3.82
1750 1809 2.569853 CCTGTACCTAATCACCACCACA 59.430 50.000 0.00 0.00 0.00 4.17
1751 1810 2.679930 GCCTGTACCTAATCACCACCAC 60.680 54.545 0.00 0.00 0.00 4.16
1752 1811 1.557832 GCCTGTACCTAATCACCACCA 59.442 52.381 0.00 0.00 0.00 4.17
1753 1812 1.557832 TGCCTGTACCTAATCACCACC 59.442 52.381 0.00 0.00 0.00 4.61
1754 1813 2.500098 TCTGCCTGTACCTAATCACCAC 59.500 50.000 0.00 0.00 0.00 4.16
2025 2084 5.874261 CCATCACCATTTGGGATTGTAAAAC 59.126 40.000 0.96 0.00 41.15 2.43
2029 2088 4.329638 ACCATCACCATTTGGGATTGTA 57.670 40.909 0.96 0.00 41.15 2.41
2030 2089 3.188880 ACCATCACCATTTGGGATTGT 57.811 42.857 0.96 1.28 41.15 2.71
2031 2090 3.770933 AGAACCATCACCATTTGGGATTG 59.229 43.478 0.96 0.73 41.15 2.67
2032 2091 3.770933 CAGAACCATCACCATTTGGGATT 59.229 43.478 0.96 0.00 41.15 3.01
2133 2196 1.899814 TCCACCAGCTCGTTGTATTCT 59.100 47.619 0.00 0.00 0.00 2.40
2272 2335 3.424703 AGCTGCAAATGGCTAAAGAGAA 58.575 40.909 1.02 0.00 45.15 2.87
2418 2481 2.369860 AGCAGTGGTCAGACATTTCTCA 59.630 45.455 2.17 0.00 0.00 3.27
2427 2490 0.539669 TCTCGGAAGCAGTGGTCAGA 60.540 55.000 0.00 0.00 0.00 3.27
2574 2637 2.826428 CTCATCACGGACCCATTACTG 58.174 52.381 0.00 0.00 0.00 2.74
2631 2694 2.662156 GTCGTCATCTTCAAACTCCGTC 59.338 50.000 0.00 0.00 0.00 4.79
2775 2838 3.541996 TGCGTGTTACCATCATCATCT 57.458 42.857 0.00 0.00 0.00 2.90
2874 2937 0.951558 GTACCCGGCCTGCAAATATG 59.048 55.000 0.00 0.00 0.00 1.78
2910 2973 3.553511 CAGTATCAGCCTCAACATCGAAC 59.446 47.826 0.00 0.00 0.00 3.95
3146 3209 0.036388 ACATCGGCAACCACGAGAAT 60.036 50.000 0.00 0.00 44.24 2.40
3408 3471 0.936764 CCTTCGACTGATGATCGGCG 60.937 60.000 0.00 0.00 40.05 6.46
3423 3486 2.706890 TGCTTTATGTCGAACCCCTTC 58.293 47.619 0.00 0.00 0.00 3.46
3471 3534 1.080569 CAGGTGTGCCATTTTCCGC 60.081 57.895 0.00 0.00 37.19 5.54
3588 3651 1.066908 ACACGGAAATTGTGGTGCTTG 59.933 47.619 0.00 0.00 41.64 4.01
3673 3736 2.371841 ACACTTGGTTACTCATGCCTGA 59.628 45.455 0.00 0.00 0.00 3.86
3831 3894 1.696832 GCGAAACATCTCAGGCGTCC 61.697 60.000 0.00 0.00 0.00 4.79
3917 3982 2.505407 ACATTACAGCCTCATGCCTACA 59.495 45.455 0.00 0.00 42.71 2.74
3955 4020 2.920490 GCAGAAGAGAGTTTACAGCTCG 59.080 50.000 0.00 0.00 37.99 5.03
3987 4052 2.549754 CAGCCACGTTTCAATCTCAAGT 59.450 45.455 0.00 0.00 0.00 3.16
3995 4060 1.169661 AATCCGCAGCCACGTTTCAA 61.170 50.000 0.00 0.00 0.00 2.69
4001 4066 2.633657 GCATAATCCGCAGCCACG 59.366 61.111 0.00 0.00 0.00 4.94
4087 4152 2.430465 CACACAGACAATCAGGGAAGG 58.570 52.381 0.00 0.00 0.00 3.46
4100 4165 1.908065 CATCATACGACGCACACAGA 58.092 50.000 0.00 0.00 0.00 3.41
4120 4185 0.179034 GATAACCCCAGCCTCTGCAG 60.179 60.000 7.63 7.63 41.13 4.41
4296 4363 8.190784 GCATAATTAACTAACAGCAAGGACATT 58.809 33.333 0.00 0.00 0.00 2.71
4427 4494 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4428 4495 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4429 4496 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4430 4497 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4431 4498 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4432 4499 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
