Multiple sequence alignment - TraesCS2B01G222700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G222700 chr2B 100.000 5426 0 0 1 5426 212313372 212307947 0.000000e+00 10021.0
1 TraesCS2B01G222700 chr2D 93.280 3140 114 46 1668 4760 155415129 155412040 0.000000e+00 4540.0
2 TraesCS2B01G222700 chr2D 88.905 1352 60 34 146 1453 155416653 155415348 0.000000e+00 1583.0
3 TraesCS2B01G222700 chr2D 93.191 235 8 4 5056 5282 155411520 155411286 6.730000e-89 339.0
4 TraesCS2B01G222700 chr2D 93.458 107 6 1 5279 5385 155411128 155411023 2.020000e-34 158.0
5 TraesCS2B01G222700 chr2D 93.396 106 7 0 4881 4986 155411982 155411877 2.020000e-34 158.0
6 TraesCS2B01G222700 chr2A 90.279 3086 148 63 1800 4815 144946759 144949762 0.000000e+00 3897.0
7 TraesCS2B01G222700 chr2A 87.296 1346 66 37 450 1723 144945420 144946732 0.000000e+00 1441.0
8 TraesCS2B01G222700 chr2A 88.652 423 25 6 4881 5286 144949787 144950203 1.360000e-135 494.0
9 TraesCS2B01G222700 chr2A 87.440 207 15 3 186 382 144944993 144945198 1.520000e-55 228.0
10 TraesCS2B01G222700 chr2A 90.385 52 2 1 1757 1805 144946728 144946779 1.260000e-06 65.8
11 TraesCS2B01G222700 chr5D 88.451 381 43 1 4043 4423 509569843 509570222 4.950000e-125 459.0
12 TraesCS2B01G222700 chr5A 88.391 379 43 1 4045 4423 637058774 637059151 6.410000e-124 455.0
13 TraesCS2B01G222700 chr5B 88.329 377 43 1 4047 4423 640403584 640403959 8.290000e-123 451.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G222700 chr2B 212307947 212313372 5425 True 10021.00 10021 100.0000 1 5426 1 chr2B.!!$R1 5425
1 TraesCS2B01G222700 chr2D 155411023 155416653 5630 True 1355.60 4540 92.4460 146 5385 5 chr2D.!!$R1 5239
2 TraesCS2B01G222700 chr2A 144944993 144950203 5210 False 1225.16 3897 88.8104 186 5286 5 chr2A.!!$F1 5100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 481 0.034186 TAGGAGAAACGGGTAGGCGA 60.034 55.0 0.00 0.0 0.00 5.54 F
1536 1812 0.523519 GAGGGAAAGGCTTGCTTTCG 59.476 55.0 4.95 0.0 40.58 3.46 F
2025 2330 0.107831 TCACAGTTGGGCTACACCAC 59.892 55.0 0.00 0.0 41.03 4.16 F
2029 2334 0.108585 AGTTGGGCTACACCACACAG 59.891 55.0 0.00 0.0 41.03 3.66 F
2145 2456 0.250234 CAAGGTCGCATCCCAGAAGA 59.750 55.0 0.00 0.0 0.00 2.87 F
2532 2850 0.319900 GCAACGAGTTCAGCCTCTCA 60.320 55.0 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2327 0.248843 GGAGAAGAGAGGCTGTGTGG 59.751 60.000 0.00 0.00 0.00 4.17 R
3165 3509 0.824109 TCAGTACTCAGGCCATTCCG 59.176 55.000 5.01 0.00 40.77 4.30 R
4005 4376 0.158928 GCGCGCGCATAGTTAGTTAG 59.841 55.000 46.11 10.98 41.49 2.34 R
4057 4436 2.987547 CAGCCACCAGTTGCCCTG 60.988 66.667 0.00 0.00 41.15 4.45 R
