Multiple sequence alignment - TraesCS2B01G223000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G223000 chr2B 100.000 9277 0 0 1 9277 212782335 212773059 0.000000e+00 17132.0
1 TraesCS2B01G223000 chr2B 83.684 950 123 13 4519 5454 21775488 21774557 0.000000e+00 867.0
2 TraesCS2B01G223000 chr2B 79.104 603 82 30 14 584 522542824 522542234 8.790000e-100 375.0
3 TraesCS2B01G223000 chr2B 85.448 268 34 4 5444 5707 494401723 494401989 3.300000e-69 274.0
4 TraesCS2B01G223000 chr2B 77.412 456 68 18 6979 7402 406877857 406878309 1.200000e-58 239.0
5 TraesCS2B01G223000 chr2B 75.000 620 86 38 7034 7586 405647787 405648404 1.210000e-53 222.0
6 TraesCS2B01G223000 chr2B 98.039 51 1 0 4022 4072 212778266 212778216 1.280000e-13 89.8
7 TraesCS2B01G223000 chr2B 98.039 51 1 0 4070 4120 212778314 212778264 1.280000e-13 89.8
8 TraesCS2B01G223000 chr2D 86.787 3050 215 78 6319 9277 155480587 155477635 0.000000e+00 3227.0
9 TraesCS2B01G223000 chr2D 93.775 1751 84 18 2328 4067 155484445 155482709 0.000000e+00 2606.0
10 TraesCS2B01G223000 chr2D 93.159 1725 77 22 586 2296 155486146 155484449 0.000000e+00 2494.0
11 TraesCS2B01G223000 chr2D 79.502 1966 255 75 5722 7586 364093258 364091340 0.000000e+00 1262.0
12 TraesCS2B01G223000 chr2D 88.513 827 47 19 4070 4864 155482754 155481944 0.000000e+00 957.0
13 TraesCS2B01G223000 chr2D 78.704 1296 165 57 6352 7575 417969134 417967878 0.000000e+00 761.0
14 TraesCS2B01G223000 chr2D 81.818 935 134 16 4531 5453 218752912 218752002 0.000000e+00 752.0
15 TraesCS2B01G223000 chr2D 80.000 610 76 22 14 587 591141182 591141781 8.670000e-110 409.0
16 TraesCS2B01G223000 chr2D 79.534 601 81 21 20 584 565132830 565132236 3.140000e-104 390.0
17 TraesCS2B01G223000 chr2D 77.071 676 78 42 6984 7586 341700010 341699339 1.500000e-82 318.0
18 TraesCS2B01G223000 chr2D 85.556 270 30 4 5444 5707 373676723 373676457 3.300000e-69 274.0
19 TraesCS2B01G223000 chr2D 85.075 268 35 4 5444 5707 422089548 422089814 1.540000e-67 268.0
20 TraesCS2B01G223000 chr2D 80.539 334 41 16 25 341 629570430 629570756 1.560000e-57 235.0
21 TraesCS2B01G223000 chr2D 86.550 171 19 3 179 345 103170146 103169976 1.590000e-42 185.0
22 TraesCS2B01G223000 chr2D 77.389 314 28 19 7314 7589 98988376 98988068 7.510000e-31 147.0
23 TraesCS2B01G223000 chr2A 92.499 1733 78 26 586 2296 144840914 144842616 0.000000e+00 2433.0
24 TraesCS2B01G223000 chr2A 93.421 1444 71 15 2632 4067 144843087 144844514 0.000000e+00 2119.0
25 TraesCS2B01G223000 chr2A 88.357 1503 92 34 7821 9277 144848572 144850037 0.000000e+00 1729.0
26 TraesCS2B01G223000 chr2A 79.847 1955 247 76 5733 7586 101856770 101854862 0.000000e+00 1291.0
27 TraesCS2B01G223000 chr2A 85.837 1045 81 36 6818 7819 144847484 144848504 0.000000e+00 1048.0
28 TraesCS2B01G223000 chr2A 88.862 826 50 14 4070 4864 144844469 144845283 0.000000e+00 977.0
29 TraesCS2B01G223000 chr2A 88.790 562 43 6 4970 5511 144845280 144845841 0.000000e+00 671.0
30 TraesCS2B01G223000 chr2A 77.832 618 87 33 5 592 502822530 502823127 4.150000e-88 337.0
31 TraesCS2B01G223000 chr2A 75.794 661 99 38 6979 7586 449270449 449271101 2.550000e-70 278.0
32 TraesCS2B01G223000 chr2A 84.871 271 33 3 5444 5707 531597902 531597633 5.520000e-67 267.0
33 TraesCS2B01G223000 chr3B 80.031 1958 240 79 5733 7586 342878484 342876574 0.000000e+00 1310.0
34 TraesCS2B01G223000 chr3B 79.477 1949 254 78 5733 7586 544790187 544788290 0.000000e+00 1249.0
35 TraesCS2B01G223000 chr3B 82.983 952 130 12 4517 5454 419560286 419559353 0.000000e+00 832.0
36 TraesCS2B01G223000 chr3B 88.753 489 42 5 1883 2359 754382913 754382426 3.730000e-163 586.0
37 TraesCS2B01G223000 chr3B 75.442 904 139 53 6752 7579 7348216 7349112 6.850000e-96 363.0
38 TraesCS2B01G223000 chr3B 75.763 590 75 28 12 584 798131682 798132220 1.560000e-57 235.0
39 TraesCS2B01G223000 chr3B 88.372 172 14 4 11 177 494400459 494400289 1.580000e-47 202.0
40 TraesCS2B01G223000 chr3B 84.868 152 19 4 7434 7585 135685599 135685746 5.800000e-32 150.0
41 TraesCS2B01G223000 chr6B 79.804 1941 255 68 5733 7586 638401895 638400005 0.000000e+00 1286.0
42 TraesCS2B01G223000 chr6B 79.079 1955 259 87 5730 7586 198397263 198395361 0.000000e+00 1206.0
43 TraesCS2B01G223000 chr6B 78.665 1903 248 86 5776 7584 487536697 487538535 0.000000e+00 1120.0
44 TraesCS2B01G223000 chr6B 83.403 952 126 12 4517 5454 273230160 273229227 0.000000e+00 854.0
45 TraesCS2B01G223000 chr6B 78.798 599 85 24 4 584 626881764 626882338 1.900000e-96 364.0
46 TraesCS2B01G223000 chr6B 78.769 471 68 16 6962 7402 486854224 486853756 4.240000e-73 287.0
47 TraesCS2B01G223000 chr5B 79.847 1955 240 81 5727 7577 217610951 217612855 0.000000e+00 1286.0
48 TraesCS2B01G223000 chr5B 84.361 908 103 20 4520 5417 316715780 316716658 0.000000e+00 854.0
49 TraesCS2B01G223000 chr5B 83.054 956 126 17 4512 5453 298694850 298695783 0.000000e+00 835.0
50 TraesCS2B01G223000 chr5B 80.465 1075 137 37 6576 7583 192865703 192866771 0.000000e+00 754.0
51 TraesCS2B01G223000 chr5B 82.953 745 96 12 4723 5454 290445682 290444956 2.180000e-180 643.0
52 TraesCS2B01G223000 chr5B 81.404 285 30 16 5 273 623115204 623114927 2.620000e-50 211.0
53 TraesCS2B01G223000 chr4B 79.693 1955 250 79 5733 7586 277406566 277404658 0.000000e+00 1275.0
54 TraesCS2B01G223000 chr4B 80.519 1427 181 50 5857 7254 179301501 179302859 0.000000e+00 1005.0
55 TraesCS2B01G223000 chr4B 83.789 950 122 13 4519 5454 295679092 295678161 0.000000e+00 872.0
56 TraesCS2B01G223000 chr4B 81.320 985 117 32 6270 7227 182773349 182772405 0.000000e+00 737.0
57 TraesCS2B01G223000 chr4B 79.013 1196 142 47 6395 7521 427507157 427508312 0.000000e+00 717.0
58 TraesCS2B01G223000 chr4B 83.622 751 90 24 6570 7292 377798218 377797473 0.000000e+00 675.0
59 TraesCS2B01G223000 chr4B 84.672 274 32 7 5444 5709 601535231 601535502 1.990000e-66 265.0
60 TraesCS2B01G223000 chr4B 77.346 309 28 28 7314 7586 447444234 447443932 2.700000e-30 145.0
61 TraesCS2B01G223000 chr4B 82.203 118 20 1 4519 4635 273682071 273681954 5.930000e-17 100.0
62 TraesCS2B01G223000 chr4B 100.000 38 0 0 4472 4509 324423648 324423685 4.650000e-08 71.3
63 TraesCS2B01G223000 chr4B 97.500 40 1 0 4471 4510 258766341 258766302 1.670000e-07 69.4
64 TraesCS2B01G223000 chr4B 97.500 40 1 0 4471 4510 668851183 668851144 1.670000e-07 69.4
65 TraesCS2B01G223000 chr1D 79.602 1961 253 79 5727 7586 493218789 493220703 0.000000e+00 1269.0
66 TraesCS2B01G223000 chr1D 83.895 950 121 13 4519 5454 452593657 452592726 0.000000e+00 878.0
67 TraesCS2B01G223000 chr1D 77.216 1049 156 48 6616 7586 50074493 50073450 3.810000e-148 536.0
68 TraesCS2B01G223000 chr1D 78.457 622 82 24 14 592 470919612 470919000 8.860000e-95 359.0
69 TraesCS2B01G223000 chr1D 78.275 603 83 29 14 584 472298351 472297765 2.480000e-90 344.0
70 TraesCS2B01G223000 chr1D 81.402 371 50 14 226 584 40172873 40172510 1.520000e-72 285.0
71 TraesCS2B01G223000 chr1D 81.232 357 45 10 1880 2232 7087520 7087858 1.540000e-67 268.0
72 TraesCS2B01G223000 chr1D 80.363 331 41 11 271 584 375637817 375637494 7.250000e-56 230.0
73 TraesCS2B01G223000 chr1D 80.000 345 35 17 11 341 473782706 473782382 3.370000e-54 224.0
74 TraesCS2B01G223000 chr1D 75.397 504 65 29 7140 7586 268962996 268963497 1.230000e-43 189.0
75 TraesCS2B01G223000 chr1D 85.380 171 19 5 179 345 436102330 436102498 1.240000e-38 172.0
76 TraesCS2B01G223000 chr1D 79.845 258 32 9 14 254 363617180 363616926 4.450000e-38 171.0
77 TraesCS2B01G223000 chr1D 84.239 184 20 7 4 180 404992231 404992412 4.450000e-38 171.0
78 TraesCS2B01G223000 chr1D 80.814 172 13 13 7434 7586 483954721 483954551 5.890000e-22 117.0
79 TraesCS2B01G223000 chr1D 94.737 38 2 0 4473 4510 416351899 416351862 1.010000e-04 60.2
80 TraesCS2B01G223000 chr3D 79.727 1904 245 71 5776 7586 126368165 126366310 0.000000e+00 1247.0
81 TraesCS2B01G223000 chr3D 79.296 1961 256 75 5733 7588 460638133 460636218 0.000000e+00 1234.0
82 TraesCS2B01G223000 chr3D 83.333 948 128 12 4519 5454 341505521 341506450 0.000000e+00 848.0
83 TraesCS2B01G223000 chr3D 82.809 954 127 15 4519 5454 145194929 145195863 0.000000e+00 819.0
84 TraesCS2B01G223000 chr3D 77.706 619 78 22 4 587 7069802 7069209 3.230000e-84 324.0
85 TraesCS2B01G223000 chr3D 82.635 334 49 3 1880 2205 275609841 275609509 4.240000e-73 287.0
86 TraesCS2B01G223000 chr3D 80.936 299 28 14 11 289 471393135 471393424 9.440000e-50 209.0
87 TraesCS2B01G223000 chr3D 88.000 175 16 5 4 177 447466473 447466643 1.580000e-47 202.0
88 TraesCS2B01G223000 chr3D 86.207 174 15 7 179 345 604408340 604408169 7.400000e-41 180.0
89 TraesCS2B01G223000 chr3D 85.714 175 16 7 179 345 433307500 433307327 9.570000e-40 176.0
90 TraesCS2B01G223000 chr3D 85.000 160 19 5 7427 7585 85447633 85447788 3.470000e-34 158.0
91 TraesCS2B01G223000 chr3D 86.184 152 12 3 7435 7586 290590153 290590295 1.250000e-33 156.0
92 TraesCS2B01G223000 chr3D 89.583 96 8 1 7435 7530 426867623 426867530 4.550000e-23 121.0
93 TraesCS2B01G223000 chr3D 74.540 326 39 28 7314 7600 440984062 440984382 1.650000e-17 102.0
94 TraesCS2B01G223000 chr1A 79.439 1960 250 80 5733 7586 491908620 491906708 0.000000e+00 1245.0
95 TraesCS2B01G223000 chr1A 77.471 1882 264 79 5775 7584 413794264 413792471 0.000000e+00 979.0
96 TraesCS2B01G223000 chr1A 83.422 935 122 14 4535 5454 112938003 112938919 0.000000e+00 837.0
97 TraesCS2B01G223000 chr1A 85.172 290 26 8 5444 5723 171462444 171462726 1.970000e-71 281.0
98 TraesCS2B01G223000 chr1A 75.281 534 104 16 6790 7299 474455423 474454894 7.250000e-56 230.0
99 TraesCS2B01G223000 chr1A 85.714 175 16 6 14 180 430240975 430240802 9.570000e-40 176.0
100 TraesCS2B01G223000 chr1A 91.860 86 5 1 7436 7521 520581053 520581136 1.640000e-22 119.0
101 TraesCS2B01G223000 chr1A 97.436 39 1 0 4471 4509 53027770 53027808 6.010000e-07 67.6
102 TraesCS2B01G223000 chr1A 92.500 40 3 0 4471 4510 413795294 413795255 3.620000e-04 58.4
103 TraesCS2B01G223000 chrUn 79.453 1903 253 67 5776 7586 70287699 70285843 0.000000e+00 1221.0
104 TraesCS2B01G223000 chrUn 78.856 1958 261 74 5733 7586 17584011 17582103 0.000000e+00 1181.0
105 TraesCS2B01G223000 chrUn 79.240 1657 214 62 6014 7586 1037307 1035697 0.000000e+00 1035.0
106 TraesCS2B01G223000 chrUn 83.194 958 129 11 4511 5454 86999687 87000626 0.000000e+00 848.0
107 TraesCS2B01G223000 chrUn 76.037 1423 190 80 6247 7586 49492634 49493988 4.790000e-167 599.0
108 TraesCS2B01G223000 chrUn 77.733 988 134 40 6593 7521 729594 730554 2.290000e-145 527.0
109 TraesCS2B01G223000 chrUn 77.633 997 137 40 6593 7530 229397373 229396404 2.290000e-145 527.0
110 TraesCS2B01G223000 chrUn 77.090 969 145 44 6690 7586 55883413 55884376 1.080000e-133 488.0
111 TraesCS2B01G223000 chrUn 79.160 619 81 22 4 587 28721656 28722261 1.460000e-102 385.0
112 TraesCS2B01G223000 chrUn 79.051 611 83 19 11 584 260712429 260713031 2.450000e-100 377.0
113 TraesCS2B01G223000 chrUn 78.261 598 83 29 17 584 33523726 33524306 3.210000e-89 340.0
114 TraesCS2B01G223000 chrUn 78.319 595 82 29 20 584 385451594 385451017 3.210000e-89 340.0
115 TraesCS2B01G223000 chrUn 78.151 595 84 28 20 584 33962518 33961940 4.150000e-88 337.0
116 TraesCS2B01G223000 chrUn 78.151 595 84 28 20 584 385390172 385389594 4.150000e-88 337.0
117 TraesCS2B01G223000 chrUn 78.094 598 85 28 17 584 387064639 387065220 4.150000e-88 337.0
118 TraesCS2B01G223000 chrUn 78.151 595 83 29 20 584 33835179 33834602 1.490000e-87 335.0
119 TraesCS2B01G223000 chrUn 78.013 614 77 25 14 584 92816293 92815695 5.370000e-87 333.0
120 TraesCS2B01G223000 chrUn 85.902 305 27 12 29 320 98200150 98199849 2.520000e-80 311.0
121 TraesCS2B01G223000 chrUn 77.375 579 81 22 36 588 102576509 102577063 1.960000e-76 298.0
122 TraesCS2B01G223000 chrUn 76.771 607 89 26 5 584 67072386 67071805 9.110000e-75 292.0
123 TraesCS2B01G223000 chrUn 75.602 623 83 37 11 596 86347997 86348587 2.590000e-60 244.0