4433 4500 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4434 4501 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
4435 4502 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
4436 4503 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
4437 4504 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
4438 4505 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
4439 4506 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
4440 4507 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
4441 4508 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
4442 4509 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
4443 4510 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
4444 4511 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
4445 4512 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
4446 4513 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
4447 4514 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
4448 4515 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
4449 4516 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
4450 4517 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
4451 4518 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
4452 4519 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
4453 4520 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
4481 4548 9.522804 GTCTCGAAAATGAATGTATCTAGAACT 57.477 33.333 0.00 0.00 0.00 3.01
4482 4549 9.302345 TGTCTCGAAAATGAATGTATCTAGAAC 57.698 33.333 0.00 0.00 0.00 3.01
4483 4550 9.869757 TTGTCTCGAAAATGAATGTATCTAGAA 57.130 29.630 0.00 0.00 0.00 2.10
4484 4551 9.521503 CTTGTCTCGAAAATGAATGTATCTAGA 57.478 33.333 0.00 0.00 0.00 2.43
4485 4552 9.307121 ACTTGTCTCGAAAATGAATGTATCTAG 57.693 33.333 0.00 0.00 0.00 2.43
4487 4554 9.653287 TTACTTGTCTCGAAAATGAATGTATCT 57.347 29.630 0.00 0.00 0.00 1.98
4491 4558 8.237267 GGAATTACTTGTCTCGAAAATGAATGT 58.763 33.333 0.00 0.00 0.00 2.71
4492 4559 7.426456 CGGAATTACTTGTCTCGAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
4493 4560 7.333423 TCGGAATTACTTGTCTCGAAAATGAAT 59.667 33.333 0.00 0.00 0.00 2.57
4494 4561 6.647481 TCGGAATTACTTGTCTCGAAAATGAA 59.353 34.615 0.00 0.00 0.00 2.57
4495 4562 6.160684 TCGGAATTACTTGTCTCGAAAATGA 58.839 36.000 0.00 0.00 0.00 2.57
4496 4563 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
4497 4564 6.425721 TGTTCGGAATTACTTGTCTCGAAAAT 59.574 34.615 0.00 0.00 37.00 1.82
4498 4565 5.754406 TGTTCGGAATTACTTGTCTCGAAAA 59.246 36.000 0.00 0.00 37.00 2.29
4499 4566 5.291178 TGTTCGGAATTACTTGTCTCGAAA 58.709 37.500 0.00 0.00 37.00 3.46
4500 4567 4.873817 TGTTCGGAATTACTTGTCTCGAA 58.126 39.130 0.00 0.00 33.66 3.71
4501 4568 4.216902 TCTGTTCGGAATTACTTGTCTCGA 59.783 41.667 0.00 0.00 0.00 4.04
4502 4569 4.482386 TCTGTTCGGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
4503 4570 4.865365 CCTCTGTTCGGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
4504 4571 4.322801 CCCTCTGTTCGGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