4404 4783 2.586648 ATGGACAGTTGGGGTTCTTC 57.413 50.000 0.00 0.00 0.00 2.87 R
4790 5201 0.035056 GAGGTTGGTGACATGGGAGG 60.035 60.000 0.00 0.00 42.32 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.477975 CCGCTCCGACGACTGGAC 62.478 72.222 0.00 0.00 34.06 4.02
56 57 4.477975 CGCTCCGACGACTGGACC 62.478 72.222 0.00 0.00 34.06 4.46
57 58 3.063084 GCTCCGACGACTGGACCT 61.063 66.667 0.00 0.00 0.00 3.85
58 59 3.053849 GCTCCGACGACTGGACCTC 62.054 68.421 0.00 0.00 0.00 3.85
59 60 2.360852 TCCGACGACTGGACCTCC 60.361 66.667 0.00 0.00 0.00 4.30
60 61 2.675423 CCGACGACTGGACCTCCA 60.675 66.667 0.00 0.00 45.30 3.86
61 62 2.052690 CCGACGACTGGACCTCCAT 61.053 63.158 0.00 0.00 46.46 3.41
62 63 1.433879 CGACGACTGGACCTCCATC 59.566 63.158 0.00 0.00 46.46 3.51
63 64 1.817209 GACGACTGGACCTCCATCC 59.183 63.158 0.00 0.00 46.46 3.51
64 65 2.005960 GACGACTGGACCTCCATCCG 62.006 65.000 11.66 11.66 46.46 4.18
65 66 1.753078 CGACTGGACCTCCATCCGA 60.753 63.158 8.88 0.00 46.46 4.55
66 67 1.817209 GACTGGACCTCCATCCGAC 59.183 63.158 0.00 0.00 46.46 4.79
67 68 0.970937 GACTGGACCTCCATCCGACA 60.971 60.000 0.00 0.00 46.46 4.35
68 69 0.544357 ACTGGACCTCCATCCGACAA 60.544 55.000 0.00 0.00 46.46 3.18
69 70 0.176680 CTGGACCTCCATCCGACAAG 59.823 60.000 0.00 0.00 46.46 3.16
70 71 1.153349 GGACCTCCATCCGACAAGC 60.153 63.158 0.00 0.00 35.64 4.01
71 72 1.153349 GACCTCCATCCGACAAGCC 60.153 63.158 0.00 0.00 0.00 4.35
72 73 2.190578 CCTCCATCCGACAAGCCC 59.809 66.667 0.00 0.00 0.00 5.19
73 74 2.202932 CTCCATCCGACAAGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
74 75 3.000819 TCCATCCGACAAGCCCGT 61.001 61.111 0.00 0.00 0.00 5.28
75 76 2.046314 CCATCCGACAAGCCCGTT 60.046 61.111 0.00 0.00 0.00 4.44
76 77 2.398554 CCATCCGACAAGCCCGTTG 61.399 63.158 0.00 0.00 42.48 4.10
77 78 2.046314 ATCCGACAAGCCCGTTGG 60.046 61.111 3.37 3.37 40.90 3.77
87 88 4.413928 CCCGTTGGCAAAGGATGA 57.586 55.556 30.09 0.00 0.00 2.92
88 89 2.886382 CCCGTTGGCAAAGGATGAT 58.114 52.632 30.09 0.00 0.00 2.45
89 90 2.051334 CCCGTTGGCAAAGGATGATA 57.949 50.000 30.09 0.00 0.00 2.15
90 91 1.676006 CCCGTTGGCAAAGGATGATAC 59.324 52.381 30.09 1.85 0.00 2.24
91 92 1.676006 CCGTTGGCAAAGGATGATACC 59.324 52.381 25.41 0.00 0.00 2.73
92 93 1.330521 CGTTGGCAAAGGATGATACCG 59.669 52.381 0.00 0.00 34.73 4.02
93 94 2.639065 GTTGGCAAAGGATGATACCGA 58.361 47.619 0.00 0.00 34.73 4.69
94 95 2.614057 GTTGGCAAAGGATGATACCGAG 59.386 50.000 0.00 0.00 34.73 4.63
95 96 1.140852 TGGCAAAGGATGATACCGAGG 59.859 52.381 0.00 0.00 34.73 4.63
96 97 1.230324 GCAAAGGATGATACCGAGGC 58.770 55.000 0.00 0.00 34.73 4.70
97 98 1.202698 GCAAAGGATGATACCGAGGCT 60.203 52.381 0.00 0.00 34.73 4.58