124 TraesCS2B01G223000 chrUn 80.636 346 37 15 21 341 143922876 143923216 3.350000e-59 241.0
125 TraesCS2B01G223000 chrUn 86.471 170 13 7 179 341 260712393 260712559 2.660000e-40 178.0
126 TraesCS2B01G223000 chrUn 81.818 209 31 4 387 589 146356447 146356240 1.600000e-37 169.0
127 TraesCS2B01G223000 chrUn 84.971 173 14 4 11 177 86399621 86399455 2.070000e-36 165.0
128 TraesCS2B01G223000 chrUn 85.119 168 18 5 179 341 97635580 97635745 2.070000e-36 165.0
129 TraesCS2B01G223000 chrUn 84.571 175 17 8 179 345 201297542 201297714 2.070000e-36 165.0
130 TraesCS2B01G223000 chrUn 80.165 242 28 7 21 244 372830290 372830051 7.450000e-36 163.0
131 TraesCS2B01G223000 chrUn 84.615 169 18 7 179 341 362187195 362187361 2.680000e-35 161.0
132 TraesCS2B01G223000 chrUn 84.615 169 18 7 179 341 462852734 462852568 2.680000e-35 161.0
133 TraesCS2B01G223000 chrUn 83.815 173 19 6 179 345 171718455 171718624 1.250000e-33 156.0
134 TraesCS2B01G223000 chrUn 84.906 159 15 7 194 345 31235830 31235674 1.610000e-32 152.0
135 TraesCS2B01G223000 chrUn 83.125 160 17 7 11 161 35731912 35731754 4.520000e-28 137.0
136 TraesCS2B01G223000 chrUn 81.714 175 22 6 4 172 42508512 42508342 4.520000e-28 137.0
137 TraesCS2B01G223000 chrUn 83.125 160 17 7 11 161 242150399 242150557 4.520000e-28 137.0
138 TraesCS2B01G223000 chrUn 81.250 176 23 8 11 180 33441821 33441992 5.840000e-27 134.0
139 TraesCS2B01G223000 chrUn 81.250 176 23 8 11 180 33699578 33699749 5.840000e-27 134.0
140 TraesCS2B01G223000 chrUn 87.500 112 14 0 2266 2377 51474838 51474949 7.560000e-26 130.0
141 TraesCS2B01G223000 chrUn 87.500 112 14 0 2266 2377 339607050 339607161 7.560000e-26 130.0
142 TraesCS2B01G223000 chrUn 80.000 170 14 11 7436 7586 42332152 42331984 3.540000e-19 108.0
143 TraesCS2B01G223000 chrUn 96.923 65 1 1 7522 7586 235689605 235689542 3.540000e-19 108.0
144 TraesCS2B01G223000 chrUn 96.923 65 1 1 7522 7586 248749823 248749760 3.540000e-19 108.0
145 TraesCS2B01G223000 chrUn 95.385 65 2 1 7522 7586 11913474 11913537 1.650000e-17 102.0
146 TraesCS2B01G223000 chrUn 95.385 65 2 1 7522 7586 12159805 12159868 1.650000e-17 102.0
147 TraesCS2B01G223000 chr6A 79.176 1700 225 71 5971 7587 101298695 101300348 0.000000e+00 1059.0
148 TraesCS2B01G223000 chr6A 79.533 899 113 35 6311 7173 280610313 280609450 8.080000e-160 575.0
149 TraesCS2B01G223000 chr6A 80.000 260 34 14 13 261 2870203 2870455 9.570000e-40 176.0
150 TraesCS2B01G223000 chr6A 96.923 65 1 1 7522 7586 446760578 446760641 3.540000e-19 108.0
151 TraesCS2B01G223000 chr5D 78.148 1890 258 78 5730 7530 3516709 3514886 0.000000e+00 1059.0
152 TraesCS2B01G223000 chr5D 83.527 947 127 10 4519 5454 451680783 451679855 0.000000e+00 857.0
153 TraesCS2B01G223000 chr5D 79.833 1076 133 49 6576 7583 152753048 152754107 0.000000e+00 708.0
154 TraesCS2B01G223000 chr5D 78.818 897 132 36 6665 7518 403627901 403628782 1.360000e-152 551.0
155 TraesCS2B01G223000 chr5D 87.864 206 23 2 379 584 101481903 101481700 3.350000e-59 241.0
156 TraesCS2B01G223000 chr5D 86.705 173 18 5 11 180 495199127 495199297 4.420000e-43 187.0
157 TraesCS2B01G223000 chr5D 86.391 169 17 5 179 341 135525697 135525529 7.400000e-41 180.0
158 TraesCS2B01G223000 chr5D 85.549 173 18 6 179 345 519096592 519096763 3.440000e-39 174.0
159 TraesCS2B01G223000 chr5D 78.125 288 45 12 7028 7299 48409110 48409395 5.760000e-37 167.0
160 TraesCS2B01G223000 chr5D 78.855 227 26 14 7314 7521 125808087 125808310 5.840000e-27 134.0
161 TraesCS2B01G223000 chr5D 97.297 37 1 0 4471 4507 174309158 174309194 7.780000e-06 63.9
162 TraesCS2B01G223000 chr4D 79.920 1509 191 58 5781 7254 37040397 37038966 0.000000e+00 1005.0
163 TraesCS2B01G223000 chr4D 83.368 950 126 13 4519 5454 323565974 323565043 0.000000e+00 850.0
164 TraesCS2B01G223000 chr4D 81.275 1004 132 30 6577 7530 303078863 303077866 0.000000e+00 761.0
165 TraesCS2B01G223000 chr4D 77.850 1237 154 56 6431 7586 248931307 248930110 0.000000e+00 656.0
166 TraesCS2B01G223000 chr4D 81.011 890 111 32 5781 6651 211045472 211044622 0.000000e+00 654.0
167 TraesCS2B01G223000 chr4D 78.384 1027 141 45 6636 7586 47532140 47533161 8.020000e-165 592.0
168 TraesCS2B01G223000 chr4D 79.966 584 81 19 29 584 44834978 44835553 1.880000e-106 398.0
169 TraesCS2B01G223000 chr4D 76.485 842 122 40 6818 7587 224440270 224439433 1.130000e-103 388.0
170 TraesCS2B01G223000 chr4D 78.203 601 93 23 11 584 101675647 101676236 5.330000e-92 350.0
171 TraesCS2B01G223000 chr4D 82.294 401 45 14 6140 6535 230907616 230907995 3.230000e-84 324.0
172 TraesCS2B01G223000 chr4D 82.985 335 48 3 1879 2205 215198381 215198714 2.530000e-75 294.0
173 TraesCS2B01G223000 chr4D 82.635 334 49 3 1880 2205 228110994 228111326 4.240000e-73 287.0
174 TraesCS2B01G223000 chr4D 77.688 493 67 26 11 477 28898476 28898951 2.570000e-65 261.0
175 TraesCS2B01G223000 chr4D 79.540 391 54 16 212 591 501977347 501977722 1.200000e-63 255.0
176 TraesCS2B01G223000 chr4D 80.882 340 39 14 25 341 57897098 57896762 2.590000e-60 244.0
177 TraesCS2B01G223000 chr4D 76.923 455 74 16 6962 7387 5638842 5638390 7.250000e-56 230.0
178 TraesCS2B01G223000 chr4D 86.471 170 14 7 179 341 101675500 101675667 2.660000e-40 178.0
179 TraesCS2B01G223000 chr4D 85.882 170 19 4 180 345 48053177 48053009 9.570000e-40 176.0
180 TraesCS2B01G223000 chr4D 85.380 171 18 6 181 345 404224698 404224867 4.450000e-38 171.0
181 TraesCS2B01G223000 chr4D 85.057 174 17 7 178 345 38341922 38341752 1.600000e-37 169.0
182 TraesCS2B01G223000 chr4D 80.247 243 33 5 26 254 401776449 401776690 1.600000e-37 169.0
183 TraesCS2B01G223000 chr4D 84.302 172 19 7 178 341 441260243 441260414 2.680000e-35 161.0
184 TraesCS2B01G223000 chr4D 83.537 164 19 3 23 180 22579031 22578870 7.510000e-31 147.0
185 TraesCS2B01G223000 chr4D 79.736 227 22 14 7314 7521 70229397 70229618 9.710000e-30 143.0
186 TraesCS2B01G223000 chr4D 82.716 162 9 13 7434 7577 294454410 294454570 9.780000e-25 126.0
187 TraesCS2B01G223000 chr4D 81.548 168 11 13 7434 7582 163759982 163760148 4.550000e-23 121.0
188 TraesCS2B01G223000 chr4D 80.460 174 15 10 7432 7586 281188576 281188403 2.120000e-21 115.0
189 TraesCS2B01G223000 chr4D 75.241 311 37 23 7314 7586 51072985 51073293 2.740000e-20 111.0
190 TraesCS2B01G223000 chr4D 90.000 90 3 3 7434 7521 372529363 372529448 2.740000e-20 111.0
191 TraesCS2B01G223000 chr4D 96.923 65 1 1 7522 7586 10263601 10263538 3.540000e-19 108.0
192 TraesCS2B01G223000 chr4D 88.636 88 8 1 7432 7519 333269558 333269473 1.270000e-18 106.0
193 TraesCS2B01G223000 chr4D 94.203 69 3 1 7522 7590 220788289 220788222 4.580000e-18 104.0
194 TraesCS2B01G223000 chr4D 95.385 65 2 1 7522 7586 57872915 57872978 1.650000e-17 102.0
195 TraesCS2B01G223000 chr4D 97.500 40 1 0 4471 4510 37041449 37041410 1.670000e-07 69.4
196 TraesCS2B01G223000 chr4D 97.368 38 1 0 4472 4509 230906963 230907000 2.160000e-06 65.8
197 TraesCS2B01G223000 chr6D 83.157 944 125 15 4519 5448 314504087 314505010 0.000000e+00 832.0
198 TraesCS2B01G223000 chr6D 90.496 484 41 2 1880 2359 108721198 108720716 1.310000e-177 634.0
199 TraesCS2B01G223000 chr6D 80.032 616 81 23 5 584 414773784 414774393 1.440000e-112 418.0
200 TraesCS2B01G223000 chr6D 78.105 612 80 26 11 584 360692187 360692782 1.150000e-88 339.0
201 TraesCS2B01G223000 chr6D 78.136 590 72 27 11 582 369500456 369501006 1.160000e-83 322.0
202 TraesCS2B01G223000 chr6D 83.533 334 46 3 1880 2205 429334341 429334673 4.210000e-78 303.0
203 TraesCS2B01G223000 chr6D 76.634 612 73 26 14 584 333806863 333806281 3.300000e-69 274.0
204 TraesCS2B01G223000 chr6D 79.236 419 63 11 178 584 379977824 379977418 4.270000e-68 270.0
205 TraesCS2B01G223000 chr6D 81.197 351 41 9 14 341 428602801 428602453 9.240000e-65 259.0
206 TraesCS2B01G223000 chr6D 81.034 290 40 11 319 598 427121201 427121485 5.640000e-52 217.0
207 TraesCS2B01G223000 chr6D 86.047 172 18 4 179 345 428602840 428602670 7.400000e-41 180.0
208 TraesCS2B01G223000 chr6D 86.667 165 17 4 179 339 448625130 448624967 2.660000e-40 178.0
209 TraesCS2B01G223000 chr6D 86.145 166 15 6 179 339 315797129 315796967 1.240000e-38 172.0
210 TraesCS2B01G223000 chr6D 81.921 177 12 13 7434 7593 372827678 372827505 2.100000e-26 132.0
211 TraesCS2B01G223000 chr6D 75.884 311 35 25 7314 7586 267533121 267532813 1.270000e-23 122.0
212 TraesCS2B01G223000 chr6D 88.660 97 9 2 7434 7530 368753626 368753532 5.890000e-22 117.0
213 TraesCS2B01G223000 chr6D 81.034 174 9 7 7434 7586 408669587 408669417 5.890000e-22 117.0
214 TraesCS2B01G223000 chr6D 96.923 65 1 1 7522 7586 269703868 269703805 3.540000e-19 108.0
215 TraesCS2B01G223000 chr6D 94.203 69 2 2 7522 7589 48673997 48673930 4.580000e-18 104.0
216 TraesCS2B01G223000 chr5A 82.806 948 134 17 4519 5454 525484577 525483647 0.000000e+00 821.0
217 TraesCS2B01G223000 chr5A 84.067 659 84 13 6576 7221 237465586 237466236 4.760000e-172 616.0
218 TraesCS2B01G223000 chr5A 80.372 591 80 22 11 584 423550704 423551275 5.180000e-112 416.0
219 TraesCS2B01G223000 chr5A 78.616 477 71 15 131 584 14133246 14133714 4.240000e-73 287.0
220 TraesCS2B01G223000 chr5A 86.705 173 16 5 179 345 296306702 296306531 1.590000e-42 185.0
221 TraesCS2B01G223000 chr4A 82.777 958 128 17 4511 5453 210993084 210992149 0.000000e+00 821.0
222 TraesCS2B01G223000 chr4A 78.713 606 86 29 4 584 605061512 605062099 1.900000e-96 364.0
223 TraesCS2B01G223000 chr3A 78.006 973 129 50 6692 7586 375017291 375018256 4.930000e-147 532.0
224 TraesCS2B01G223000 chr3A 85.857 502 66 2 1880 2377 668416671 668416171 6.380000e-146 529.0
225 TraesCS2B01G223000 chr3A 86.842 152 11 3 7435 7586 383092969 383093111 2.680000e-35 161.0
226 TraesCS2B01G223000 chr3A 97.500 40 1 0 4471 4510 614177631 614177670 1.670000e-07 69.4
227 TraesCS2B01G223000 chr1B 78.516 903 123 36 6436 7299 566463140 566464010 2.290000e-145 527.0
228 TraesCS2B01G223000 chr1B 82.647 340 50 3 1881 2212 646468813 646468475 9.110000e-75 292.0
229 TraesCS2B01G223000 chr1B 85.662 272 27 4 5446 5710 250417570 250417304 9.180000e-70 276.0
230 TraesCS2B01G223000 chr1B 82.659 173 6 9 7434 7585 673972750 673972581 2.100000e-26 132.0
231 TraesCS2B01G223000 chr1B 97.500 40 1 0 4471 4510 308586010 308585971 1.670000e-07 69.4
232 TraesCS2B01G223000 chr7D 81.086 608 84 15 5 587 637148921 637149522 3.050000e-124 457.0
233 TraesCS2B01G223000 chr7D 82.222 495 55 11 6363 6854 194473388 194472924 6.750000e-106 396.0
234 TraesCS2B01G223000 chr7D 80.000 600 67 32 11 587 184583627 184584196 2.430000e-105 394.0
235 TraesCS2B01G223000 chr7D 76.913 758 104 42 6884 7581 426843096 426842350 1.900000e-96 364.0
236 TraesCS2B01G223000 chr7D 86.940 268 28 2 5444 5705 274697452 274697718 2.530000e-75 294.0
237 TraesCS2B01G223000 chr7D 82.934 334 48 3 1880 2205 7879791 7879459 9.110000e-75 292.0
238 TraesCS2B01G223000 chr7D 82.934 334 48 3 1880 2205 69472420 69472088 9.110000e-75 292.0
239 TraesCS2B01G223000 chr7D 83.203 256 37 5 332 584 25329025 25328773 7.250000e-56 230.0
240 TraesCS2B01G223000 chr7D 82.716 243 25 5 11 238 637149035 637149275 5.680000e-47 200.0
241 TraesCS2B01G223000 chr7D 80.252 238 31 9 16 238 42151910 42152146 2.070000e-36 165.0
242 TraesCS2B01G223000 chr7D 92.000 75 4 2 7522 7596 549534718 549534790 4.580000e-18 104.0
243 TraesCS2B01G223000 chr7D 100.000 40 0 0 4471 4510 390686977 390686938 3.590000e-09 75.0
244 TraesCS2B01G223000 chr7D 97.500 40 1 0 4471 4510 246811377 246811338 1.670000e-07 69.4
245 TraesCS2B01G223000 chr7D 97.500 40 1 0 4471 4510 428710973 428710934 1.670000e-07 69.4
246 TraesCS2B01G223000 chr7A 84.685 333 49 2 1880 2212 299503717 299504047 1.930000e-86 331.0
247 TraesCS2B01G223000 chr7A 86.567 268 30 1 5444 5705 307959913 307960180 3.280000e-74 291.0
248 TraesCS2B01G223000 chr7A 86.550 171 17 5 179 345 512443609 512443777 5.720000e-42 183.0