4505 4572 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4506 4573 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4507 4574 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4508 4575 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
4509 4576 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
4510 4577 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
4511 4578 7.664552 TTTATACTCCCTCTGTTCGGAATTA 57.335 36.000 0.00 0.00 0.00 1.40
4512 4579 6.555463 TTTATACTCCCTCTGTTCGGAATT 57.445 37.500 0.00 0.00 0.00 2.17
4513 4580 6.555463 TTTTATACTCCCTCTGTTCGGAAT 57.445 37.500 0.00 0.00 0.00 3.01
4514 4581 6.555463 ATTTTATACTCCCTCTGTTCGGAA 57.445 37.500 0.00 0.00 0.00 4.30
4515 4582 7.064866 TCTATTTTATACTCCCTCTGTTCGGA 58.935 38.462 0.00 0.00 0.00 4.55
4516 4583 7.286215 TCTATTTTATACTCCCTCTGTTCGG 57.714 40.000 0.00 0.00 0.00 4.30
4517 4584 9.843334 GTATCTATTTTATACTCCCTCTGTTCG 57.157 37.037 0.00 0.00 0.00 3.95
4519 4586 9.102453 GGGTATCTATTTTATACTCCCTCTGTT 57.898 37.037 0.00 0.00 31.71 3.16
4520 4587 7.679025 GGGGTATCTATTTTATACTCCCTCTGT 59.321 40.741 1.35 0.00 42.45 3.41
4521 4588 7.678598 TGGGGTATCTATTTTATACTCCCTCTG 59.321 40.741 9.16 0.00 46.09 3.35
4522 4589 7.679025 GTGGGGTATCTATTTTATACTCCCTCT 59.321 40.741 9.16 0.00 46.09 3.69
4523 4590 7.456902 TGTGGGGTATCTATTTTATACTCCCTC 59.543 40.741 9.16 10.36 46.09 4.30
4524 4591 7.237055 GTGTGGGGTATCTATTTTATACTCCCT 59.763 40.741 9.16 0.00 46.09 4.20
4525 4592 7.392418 GTGTGGGGTATCTATTTTATACTCCC 58.608 42.308 9.16 9.91 46.09 4.30
4526 4593 7.392418 GGTGTGGGGTATCTATTTTATACTCC 58.608 42.308 5.37 5.37 46.61 3.85
4527 4594 7.392418 GGGTGTGGGGTATCTATTTTATACTC 58.608 42.308 0.00 0.00 31.71 2.59
4528 4595 6.273965 GGGGTGTGGGGTATCTATTTTATACT 59.726 42.308 0.00 0.00 31.71 2.12
4529 4596 6.044637 TGGGGTGTGGGGTATCTATTTTATAC 59.955 42.308 0.00 0.00 0.00 1.47
4530 4597 6.158986 TGGGGTGTGGGGTATCTATTTTATA 58.841 40.000 0.00 0.00 0.00 0.98
4531 4598 4.985583 TGGGGTGTGGGGTATCTATTTTAT 59.014 41.667 0.00 0.00 0.00 1.40
4532 4599 4.381708 TGGGGTGTGGGGTATCTATTTTA 58.618 43.478 0.00 0.00 0.00 1.52
4533 4600 3.203059 TGGGGTGTGGGGTATCTATTTT 58.797 45.455 0.00 0.00 0.00 1.82
4538 4605 0.346932 AGATGGGGTGTGGGGTATCT 59.653 55.000 0.00 0.00 0.00 1.98
4544 4611 2.362889 GGCAAGATGGGGTGTGGG 60.363 66.667 0.00 0.00 0.00 4.61
4550 4617 1.683365 CAACCAGGGCAAGATGGGG 60.683 63.158 0.00 0.00 41.13 4.96
4564 4631 5.941948 ACACTGTTTATTCTACTGCAACC 57.058 39.130 0.00 0.00 0.00 3.77
4596 4663 1.003118 TCGGCACCTTTGATACAGCTT 59.997 47.619 0.00 0.00 0.00 3.74
4639 4706 2.894387 GTCGAGCTGGCATCTGGC 60.894 66.667 0.00 0.00 43.74 4.85
4640 4707 2.584418 CGTCGAGCTGGCATCTGG 60.584 66.667 0.00 0.00 0.00 3.86
4641 4708 2.584418 CCGTCGAGCTGGCATCTG 60.584 66.667 0.00 0.00 0.00 2.90
4642 4709 3.842923 CCCGTCGAGCTGGCATCT 61.843 66.667 0.00 0.00 0.00 2.90
4791 4858 7.394016 TCAAGACCATAAAATTGTCTAGCTCA 58.606 34.615 0.00 0.00 38.36 4.26
4795 4862 9.346725 GCTTTTCAAGACCATAAAATTGTCTAG 57.653 33.333 0.00 0.00 38.36 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.