98 99 2.746472 GCAAAGGATGATACCGAGGCTT 60.746 50.000 0.00 0.00 34.73 4.35
99 100 3.134458 CAAAGGATGATACCGAGGCTTC 58.866 50.000 0.00 0.00 34.73 3.86
100 101 2.390225 AGGATGATACCGAGGCTTCT 57.610 50.000 0.00 0.00 34.73 2.85
101 102 3.527507 AGGATGATACCGAGGCTTCTA 57.472 47.619 0.00 0.00 34.73 2.10
102 103 3.158676 AGGATGATACCGAGGCTTCTAC 58.841 50.000 0.00 0.00 34.73 2.59
103 104 2.095161 GGATGATACCGAGGCTTCTACG 60.095 54.545 0.00 0.00 0.00 3.51
104 105 0.666913 TGATACCGAGGCTTCTACGC 59.333 55.000 0.00 0.00 0.00 4.42
117 118 5.547181 GCTTCTACGCCATTCTTAAAAGT 57.453 39.130 0.00 0.00 0.00 2.66
118 119 5.939457 GCTTCTACGCCATTCTTAAAAGTT 58.061 37.500 0.00 0.00 0.00 2.66
119 120 6.379386 GCTTCTACGCCATTCTTAAAAGTTT 58.621 36.000 0.00 0.00 0.00 2.66
120 121 6.305638 GCTTCTACGCCATTCTTAAAAGTTTG 59.694 38.462 0.00 0.00 0.00 2.93
121 122 7.499321 TTCTACGCCATTCTTAAAAGTTTGA 57.501 32.000 0.00 0.00 0.00 2.69
122 123 7.499321 TCTACGCCATTCTTAAAAGTTTGAA 57.501 32.000 0.00 0.00 0.00 2.69
123 124 8.106247 TCTACGCCATTCTTAAAAGTTTGAAT 57.894 30.769 0.00 0.00 0.00 2.57
124 125 8.020819 TCTACGCCATTCTTAAAAGTTTGAATG 58.979 33.333 15.35 15.35 42.93 2.67
131 132 9.437045 CATTCTTAAAAGTTTGAATGGTTTTGC 57.563 29.630 14.82 0.00 40.92 3.68
132 133 7.227992 TCTTAAAAGTTTGAATGGTTTTGCG 57.772 32.000 0.00 0.00 0.00 4.85
133 134 4.873768 AAAAGTTTGAATGGTTTTGCGG 57.126 36.364 0.00 0.00 0.00 5.69
134 135 2.524569 AGTTTGAATGGTTTTGCGGG 57.475 45.000 0.00 0.00 0.00 6.13
135 136 1.069978 AGTTTGAATGGTTTTGCGGGG 59.930 47.619 0.00 0.00 0.00 5.73
136 137 0.394565 TTTGAATGGTTTTGCGGGGG 59.605 50.000 0.00 0.00 0.00 5.40
137 138 0.470080 TTGAATGGTTTTGCGGGGGA 60.470 50.000 0.00 0.00 0.00 4.81
138 139 0.470080 TGAATGGTTTTGCGGGGGAA 60.470 50.000 0.00 0.00 0.00 3.97
139 140 0.901827 GAATGGTTTTGCGGGGGAAT 59.098 50.000 0.00 0.00 0.00 3.01
140 141 0.901827 AATGGTTTTGCGGGGGAATC 59.098 50.000 0.00 0.00 0.00 2.52
141 142 0.041090 ATGGTTTTGCGGGGGAATCT 59.959 50.000 0.00 0.00 0.00 2.40
142 143 0.178947 TGGTTTTGCGGGGGAATCTT 60.179 50.000 0.00 0.00 0.00 2.40
143 144 1.075698 TGGTTTTGCGGGGGAATCTTA 59.924 47.619 0.00 0.00 0.00 2.10
144 145 2.172679 GGTTTTGCGGGGGAATCTTAA 58.827 47.619 0.00 0.00 0.00 1.85
184 185 6.364701 AGGCTATTGTCATATTAACCTGCAA 58.635 36.000 0.00 0.00 0.00 4.08
256 269 8.824159 ATAGATTGATCTTGATACAAAGACCG 57.176 34.615 0.00 0.00 38.95 4.79
276 289 5.745227 ACCGTATCATCCTTTTTGACTGAT 58.255 37.500 0.00 0.00 0.00 2.90
316 329 9.276590 CCTAATCTTCATCTGTAATGTGCATTA 57.723 33.333 0.00 0.90 32.50 1.90
337 350 9.069078 GCATTAAAATCGGTAACCTTTTCTAAC 57.931 33.333 0.00 0.00 32.21 2.34
389 433 1.682854 ACATATCCAATTTGCGCCCTG 59.317 47.619 4.18 0.00 0.00 4.45