249 TraesCS2B01G223000 chr7A 85.806 155 18 2 7432 7586 292820776 292820926 2.680000e-35 161.0
250 TraesCS2B01G223000 chr7B 81.792 346 45 11 11 341 685481017 685480675 3.300000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G223000 chr2B 212773059 212782335 9276 True 17132.000000 17132 100.000000 1 9277 1 chr2B.!!$R2 9276
1 TraesCS2B01G223000 chr2B 21774557 21775488 931 True 867.000000 867 83.684000 4519 5454 1 chr2B.!!$R1 935
2 TraesCS2B01G223000 chr2B 522542234 522542824 590 True 375.000000 375 79.104000 14 584 1 chr2B.!!$R3 570
3 TraesCS2B01G223000 chr2B 405647787 405648404 617 False 222.000000 222 75.000000 7034 7586 1 chr2B.!!$F1 552
4 TraesCS2B01G223000 chr2D 155477635 155486146 8511 True 2321.000000 3227 90.558500 586 9277 4 chr2D.!!$R9 8691
5 TraesCS2B01G223000 chr2D 364091340 364093258 1918 True 1262.000000 1262 79.502000 5722 7586 1 chr2D.!!$R5 1864
6 TraesCS2B01G223000 chr2D 417967878 417969134 1256 True 761.000000 761 78.704000 6352 7575 1 chr2D.!!$R7 1223
7 TraesCS2B01G223000 chr2D 218752002 218752912 910 True 752.000000 752 81.818000 4531 5453 1 chr2D.!!$R3 922
8 TraesCS2B01G223000 chr2D 591141182 591141781 599 False 409.000000 409 80.000000 14 587 1 chr2D.!!$F2 573
9 TraesCS2B01G223000 chr2D 565132236 565132830 594 True 390.000000 390 79.534000 20 584 1 chr2D.!!$R8 564
10 TraesCS2B01G223000 chr2D 341699339 341700010 671 True 318.000000 318 77.071000 6984 7586 1 chr2D.!!$R4 602
11 TraesCS2B01G223000 chr2A 144840914 144850037 9123 False 1496.166667 2433 89.627667 586 9277 6 chr2A.!!$F3 8691
12 TraesCS2B01G223000 chr2A 101854862 101856770 1908 True 1291.000000 1291 79.847000 5733 7586 1 chr2A.!!$R1 1853
13 TraesCS2B01G223000 chr2A 502822530 502823127 597 False 337.000000 337 77.832000 5 592 1 chr2A.!!$F2 587
14 TraesCS2B01G223000 chr2A 449270449 449271101 652 False 278.000000 278 75.794000 6979 7586 1 chr2A.!!$F1 607
15 TraesCS2B01G223000 chr3B 342876574 342878484 1910 True 1310.000000 1310 80.031000 5733 7586 1 chr3B.!!$R1 1853
16 TraesCS2B01G223000 chr3B 544788290 544790187 1897 True 1249.000000 1249 79.477000 5733 7586 1 chr3B.!!$R4 1853
17 TraesCS2B01G223000 chr3B 419559353 419560286 933 True 832.000000 832 82.983000 4517 5454 1 chr3B.!!$R2 937
18 TraesCS2B01G223000 chr3B 7348216 7349112 896 False 363.000000 363 75.442000 6752 7579 1 chr3B.!!$F1 827
19 TraesCS2B01G223000 chr3B 798131682 798132220 538 False 235.000000 235 75.763000 12 584 1 chr3B.!!$F3 572
20 TraesCS2B01G223000 chr6B 638400005 638401895 1890 True 1286.000000 1286 79.804000 5733 7586 1 chr6B.!!$R4 1853
21 TraesCS2B01G223000 chr6B 198395361 198397263 1902 True 1206.000000 1206 79.079000 5730 7586 1 chr6B.!!$R1 1856
22 TraesCS2B01G223000 chr6B 487536697 487538535 1838 False 1120.000000 1120 78.665000 5776 7584 1 chr6B.!!$F1 1808
23 TraesCS2B01G223000 chr6B 273229227 273230160 933 True 854.000000 854 83.403000 4517 5454 1 chr6B.!!$R2 937
24 TraesCS2B01G223000 chr6B 626881764 626882338 574 False 364.000000 364 78.798000 4 584 1 chr6B.!!$F2 580
25 TraesCS2B01G223000 chr5B 217610951 217612855 1904 False 1286.000000 1286 79.847000 5727 7577 1 chr5B.!!$F2 1850
26 TraesCS2B01G223000 chr5B 316715780 316716658 878 False 854.000000 854 84.361000 4520 5417 1 chr5B.!!$F4 897
27 TraesCS2B01G223000 chr5B 298694850 298695783 933 False 835.000000 835 83.054000 4512 5453 1 chr5B.!!$F3 941
28 TraesCS2B01G223000 chr5B 192865703 192866771 1068 False 754.000000 754 80.465000 6576 7583 1 chr5B.!!$F1 1007
29 TraesCS2B01G223000 chr5B 290444956 290445682 726 True 643.000000 643 82.953000 4723 5454 1 chr5B.!!$R1 731
30 TraesCS2B01G223000 chr4B 277404658 277406566 1908 True 1275.000000 1275 79.693000 5733 7586 1 chr4B.!!$R4 1853
31 TraesCS2B01G223000 chr4B 179301501 179302859 1358 False 1005.000000 1005 80.519000 5857 7254 1 chr4B.!!$F1 1397
32 TraesCS2B01G223000 chr4B 295678161 295679092 931 True 872.000000 872 83.789000 4519 5454 1 chr4B.!!$R5 935
33 TraesCS2B01G223000 chr4B 182772405 182773349 944 True 737.000000 737 81.320000 6270 7227 1 chr4B.!!$R1 957
34 TraesCS2B01G223000 chr4B 427507157 427508312 1155 False 717.000000 717 79.013000 6395 7521 1 chr4B.!!$F3 1126
35 TraesCS2B01G223000 chr4B 377797473 377798218 745 True 675.000000 675 83.622000 6570 7292 1 chr4B.!!$R6 722
36 TraesCS2B01G223000 chr1D 493218789 493220703 1914 False 1269.000000 1269 79.602000 5727 7586 1 chr1D.!!$F5 1859
37 TraesCS2B01G223000 chr1D 452592726 452593657 931 True 878.000000 878 83.895000 4519 5454 1 chr1D.!!$R6 935
38 TraesCS2B01G223000 chr1D 50073450 50074493 1043 True 536.000000 536 77.216000 6616 7586 1 chr1D.!!$R2 970
39 TraesCS2B01G223000 chr1D 470919000 470919612 612 True 359.000000 359 78.457000 14 592 1 chr1D.!!$R7 578
40 TraesCS2B01G223000 chr1D 472297765 472298351 586 True 344.000000 344 78.275000 14 584 1 chr1D.!!$R8 570
41 TraesCS2B01G223000 chr3D 126366310 126368165 1855 True 1247.000000 1247 79.727000 5776 7586 1 chr3D.!!$R2 1810
42 TraesCS2B01G223000 chr3D 460636218 460638133 1915 True 1234.000000 1234 79.296000 5733 7588 1 chr3D.!!$R6 1855
43 TraesCS2B01G223000 chr3D 341505521 341506450 929 False 848.000000 848 83.333000 4519 5454 1 chr3D.!!$F4 935
44 TraesCS2B01G223000 chr3D 145194929 145195863 934 False 819.000000 819 82.809000 4519 5454 1 chr3D.!!$F2 935
45 TraesCS2B01G223000 chr3D 7069209 7069802 593 True 324.000000 324 77.706000 4 587 1 chr3D.!!$R1 583
46 TraesCS2B01G223000 chr1A 491906708 491908620 1912 True 1245.000000 1245 79.439000 5733 7586 1 chr1A.!!$R3 1853
47 TraesCS2B01G223000 chr1A 112938003 112938919 916 False 837.000000 837 83.422000 4535 5454 1 chr1A.!!$F2 919
48 TraesCS2B01G223000 chr1A 413792471 413795294 2823 True 518.700000 979 84.985500 4471 7584 2 chr1A.!!$R4 3113
49 TraesCS2B01G223000 chr1A 474454894 474455423 529 True 230.000000 230 75.281000 6790 7299 1 chr1A.!!$R2 509
50 TraesCS2B01G223000 chrUn 70285843 70287699 1856 True 1221.000000 1221 79.453000 5776 7586 1 chrUn.!!$R10 1810
51 TraesCS2B01G223000 chrUn 17582103 17584011 1908 True 1181.000000 1181 78.856000 5733 7586 1 chrUn.!!$R2 1853
52 TraesCS2B01G223000 chrUn 1035697 1037307 1610 True 1035.000000 1035 79.240000 6014 7586 1 chrUn.!!$R1 1572
53 TraesCS2B01G223000 chrUn 86999687 87000626 939 False 848.000000 848 83.194000 4511 5454 1 chrUn.!!$F12 943
54 TraesCS2B01G223000 chrUn 49492634 49493988 1354 False 599.000000 599 76.037000 6247 7586 1 chrUn.!!$F8 1339
55 TraesCS2B01G223000 chrUn 729594 730554 960 False 527.000000 527 77.733000 6593 7521 1 chrUn.!!$F1 928
56 TraesCS2B01G223000 chrUn 229396404 229397373 969 True 527.000000 527 77.633000 6593 7530 1 chrUn.!!$R15 937
57 TraesCS2B01G223000 chrUn 55883413 55884376 963 False 488.000000 488 77.090000 6690 7586 1 chrUn.!!$F10 896
58 TraesCS2B01G223000 chrUn 28721656 28722261 605 False 385.000000 385 79.160000 4 587 1 chrUn.!!$F4 583
59 TraesCS2B01G223000 chrUn 33523726 33524306 580 False 340.000000 340 78.261000 17 584 1 chrUn.!!$F6 567
60 TraesCS2B01G223000 chrUn 385451017 385451594 577 True 340.000000 340 78.319000 20 584 1 chrUn.!!$R20 564
61 TraesCS2B01G223000 chrUn 33961940 33962518 578 True 337.000000 337 78.151000 20 584 1 chrUn.!!$R5 564
62 TraesCS2B01G223000 chrUn 385389594 385390172 578 True 337.000000 337 78.151000 20 584 1 chrUn.!!$R19 564
63 TraesCS2B01G223000 chrUn 387064639 387065220 581 False 337.000000 337 78.094000 17 584 1 chrUn.!!$F21 567
64 TraesCS2B01G223000 chrUn 33834602 33835179 577 True 335.000000 335 78.151000 20 584 1 chrUn.!!$R4 564
65 TraesCS2B01G223000 chrUn 92815695 92816293 598 True 333.000000 333 78.013000 14 584 1 chrUn.!!$R12 570
66 TraesCS2B01G223000 chrUn 102576509 102577063 554 False 298.000000 298 77.375000 36 588 1 chrUn.!!$F14 552
67 TraesCS2B01G223000 chrUn 67071805 67072386 581 True 292.000000 292 76.771000 5 584 1 chrUn.!!$R9 579
68 TraesCS2B01G223000 chrUn 260712393 260713031 638 False 277.500000 377 82.761000 11 584 2 chrUn.!!$F22 573
69 TraesCS2B01G223000 chrUn 86347997 86348587 590 False 244.000000 244 75.602000 11 596 1 chrUn.!!$F11 585
70 TraesCS2B01G223000 chr6A 101298695 101300348 1653 False 1059.000000 1059 79.176000 5971 7587 1 chr6A.!!$F2 1616
71 TraesCS2B01G223000 chr6A 280609450 280610313 863 True 575.000000 575 79.533000 6311 7173 1 chr6A.!!$R1 862
72 TraesCS2B01G223000 chr5D 3514886 3516709 1823 True 1059.000000 1059 78.148000 5730 7530 1 chr5D.!!$R1 1800
73 TraesCS2B01G223000 chr5D 451679855 451680783 928 True 857.000000 857 83.527000 4519 5454 1 chr5D.!!$R4 935
74 TraesCS2B01G223000 chr5D 152753048 152754107 1059 False 708.000000 708 79.833000 6576 7583 1 chr5D.!!$F3 1007
75 TraesCS2B01G223000 chr5D 403627901 403628782 881 False 551.000000 551 78.818000 6665 7518 1 chr5D.!!$F5 853
76 TraesCS2B01G223000 chr4D 323565043 323565974 931 True 850.000000 850 83.368000 4519 5454 1 chr4D.!!$R13 935
77 TraesCS2B01G223000 chr4D 303077866 303078863 997 True 761.000000 761 81.275000 6577 7530 1 chr4D.!!$R12 953
78 TraesCS2B01G223000 chr4D 248930110 248931307 1197 True 656.000000 656 77.850000 6431 7586 1 chr4D.!!$R10 1155
79 TraesCS2B01G223000 chr4D 211044622 211045472 850 True 654.000000 654 81.011000 5781 6651 1 chr4D.!!$R7 870
80 TraesCS2B01G223000 chr4D 47532140 47533161 1021 False 592.000000 592 78.384000 6636 7586 1 chr4D.!!$F3 950
81 TraesCS2B01G223000 chr4D 37038966 37041449 2483 True 537.200000 1005 88.710000 4471 7254 2 chr4D.!!$R15 2783
82 TraesCS2B01G223000 chr4D 44834978 44835553 575 False 398.000000 398 79.966000 29 584 1 chr4D.!!$F2 555
83 TraesCS2B01G223000 chr4D 224439433 224440270 837 True 388.000000 388 76.485000 6818 7587 1 chr4D.!!$R9 769
84 TraesCS2B01G223000 chr4D 101675500 101676236 736 False 264.000000 350 82.337000 11 584 2 chr4D.!!$F16 573
85 TraesCS2B01G223000 chr6D 314504087 314505010 923 False 832.000000 832 83.157000 4519 5448 1 chr6D.!!$F1 929
86 TraesCS2B01G223000 chr6D 414773784 414774393 609 False 418.000000 418 80.032000 5 584 1 chr6D.!!$F4 579
87 TraesCS2B01G223000 chr6D 360692187 360692782 595 False 339.000000 339 78.105000 11 584 1 chr6D.!!$F2 573
88 TraesCS2B01G223000 chr6D 369500456 369501006 550 False 322.000000 322 78.136000 11 582 1 chr6D.!!$F3 571
89 TraesCS2B01G223000 chr6D 333806281 333806863 582 True 274.000000 274 76.634000 14 584 1 chr6D.!!$R6 570
90 TraesCS2B01G223000 chr5A 525483647 525484577 930 True 821.000000 821 82.806000 4519 5454 1 chr5A.!!$R2 935
91 TraesCS2B01G223000 chr5A 237465586 237466236 650 False 616.000000 616 84.067000 6576 7221 1 chr5A.!!$F2 645
92 TraesCS2B01G223000 chr5A 423550704 423551275 571 False 416.000000 416 80.372000 11 584 1 chr5A.!!$F3 573
93 TraesCS2B01G223000 chr4A 210992149 210993084 935 True 821.000000 821 82.777000 4511 5453 1 chr4A.!!$R1 942
94 TraesCS2B01G223000 chr4A 605061512 605062099 587 False 364.000000 364 78.713000 4 584 1 chr4A.!!$F1 580
95 TraesCS2B01G223000 chr3A 375017291 375018256 965 False 532.000000 532 78.006000 6692 7586 1 chr3A.!!$F1 894
96 TraesCS2B01G223000 chr3A 668416171 668416671 500 True 529.000000 529 85.857000 1880 2377 1 chr3A.!!$R1 497
97 TraesCS2B01G223000 chr1B 566463140 566464010 870 False 527.000000 527 78.516000 6436 7299 1 chr1B.!!$F1 863
98 TraesCS2B01G223000 chr7D 184583627 184584196 569 False 394.000000 394 80.000000 11 587 1 chr7D.!!$F2 576
99 TraesCS2B01G223000 chr7D 426842350 426843096 746 True 364.000000 364 76.913000 6884 7581 1 chr7D.!!$R7 697
100 TraesCS2B01G223000 chr7D 637148921 637149522 601 False 328.500000 457 81.901000 5 587 2 chr7D.!!$F5 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 238 1.016130 CGTGCCTCTCGTGAAAGCAT 61.016 55.0 13.08 0.0 35.11 3.79 F
121 269 1.092921 TCGCAGAAGCAAAACCGTGT 61.093 50.0 0.00 0.0 42.27 4.49 F
1590 1909 0.453390 GGAGCTTTGGGAAGATTGCG 59.547 55.0 0.00 0.0 34.71 4.85 F
2212 2554 0.035458 AGCAGCAACAGTCCAGGTAC 59.965 55.0 0.00 0.0 0.00 3.34 F