390 434 1.000060 CATATCCAATTTGCGCCCTGG 60.000 52.381 4.18 6.37 0.00 4.45
397 441 0.251341 ATTTGCGCCCTGGTCTTCTT 60.251 50.000 4.18 0.00 0.00 2.52
398 442 0.889186 TTTGCGCCCTGGTCTTCTTC 60.889 55.000 4.18 0.00 0.00 2.87
399 443 2.050836 TTGCGCCCTGGTCTTCTTCA 62.051 55.000 4.18 0.00 0.00 3.02
435 479 0.101939 CGTAGGAGAAACGGGTAGGC 59.898 60.000 0.00 0.00 36.71 3.93
436 480 0.101939 GTAGGAGAAACGGGTAGGCG 59.898 60.000 0.00 0.00 0.00 5.52
437 481 0.034186 TAGGAGAAACGGGTAGGCGA 60.034 55.000 0.00 0.00 0.00 5.54
438 482 1.141234 GGAGAAACGGGTAGGCGAG 59.859 63.158 0.00 0.00 0.00 5.03
439 483 1.141234 GAGAAACGGGTAGGCGAGG 59.859 63.158 0.00 0.00 0.00 4.63
440 484 1.304713 AGAAACGGGTAGGCGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
441 485 1.153686 GAAACGGGTAGGCGAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
442 486 2.879039 GAAACGGGTAGGCGAGGACG 62.879 65.000 0.00 0.00 42.93 4.79
445 489 2.521224 GGGTAGGCGAGGACGGAT 60.521 66.667 0.00 0.00 40.15 4.18
446 490 2.728817 GGTAGGCGAGGACGGATG 59.271 66.667 0.00 0.00 40.15 3.51
447 491 2.027751 GTAGGCGAGGACGGATGC 59.972 66.667 0.00 0.00 40.15 3.91
453 497 1.226802 CGAGGACGGATGCAGAGTG 60.227 63.158 0.00 0.00 35.72 3.51
503 698 1.064825 CAACCACTGTACCCTTCCCT 58.935 55.000 0.00 0.00 0.00 4.20
504 699 1.064825 AACCACTGTACCCTTCCCTG 58.935 55.000 0.00 0.00 0.00 4.45
743 951 0.616111 GTCTGCTCCTCCTCCTTCCA 60.616 60.000 0.00 0.00 0.00 3.53
902 1125 1.832167 GCGCCATCTCTCTCCTCCT 60.832 63.158 0.00 0.00 0.00 3.69
903 1126 2.040330 CGCCATCTCTCTCCTCCTG 58.960 63.158 0.00 0.00 0.00 3.86
905 1128 0.760189 GCCATCTCTCTCCTCCTGCT 60.760 60.000 0.00 0.00 0.00 4.24
906 1129 1.792115 CCATCTCTCTCCTCCTGCTT 58.208 55.000 0.00 0.00 0.00 3.91
917 1155 2.357517 CCTGCTTGCCTCGTCGTT 60.358 61.111 0.00 0.00 0.00 3.85
949 1187 2.508887 GAGCAGAGCAGAGCACGG 60.509 66.667 0.00 0.00 0.00 4.94
951 1189 4.385405 GCAGAGCAGAGCACGGGT 62.385 66.667 0.00 0.00 0.00 5.28
953 1191 2.601666 AGAGCAGAGCACGGGTGA 60.602 61.111 2.38 0.00 0.00 4.02
1084 1341 4.508128 CGGCGGCGCTTCTCCTAA 62.508 66.667 32.30 0.00 0.00 2.69
1086 1343 1.366366 GGCGGCGCTTCTCCTAATA 59.634 57.895 32.30 0.00 0.00 0.98
1244 1501 1.695989 GGTACATCCATCCACCCCTCT 60.696 57.143 0.00 0.00 35.97 3.69
1343 1607 6.459670 TCAAGTGAATGAATGAATCCATGG 57.540 37.500 4.97 4.97 32.36 3.66
1361 1625 4.319177 CATGGAAAGAAAAGAGAGACGGT 58.681 43.478 0.00 0.00 0.00 4.83
1477 1745 2.156917 CTTCTTGCTCAAGTGCATCCA 58.843 47.619 9.20 0.00 42.96 3.41
1479 1747 2.089201 TCTTGCTCAAGTGCATCCATG 58.911 47.619 9.20 0.00 42.96 3.66
1532 1808 2.352805 CGGAGGGAAAGGCTTGCT 59.647 61.111 4.95 0.00 0.00 3.91