4000 4518 0.750850 GTAGCGGCTGTATTCTGGGA 59.249 55.0 13.86 0.0 0.00 4.37 F
4367 4901 0.525761 CACAAACCAATTCCGCCGAT 59.474 50.0 0.00 0.0 0.00 4.18 F
6151 7351 0.401738 ATGGGCCCTGATTGTATCCG 59.598 55.0 25.70 0.0 0.00 4.18 F
6554 7797 0.033503 TCCGTCTCCAGATGCACCTA 60.034 55.0 0.00 0.0 0.00 3.08 F
7499 8994 0.602905 GACGGGTGTGTGGAAGGAAG 60.603 60.0 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1909 0.600057 CTGCTTTTGGAACAGCCCTC 59.400 55.000 0.00 0.0 42.39 4.30 R
1641 1960 2.293399 CAGCAGCTTAACCCGAAACTTT 59.707 45.455 0.00 0.0 0.00 2.66 R
2506 2852 2.149578 GACTGATCAGCATACATGGGC 58.850 52.381 22.83 0.0 0.00 5.36 R
4106 4624 0.173481 GGCAGCATCTCTACACGTCA 59.827 55.000 0.00 0.0 0.00 4.35 R
5300 6131 0.034896 TTTGCGTCACCTCCTTCCTC 59.965 55.000 0.00 0.0 0.00 3.71 R
6241 7454 0.173481 CTGCCTCGATTCTTCGGTCA 59.827 55.000 0.00 0.0 45.53 4.02 R
7305 8746 0.451783 GATGTTGGACAATCGGTGCC 59.548 55.000 0.00 0.0 36.96 5.01 R
8234 9844 0.963856 CATGCTGGCACACTCCACAT 60.964 55.000 0.00 0.0 32.19 3.21 R
8894 10528 1.001815 ACGCGGTTTGGTCTGATTTTG 60.002 47.619 12.47 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 238 1.016130 CGTGCCTCTCGTGAAAGCAT 61.016 55.000 13.08 0.00 35.11 3.79
121 269 1.092921 TCGCAGAAGCAAAACCGTGT 61.093 50.000 0.00 0.00 42.27 4.49
188 375 1.959085 CACGGCCTGAAAGCACAAT 59.041 52.632 0.00 0.00 0.00 2.71
404 663 4.693042 TCCAAAAGTTAAGGAAGACCGA 57.307 40.909 0.00 0.00 41.83 4.69
584 901 1.725164 GCGCTCGTTAACTAGTTGCTT 59.275 47.619 18.56 0.00 0.00 3.91
622 939 9.896263 ATTAATTTGCAGTTTAAAAAGCATTGG 57.104 25.926 14.35 0.00 36.80 3.16
785 1103 2.562912 CACCACAGCAACCATCGC 59.437 61.111 0.00 0.00 0.00 4.58
823 1141 2.490217 CGACGAGATCCAACGGCT 59.510 61.111 8.36 0.00 35.21 5.52
824 1142 1.153823 CGACGAGATCCAACGGCTT 60.154 57.895 8.36 0.00 35.21 4.35
1425 1744 1.153901 CGCGTATGCCTATACCGGG 60.154 63.158 6.32 0.00 36.60 5.73
1521 1840 1.668101 GCCGGTCGATTGGACTCTCT 61.668 60.000 1.90 0.00 45.35 3.10
1590 1909 0.453390 GGAGCTTTGGGAAGATTGCG 59.547 55.000 0.00 0.00 34.71 4.85
1641 1960 2.668212 GCTAGTGGTGGTGCGCAA 60.668 61.111 14.00 0.00 0.00 4.85
1739 2078 8.744008 ACGATAAGATATCGGTATTGTTTCAG 57.256 34.615 20.12 0.00 44.98 3.02
1759 2098 9.438291 GTTTCAGTCCGAAATTATGATATTGTG 57.562 33.333 0.00 0.00 45.21 3.33
1761 2100 6.765512 TCAGTCCGAAATTATGATATTGTGCA 59.234 34.615 0.00 0.00 0.00 4.57
1776 2116 9.315525 TGATATTGTGCAATGGTTTTTATGATG 57.684 29.630 7.60 0.00 32.50 3.07
1777 2117 9.316730 GATATTGTGCAATGGTTTTTATGATGT 57.683 29.630 7.60 0.00 32.50 3.06
1778 2118 7.982761 ATTGTGCAATGGTTTTTATGATGTT 57.017 28.000 0.00 0.00 0.00 2.71
1779 2119 7.418840 TTGTGCAATGGTTTTTATGATGTTC 57.581 32.000 0.00 0.00 0.00 3.18
1780 2120 5.931146 TGTGCAATGGTTTTTATGATGTTCC 59.069 36.000 0.00 0.00 0.00 3.62
1781 2121 6.165577 GTGCAATGGTTTTTATGATGTTCCT 58.834 36.000 0.00 0.00 0.00 3.36
1782 2122 6.650390 GTGCAATGGTTTTTATGATGTTCCTT 59.350 34.615 0.00 0.00 0.00 3.36
1783 2123 6.873076 TGCAATGGTTTTTATGATGTTCCTTC 59.127 34.615 0.00 0.00 0.00 3.46
1784 2124 7.099120 GCAATGGTTTTTATGATGTTCCTTCT 58.901 34.615 0.00 0.00 0.00 2.85
1785 2125 7.603784 GCAATGGTTTTTATGATGTTCCTTCTT 59.396 33.333 0.00 0.00 0.00 2.52
1786 2126 9.143631 CAATGGTTTTTATGATGTTCCTTCTTC 57.856 33.333 0.00 0.00 0.00 2.87
1787 2127 7.831691 TGGTTTTTATGATGTTCCTTCTTCA 57.168 32.000 0.00 0.00 0.00 3.02
1788 2128 7.657336 TGGTTTTTATGATGTTCCTTCTTCAC 58.343 34.615 0.00 0.00 0.00 3.18
1789 2129 7.505585 TGGTTTTTATGATGTTCCTTCTTCACT 59.494 33.333 0.00 0.00 0.00 3.41
1812 2152 8.752254 CACTACATATATGTACTTGTTCCAACG 58.248 37.037 19.51 9.35 41.97 4.10
1823 2163 5.253330 ACTTGTTCCAACGTCCATATTGAT 58.747 37.500 0.00 0.00 0.00 2.57
1824 2164 5.123820 ACTTGTTCCAACGTCCATATTGATG 59.876 40.000 0.00 0.00 0.00 3.07
1848 2188 7.634718 TGGTAAGTGGGATTGTTATGATACAA 58.365 34.615 0.00 0.00 41.81 2.41
1983 2325 0.850100 ATGGGAGGTGTGTTGGACAA 59.150 50.000 0.00 0.00 35.91 3.18
2181 2523 9.535878 AACAGCTATACTTCTAATACTTTGCTC 57.464 33.333 0.00 0.00 0.00 4.26
2212 2554 0.035458 AGCAGCAACAGTCCAGGTAC 59.965 55.000 0.00 0.00 0.00 3.34
2239 2585 4.768968 CCACAATTCTCTTTTCACCATCCT 59.231 41.667 0.00 0.00 0.00 3.24
2254 2600 2.896685 CCATCCTTGAGTAGCCTCCTAG 59.103 54.545 0.00 0.00 36.86 3.02
2260 2606 4.703093 CCTTGAGTAGCCTCCTAGCTATAC 59.297 50.000 0.00 0.00 46.54 1.47
2437 2783 4.098914 TGCTTTGGTACTTCTGGTTCAT 57.901 40.909 0.00 0.00 0.00 2.57
2479 2825 8.611051 ACTCCATACTTGTAGAAATAAGGAGT 57.389 34.615 11.02 11.02 45.18 3.85
2531 2877 5.410746 CCCATGTATGCTGATCAGTCAATAC 59.589 44.000 23.38 23.79 33.05 1.89
2534 2880 7.874528 CCATGTATGCTGATCAGTCAATACTAA 59.125 37.037 27.25 17.85 33.48 2.24
2537 2883 9.914131 TGTATGCTGATCAGTCAATACTAATAC 57.086 33.333 27.25 20.17 33.48 1.89
2543 2889 9.995957 CTGATCAGTCAATACTAATACCGATAG 57.004 37.037 14.95 0.00 33.48 2.08
2671 3181 6.665992 ATTTCGCCTTCTATAGTATGACCA 57.334 37.500 0.00 0.00 0.00 4.02
2674 3184 5.571285 TCGCCTTCTATAGTATGACCAGAT 58.429 41.667 0.00 0.00 0.00 2.90
2678 3188 6.627065 GCCTTCTATAGTATGACCAGATGAGC 60.627 46.154 0.00 0.00 0.00 4.26
2779 3289 9.277783 GCTCCTATCTTGCTGATTCTATTTTAA 57.722 33.333 0.00 0.00 36.65 1.52
2862 3372 7.484993 TGGTTACTAGCTTGGAACTACATAA 57.515 36.000 20.44 0.70 0.00 1.90
2869 3379 6.743575 AGCTTGGAACTACATAATTGACAC 57.256 37.500 0.00 0.00 0.00 3.67
2870 3380 6.476378 AGCTTGGAACTACATAATTGACACT 58.524 36.000 0.00 0.00 0.00 3.55
2993 3503 4.583871 CAAGAGCCAAAGGAACAGTAGAT 58.416 43.478 0.00 0.00 0.00 1.98
2999 3509 3.560025 CCAAAGGAACAGTAGATGCTGGT 60.560 47.826 2.97 0.00 39.44 4.00
3116 3628 6.001449 AGCTGCTCAATACCCATTTACTTA 57.999 37.500 0.00 0.00 0.00 2.24
3130 3642 6.538742 CCCATTTACTTACATGGTAGTCACAG 59.461 42.308 5.38 0.00 38.72 3.66
3144 3656 4.552166 AGTCACAGGATTGTTTGAAACG 57.448 40.909 3.37 0.00 34.62 3.60
3150 3662 4.202101 ACAGGATTGTTTGAAACGCATCAA 60.202 37.500 16.95 0.00 37.53 2.57
3216 3732 5.550403 TCCATGACCCCTTAAACTCTTAACT 59.450 40.000 0.00 0.00 0.00 2.24
3304 3821 7.064609 TCTCGTATTCTTGATTAAAGGTTGCAG 59.935 37.037 0.00 0.00 36.46 4.41
3315 3832 9.727859 TGATTAAAGGTTGCAGTATACTTAACA 57.272 29.630 22.03 11.87 0.00 2.41
3319 3836 6.985188 AGGTTGCAGTATACTTAACATGTG 57.015 37.500 22.03 6.24 0.00 3.21
3320 3837 6.707290 AGGTTGCAGTATACTTAACATGTGA 58.293 36.000 22.03 0.00 0.00 3.58
3451 3968 5.739752 TGTTCAGCTATGCATGTTATCAC 57.260 39.130 10.16 0.25 0.00 3.06
3458 3975 4.818546 GCTATGCATGTTATCACCAGAACT 59.181 41.667 10.16 0.00 0.00 3.01
3644 4162 4.344102 TCTGCTACTGTGTGGACTTAGTTT 59.656 41.667 0.00 0.00 0.00 2.66
3647 4165 5.987347 TGCTACTGTGTGGACTTAGTTTAAC 59.013 40.000 0.00 0.00 0.00 2.01
3732 4250 7.041721 CCTTATTAAAAGAAAGGTGCCCAATC 58.958 38.462 0.00 0.00 35.95 2.67
3742 4260 1.471287 GGTGCCCAATCCGTACTTTTC 59.529 52.381 0.00 0.00 0.00 2.29
3745 4263 3.254903 GTGCCCAATCCGTACTTTTCTTT 59.745 43.478 0.00 0.00 0.00 2.52
3747 4265 3.756963 GCCCAATCCGTACTTTTCTTTCT 59.243 43.478 0.00 0.00 0.00 2.52
3748 4266 4.217767 GCCCAATCCGTACTTTTCTTTCTT 59.782 41.667 0.00 0.00 0.00 2.52
3749 4267 5.278808 GCCCAATCCGTACTTTTCTTTCTTT 60.279 40.000 0.00 0.00 0.00 2.52
3750 4268 6.737622 GCCCAATCCGTACTTTTCTTTCTTTT 60.738 38.462 0.00 0.00 0.00 2.27
3751 4269 7.207383 CCCAATCCGTACTTTTCTTTCTTTTT 58.793 34.615 0.00 0.00 0.00 1.94
3752 4270 7.381408 CCCAATCCGTACTTTTCTTTCTTTTTC 59.619 37.037 0.00 0.00 0.00 2.29
3753 4271 8.135529 CCAATCCGTACTTTTCTTTCTTTTTCT 58.864 33.333 0.00 0.00 0.00 2.52
3782 4300 5.506649 GCCAACTGGAAAAAGAATTACGTCA 60.507 40.000 0.00 0.00 37.39 4.35
3797 4315 5.721876 TTACGTCACCAAGTTTGTTACAG 57.278 39.130 0.00 0.00 0.00 2.74
3825 4343 1.686587 GCCTTTGTTGGGTTGCTTAGT 59.313 47.619 0.00 0.00 0.00 2.24
3828 4346 4.021456 GCCTTTGTTGGGTTGCTTAGTATT 60.021 41.667 0.00 0.00 0.00 1.89
3834 4352 5.222048 TGTTGGGTTGCTTAGTATTTCTCCT 60.222 40.000 0.00 0.00 0.00 3.69
3837 4355 7.023171 TGGGTTGCTTAGTATTTCTCCTTAA 57.977 36.000 0.00 0.00 0.00 1.85
3845 4363 7.041712 GCTTAGTATTTCTCCTTAAGCATGTCC 60.042 40.741 9.05 0.00 38.50 4.02
3853 4371 4.985538 TCCTTAAGCATGTCCTTGACTTT 58.014 39.130 0.00 0.00 33.15 2.66
3857 4375 2.157738 AGCATGTCCTTGACTTTGCTC 58.842 47.619 14.97 0.00 43.50 4.26
3869 4387 7.554835 TCCTTGACTTTGCTCTAGTTGTTTTTA 59.445 33.333 0.00 0.00 0.00 1.52
3876 4394 9.334693 CTTTGCTCTAGTTGTTTTTATCATCAC 57.665 33.333 0.00 0.00 0.00 3.06
3879 4397 7.877612 TGCTCTAGTTGTTTTTATCATCACTCA 59.122 33.333 0.00 0.00 0.00 3.41
3894 4412 8.976986 ATCATCACTCAATTTTGTTAAAGCTC 57.023 30.769 0.00 0.00 0.00 4.09
3939 4457 3.883489 GTGTTTTTCCTACTCAGTGGCTT 59.117 43.478 0.00 0.00 0.00 4.35
3995 4513 1.134788 ACCAGTGTAGCGGCTGTATTC 60.135 52.381 13.86 0.00 0.00 1.75
4000 4518 0.750850 GTAGCGGCTGTATTCTGGGA 59.249 55.000 13.86 0.00 0.00 4.37
4067 4585 6.015504 GTGTGAAAATATGCTTGACGTGTAG 58.984 40.000 0.00 0.00 0.00 2.74
4068 4586 5.929415 TGTGAAAATATGCTTGACGTGTAGA 59.071 36.000 0.00 0.00 0.00 2.59
4069 4587 6.593770 TGTGAAAATATGCTTGACGTGTAGAT 59.406 34.615 0.00 0.00 0.00 1.98
4070 4588 7.762159 TGTGAAAATATGCTTGACGTGTAGATA 59.238 33.333 0.00 0.00 0.00 1.98
4071 4589 8.765219 GTGAAAATATGCTTGACGTGTAGATAT 58.235 33.333 0.00 0.00 0.00 1.63
4072 4590 9.325198 TGAAAATATGCTTGACGTGTAGATATT 57.675 29.630 0.00 0.16 0.00 1.28
4073 4591 9.798885 GAAAATATGCTTGACGTGTAGATATTC 57.201 33.333 0.00 0.00 0.00 1.75
4074 4592 7.891183 AATATGCTTGACGTGTAGATATTCC 57.109 36.000 0.00 0.00 0.00 3.01
4075 4593 4.729227 TGCTTGACGTGTAGATATTCCA 57.271 40.909 0.00 0.00 0.00 3.53
4076 4594 4.682787 TGCTTGACGTGTAGATATTCCAG 58.317 43.478 0.00 0.00 0.00 3.86
4077 4595 3.491267 GCTTGACGTGTAGATATTCCAGC 59.509 47.826 0.00 0.00 0.00 4.85
4078 4596 4.737946 GCTTGACGTGTAGATATTCCAGCT 60.738 45.833 0.00 0.00 0.00 4.24
4079 4597 5.339008 TTGACGTGTAGATATTCCAGCTT 57.661 39.130 0.00 0.00 0.00 3.74
4080 4598 5.339008 TGACGTGTAGATATTCCAGCTTT 57.661 39.130 0.00 0.00 0.00 3.51
4081 4599 5.730550 TGACGTGTAGATATTCCAGCTTTT 58.269 37.500 0.00 0.00 0.00 2.27
4082 4600 5.580691 TGACGTGTAGATATTCCAGCTTTTG 59.419 40.000 0.00 0.00 0.00 2.44
4083 4601 5.730550 ACGTGTAGATATTCCAGCTTTTGA 58.269 37.500 0.00 0.00 0.00 2.69
4084 4602 6.349300 ACGTGTAGATATTCCAGCTTTTGAT 58.651 36.000 0.00 0.00 0.00 2.57
4085 4603 7.497595 ACGTGTAGATATTCCAGCTTTTGATA 58.502 34.615 0.00 0.00 0.00 2.15
4086 4604 7.653713 ACGTGTAGATATTCCAGCTTTTGATAG 59.346 37.037 0.00 0.00 0.00 2.08
4087 4605 7.653713 CGTGTAGATATTCCAGCTTTTGATAGT 59.346 37.037 0.00 0.00 0.00 2.12
4088 4606 9.331282 GTGTAGATATTCCAGCTTTTGATAGTT 57.669 33.333 0.00 0.00 0.00 2.24
4089 4607 9.330063 TGTAGATATTCCAGCTTTTGATAGTTG 57.670 33.333 0.00 0.00 0.00 3.16
4090 4608 9.331282 GTAGATATTCCAGCTTTTGATAGTTGT 57.669 33.333 0.00 0.00 0.00 3.32
4091 4609 8.218338 AGATATTCCAGCTTTTGATAGTTGTG 57.782 34.615 0.00 0.00 0.00 3.33
4092 4610 7.831193 AGATATTCCAGCTTTTGATAGTTGTGT 59.169 33.333 0.00 0.00 0.00 3.72
4093 4611 5.437289 TTCCAGCTTTTGATAGTTGTGTG 57.563 39.130 0.00 0.00 0.00 3.82
4094 4612 4.460263 TCCAGCTTTTGATAGTTGTGTGT 58.540 39.130 0.00 0.00 0.00 3.72
4095 4613 4.275689 TCCAGCTTTTGATAGTTGTGTGTG 59.724 41.667 0.00 0.00 0.00 3.82
4096 4614 4.275689 CCAGCTTTTGATAGTTGTGTGTGA 59.724 41.667 0.00 0.00 0.00 3.58
4097 4615 5.221028 CCAGCTTTTGATAGTTGTGTGTGAA 60.221 40.000 0.00 0.00 0.00 3.18
4098 4616 6.264832 CAGCTTTTGATAGTTGTGTGTGAAA 58.735 36.000 0.00 0.00 0.00 2.69
4099 4617 6.751425 CAGCTTTTGATAGTTGTGTGTGAAAA 59.249 34.615 0.00 0.00 0.00 2.29
4100 4618 7.436080 CAGCTTTTGATAGTTGTGTGTGAAAAT 59.564 33.333 0.00 0.00 0.00 1.82
4101 4619 8.629158 AGCTTTTGATAGTTGTGTGTGAAAATA 58.371 29.630 0.00 0.00 0.00 1.40
4102 4620 9.410556 GCTTTTGATAGTTGTGTGTGAAAATAT 57.589 29.630 0.00 0.00 0.00 1.28
4104 4622 8.741101 TTTGATAGTTGTGTGTGAAAATATGC 57.259 30.769 0.00 0.00 0.00 3.14
4105 4623 7.686438 TGATAGTTGTGTGTGAAAATATGCT 57.314 32.000 0.00 0.00 0.00 3.79
4106 4624 8.109705 TGATAGTTGTGTGTGAAAATATGCTT 57.890 30.769 0.00 0.00 0.00 3.91
4107 4625 8.022550 TGATAGTTGTGTGTGAAAATATGCTTG 58.977 33.333 0.00 0.00 0.00 4.01
4108 4626 6.389830 AGTTGTGTGTGAAAATATGCTTGA 57.610 33.333 0.00 0.00 0.00 3.02
4109 4627 6.208644 AGTTGTGTGTGAAAATATGCTTGAC 58.791 36.000 0.00 0.00 0.00 3.18
4110 4628 4.782156 TGTGTGTGAAAATATGCTTGACG 58.218 39.130 0.00 0.00 0.00 4.35
4111 4629 4.274705 TGTGTGTGAAAATATGCTTGACGT 59.725 37.500 0.00 0.00 0.00 4.34
4112 4630 4.612614 GTGTGTGAAAATATGCTTGACGTG 59.387 41.667 0.00 0.00 0.00 4.49
4113 4631 4.274705 TGTGTGAAAATATGCTTGACGTGT 59.725 37.500 0.00 0.00 0.00 4.49
4171 4692 1.898472 CAGGCAGAGGTTTCTCAGAGA 59.102 52.381 0.00 0.00 42.34 3.10
4367 4901 0.525761 CACAAACCAATTCCGCCGAT 59.474 50.000 0.00 0.00 0.00 4.18
4370 4904 2.162809 ACAAACCAATTCCGCCGATTAC 59.837 45.455 0.00 0.00 0.00 1.89
4408 4943 6.073327 ACTTACTTTTGTGCTAAAAGGAGC 57.927 37.500 22.09 0.00 40.54 4.70
4432 4967 4.120589 CCCTAGCCGTACTTTGATTTCTC 58.879 47.826 0.00 0.00 0.00 2.87
4434 4969 5.420409 CCTAGCCGTACTTTGATTTCTCTT 58.580 41.667 0.00 0.00 0.00 2.85
4441 4976 7.323895 GCCGTACTTTGATTTCTCTTCTTTTTC 59.676 37.037 0.00 0.00 0.00 2.29
4528 5106 4.417183 AGGGTATACATCAGTGAGGAGAGA 59.583 45.833 12.53 0.00 0.00 3.10
4548 5126 7.178274 GGAGAGATGTTGATATCCTATGTGTCT 59.822 40.741 0.00 0.00 0.00 3.41
4566 5144 5.163141 TGTGTCTAAGAAACCAAATGGAGGA 60.163 40.000 6.42 0.00 38.94 3.71
4576 5155 6.933514 AACCAAATGGAGGAACATAATGTT 57.066 33.333 6.42 0.00 40.14 2.71
4675 5255 1.853963 ACAAGAGCCTCGAGTATGGT 58.146 50.000 12.31 1.16 0.00 3.55
4709 5297 1.120530 GAGGCAAGGAGACCGGATTA 58.879 55.000 9.46 0.00 0.00 1.75
4710 5298 1.694696 GAGGCAAGGAGACCGGATTAT 59.305 52.381 9.46 0.00 0.00 1.28
4711 5299 1.694696 AGGCAAGGAGACCGGATTATC 59.305 52.381 9.46 0.00 0.00 1.75
4712 5300 1.270893 GGCAAGGAGACCGGATTATCC 60.271 57.143 9.46 9.75 0.00 2.59
4713 5301 1.694696 GCAAGGAGACCGGATTATCCT 59.305 52.381 9.46 12.10 44.12 3.24
4714 5302 2.548920 GCAAGGAGACCGGATTATCCTG 60.549 54.545 9.46 5.37 41.36 3.86
4715 5303 2.016905 AGGAGACCGGATTATCCTGG 57.983 55.000 9.46 16.56 40.69 4.45
4716 5304 1.220750 AGGAGACCGGATTATCCTGGT 59.779 52.381 21.41 21.41 42.93 4.00
4730 5318 0.951040 CCTGGTCAAGCTGGTCGTTC 60.951 60.000 0.00 0.00 0.00 3.95
4801 5390 3.274288 CAATAAGAGCACCAAGAGGGAC 58.726 50.000 0.00 0.00 41.15 4.46
4812 5401 1.981495 CAAGAGGGACTTCCAGGAACT 59.019 52.381 0.00 0.00 41.55 3.01
4813 5402 2.373502 CAAGAGGGACTTCCAGGAACTT 59.626 50.000 0.00 0.00 41.55 2.66
4828 5417 2.307686 GGAACTTTGGGAGGACATGGTA 59.692 50.000 0.00 0.00 0.00 3.25
4897 5490 2.642139 CGTGGGTACATCTAACACGT 57.358 50.000 7.28 0.00 46.78 4.49
4898 5491 2.256174 CGTGGGTACATCTAACACGTG 58.744 52.381 15.48 15.48 46.78 4.49
4899 5492 2.613691 GTGGGTACATCTAACACGTGG 58.386 52.381 21.57 1.74 0.00 4.94
4900 5493 1.551430 TGGGTACATCTAACACGTGGG 59.449 52.381 21.57 9.67 0.00 4.61
4901 5494 1.551883 GGGTACATCTAACACGTGGGT 59.448 52.381 21.57 9.93 0.00 4.51
4902 5495 2.760092 GGGTACATCTAACACGTGGGTA 59.240 50.000 21.57 10.60 0.00 3.69
4903 5496 3.429410 GGGTACATCTAACACGTGGGTAC 60.429 52.174 21.57 18.61 0.00 3.34
4904 5497 3.193267 GGTACATCTAACACGTGGGTACA 59.807 47.826 21.57 0.00 33.22 2.90
4905 5498 4.142093 GGTACATCTAACACGTGGGTACAT 60.142 45.833 21.57 2.12 33.22 2.29
4906 5499 4.119442 ACATCTAACACGTGGGTACATC 57.881 45.455 21.57 0.00 0.00 3.06
4907 5500 3.767673 ACATCTAACACGTGGGTACATCT 59.232 43.478 21.57 0.00 0.00 2.90
4908 5501 4.951715 ACATCTAACACGTGGGTACATCTA 59.048 41.667 21.57 0.00 0.00 1.98
4909 5502 5.419788 ACATCTAACACGTGGGTACATCTAA 59.580 40.000 21.57 0.00 0.00 2.10
4910 5503 5.314923 TCTAACACGTGGGTACATCTAAC 57.685 43.478 21.57 0.00 0.00 2.34
4911 5504 4.766373 TCTAACACGTGGGTACATCTAACA 59.234 41.667 21.57 0.00 0.00 2.41
4912 5505 3.308438 ACACGTGGGTACATCTAACAC 57.692 47.619 21.57 0.00 0.00 3.32
4913 5506 2.629137 ACACGTGGGTACATCTAACACA 59.371 45.455 21.57 0.00 32.58 3.72
4914 5507 3.259876 ACACGTGGGTACATCTAACACAT 59.740 43.478 21.57 0.00 31.79 3.21
4964 5557 2.750141 ATGGCAGCAGGAATCAAGAT 57.250 45.000 0.00 0.00 0.00 2.40
5005 5598 3.259064 TCGCTTTAGCCTACAACATGAC 58.741 45.455 0.00 0.00 37.91 3.06
5061 5655 3.444388 CCACCTAGTGACTTCCAGTAGTC 59.556 52.174 0.00 0.00 43.92 2.59
5078 5672 2.171840 AGTCGTCAACACTCTAGCCAT 58.828 47.619 0.00 0.00 0.00 4.40
5134 5731 3.678806 CGTGCTTGCCTAGATTGTAAGGA 60.679 47.826 0.00 0.00 34.58 3.36
5135 5732 3.623510 GTGCTTGCCTAGATTGTAAGGAC 59.376 47.826 4.83 4.83 34.58 3.85
5138 5735 4.274459 GCTTGCCTAGATTGTAAGGACATG 59.726 45.833 0.00 0.00 34.86 3.21
5167 5770 2.436417 TGTCCCTCAACATAAGCTTGC 58.564 47.619 9.86 0.00 0.00 4.01
5186 5789 2.035442 GGTGGCTGACTTCCGCTTC 61.035 63.158 0.00 0.00 34.64 3.86
5300 6131 1.511613 TATTGAGGAGGGCTCTTGGG 58.488 55.000 0.00 0.00 0.00 4.12
5314 6145 0.615850 CTTGGGAGGAAGGAGGTGAC 59.384 60.000 0.00 0.00 0.00 3.67
5428 6260 7.148457 GCTAAAGATACTTGGTAGTGGAACAAC 60.148 40.741 0.00 0.00 44.16 3.32
5461 6307 8.026607 CAGAAGGCGTTTATAGGAATTTTGAAA 58.973 33.333 0.00 0.00 0.00 2.69
5511 6357 5.376625 GGAAAAATTCCTTTGAAGCCCTTT 58.623 37.500 1.86 0.00 46.57 3.11
5512 6358 5.239306 GGAAAAATTCCTTTGAAGCCCTTTG 59.761 40.000 1.86 0.00 46.57 2.77
5513 6359 4.356405 AAATTCCTTTGAAGCCCTTTGG 57.644 40.909 0.00 0.00 33.05 3.28
5517 6653 3.111484 TCCTTTGAAGCCCTTTGGTTTT 58.889 40.909 0.00 0.00 34.87 2.43
5565 6701 6.371548 TGAAGGATAAGAACCAATCTTTCACG 59.628 38.462 5.95 0.00 46.39 4.35
5576 6712 4.976116 CCAATCTTTCACGTTTCAAAGGAC 59.024 41.667 10.17 0.00 31.55 3.85
5658 6797 7.187824 TCCCTATAGGAAATGAGATACATGC 57.812 40.000 21.07 0.00 43.78 4.06
5681 6820 3.261981 TCTCGCTTCCTATGGTTTTCC 57.738 47.619 0.00 0.00 41.14 3.13
5688 6827 5.687706 CGCTTCCTATGGTTTTCCTATTCCT 60.688 44.000 0.00 0.00 41.38 3.36
5692 6831 8.575736 TTCCTATGGTTTTCCTATTCCTATGA 57.424 34.615 0.00 0.00 41.38 2.15
5724 6874 4.090819 CCTATAAGGAGGCCTAAGGAGAC 58.909 52.174 4.42 0.00 37.67 3.36
5725 6875 4.202738 CCTATAAGGAGGCCTAAGGAGACT 60.203 50.000 4.42 0.00 39.73 3.24
5806 6968 0.873054 CTGCAAAGTGAGCTGTGAGG 59.127 55.000 0.00 0.00 31.54 3.86
5843 7012 3.814283 CGAGGACCTCTACTAGCGTTTAT 59.186 47.826 19.39 0.00 0.00 1.40
5893 7075 4.225492 AGATGGCCAAGATATGAGAGATGG 59.775 45.833 10.96 0.00 0.00 3.51
5941 7124 1.745141 GCATCAAGGACGGAGCAGATT 60.745 52.381 0.00 0.00 0.00 2.40
5943 7126 0.976641 TCAAGGACGGAGCAGATTGT 59.023 50.000 0.00 0.00 0.00 2.71
5999 7184 4.049186 TGCAAGAGTACTTCGACAAGTTC 58.951 43.478 0.00 0.00 40.16 3.01
6026 7211 1.755959 GGAGAGAATGAGAGCTCTGCA 59.244 52.381 23.91 18.56 45.46 4.41
6076 7269 1.829457 CAACGAACGTTTTGTGTGACG 59.171 47.619 9.87 0.73 44.34 4.35
6082 7276 0.515564 CGTTTTGTGTGACGGATCCC 59.484 55.000 6.06 0.00 35.74 3.85
6097 7292 2.530701 GATCCCGGAGTATGAGGTCAT 58.469 52.381 0.73 0.00 40.22 3.06
6151 7351 0.401738 ATGGGCCCTGATTGTATCCG 59.598 55.000 25.70 0.00 0.00 4.18
6230 7439 6.916360 TTTAGCCTCATTTTCCAGTCAAAT 57.084 33.333 0.00 0.00 0.00 2.32
6237 7450 7.148018 GCCTCATTTTCCAGTCAAATAAGATGA 60.148 37.037 0.00 0.00 0.00 2.92
6239 7452 8.055279 TCATTTTCCAGTCAAATAAGATGACC 57.945 34.615 3.23 0.00 46.60 4.02
6240 7453 7.669304 TCATTTTCCAGTCAAATAAGATGACCA 59.331 33.333 3.23 0.00 46.60 4.02
6241 7454 8.472413 CATTTTCCAGTCAAATAAGATGACCAT 58.528 33.333 3.23 0.00 46.60 3.55
6242 7455 7.395190 TTTCCAGTCAAATAAGATGACCATG 57.605 36.000 3.23 0.00 46.60 3.66
6243 7456 6.312141 TCCAGTCAAATAAGATGACCATGA 57.688 37.500 0.00 0.00 46.60 3.07
6244 7457 6.115446 TCCAGTCAAATAAGATGACCATGAC 58.885 40.000 0.00 0.00 46.60 3.06
6245 7458 5.297776 CCAGTCAAATAAGATGACCATGACC 59.702 44.000 0.00 0.00 46.60 4.02
6253 7466 4.065321 AGATGACCATGACCGAAGAATC 57.935 45.455 0.00 0.00 0.00 2.52
6292 7505 6.893020 AGTACCAATCTTCAAGAATAGGGT 57.107 37.500 0.00 0.00 0.00 4.34
6294 7507 5.520748 ACCAATCTTCAAGAATAGGGTGT 57.479 39.130 0.00 0.00 0.00 4.16
6295 7508 5.256474 ACCAATCTTCAAGAATAGGGTGTG 58.744 41.667 0.00 0.00 0.00 3.82
6296 7509 5.222130 ACCAATCTTCAAGAATAGGGTGTGT 60.222 40.000 0.00 0.00 0.00 3.72
6298 7511 4.974645 TCTTCAAGAATAGGGTGTGTGT 57.025 40.909 0.00 0.00 0.00 3.72
6300 7513 4.102524 TCTTCAAGAATAGGGTGTGTGTGT 59.897 41.667 0.00 0.00 0.00 3.72
6361 7584 3.470709 TGAGCCATAACTGAAGCTATGC 58.529 45.455 0.00 0.00 35.23 3.14
6376 7603 2.049959 CTATGCGAGAGTCATTGAGCG 58.950 52.381 0.00 0.00 0.00 5.03
6379 7606 1.140589 CGAGAGTCATTGAGCGCCT 59.859 57.895 2.29 0.00 0.00 5.52
6433 7660 1.000843 GTTTGGTTTCATGCCTGGGAC 59.999 52.381 0.00 0.00 0.00 4.46
6434 7661 0.482446 TTGGTTTCATGCCTGGGACT 59.518 50.000 0.00 0.00 0.00 3.85
6435 7662 0.038166 TGGTTTCATGCCTGGGACTC 59.962 55.000 0.00 0.00 0.00 3.36
6436 7663 0.329596 GGTTTCATGCCTGGGACTCT 59.670 55.000 0.00 0.00 0.00 3.24
6437 7664 1.457346 GTTTCATGCCTGGGACTCTG 58.543 55.000 0.00 0.00 0.00 3.35
6438 7665 1.003580 GTTTCATGCCTGGGACTCTGA 59.996 52.381 0.00 0.00 0.00 3.27
6439 7666 0.907486 TTCATGCCTGGGACTCTGAG 59.093 55.000 2.45 2.45 0.00 3.35
6440 7667 0.041684 TCATGCCTGGGACTCTGAGA 59.958 55.000 12.44 0.00 0.00 3.27
6453 7685 0.039764 TCTGAGAGGTCGACCATGGT 59.960 55.000 35.00 19.89 38.89 3.55
6454 7686 0.898320 CTGAGAGGTCGACCATGGTT 59.102 55.000 35.00 15.47 38.89 3.67
6455 7687 1.276421 CTGAGAGGTCGACCATGGTTT 59.724 52.381 35.00 14.66 38.89 3.27
6529 7772 4.158394 GCATATGGTGTTCATTGACTTGGT 59.842 41.667 4.56 0.00 37.30 3.67
6537 7780 3.140325 TCATTGACTTGGTGAAGGTCC 57.860 47.619 0.00 0.00 32.95 4.46
6538 7781 1.806542 CATTGACTTGGTGAAGGTCCG 59.193 52.381 0.00 0.00 32.95 4.79
6540 7783 0.391597 TGACTTGGTGAAGGTCCGTC 59.608 55.000 0.00 0.00 32.95 4.79
6542 7785 0.680061 ACTTGGTGAAGGTCCGTCTC 59.320 55.000 6.37 2.47 32.95 3.36
6543 7786 0.037232 CTTGGTGAAGGTCCGTCTCC 60.037 60.000 16.43 16.43 0.00 3.71
6544 7787 0.761323 TTGGTGAAGGTCCGTCTCCA 60.761 55.000 20.58 20.58 36.98 3.86
6545 7788 1.185618 TGGTGAAGGTCCGTCTCCAG 61.186 60.000 20.58 0.00 34.53 3.86
6546 7789 0.898789 GGTGAAGGTCCGTCTCCAGA 60.899 60.000 17.87 0.00 0.00 3.86
6547 7790 1.187087 GTGAAGGTCCGTCTCCAGAT 58.813 55.000 6.37 0.00 0.00 2.90
6548 7791 1.134965 GTGAAGGTCCGTCTCCAGATG 60.135 57.143 6.37 0.00 0.00 2.90
6549 7792 0.179097 GAAGGTCCGTCTCCAGATGC 60.179 60.000 0.00 0.00 0.00 3.91
6550 7793 0.904865 AAGGTCCGTCTCCAGATGCA 60.905 55.000 0.00 0.00 0.00 3.96
6551 7794 1.153549 GGTCCGTCTCCAGATGCAC 60.154 63.158 0.00 0.00 0.00 4.57
6552 7795 1.153549 GTCCGTCTCCAGATGCACC 60.154 63.158 0.00 0.00 0.00 5.01
6553 7796 1.305297 TCCGTCTCCAGATGCACCT 60.305 57.895 0.00 0.00 0.00 4.00
6554 7797 0.033503 TCCGTCTCCAGATGCACCTA 60.034 55.000 0.00 0.00 0.00 3.08
6555 7798 0.824109 CCGTCTCCAGATGCACCTAA 59.176 55.000 0.00 0.00 0.00 2.69
6556 7799 1.202463 CCGTCTCCAGATGCACCTAAG 60.202 57.143 0.00 0.00 0.00 2.18
6557 7800 1.202463 CGTCTCCAGATGCACCTAAGG 60.202 57.143 0.00 0.00 0.00 2.69
6558 7801 2.111384 GTCTCCAGATGCACCTAAGGA 58.889 52.381 0.00 0.00 0.00 3.36
6559 7802 2.102252 GTCTCCAGATGCACCTAAGGAG 59.898 54.545 7.99 7.99 43.05 3.69
6613 7858 2.158608 CCTTGGAGAAACACAAGTCCCT 60.159 50.000 0.00 0.00 41.84 4.20
6657 7903 3.869065 AGGACATGTACGGTAATGTTGG 58.131 45.455 1.41 0.00 37.15 3.77
6705 7953 4.058817 GGCACGGATGACTTCCTAATTAG 58.941 47.826 5.43 5.43 42.99 1.73
6733 7981 2.092103 ACTGCACCAAGGGTCAACTTTA 60.092 45.455 0.00 0.00 31.02 1.85
6766 8017 2.747396 TTTGCTTTGGTGATGGATGC 57.253 45.000 0.00 0.00 0.00 3.91
6831 8168 4.455533 TCTTTGTGTATGATGTGGTGCTTC 59.544 41.667 0.00 0.00 0.00 3.86
6838 8175 1.078759 GATGTGGTGCTTCTCGACGG 61.079 60.000 0.00 0.00 0.00 4.79
6847 8184 1.467713 GCTTCTCGACGGTAGTTGGAG 60.468 57.143 0.00 0.00 34.53 3.86
6895 8236 4.453819 GTGGAGACAGACTTTGGAATTGAG 59.546 45.833 0.00 0.00 44.46 3.02
6952 8297 3.871594 GTGAGGTGCGCTTTCAATACTAT 59.128 43.478 9.73 0.00 0.00 2.12
6960 8324 4.272504 GCGCTTTCAATACTATTAGCCACA 59.727 41.667 0.00 0.00 0.00 4.17
6990 8378 1.212935 GCCTTGATGGACAGGTGGTAT 59.787 52.381 0.00 0.00 38.35 2.73
7004 8392 4.020218 CAGGTGGTATCTCAGAAGGACAAA 60.020 45.833 0.00 0.00 0.00 2.83