1533 1809 1.303643 CGGAGGGAAAGGCTTGCTT 60.304 57.895 4.95 0.00 0.00 3.91
1534 1810 0.895559 CGGAGGGAAAGGCTTGCTTT 60.896 55.000 4.95 0.00 0.00 3.51
1535 1811 0.891373 GGAGGGAAAGGCTTGCTTTC 59.109 55.000 4.95 3.29 39.38 2.62
1536 1812 0.523519 GAGGGAAAGGCTTGCTTTCG 59.476 55.000 4.95 0.00 40.58 3.46
1537 1813 0.895559 AGGGAAAGGCTTGCTTTCGG 60.896 55.000 4.95 0.00 40.58 4.30
1538 1814 1.586541 GGAAAGGCTTGCTTTCGGG 59.413 57.895 4.95 0.00 40.58 5.14
1539 1815 1.586541 GAAAGGCTTGCTTTCGGGG 59.413 57.895 0.00 0.00 32.23 5.73
1540 1816 1.877576 GAAAGGCTTGCTTTCGGGGG 61.878 60.000 0.00 0.00 32.23 5.40
1574 1850 1.515521 CCCGTGCTTCTTGGGTTCAC 61.516 60.000 0.00 0.00 38.18 3.18
1625 1905 4.002906 TGCTCGCTTTCCTTTCTTTAGA 57.997 40.909 0.00 0.00 0.00 2.10
1655 1940 1.238439 GCAGCAGTCACTTTTAGGCA 58.762 50.000 0.00 0.00 0.00 4.75
1664 1949 7.123247 AGCAGTCACTTTTAGGCAAAATCATAT 59.877 33.333 0.00 0.00 33.27 1.78
1666 1951 9.643693 CAGTCACTTTTAGGCAAAATCATATTT 57.356 29.630 0.00 0.00 33.27 1.40
1714 2008 6.016693 TCAGTTCCTTCGAAATGCACAATTTA 60.017 34.615 0.00 0.00 42.46 1.40
1739 2034 4.322801 GGGCAGTCTCTTACATGTACTGTT 60.323 45.833 21.11 0.00 39.74 3.16
1740 2035 4.865365 GGCAGTCTCTTACATGTACTGTTC 59.135 45.833 21.11 13.13 39.74 3.18
1741 2036 5.336849 GGCAGTCTCTTACATGTACTGTTCT 60.337 44.000 21.11 9.37 39.74 3.01
1742 2037 5.802956 GCAGTCTCTTACATGTACTGTTCTC 59.197 44.000 21.11 6.48 39.74 2.87
1767 2062 5.830912 TGTTTTTATTCAGCTGTTGTCTGG 58.169 37.500 14.67 0.00 32.63 3.86
1834 2132 1.745087 ACTGAATTTAGCACCATGCCG 59.255 47.619 0.00 0.00 46.52 5.69
1941 2246 3.406200 AGCCAGCCTGCCTTCGAT 61.406 61.111 0.00 0.00 0.00 3.59
1994 2299 0.614415 CCTCTCTCTCCAGCACCACT 60.614 60.000 0.00 0.00 0.00 4.00
2012 2317 2.624838 CACTGATGCCCTTTTTCACAGT 59.375 45.455 0.00 0.00 37.56 3.55
2013 2318 3.068590 CACTGATGCCCTTTTTCACAGTT 59.931 43.478 0.00 0.00 35.43 3.16
2014 2319 3.068590 ACTGATGCCCTTTTTCACAGTTG 59.931 43.478 0.00 0.00 34.21 3.16
2015 2320 2.364970 TGATGCCCTTTTTCACAGTTGG 59.635 45.455 0.00 0.00 0.00 3.77
2016 2321 1.118838 TGCCCTTTTTCACAGTTGGG 58.881 50.000 0.00 0.00 37.76 4.12
2017 2322 3.986970 CCCTTTTTCACAGTTGGGC 57.013 52.632 0.00 0.00 0.00 5.36
2018 2323 1.413118 CCCTTTTTCACAGTTGGGCT 58.587 50.000 0.00 0.00 0.00 5.19
2019 2324 2.593026 CCCTTTTTCACAGTTGGGCTA 58.407 47.619 0.00 0.00 0.00 3.93
2020 2325 2.296190 CCCTTTTTCACAGTTGGGCTAC 59.704 50.000 0.00 0.00 0.00 3.58
2021 2326 2.955660 CCTTTTTCACAGTTGGGCTACA 59.044 45.455 0.00 0.00 0.00 2.74
2022 2327 3.243401 CCTTTTTCACAGTTGGGCTACAC 60.243 47.826 0.00 0.00 0.00 2.90
2023 2328 1.975660 TTTCACAGTTGGGCTACACC 58.024 50.000 0.00 0.00 37.93 4.16