7019 8407 7.499232 CAGAAGGACAAATTTCGATATTAGGGT 59.501 37.037 1.35 1.70 0.00 4.34
7146 8558 4.547671 AGCTAACAGGCAGGTTCTATAGA 58.452 43.478 0.00 0.00 32.29 1.98
7300 8741 6.699204 CAGGAATGATGATATACGTGATAGCC 59.301 42.308 0.00 0.00 0.00 3.93
7301 8742 6.381133 AGGAATGATGATATACGTGATAGCCA 59.619 38.462 0.00 0.00 0.00 4.75
7305 8746 4.783764 TGATATACGTGATAGCCAGGTG 57.216 45.455 0.00 0.00 43.05 4.00
7358 8820 4.431416 TTGGGCATATACAACACTAGGG 57.569 45.455 0.00 0.00 0.00 3.53
7409 8872 2.642139 AAATCGTGCTGAATTGCTGG 57.358 45.000 0.00 0.00 0.00 4.85
7410 8873 1.825090 AATCGTGCTGAATTGCTGGA 58.175 45.000 0.00 0.00 0.00 3.86
7430 8893 1.213296 AATGCCAAGATAGTCGGGGT 58.787 50.000 0.00 0.00 0.00 4.95
7496 8991 2.032071 GGACGGGTGTGTGGAAGG 59.968 66.667 0.00 0.00 0.00 3.46
7497 8992 2.513259 GGACGGGTGTGTGGAAGGA 61.513 63.158 0.00 0.00 0.00 3.36
7498 8993 1.448497 GACGGGTGTGTGGAAGGAA 59.552 57.895 0.00 0.00 0.00 3.36
7499 8994 0.602905 GACGGGTGTGTGGAAGGAAG 60.603 60.000 0.00 0.00 0.00 3.46
7582 9114 2.602660 CGGAAAGGCTTTGTTGTTGTTG 59.397 45.455 18.79 0.00 0.00 3.33
7583 9115 3.595173 GGAAAGGCTTTGTTGTTGTTGT 58.405 40.909 18.79 0.00 0.00 3.32
7584 9116 4.000325 GGAAAGGCTTTGTTGTTGTTGTT 59.000 39.130 18.79 0.00 0.00 2.83
7585 9117 4.142924 GGAAAGGCTTTGTTGTTGTTGTTG 60.143 41.667 18.79 0.00 0.00 3.33
7586 9118 3.951775 AGGCTTTGTTGTTGTTGTTGA 57.048 38.095 0.00 0.00 0.00 3.18
7587 9119 4.264460 AGGCTTTGTTGTTGTTGTTGAA 57.736 36.364 0.00 0.00 0.00 2.69
7588 9120 4.831107 AGGCTTTGTTGTTGTTGTTGAAT 58.169 34.783 0.00 0.00 0.00 2.57
7589 9121 4.869861 AGGCTTTGTTGTTGTTGTTGAATC 59.130 37.500 0.00 0.00 0.00 2.52
7590 9122 4.869861 GGCTTTGTTGTTGTTGTTGAATCT 59.130 37.500 0.00 0.00 0.00 2.40
7591 9123 5.220453 GGCTTTGTTGTTGTTGTTGAATCTG 60.220 40.000 0.00 0.00 0.00 2.90
7592 9124 5.220453 GCTTTGTTGTTGTTGTTGAATCTGG 60.220 40.000 0.00 0.00 0.00 3.86
7594 9126 5.651387 TGTTGTTGTTGTTGAATCTGGAA 57.349 34.783 0.00 0.00 0.00 3.53
7595 9127 6.030548 TGTTGTTGTTGTTGAATCTGGAAA 57.969 33.333 0.00 0.00 0.00 3.13
7596 9128 6.459066 TGTTGTTGTTGTTGAATCTGGAAAA 58.541 32.000 0.00 0.00 0.00 2.29
7597 9129 7.102346 TGTTGTTGTTGTTGAATCTGGAAAAT 58.898 30.769 0.00 0.00 0.00 1.82
7624 9156 1.915141 CAAATGTGGAAGCCCAGAGT 58.085 50.000 0.00 0.00 44.55 3.24
7705 9248 7.177568 TGAAGTATGGTTATTTTGGCAGCTTTA 59.822 33.333 0.00 0.00 0.00 1.85
7736 9280 4.219725 TGTGCAGTGTCTATTGCTGTAGTA 59.780 41.667 0.00 0.00 39.95 1.82
7745 9289 9.021863 GTGTCTATTGCTGTAGTAACTACATTC 57.978 37.037 0.00 0.00 44.49 2.67
7767 9311 9.014297 CATTCTTAATCTAGTGTTTGGAAACCT 57.986 33.333 0.00 0.46 38.11 3.50
7862 9472 6.059787 AGGAAGACTGAAGCTAATGTGATT 57.940 37.500 0.00 0.00 0.00 2.57
7876 9486 8.362639 AGCTAATGTGATTTGTTCTGTGAAATT 58.637 29.630 0.00 0.00 0.00 1.82
7877 9487 8.430063 GCTAATGTGATTTGTTCTGTGAAATTG 58.570 33.333 0.00 0.00 0.00 2.32
7944 9554 2.930682 GGAATCGCAAGTCTTCAGGTAC 59.069 50.000 0.00 0.00 39.48 3.34
8057 9667 1.739466 GCATCTGGAACAAGAATGCGA 59.261 47.619 0.00 0.00 38.70 5.10
8104 9714 1.404717 CCATCTTCAGGTCCGTCACAG 60.405 57.143 0.00 0.00 0.00 3.66
8234 9844 1.686587 TCTGGCTCTGAAACAGTCGAA 59.313 47.619 7.77 0.00 34.02 3.71
8320 9934 9.295825 ACCTGTCAAATTATTCTGTTGATAACA 57.704 29.630 0.00 0.00 39.52 2.41
8441 10057 9.729023 TTATTTTTCTTGTACATGTGTGTTCTG 57.271 29.630 9.11 0.00 39.77 3.02
8540 10157 6.183359 GCGTGTACTTCTAATCTGACAGTTTC 60.183 42.308 1.59 0.00 0.00 2.78
8543 10160 9.909644 GTGTACTTCTAATCTGACAGTTTCTTA 57.090 33.333 1.59 0.00 0.00 2.10
8624 10243 3.118075 TGCAGAAACCGAATATGGGATGA 60.118 43.478 0.28 0.00 0.00 2.92
8637 10257 4.996788 ATGGGATGACTTTGAAGCAATC 57.003 40.909 0.00 0.00 0.00 2.67
8640 10260 4.943705 TGGGATGACTTTGAAGCAATCTAC 59.056 41.667 0.00 2.76 0.00 2.59
8648 10268 7.661437 TGACTTTGAAGCAATCTACACAACTAT 59.339 33.333 0.00 0.00 0.00 2.12
8676 10296 2.105006 AAGAACTGCATGCTCGTGAT 57.895 45.000 20.33 5.78 0.00 3.06
8696 10318 6.019881 CGTGATTACACATGAATATGACGTGT 60.020 38.462 0.00 0.00 46.20 4.49
8697 10319 7.464045 CGTGATTACACATGAATATGACGTGTT 60.464 37.037 0.00 0.00 46.20 3.32
8698 10320 7.635973 GTGATTACACATGAATATGACGTGTTG 59.364 37.037 0.00 5.31 45.32 3.33
8699 10321 7.547370 TGATTACACATGAATATGACGTGTTGA 59.453 33.333 0.00 0.00 37.73 3.18
8700 10322 5.530519 ACACATGAATATGACGTGTTGAC 57.469 39.130 0.00 0.00 37.73 3.18
8701 10323 5.237815 ACACATGAATATGACGTGTTGACT 58.762 37.500 0.00 0.00 37.73 3.41
8702 10324 5.700832 ACACATGAATATGACGTGTTGACTT 59.299 36.000 0.00 0.00 37.73 3.01
8703 10325 6.017325 CACATGAATATGACGTGTTGACTTG 58.983 40.000 0.00 0.00 37.73 3.16
8710 10332 3.804036 TGACGTGTTGACTTGGATCTTT 58.196 40.909 0.00 0.00 0.00 2.52
8744 10366 9.667107 TCCTGTCTCAGAAAATATATCGTTTTT 57.333 29.630 0.00 0.00 32.44 1.94
8812 10436 3.282831 GCTTACGAGCCAAAACACATT 57.717 42.857 0.00 0.00 43.29 2.71
8832 10456 9.330063 ACACATTATGTTTGATGAATAGATCGT 57.670 29.630 0.00 0.00 38.98 3.73
8894 10528 2.101415 ACAAGGAAGCTGAACCAAAAGC 59.899 45.455 7.44 0.00 39.82 3.51
8922 10559 0.606604 ACCAAACCGCGTCTACTGAT 59.393 50.000 4.92 0.00 0.00 2.90
8976 10631 7.607250 AGTCAACCGATCATAGAAATATCTCC 58.393 38.462 0.00 0.00 37.10 3.71
8979 10637 8.651389 TCAACCGATCATAGAAATATCTCCTTT 58.349 33.333 0.00 0.00 37.10 3.11
8998 10656 6.340522 TCCTTTCTTCTTTCCTTTTGCTTTG 58.659 36.000 0.00 0.00 0.00 2.77
8999 10657 5.007039 CCTTTCTTCTTTCCTTTTGCTTTGC 59.993 40.000 0.00 0.00 0.00 3.68
9007 10665 3.976169 TCCTTTTGCTTTGCACACATAC 58.024 40.909 0.00 0.00 38.71 2.39
9063 10721 8.412456 TCTATTCATCTCAGATCTGAAGTTCAC 58.588 37.037 25.09 0.00 39.39 3.18
9091 10751 1.738099 CGGTGTTCTCTTCCCAGCG 60.738 63.158 0.00 0.00 42.54 5.18
9099 10759 1.306141 TCTTCCCAGCGTGGATCCT 60.306 57.895 14.23 0.00 40.96 3.24
9100 10760 0.032515 TCTTCCCAGCGTGGATCCTA 60.033 55.000 14.23 0.00 40.96 2.94
9101 10761 0.830648 CTTCCCAGCGTGGATCCTAA 59.169 55.000 14.23 0.00 40.96 2.69
9106 10766 0.861837 CAGCGTGGATCCTAAATCGC 59.138 55.000 14.23 18.80 43.16 4.58
9107 10767 0.597637 AGCGTGGATCCTAAATCGCG 60.598 55.000 14.23 0.00 46.47 5.87
9108 10768 1.557443 GCGTGGATCCTAAATCGCGG 61.557 60.000 14.23 0.00 34.88 6.46
9109 10769 0.031585 CGTGGATCCTAAATCGCGGA 59.968 55.000 14.23 0.00 0.00 5.54
9110 10770 1.499049 GTGGATCCTAAATCGCGGAC 58.501 55.000 14.23 0.00 30.90 4.79
9111 10771 0.031585 TGGATCCTAAATCGCGGACG 59.968 55.000 14.23 0.00 42.01 4.79
9112 10772 1.282930 GGATCCTAAATCGCGGACGC 61.283 60.000 6.13 6.63 39.84 5.19
9113 10773 1.282930 GATCCTAAATCGCGGACGCC 61.283 60.000 6.13 0.00 39.84 5.68
9161 10821 0.657840 GTGCACTTGACGAACTGCTT 59.342 50.000 10.32 0.00 0.00 3.91
9169 10829 6.466097 GCACTTGACGAACTGCTTAATTATTC 59.534 38.462 0.00 0.00 0.00 1.75
9191 10851 2.616256 CCAGATACAGCTTCCTTGTGCA 60.616 50.000 0.00 0.00 0.00 4.57
9193 10853 3.311871 CAGATACAGCTTCCTTGTGCATC 59.688 47.826 0.00 0.00 0.00 3.91
9198 10858 2.681848 CAGCTTCCTTGTGCATCCTTAG 59.318 50.000 0.00 0.00 0.00 2.18
9205 10867 4.962362 TCCTTGTGCATCCTTAGTCTGATA 59.038 41.667 0.00 0.00 0.00 2.15
9211 10873 7.112122 TGTGCATCCTTAGTCTGATATTGTTT 58.888 34.615 0.00 0.00 0.00 2.83
9239 10902 8.309163 CAACTTCCTTGCTTTTATAATTGCAA 57.691 30.769 18.36 18.36 42.16 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.874390 GCGAGAGGCATGTGTTGAAA 59.126 50.000 0.00 0.00 42.87 2.69
8 9 1.061711 CTTTCTTTCGCGAGAGGCATG 59.938 52.381 24.53 11.27 43.84 4.06
106 254 3.279434 AGAAAGACACGGTTTTGCTTCT 58.721 40.909 0.00 0.00 0.00 2.85
158 325 1.964373 GGCCGTGCCTCTCGAAAAA 60.964 57.895 7.58 0.00 46.69 1.94
177 344 4.464008 AGAGAGGAACAATTGTGCTTTCA 58.536 39.130 16.28 0.00 0.00 2.69
188 375 6.569780 GGTTTTGCTTTTAAGAGAGGAACAA 58.430 36.000 0.00 0.00 0.00 2.83
258 455 4.636435 ACGGCCACTTGGGAACGG 62.636 66.667 2.24 0.00 41.22 4.44
259 456 3.353836 CACGGCCACTTGGGAACG 61.354 66.667 2.24 0.00 42.20 3.95
260 457 2.112297 TCACGGCCACTTGGGAAC 59.888 61.111 2.24 0.00 40.01 3.62
263 460 2.358737 GAGTCACGGCCACTTGGG 60.359 66.667 2.24 0.00 40.85 4.12
264 461 1.374758 GAGAGTCACGGCCACTTGG 60.375 63.158 2.24 0.00 38.53 3.61
265 462 1.734477 CGAGAGTCACGGCCACTTG 60.734 63.158 2.24 0.00 0.00 3.16
267 464 4.057428 GCGAGAGTCACGGCCACT 62.057 66.667 11.95 0.00 0.00 4.00
404 663 3.634568 TTCGATGTTTCGGTTTTGCAT 57.365 38.095 0.00 0.00 45.53 3.96
479 787 1.038130 GCTCTGGACGCTCCCTCTAA 61.038 60.000 2.23 0.00 35.03 2.10
480 788 1.454111 GCTCTGGACGCTCCCTCTA 60.454 63.158 2.23 0.00 35.03 2.43
621 938 2.812358 ACGGATTGGCTTTGAAAACC 57.188 45.000 0.00 0.00 0.00 3.27
622 939 4.857037 GTGATACGGATTGGCTTTGAAAAC 59.143 41.667 0.00 0.00 0.00 2.43
785 1103 2.048503 GGTGGAAGTGGACGGTCG 60.049 66.667 1.43 0.00 0.00 4.79
849 1167 0.031857 TTTCGGAGGTTGACGCGTTA 59.968 50.000 15.53 6.34 0.00 3.18
1318 1637 1.376466 CATCATAGGGAAGGGGCGG 59.624 63.158 0.00 0.00 0.00 6.13
1323 1642 1.376466 CGGGGCATCATAGGGAAGG 59.624 63.158 0.00 0.00 0.00 3.46
1590 1909 0.600057 CTGCTTTTGGAACAGCCCTC 59.400 55.000 0.00 0.00 42.39 4.30
1641 1960 2.293399 CAGCAGCTTAACCCGAAACTTT 59.707 45.455 0.00 0.00 0.00 2.66
1739 2078 7.326789 CCATTGCACAATATCATAATTTCGGAC 59.673 37.037 0.00 0.00 0.00 4.79
1756 2095 5.931146 GGAACATCATAAAAACCATTGCACA 59.069 36.000 0.00 0.00 0.00 4.57
1759 2098 7.099120 AGAAGGAACATCATAAAAACCATTGC 58.901 34.615 0.00 0.00 0.00 3.56
1761 2100 8.869109 TGAAGAAGGAACATCATAAAAACCATT 58.131 29.630 0.00 0.00 0.00 3.16
1772 2112 9.987272 CATATATGTAGTGAAGAAGGAACATCA 57.013 33.333 4.43 0.00 0.00 3.07
1773 2113 9.988815 ACATATATGTAGTGAAGAAGGAACATC 57.011 33.333 16.85 0.00 39.68 3.06
1823 2163 7.201702 TGTATCATAACAATCCCACTTACCA 57.798 36.000 0.00 0.00 0.00 3.25
1824 2164 7.990886 TCTTGTATCATAACAATCCCACTTACC 59.009 37.037 0.00 0.00 38.61 2.85
1825 2165 8.958119 TCTTGTATCATAACAATCCCACTTAC 57.042 34.615 0.00 0.00 38.61 2.34
1826 2166 9.967451 TTTCTTGTATCATAACAATCCCACTTA 57.033 29.630 0.00 0.00 38.61 2.24
1827 2167 8.877864 TTTCTTGTATCATAACAATCCCACTT 57.122 30.769 0.00 0.00 38.61 3.16
1828 2168 9.125026 GATTTCTTGTATCATAACAATCCCACT 57.875 33.333 0.00 0.00 38.61 4.00
1829 2169 9.125026 AGATTTCTTGTATCATAACAATCCCAC 57.875 33.333 0.00 0.00 38.61 4.61
1830 2170 9.123902 CAGATTTCTTGTATCATAACAATCCCA 57.876 33.333 0.00 0.00 38.61 4.37
1831 2171 9.125026 ACAGATTTCTTGTATCATAACAATCCC 57.875 33.333 0.00 0.00 38.61 3.85
2021 2363 8.389779 ACTCTCACTACTGTGTATCATATCAG 57.610 38.462 0.00 0.00 44.14 2.90
2033 2375 8.470805 CAACCATTAGAATACTCTCACTACTGT 58.529 37.037 0.00 0.00 32.70 3.55
2044 2386 6.070538 AGCAGAGTGTCAACCATTAGAATACT 60.071 38.462 0.00 0.00 0.00 2.12
2169 2511 4.921515 GTCACAGTGTCGAGCAAAGTATTA 59.078 41.667 0.00 0.00 0.00 0.98
2181 2523 1.153597 TTGCTGCTGTCACAGTGTCG 61.154 55.000 6.68 0.00 39.96 4.35
2212 2554 4.580167 TGGTGAAAAGAGAATTGTGGTGAG 59.420 41.667 0.00 0.00 0.00 3.51
2220 2566 6.310149 ACTCAAGGATGGTGAAAAGAGAATT 58.690 36.000 0.00 0.00 0.00 2.17
2239 2585 5.073280 TCAGTATAGCTAGGAGGCTACTCAA 59.927 44.000 0.20 0.00 45.82 3.02
2418 2764 7.936584 TGTAAAATGAACCAGAAGTACCAAAG 58.063 34.615 0.00 0.00 0.00 2.77
2506 2852 2.149578 GACTGATCAGCATACATGGGC 58.850 52.381 22.83 0.00 0.00 5.36
2531 2877 7.342284 ACCCTATTGATGGTCTATCGGTATTAG 59.658 40.741 0.00 0.00 38.71 1.73
2534 2880 5.590818 ACCCTATTGATGGTCTATCGGTAT 58.409 41.667 0.00 0.00 38.71 2.73
2537 2883 4.891992 AACCCTATTGATGGTCTATCGG 57.108 45.455 0.00 0.00 38.71 4.18
2543 2889 6.126409 TCACCAAATAACCCTATTGATGGTC 58.874 40.000 0.00 0.00 36.86 4.02
2813 3323 4.096231 TCTGGGCAACACAAATATCGAATG 59.904 41.667 0.00 0.00 39.74 2.67
2862 3372 7.663081 ACATGTAGAATCAAACAGAGTGTCAAT 59.337 33.333 0.00 0.00 0.00 2.57
2869 3379 6.245115 TGCAACATGTAGAATCAAACAGAG 57.755 37.500 0.00 0.00 0.00 3.35
2870 3380 6.822667 ATGCAACATGTAGAATCAAACAGA 57.177 33.333 0.00 0.00 0.00 3.41
2945 3455 7.254151 GCATCTTCACCGATCTCTTTAAACTAC 60.254 40.741 0.00 0.00 0.00 2.73
2954 3464 2.762887 TCTTGCATCTTCACCGATCTCT 59.237 45.455 0.00 0.00 0.00 3.10
2993 3503 6.422333 TGATTGTATTGAGGATTTACCAGCA 58.578 36.000 0.00 0.00 42.04 4.41
3116 3628 4.640771 AACAATCCTGTGACTACCATGT 57.359 40.909 0.00 0.00 35.37 3.21
3130 3642 5.844301 AATTGATGCGTTTCAAACAATCC 57.156 34.783 0.22 0.00 38.98 3.01
3199 3715 7.720074 ACTTCAAAGAGTTAAGAGTTTAAGGGG 59.280 37.037 0.00 0.00 29.71 4.79
3216 3732 8.098286 TCCCGTCTGAATTAATTACTTCAAAGA 58.902 33.333 16.32 10.15 31.40 2.52
3237 3753 2.544844 TTAAGAGATGGAGGTCCCGT 57.455 50.000 0.00 0.00 37.93 5.28
3293 3810 8.941977 CACATGTTAAGTATACTGCAACCTTTA 58.058 33.333 20.07 8.50 0.00 1.85
3297 3814 6.978343 TCACATGTTAAGTATACTGCAACC 57.022 37.500 20.07 9.09 0.00 3.77
3314 3831 4.568956 TGGAGACACAGTAACATCACATG 58.431 43.478 0.00 0.00 33.40 3.21
3315 3832 4.890158 TGGAGACACAGTAACATCACAT 57.110 40.909 0.00 0.00 33.40 3.21
3440 3957 6.540189 ACTTCATAGTTCTGGTGATAACATGC 59.460 38.462 0.00 0.00 0.00 4.06
3482 4000 5.596845 TGCTGGAACAAAGAATAACAAACC 58.403 37.500 0.00 0.00 38.70 3.27
3644 4162 6.854496 AGAAAGTGAATACAGCAAACGTTA 57.146 33.333 0.00 0.00 0.00 3.18
3647 4165 6.467723 ACTAGAAAGTGAATACAGCAAACG 57.532 37.500 0.00 0.00 33.57 3.60
3726 4244 5.959618 AAGAAAGAAAAGTACGGATTGGG 57.040 39.130 0.00 0.00 0.00 4.12
3732 4250 6.495706 AGCAGAAAAAGAAAGAAAAGTACGG 58.504 36.000 0.00 0.00 0.00 4.02
3742 4260 5.218139 CAGTTGGCTAGCAGAAAAAGAAAG 58.782 41.667 18.24 0.00 0.00 2.62
3745 4263 3.149196 CCAGTTGGCTAGCAGAAAAAGA 58.851 45.455 18.24 0.00 0.00 2.52
3747 4265 3.222173 TCCAGTTGGCTAGCAGAAAAA 57.778 42.857 18.24 0.00 34.44 1.94
3748 4266 2.949177 TCCAGTTGGCTAGCAGAAAA 57.051 45.000 18.24 2.10 34.44 2.29
3749 4267 2.949177 TTCCAGTTGGCTAGCAGAAA 57.051 45.000 18.24 4.80 34.44 2.52
3750 4268 2.949177 TTTCCAGTTGGCTAGCAGAA 57.051 45.000 18.24 5.64 34.44 3.02
3751 4269 2.949177 TTTTCCAGTTGGCTAGCAGA 57.051 45.000 18.24 0.42 34.44 4.26
3752 4270 3.149196 TCTTTTTCCAGTTGGCTAGCAG 58.851 45.455 18.24 0.21 34.44 4.24
3753 4271 3.222173 TCTTTTTCCAGTTGGCTAGCA 57.778 42.857 18.24 0.00 34.44 3.49
3782 4300 4.523083 TGAAGAGCTGTAACAAACTTGGT 58.477 39.130 0.00 0.00 0.00 3.67
3797 4315 0.600057 CCCAACAAAGGCTGAAGAGC 59.400 55.000 0.00 0.00 45.40 4.09
3825 4343 6.823689 GTCAAGGACATGCTTAAGGAGAAATA 59.176 38.462 4.29 0.00 32.09 1.40
3828 4346 4.287067 AGTCAAGGACATGCTTAAGGAGAA 59.713 41.667 4.29 0.00 34.60 2.87
3834 4352 4.503741 GCAAAGTCAAGGACATGCTTAA 57.496 40.909 15.44 0.00 41.24 1.85
3837 4355 2.283145 AGCAAAGTCAAGGACATGCT 57.717 45.000 18.08 18.08 45.79 3.79
3845 4363 9.387123 GATAAAAACAACTAGAGCAAAGTCAAG 57.613 33.333 0.00 0.00 0.00 3.02
3853 4371 7.877612 TGAGTGATGATAAAAACAACTAGAGCA 59.122 33.333 0.00 0.00 0.00 4.26
3869 4387 8.800332 AGAGCTTTAACAAAATTGAGTGATGAT 58.200 29.630 0.00 0.00 0.00 2.45
3894 4412 8.141268 ACACCACCAATAAGAAACACAATAAAG 58.859 33.333 0.00 0.00 0.00 1.85
3939 4457 8.686334 GGAAGACAAATAAATGCAAAGGATCTA 58.314 33.333 0.00 0.00 0.00 1.98
3964 4482 5.121768 GCCGCTACACTGGTAATAATAATGG 59.878 44.000 0.00 0.00 0.00 3.16
4018 4536 7.448469 ACACAACTATCAAAAGCTGGAATAGTT 59.552 33.333 13.90 13.90 34.76 2.24
4019 4537 6.942576 ACACAACTATCAAAAGCTGGAATAGT 59.057 34.615 0.00 0.00 0.00 2.12
4067 4585 7.912250 CACACAACTATCAAAAGCTGGAATATC 59.088 37.037 0.00 0.00 0.00 1.63
4068 4586 7.394359 ACACACAACTATCAAAAGCTGGAATAT 59.606 33.333 0.00 0.00 0.00 1.28
4069 4587 6.714810 ACACACAACTATCAAAAGCTGGAATA 59.285 34.615 0.00 0.00 0.00 1.75
4070 4588 5.536161 ACACACAACTATCAAAAGCTGGAAT 59.464 36.000 0.00 0.00 0.00 3.01
4071 4589 4.887071 ACACACAACTATCAAAAGCTGGAA 59.113 37.500 0.00 0.00 0.00 3.53
4072 4590 4.275689 CACACACAACTATCAAAAGCTGGA 59.724 41.667 0.00 0.00 0.00 3.86
4073 4591 4.275689 TCACACACAACTATCAAAAGCTGG 59.724 41.667 0.00 0.00 0.00 4.85
4074 4592 5.422666 TCACACACAACTATCAAAAGCTG 57.577 39.130 0.00 0.00 0.00 4.24
4075 4593 6.449635 TTTCACACACAACTATCAAAAGCT 57.550 33.333 0.00 0.00 0.00 3.74
4076 4594 7.698836 ATTTTCACACACAACTATCAAAAGC 57.301 32.000 0.00 0.00 0.00 3.51
4078 4596 9.190858 GCATATTTTCACACACAACTATCAAAA 57.809 29.630 0.00 0.00 0.00 2.44
4079 4597 8.575589 AGCATATTTTCACACACAACTATCAAA 58.424 29.630 0.00 0.00 0.00 2.69
4080 4598 8.109705 AGCATATTTTCACACACAACTATCAA 57.890 30.769 0.00 0.00 0.00 2.57
4081 4599 7.686438 AGCATATTTTCACACACAACTATCA 57.314 32.000 0.00 0.00 0.00 2.15
4082 4600 8.236586 TCAAGCATATTTTCACACACAACTATC 58.763 33.333 0.00 0.00 0.00 2.08
4083 4601 8.023128 GTCAAGCATATTTTCACACACAACTAT 58.977 33.333 0.00 0.00 0.00 2.12
4084 4602 7.359595 GTCAAGCATATTTTCACACACAACTA 58.640 34.615 0.00 0.00 0.00 2.24
4085 4603 6.208644 GTCAAGCATATTTTCACACACAACT 58.791 36.000 0.00 0.00 0.00 3.16
4086 4604 5.115472 CGTCAAGCATATTTTCACACACAAC 59.885 40.000 0.00 0.00 0.00 3.32
4087 4605 5.211454 CGTCAAGCATATTTTCACACACAA 58.789 37.500 0.00 0.00 0.00 3.33
4088 4606 4.274705 ACGTCAAGCATATTTTCACACACA 59.725 37.500 0.00 0.00 0.00 3.72
4089 4607 4.612614 CACGTCAAGCATATTTTCACACAC 59.387 41.667 0.00 0.00 0.00 3.82
4090 4608 4.274705 ACACGTCAAGCATATTTTCACACA 59.725 37.500 0.00 0.00 0.00 3.72
4091 4609 4.783242 ACACGTCAAGCATATTTTCACAC 58.217 39.130 0.00 0.00 0.00 3.82
4092 4610 5.929415 TCTACACGTCAAGCATATTTTCACA 59.071 36.000 0.00 0.00 0.00 3.58
4093 4611 6.310467 TCTCTACACGTCAAGCATATTTTCAC 59.690 38.462 0.00 0.00 0.00 3.18
4094 4612 6.394809 TCTCTACACGTCAAGCATATTTTCA 58.605 36.000 0.00 0.00 0.00 2.69
4095 4613 6.887376 TCTCTACACGTCAAGCATATTTTC 57.113 37.500 0.00 0.00 0.00 2.29
4096 4614 6.238211 GCATCTCTACACGTCAAGCATATTTT 60.238 38.462 0.00 0.00 0.00 1.82
4097 4615 5.235186 GCATCTCTACACGTCAAGCATATTT 59.765 40.000 0.00 0.00 0.00 1.40
4098 4616 4.747108 GCATCTCTACACGTCAAGCATATT 59.253 41.667 0.00 0.00 0.00 1.28
4099 4617 4.038522 AGCATCTCTACACGTCAAGCATAT 59.961 41.667 0.00 0.00 0.00 1.78
4100 4618 3.381590 AGCATCTCTACACGTCAAGCATA 59.618 43.478 0.00 0.00 0.00 3.14
4101 4619 2.167281 AGCATCTCTACACGTCAAGCAT 59.833 45.455 0.00 0.00 0.00 3.79
4102 4620 1.546029 AGCATCTCTACACGTCAAGCA 59.454 47.619 0.00 0.00 0.00 3.91
4103 4621 1.923204 CAGCATCTCTACACGTCAAGC 59.077 52.381 0.00 0.00 0.00 4.01
4104 4622 1.923204 GCAGCATCTCTACACGTCAAG 59.077 52.381 0.00 0.00 0.00 3.02
4105 4623 1.404181 GGCAGCATCTCTACACGTCAA 60.404 52.381 0.00 0.00 0.00 3.18
4106 4624 0.173481 GGCAGCATCTCTACACGTCA 59.827 55.000 0.00 0.00 0.00 4.35
4107 4625 0.173481 TGGCAGCATCTCTACACGTC 59.827 55.000 0.00 0.00 0.00 4.34
4108 4626 0.608130 TTGGCAGCATCTCTACACGT 59.392 50.000 0.00 0.00 0.00 4.49
4109 4627 1.284657 CTTGGCAGCATCTCTACACG 58.715 55.000 0.00 0.00 0.00 4.49
4110 4628 2.393271 ACTTGGCAGCATCTCTACAC 57.607 50.000 0.00 0.00 0.00 2.90
4111 4629 2.568956 AGAACTTGGCAGCATCTCTACA 59.431 45.455 0.00 0.00 0.00 2.74
4112 4630 3.194062 GAGAACTTGGCAGCATCTCTAC 58.806 50.000 14.50 0.00 35.11 2.59
4113 4631 2.833943 TGAGAACTTGGCAGCATCTCTA 59.166 45.455 19.45 8.92 37.27 2.43
4171 4692 2.840651 AGCTTCCTGTGCCATACTAAGT 59.159 45.455 0.00 0.00 0.00 2.24
4195 4716 3.044235 TGCACTGTGGTAGATCTGTTG 57.956 47.619 10.21 0.00 0.00 3.33
4367 4901 9.933723 AAAGTAAGTTCTCTAATTTAGCCGTAA 57.066 29.630 0.00 0.00 0.00 3.18
4370 4904 8.718734 ACAAAAGTAAGTTCTCTAATTTAGCCG 58.281 33.333 0.00 0.00 0.00 5.52
4372 4907 9.331106 GCACAAAAGTAAGTTCTCTAATTTAGC 57.669 33.333 0.00 0.00 0.00 3.09
4380 4915 7.773690 TCCTTTTAGCACAAAAGTAAGTTCTCT 59.226 33.333 17.35 0.00 35.94 3.10
4383 4918 6.637254 GCTCCTTTTAGCACAAAAGTAAGTTC 59.363 38.462 17.35 4.98 42.30 3.01
4408 4943 1.129058 ATCAAAGTACGGCTAGGGGG 58.871 55.000 0.00 0.00 0.00 5.40
4434 4969 8.803799 GCACTTTTTAGATCAAAACGAAAAAGA 58.196 29.630 22.20 0.00 44.47 2.52
4441 4976 5.339611 CCTTCGCACTTTTTAGATCAAAACG 59.660 40.000 0.00 1.05 35.84 3.60
4548 5126 8.748412 CATTATGTTCCTCCATTTGGTTTCTTA 58.252 33.333 0.00 0.00 36.34 2.10
4566 5144 7.027874 TCCTCCAACTCCTTAACATTATGTT 57.972 36.000 15.22 15.22 43.88 2.71
4576 5155 2.116238 CCGGAATCCTCCAACTCCTTA 58.884 52.381 0.00 0.00 42.58 2.69
4675 5255 0.601558 GCCTCTTGACGTCTACCACA 59.398 55.000 17.92 0.00 0.00 4.17
4709 5297 1.194781 ACGACCAGCTTGACCAGGAT 61.195 55.000 0.00 0.00 0.00 3.24
4710 5298 1.407656 AACGACCAGCTTGACCAGGA 61.408 55.000 0.00 0.00 0.00 3.86
4711 5299 0.951040 GAACGACCAGCTTGACCAGG 60.951 60.000 0.00 0.00 0.00 4.45
4712 5300 1.284982 CGAACGACCAGCTTGACCAG 61.285 60.000 0.00 0.00 0.00 4.00
4713 5301 1.300620 CGAACGACCAGCTTGACCA 60.301 57.895 0.00 0.00 0.00 4.02
4714 5302 2.027625 CCGAACGACCAGCTTGACC 61.028 63.158 0.00 0.00 0.00 4.02
4715 5303 2.027625 CCCGAACGACCAGCTTGAC 61.028 63.158 0.00 0.00 0.00 3.18
4716 5304 2.204461 TCCCGAACGACCAGCTTGA 61.204 57.895 0.00 0.00 0.00 3.02
4730 5318 2.185004 ACATTGAGAACCAAGTCCCG 57.815 50.000 0.00 0.00 38.31 5.14
4801 5390 1.705186 TCCTCCCAAAGTTCCTGGAAG 59.295 52.381 9.92 0.00 35.85 3.46
4812 5401 2.576191 CTCCTTACCATGTCCTCCCAAA 59.424 50.000 0.00 0.00 0.00 3.28
4813 5402 2.196595 CTCCTTACCATGTCCTCCCAA 58.803 52.381 0.00 0.00 0.00 4.12
4828 5417 4.215908 TCTCGCCAATAGATACACTCCTT 58.784 43.478 0.00 0.00 0.00 3.36
4897 5490 6.299922 TCAAAACATGTGTTAGATGTACCCA 58.700 36.000 0.00 0.00 37.25 4.51
4898 5491 6.811253 TCAAAACATGTGTTAGATGTACCC 57.189 37.500 0.00 0.00 37.25 3.69
4899 5492 7.305474 CCTTCAAAACATGTGTTAGATGTACC 58.695 38.462 0.00 0.00 37.25 3.34
4900 5493 7.305474 CCCTTCAAAACATGTGTTAGATGTAC 58.695 38.462 0.00 0.00 37.25 2.90
4901 5494 6.432783 CCCCTTCAAAACATGTGTTAGATGTA 59.567 38.462 0.00 0.00 37.25 2.29
4902 5495 5.243730 CCCCTTCAAAACATGTGTTAGATGT 59.756 40.000 0.00 0.00 37.25 3.06
4903 5496 5.243730 ACCCCTTCAAAACATGTGTTAGATG 59.756 40.000 0.00 4.51 37.25 2.90
4904 5497 5.243730 CACCCCTTCAAAACATGTGTTAGAT 59.756 40.000 0.00 0.00 37.25 1.98
4905 5498 4.582656 CACCCCTTCAAAACATGTGTTAGA 59.417 41.667 0.00 0.00 37.25 2.10
4906 5499 4.795962 GCACCCCTTCAAAACATGTGTTAG 60.796 45.833 0.00 0.00 37.25 2.34
4907 5500 3.068873 GCACCCCTTCAAAACATGTGTTA 59.931 43.478 0.00 0.00 37.25 2.41
4908 5501 2.158971 GCACCCCTTCAAAACATGTGTT 60.159 45.455 0.00 0.00 40.50 3.32
4909 5502 1.412343 GCACCCCTTCAAAACATGTGT 59.588 47.619 0.00 0.00 0.00 3.72
4910 5503 1.602668 CGCACCCCTTCAAAACATGTG 60.603 52.381 0.00 0.00 0.00 3.21
4911 5504 0.673437 CGCACCCCTTCAAAACATGT 59.327 50.000 0.00 0.00 0.00 3.21
4912 5505 0.673437 ACGCACCCCTTCAAAACATG 59.327 50.000 0.00 0.00 0.00 3.21
4913 5506 0.673437 CACGCACCCCTTCAAAACAT 59.327 50.000 0.00 0.00 0.00 2.71
4914 5507 1.388065 CCACGCACCCCTTCAAAACA 61.388 55.000 0.00 0.00 0.00 2.83
4964 5557 2.270434 AGCTTAAGACATCCTCCCCA 57.730 50.000 6.67 0.00 0.00 4.96
5005 5598 5.769484 TCTAAAGAGGATGTTAGCTACGG 57.231 43.478 0.00 0.00 0.00 4.02
5061 5655 4.682787 TCAATATGGCTAGAGTGTTGACG 58.317 43.478 0.00 0.00 0.00 4.35
5078 5672 5.656859 TCTTCTCGAGAGGACCAAATCAATA 59.343 40.000 22.11 0.00 0.00 1.90
5134 5731 3.239449 TGAGGGACAACACTCTACATGT 58.761 45.455 2.69 2.69 45.87 3.21
5135 5732 3.961480 TGAGGGACAACACTCTACATG 57.039 47.619 0.00 0.00 45.87 3.21
5167 5770 3.883744 AAGCGGAAGTCAGCCACCG 62.884 63.158 0.00 0.00 46.74 4.94
5186 5789 7.041848 TCGCTTATATGATGGACACAAATTCAG 60.042 37.037 0.00 0.00 0.00 3.02
5300 6131 0.034896 TTTGCGTCACCTCCTTCCTC 59.965 55.000 0.00 0.00 0.00 3.71
5314 6145 4.142403 ACCTTCATCCACATATTGTTTGCG 60.142 41.667 0.00 0.00 0.00 4.85
5428 6260 2.004583 TAAACGCCTTCTGGACATCG 57.995 50.000 0.00 0.00 34.57 3.84
5544 6680 6.496338 AACGTGAAAGATTGGTTCTTATCC 57.504 37.500 0.00 0.00 44.09 2.59
5606 6745 5.757320 GGATGTCATTTGACTCATAGGACAG 59.243 44.000 17.86 0.00 44.99 3.51
5613 6752 4.952335 GGAAAGGGATGTCATTTGACTCAT 59.048 41.667 11.67 0.00 44.99 2.90
5658 6797 2.918712 AACCATAGGAAGCGAGATGG 57.081 50.000 0.00 0.00 43.80 3.51
5665 6804 5.696030 AGGAATAGGAAAACCATAGGAAGC 58.304 41.667 0.00 0.00 0.00 3.86
5688 6827 9.830186 GCCTCCTTATAGGATAGGAATATCATA 57.170 37.037 5.45 0.00 44.81 2.15
5692 6831 7.258877 AGGCCTCCTTATAGGATAGGAATAT 57.741 40.000 0.00 0.00 44.81 1.28
5725 6875 3.494398 GGTGTAGGCTTCTGAAACAGTCA 60.494 47.826 0.00 0.00 32.61 3.41
5738 6891 1.576272 ACTCCTATCCAGGTGTAGGCT 59.424 52.381 13.13 0.00 44.90 4.58