2024 2329 0.840617 TTCACAGTTGGGCTACACCA 59.159 50.000 0.00 0.00 42.05 4.17
2025 2330 0.107831 TCACAGTTGGGCTACACCAC 59.892 55.000 0.00 0.00 41.03 4.16
2026 2331 0.179032 CACAGTTGGGCTACACCACA 60.179 55.000 0.00 0.00 41.03 4.17
2027 2332 0.179029 ACAGTTGGGCTACACCACAC 60.179 55.000 0.00 0.00 41.03 3.82
2028 2333 0.179032 CAGTTGGGCTACACCACACA 60.179 55.000 0.00 0.00 41.03 3.72
2029 2334 0.108585 AGTTGGGCTACACCACACAG 59.891 55.000 0.00 0.00 41.03 3.66
2030 2335 1.228124 TTGGGCTACACCACACAGC 60.228 57.895 0.00 0.00 41.03 4.40
2033 2338 4.285851 GCTACACCACACAGCCTC 57.714 61.111 0.00 0.00 0.00 4.70
2034 2339 1.674057 GCTACACCACACAGCCTCT 59.326 57.895 0.00 0.00 0.00 3.69
2049 2354 0.545309 CCTCTCTTCTCCCCCACACA 60.545 60.000 0.00 0.00 0.00 3.72
2051 2356 1.209019 CTCTCTTCTCCCCCACACATG 59.791 57.143 0.00 0.00 0.00 3.21
2057 2362 3.059051 TCTCCCCCACACATGATGATA 57.941 47.619 0.00 0.00 0.00 2.15
2058 2363 2.705658 TCTCCCCCACACATGATGATAC 59.294 50.000 0.00 0.00 0.00 2.24
2059 2364 2.707791 CTCCCCCACACATGATGATACT 59.292 50.000 0.00 0.00 0.00 2.12
2060 2365 2.705658 TCCCCCACACATGATGATACTC 59.294 50.000 0.00 0.00 0.00 2.59
2061 2366 2.439135 CCCCCACACATGATGATACTCA 59.561 50.000 0.00 0.00 0.00 3.41
2062 2367 3.117926 CCCCCACACATGATGATACTCAA 60.118 47.826 0.00 0.00 0.00 3.02
2064 2369 4.517832 CCCCACACATGATGATACTCAATG 59.482 45.833 0.00 0.00 0.00 2.82
2066 2371 5.824097 CCCACACATGATGATACTCAATGAA 59.176 40.000 0.00 0.00 0.00 2.57
2070 2381 7.012989 CACACATGATGATACTCAATGAATGGT 59.987 37.037 0.00 0.00 0.00 3.55
2073 2384 5.687780 TGATGATACTCAATGAATGGTGCT 58.312 37.500 0.00 0.00 0.00 4.40
2076 2387 1.913778 ACTCAATGAATGGTGCTGCA 58.086 45.000 0.00 0.00 0.00 4.41
2145 2456 0.250234 CAAGGTCGCATCCCAGAAGA 59.750 55.000 0.00 0.00 0.00 2.87
2155 2469 3.557898 GCATCCCAGAAGAACACTCAGAA 60.558 47.826 0.00 0.00 0.00 3.02
2161 2475 5.709164 CCCAGAAGAACACTCAGAAAATCAT 59.291 40.000 0.00 0.00 0.00 2.45
2174 2488 5.188163 TCAGAAAATCATCCAAATGTGGCAT 59.812 36.000 0.00 0.00 45.54 4.40
2184 2498 0.608856 AATGTGGCATCAGAACGGCA 60.609 50.000 0.00 0.00 34.99 5.69
2208 2522 2.290260 TGCCAAGAGAACACCATACCAG 60.290 50.000 0.00 0.00 0.00 4.00
2231 2545 1.367848 AGGAGGACCAAGAAGGAGGAT 59.632 52.381 0.00 0.00 41.22 3.24
2279 2593 0.957395 ATGGCAAGAAGACGCACCTG 60.957 55.000 0.00 0.00 0.00 4.00
2327 2641 2.307768 CCTGCCATGCTCAATGAGAAT 58.692 47.619 15.38 6.10 38.72 2.40
2344 2658 1.788518 AATGGCCACCAGGTACAGCA 61.789 55.000 8.16 0.00 36.75 4.41
2532 2850 0.319900 GCAACGAGTTCAGCCTCTCA 60.320 55.000 0.00 0.00 0.00 3.27
2571 2889 0.895559 GTTCCTTTGGGCAGGACCTG 60.896 60.000 17.83 17.83 43.12 4.00