5806 6968 0.391263 CCTCGTACACCCTTGCTTCC 60.391 60.000 0.00 0.00 0.00 3.46
5843 7012 1.626321 TGTCCCTTTCGCCTTCATGTA 59.374 47.619 0.00 0.00 0.00 2.29
5883 7056 1.496857 TCCCTCGTCTCCATCTCTCAT 59.503 52.381 0.00 0.00 0.00 2.90
5893 7075 0.895530 TGGTTGACATCCCTCGTCTC 59.104 55.000 0.00 0.00 34.37 3.36
5941 7124 2.484770 CCTCGTCCTTCACCAAAAGACA 60.485 50.000 0.00 0.00 0.00 3.41
5943 7126 2.037251 CTCCTCGTCCTTCACCAAAAGA 59.963 50.000 0.00 0.00 0.00 2.52
5999 7184 5.026038 AGCTCTCATTCTCTCCATTGAAG 57.974 43.478 0.00 0.00 0.00 3.02
6026 7211 1.270907 AGGAGTCGTCCAGCTCAATT 58.729 50.000 0.00 0.00 46.80 2.32
6061 7247 1.600485 GGATCCGTCACACAAAACGTT 59.400 47.619 0.00 0.00 37.19 3.99
6076 7269 1.258676 GACCTCATACTCCGGGATCC 58.741 60.000 1.92 1.92 0.00 3.36
6082 7276 1.615883 CCTCCATGACCTCATACTCCG 59.384 57.143 0.00 0.00 34.26 4.63
6088 7282 4.591321 TTTAAAGCCTCCATGACCTCAT 57.409 40.909 0.00 0.00 36.96 2.90
6097 7292 5.245977 CCTTTCATCCTTTTTAAAGCCTCCA 59.754 40.000 0.00 0.00 34.69 3.86
6151 7351 1.028868 GCCTCTCCACACCTCAATGC 61.029 60.000 0.00 0.00 0.00 3.56
6230 7439 5.601662 GATTCTTCGGTCATGGTCATCTTA 58.398 41.667 0.00 0.00 0.00 2.10
6237 7450 1.137086 CCTCGATTCTTCGGTCATGGT 59.863 52.381 0.00 0.00 45.53 3.55
6239 7452 1.212616 GCCTCGATTCTTCGGTCATG 58.787 55.000 0.00 0.00 45.53 3.07
6240 7453 0.824109 TGCCTCGATTCTTCGGTCAT 59.176 50.000 0.00 0.00 45.53 3.06
6241 7454 0.173481 CTGCCTCGATTCTTCGGTCA 59.827 55.000 0.00 0.00 45.53 4.02
6242 7455 0.456221 TCTGCCTCGATTCTTCGGTC 59.544 55.000 0.00 0.00 45.53 4.79
6243 7456 0.457851 CTCTGCCTCGATTCTTCGGT 59.542 55.000 0.00 0.00 45.53 4.69
6244 7457 0.457851 ACTCTGCCTCGATTCTTCGG 59.542 55.000 0.00 0.00 45.53 4.30
6245 7458 3.634568 ATACTCTGCCTCGATTCTTCG 57.365 47.619 0.00 0.00 46.87 3.79
6253 7466 6.570672 TTGGTACTAATATACTCTGCCTCG 57.429 41.667 0.00 0.00 0.00 4.63
6292 7505 2.744741 CAACCTTACACACACACACACA 59.255 45.455 0.00 0.00 0.00 3.72
6294 7507 3.060736 ACAACCTTACACACACACACA 57.939 42.857 0.00 0.00 0.00 3.72
6295 7508 4.186159 AGTACAACCTTACACACACACAC 58.814 43.478 0.00 0.00 0.00 3.82
6296 7509 4.475051 AGTACAACCTTACACACACACA 57.525 40.909 0.00 0.00 0.00 3.72
6298 7511 7.656948 GGTAATTAGTACAACCTTACACACACA 59.343 37.037 0.00 0.00 34.01 3.72
6300 7513 6.867816 CGGTAATTAGTACAACCTTACACACA 59.132 38.462 0.00 0.00 34.01 3.72
6361 7584 0.869454 GAGGCGCTCAATGACTCTCG 60.869 60.000 7.64 0.00 0.00 4.04
6376 7603 3.269178 CCTGTCATTCTTCTTGAGAGGC 58.731 50.000 4.21 0.00 44.65 4.70
6379 7606 2.300152 ACGCCTGTCATTCTTCTTGAGA 59.700 45.455 0.00 0.00 0.00 3.27
6433 7660 0.743688 CCATGGTCGACCTCTCAGAG 59.256 60.000 33.39 15.23 36.82 3.35
6434 7661 0.039764 ACCATGGTCGACCTCTCAGA 59.960 55.000 33.39 14.29 36.82 3.27
6435 7662 0.898320 AACCATGGTCGACCTCTCAG 59.102 55.000 33.39 19.68 36.82 3.35
6436 7663 1.348064 AAACCATGGTCGACCTCTCA 58.652 50.000 33.39 15.47 36.82 3.27
6437 7664 3.821421 ATAAACCATGGTCGACCTCTC 57.179 47.619 33.39 9.37 36.82 3.20
6438 7665 4.569719 AAATAAACCATGGTCGACCTCT 57.430 40.909 33.39 19.04 36.82 3.69
6439 7666 4.941873 AGAAAATAAACCATGGTCGACCTC 59.058 41.667 33.39 18.25 36.82 3.85
6440 7667 4.918588 AGAAAATAAACCATGGTCGACCT 58.081 39.130 33.39 17.38 36.82 3.85
6453 7685 8.879759 CATAAGCTCTCGTACCAAGAAAATAAA 58.120 33.333 0.00 0.00 0.00 1.40
6454 7686 7.494625 CCATAAGCTCTCGTACCAAGAAAATAA 59.505 37.037 0.00 0.00 0.00 1.40
6455 7687 6.984474 CCATAAGCTCTCGTACCAAGAAAATA 59.016 38.462 0.00 0.00 0.00 1.40
6537 7780 1.202463 CCTTAGGTGCATCTGGAGACG 60.202 57.143 10.55 0.00 0.00 4.18
6538 7781 2.102252 CTCCTTAGGTGCATCTGGAGAC 59.898 54.545 23.15 0.00 42.48 3.36
6540 7783 1.415659 CCTCCTTAGGTGCATCTGGAG 59.584 57.143 21.39 21.39 40.34 3.86
6542 7785 0.179034 GCCTCCTTAGGTGCATCTGG 60.179 60.000 10.55 2.89 45.64 3.86
6543 7786 0.179034 GGCCTCCTTAGGTGCATCTG 60.179 60.000 10.55 0.00 45.64 2.90
6544 7787 0.327000 AGGCCTCCTTAGGTGCATCT 60.327 55.000 4.13 4.13 45.64 2.90
6545 7788 1.424638 TAGGCCTCCTTAGGTGCATC 58.575 55.000 9.68 0.00 45.64 3.91
6546 7789 1.771255 CTTAGGCCTCCTTAGGTGCAT 59.229 52.381 9.68 11.43 45.64 3.96
6547 7790 1.204146 CTTAGGCCTCCTTAGGTGCA 58.796 55.000 9.68 0.00 45.64 4.57
6548 7791 1.497161 TCTTAGGCCTCCTTAGGTGC 58.503 55.000 9.68 2.49 45.64 5.01
6549 7792 3.579151 GGTATCTTAGGCCTCCTTAGGTG 59.421 52.174 9.68 0.00 45.64 4.00
6550 7793 3.209152 TGGTATCTTAGGCCTCCTTAGGT 59.791 47.826 9.68 1.34 45.64 3.08
6551 7794 3.858135 TGGTATCTTAGGCCTCCTTAGG 58.142 50.000 9.68 0.00 46.76 2.69
6552 7795 6.494952 TCTATGGTATCTTAGGCCTCCTTAG 58.505 44.000 9.68 14.79 34.61 2.18
6553 7796 6.479395 TCTATGGTATCTTAGGCCTCCTTA 57.521 41.667 9.68 4.90 34.61 2.69
6554 7797 5.355670 TCTATGGTATCTTAGGCCTCCTT 57.644 43.478 9.68 3.79 34.61 3.36
6555 7798 5.355670 TTCTATGGTATCTTAGGCCTCCT 57.644 43.478 9.68 0.00 37.71 3.69
6556 7799 5.485708 ACATTCTATGGTATCTTAGGCCTCC 59.514 44.000 9.68 3.04 33.60 4.30
6557 7800 6.211584 TGACATTCTATGGTATCTTAGGCCTC 59.788 42.308 9.68 0.00 33.60 4.70
6558 7801 6.084738 TGACATTCTATGGTATCTTAGGCCT 58.915 40.000 11.78 11.78 33.60 5.19
6559 7802 6.360370 TGACATTCTATGGTATCTTAGGCC 57.640 41.667 0.00 0.00 33.60 5.19
6560 7803 7.332926 CACATGACATTCTATGGTATCTTAGGC 59.667 40.741 0.00 0.00 33.60 3.93
6561 7804 7.821359 CCACATGACATTCTATGGTATCTTAGG 59.179 40.741 0.00 0.00 33.60 2.69
6562 7805 8.370940 ACCACATGACATTCTATGGTATCTTAG 58.629 37.037 0.00 0.00 38.67 2.18
6613 7858 5.981088 TGATGAGGGTAACGTACTTTGTA 57.019 39.130 0.00 0.00 37.60 2.41
6657 7903 4.695217 TCACTTGTTTGAACAGTTGTCC 57.305 40.909 0.00 0.00 40.50 4.02
6663 7909 4.219033 GCCGTTATCACTTGTTTGAACAG 58.781 43.478 0.00 0.00 40.50 3.16
6669 7915 1.533731 CCGTGCCGTTATCACTTGTTT 59.466 47.619 0.00 0.00 32.54 2.83
6705 7953 1.282157 ACCCTTGGTGCAGTCCTATTC 59.718 52.381 0.00 0.00 32.98 1.75
6766 8017 2.038557 CCTTGTATATCCCTTGGGACCG 59.961 54.545 11.04 0.00 0.00 4.79
6771 8022 6.653989 GGATATCACCTTGTATATCCCTTGG 58.346 44.000 4.83 0.00 44.42 3.61
6788 8040 4.170449 AGAGCATACACCATGGGATATCA 58.830 43.478 18.09 0.00 34.97 2.15
6831 8168 1.664321 CCCCTCCAACTACCGTCGAG 61.664 65.000 0.00 0.00 0.00 4.04
6940 8285 7.227512 CCTCCTTGTGGCTAATAGTATTGAAAG 59.772 40.741 5.61 0.00 0.00 2.62
6952 8297 1.280998 GGCTAACCTCCTTGTGGCTAA 59.719 52.381 0.00 0.00 0.00 3.09
6990 8378 9.534565 CTAATATCGAAATTTGTCCTTCTGAGA 57.465 33.333 0.00 0.00 0.00 3.27
7004 8392 6.294176 GCAGCATTGAACCCTAATATCGAAAT 60.294 38.462 0.00 0.00 0.00 2.17
7019 8407 2.097036 CCATCCTTCTGCAGCATTGAA 58.903 47.619 9.47 0.00 0.00 2.69
7106 8511 2.558359 AGCTTTTGTGGCACTATTCACC 59.442 45.455 19.83 1.54 33.29 4.02
7146 8558 0.602638 TCGCAGGTCGAATTGCTGTT 60.603 50.000 17.21 0.00 45.36 3.16
7235 8663 6.207761 TGTGACCACATTCATGTCAACATGA 61.208 40.000 19.27 19.27 46.64 3.07
7255 8683 1.610624 GGCCGATCCTTTCTTGTGTGA 60.611 52.381 0.00 0.00 0.00 3.58
7300 8741 2.040544 GGACAATCGGTGCCACCTG 61.041 63.158 12.94 6.17 35.66 4.00
7301 8742 2.063015 TTGGACAATCGGTGCCACCT 62.063 55.000 12.94 0.00 36.96 4.00
7305 8746 0.451783 GATGTTGGACAATCGGTGCC 59.548 55.000 0.00 0.00 36.96 5.01
7369 8832 1.219124 CCGTCTGCTATGCACTGGT 59.781 57.895 0.00 0.00 33.79 4.00
7409 8872 2.222027 CCCCGACTATCTTGGCATTTC 58.778 52.381 0.00 0.00 0.00 2.17
7410 8873 1.564348 ACCCCGACTATCTTGGCATTT 59.436 47.619 0.00 0.00 0.00 2.32
7424 8887 3.891977 CAGATCTCTCTTTATGACCCCGA 59.108 47.826 0.00 0.00 0.00 5.14
7426 8889 5.221621 CCTTCAGATCTCTCTTTATGACCCC 60.222 48.000 0.00 0.00 0.00 4.95
7430 8893 6.323482 CCAGTCCTTCAGATCTCTCTTTATGA 59.677 42.308 0.00 0.00 0.00 2.15
7496 8991 3.808728 TGGCACATGGATAGCTAACTTC 58.191 45.455 0.00 0.00 0.00 3.01
7497 8992 3.455910 TCTGGCACATGGATAGCTAACTT 59.544 43.478 0.00 0.00 38.20 2.66
7498 8993 3.041211 TCTGGCACATGGATAGCTAACT 58.959 45.455 0.00 0.00 38.20 2.24
7499 8994 3.475566 TCTGGCACATGGATAGCTAAC 57.524 47.619 0.00 0.00 38.20 2.34
7588 9120 9.928618 TCCACATTTGGTTATATATTTTCCAGA 57.071 29.630 0.00 0.00 44.35 3.86
7591 9123 9.476202 GCTTCCACATTTGGTTATATATTTTCC 57.524 33.333 0.00 0.00 44.35 3.13
7592 9124 9.476202 GGCTTCCACATTTGGTTATATATTTTC 57.524 33.333 0.00 0.00 44.35 2.29
7594 9126 7.566879 TGGGCTTCCACATTTGGTTATATATTT 59.433 33.333 0.00 0.00 44.35 1.40
7595 9127 7.072562 TGGGCTTCCACATTTGGTTATATATT 58.927 34.615 0.00 0.00 44.35 1.28
7596 9128 6.619464 TGGGCTTCCACATTTGGTTATATAT 58.381 36.000 0.00 0.00 44.35 0.86
7597 9129 6.019656 TGGGCTTCCACATTTGGTTATATA 57.980 37.500 0.00 0.00 44.35 0.86
7618 9150 7.734924 TCAAATAATAATGCTGCTACTCTGG 57.265 36.000 0.00 0.00 0.00 3.86
7624 9156 7.059788 TGTCCCTTCAAATAATAATGCTGCTA 58.940 34.615 0.00 0.00 0.00 3.49
7835 9445 4.021016 ACATTAGCTTCAGTCTTCCTTCGT 60.021 41.667 0.00 0.00 0.00 3.85
7893 9503 4.934797 TCCTCCTGTTGATCAAAGGATT 57.065 40.909 26.13 0.00 39.36 3.01
7894 9504 4.290722 AGTTCCTCCTGTTGATCAAAGGAT 59.709 41.667 26.13 13.57 39.36 3.24
7982 9592 9.667989 GAAATTTCAAAAATTTGCTGCATTACT 57.332 25.926 13.40 0.00 38.05 2.24
7991 9601 9.771915 TTGACAGAAGAAATTTCAAAAATTTGC 57.228 25.926 19.99 7.00 38.05 3.68
7996 9606 8.317679 TCCCTTTGACAGAAGAAATTTCAAAAA 58.682 29.630 19.99 8.28 36.13 1.94
8001 9611 5.452777 CGTCCCTTTGACAGAAGAAATTTC 58.547 41.667 10.33 10.33 44.71 2.17
8057 9667 1.003718 GGTAGGGCACGCAACTTCT 60.004 57.895 0.00 0.00 0.00 2.85
8207 9817 3.307269 CTGTTTCAGAGCCAGAGATTGGA 60.307 47.826 0.00 0.00 40.79 3.53
8234 9844 0.963856 CATGCTGGCACACTCCACAT 60.964 55.000 0.00 0.00 32.19 3.21
8320 9934 7.037153 TGGTATAGAACTGGGGAAACAAATAGT 60.037 37.037 0.00 0.00 0.00 2.12
8433 10047 3.576078 ACTTCCCATGTTCAGAACACA 57.424 42.857 18.49 0.00 45.50 3.72
8441 10057 2.438868 GGCAACAACTTCCCATGTTC 57.561 50.000 0.00 0.00 37.66 3.18
8509 10126 5.633601 TCAGATTAGAAGTACACGCTGTTTG 59.366 40.000 0.00 0.00 0.00 2.93
8624 10243 7.986085 ATAGTTGTGTAGATTGCTTCAAAGT 57.014 32.000 0.00 0.00 0.00 2.66
8648 10268 7.169813 CACGAGCATGCAGTTCTTTATCTTATA 59.830 37.037 21.98 0.00 0.00 0.98
8656 10276 1.882912 TCACGAGCATGCAGTTCTTT 58.117 45.000 21.98 0.00 0.00 2.52
8676 10296 6.871492 AGTCAACACGTCATATTCATGTGTAA 59.129 34.615 9.04 1.10 42.08 2.41
8710 10332 3.576078 TTCTGAGACAGGAAGCCAAAA 57.424 42.857 0.00 0.00 31.51 2.44
8744 10366 1.812235 ATCAAGTGCATCACGCTGAA 58.188 45.000 0.00 0.00 43.06 3.02
8842 10466 8.465999 AGATAATTTCGGTCACATGCATTTTAA 58.534 29.630 0.00 0.00 0.00 1.52
8894 10528 1.001815 ACGCGGTTTGGTCTGATTTTG 60.002 47.619 12.47 0.00 0.00 2.44
8936 10573 1.248486 TGACTTGACTGTCGCTAGCT 58.752 50.000 13.93 0.00 39.64 3.32
8976 10631 5.581874 TGCAAAGCAAAAGGAAAGAAGAAAG 59.418 36.000 0.00 0.00 34.76 2.62
8979 10637 4.081752 TGTGCAAAGCAAAAGGAAAGAAGA 60.082 37.500 0.00 0.00 41.47 2.87
8987 10645 3.981211 AGTATGTGTGCAAAGCAAAAGG 58.019 40.909 0.00 0.00 41.47 3.11
8998 10656 1.066143 ACTGCCCACTAGTATGTGTGC 60.066 52.381 0.00 0.00 40.74 4.57
8999 10657 2.621338 CACTGCCCACTAGTATGTGTG 58.379 52.381 0.00 0.00 36.30 3.82
9007 10665 2.045926 GGTGCCACTGCCCACTAG 60.046 66.667 0.00 0.00 36.33 2.57
9027 10685 7.036996 TCTGAGATGAATAGACTACTTGCTG 57.963 40.000 0.00 0.00 0.00 4.41
9034 10692 9.639563 AACTTCAGATCTGAGATGAATAGACTA 57.360 33.333 23.92 5.25 41.13 2.59
9063 10721 1.305381 AGAACACCGGGAGAGGGAG 60.305 63.158 6.32 0.00 35.02 4.30
9091 10751 1.499049 GTCCGCGATTTAGGATCCAC 58.501 55.000 15.82 0.00 38.97 4.02
9099 10759 3.824469 TCCGGCGTCCGCGATTTA 61.824 61.111 8.23 0.00 46.86 1.40
9161 10821 7.633018 AGGAAGCTGTATCTGGGAATAATTA 57.367 36.000 0.00 0.00 0.00 1.40
9169 10829 2.636830 CACAAGGAAGCTGTATCTGGG 58.363 52.381 0.00 0.00 0.00 4.45
9191 10851 9.331282 GTTGCTAAACAATATCAGACTAAGGAT 57.669 33.333 0.00 0.00 41.27 3.24
9193 10853 8.723942 AGTTGCTAAACAATATCAGACTAAGG 57.276 34.615 0.00 0.00 41.27 2.69
9198 10858 7.617041 AGGAAGTTGCTAAACAATATCAGAC 57.383 36.000 0.00 0.00 41.27 3.51
9229 10891 7.042389 TGCGATCGATTACAACTTGCAATTATA 60.042 33.333 21.57 0.00 0.00 0.98
9230 10892 6.136071 GCGATCGATTACAACTTGCAATTAT 58.864 36.000 21.57 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.