2801 3128 5.441709 TGCAATAATGATATGTGCACTGG 57.558 39.130 19.41 0.00 40.14 4.00
2825 3155 1.145571 AGGACCCTTGCACTTTGGTA 58.854 50.000 0.00 0.00 0.00 3.25
2837 3167 4.182339 GCACTTTGGTAGTAGTAGAAGCC 58.818 47.826 0.00 0.00 34.56 4.35
2843 3173 4.931914 TGGTAGTAGTAGAAGCCAGACTT 58.068 43.478 0.00 0.00 42.98 3.01
2963 3305 4.637483 TGCTGGATTAATTAAGCTGTGC 57.363 40.909 18.63 13.64 36.60 4.57
2964 3306 3.381272 TGCTGGATTAATTAAGCTGTGCC 59.619 43.478 18.63 3.96 36.60 5.01
2965 3307 3.243535 GCTGGATTAATTAAGCTGTGCCC 60.244 47.826 12.84 0.00 32.82 5.36
2968 3310 3.319122 GGATTAATTAAGCTGTGCCCCTG 59.681 47.826 12.84 0.00 0.00 4.45
2971 3313 2.420058 ATTAAGCTGTGCCCCTGTAC 57.580 50.000 0.00 0.00 0.00 2.90
3042 3384 2.437281 CAGCCCAGACTTGTATGGAGAT 59.563 50.000 15.15 2.56 39.02 2.75
3101 3444 7.348815 AGATAACATCACATTCCTTCCAATCA 58.651 34.615 0.00 0.00 0.00 2.57
3165 3509 9.959749 TTTCAAAAACACACATACCTATCTTTC 57.040 29.630 0.00 0.00 0.00 2.62
3209 3554 9.463443 GACTTTTGTATTGCTGTTTTGAATACT 57.537 29.630 0.00 0.00 34.82 2.12
3614 3970 7.038154 TGCTTGCTAGTTTACACTTGAAAAT 57.962 32.000 0.00 0.00 34.06 1.82
3651 4007 2.740981 CTGTGTTCATGCTTCTCCTGTC 59.259 50.000 0.00 0.00 0.00 3.51
3707 4066 2.416747 TGAAACATGTCTCTTCTGCCG 58.583 47.619 0.00 0.00 0.00 5.69
3794 4154 6.647481 CCATGTGCCATTATGTTATCATTTGG 59.353 38.462 9.52 9.52 38.27 3.28
3909 4278 5.829391 TGCATTACAATGGATGAGCACTTAT 59.171 36.000 4.23 0.00 36.90 1.73
3910 4279 6.997476 TGCATTACAATGGATGAGCACTTATA 59.003 34.615 4.23 0.00 36.90 0.98
3911 4280 7.666804 TGCATTACAATGGATGAGCACTTATAT 59.333 33.333 4.23 0.00 36.90 0.86
3912 4281 8.517878 GCATTACAATGGATGAGCACTTATATT 58.482 33.333 4.23 0.00 36.90 1.28
3915 4284 7.678947 ACAATGGATGAGCACTTATATTAGC 57.321 36.000 0.00 0.00 0.00 3.09
3916 4285 7.456725 ACAATGGATGAGCACTTATATTAGCT 58.543 34.615 0.00 0.00 40.60 3.32
3917 4286 7.941238 ACAATGGATGAGCACTTATATTAGCTT 59.059 33.333 0.00 0.00 37.48 3.74
3918 4287 8.790718 CAATGGATGAGCACTTATATTAGCTTT 58.209 33.333 0.00 0.00 37.48 3.51
3962 4333 7.129457 ACTATGATGATAGCACAGAAAAGGA 57.871 36.000 0.00 0.00 35.79 3.36
4002 4373 2.762887 TCCTGATCATGATCCTATCCGC 59.237 50.000 28.61 6.53 37.02 5.54
4003 4374 2.765135 CCTGATCATGATCCTATCCGCT 59.235 50.000 28.61 0.00 37.02 5.52
4004 4375 3.956848 CCTGATCATGATCCTATCCGCTA 59.043 47.826 28.61 9.34 37.02 4.26
4005 4376 4.202101 CCTGATCATGATCCTATCCGCTAC 60.202 50.000 28.61 4.68 37.02 3.58
4057 4436 0.603065 AAAAATGCAGGACCCGAAGC 59.397 50.000 0.00 0.00 0.00 3.86
4185 4564 2.426023 GTGGTGAACACGGAGCCT 59.574 61.111 0.00 0.00 40.85 4.58
4428 4807 0.550147 ACCCCAACTGTCCATAGCCT 60.550 55.000 0.00 0.00 0.00 4.58
4446 4826 5.656213 AGCCTTCCAAGAAATGAAATGAG 57.344 39.130 0.00 0.00 0.00 2.90
4450 4830 6.350780 GCCTTCCAAGAAATGAAATGAGATGT 60.351 38.462 0.00 0.00 0.00 3.06
4452 4832 6.764308 TCCAAGAAATGAAATGAGATGTCC 57.236 37.500 0.00 0.00 0.00 4.02
4453 4833 6.487828 TCCAAGAAATGAAATGAGATGTCCT 58.512 36.000 0.00 0.00 0.00 3.85
4480 4869 3.199677 CCCTAACAACAAGACAACACGA 58.800 45.455 0.00 0.00 0.00 4.35
4481 4870 3.001939 CCCTAACAACAAGACAACACGAC 59.998 47.826 0.00 0.00 0.00 4.34
4482 4871 2.798834 AACAACAAGACAACACGACG 57.201 45.000 0.00 0.00 0.00 5.12
4533 4922 6.432783 CCAGTAAATTAGTTCATTCACACCCA 59.567 38.462 0.00 0.00 0.00 4.51
4535 4924 8.023128 CAGTAAATTAGTTCATTCACACCCAAG 58.977 37.037 0.00 0.00 0.00 3.61
4536 4925 6.976934 AAATTAGTTCATTCACACCCAAGT 57.023 33.333 0.00 0.00 0.00 3.16
4660 5062 2.653726 AGGCAAGTGTTTGACATGTGA 58.346 42.857 1.15 0.00 45.25 3.58
4759 5163 1.557371 CCTGTTTGGTTTGGTTGGGTT 59.443 47.619 0.00 0.00 0.00 4.11
4760 5164 2.626840 CTGTTTGGTTTGGTTGGGTTG 58.373 47.619 0.00 0.00 0.00 3.77
4761 5165 1.279271 TGTTTGGTTTGGTTGGGTTGG 59.721 47.619 0.00 0.00 0.00 3.77
4762 5166 1.555533 GTTTGGTTTGGTTGGGTTGGA 59.444 47.619 0.00 0.00 0.00 3.53
4768 5179 3.230976 GTTTGGTTGGGTTGGATTCTCT 58.769 45.455 0.00 0.00 0.00 3.10
4773 5184 1.909700 TGGGTTGGATTCTCTTGTGC 58.090 50.000 0.00 0.00 0.00 4.57
4778 5189 3.149196 GTTGGATTCTCTTGTGCCTCAA 58.851 45.455 0.00 0.00 34.61 3.02
4787 5198 8.767478 ATTCTCTTGTGCCTCAAATTATTTTG 57.233 30.769 4.10 4.10 42.98 2.44
4790 5201 7.867403 TCTCTTGTGCCTCAAATTATTTTGTTC 59.133 33.333 9.31 2.65 42.37 3.18
4815 5227 2.420642 CATGTCACCAACCTCTCTGTG 58.579 52.381 0.00 0.00 0.00 3.66
4816 5228 0.758734 TGTCACCAACCTCTCTGTGG 59.241 55.000 0.00 0.00 0.00 4.17
4817 5229 0.035458 GTCACCAACCTCTCTGTGGG 59.965 60.000 0.00 0.00 35.26 4.61
4818 5230 0.105194 TCACCAACCTCTCTGTGGGA 60.105 55.000 0.00 0.00 33.19 4.37
4819 5231 0.035458 CACCAACCTCTCTGTGGGAC 59.965 60.000 0.00 0.00 33.19 4.46
4820 5232 0.104934 ACCAACCTCTCTGTGGGACT 60.105 55.000 0.00 0.00 33.19 3.85
4821 5233 0.610687 CCAACCTCTCTGTGGGACTC 59.389 60.000 0.00 0.00 30.04 3.36
4822 5234 1.342074 CAACCTCTCTGTGGGACTCA 58.658 55.000 0.00 0.00 0.00 3.41
4823 5235 1.694150 CAACCTCTCTGTGGGACTCAA 59.306 52.381 0.00 0.00 0.00 3.02
4824 5236 2.304180 CAACCTCTCTGTGGGACTCAAT 59.696 50.000 0.00 0.00 0.00 2.57
4825 5237 3.474798 ACCTCTCTGTGGGACTCAATA 57.525 47.619 0.00 0.00 0.00 1.90
4826 5238 3.791320 ACCTCTCTGTGGGACTCAATAA 58.209 45.455 0.00 0.00 0.00 1.40
4827 5239 3.515901 ACCTCTCTGTGGGACTCAATAAC 59.484 47.826 0.00 0.00 0.00 1.89
4828 5240 3.772025 CCTCTCTGTGGGACTCAATAACT 59.228 47.826 0.00 0.00 0.00 2.24
4829 5241 4.223923 CCTCTCTGTGGGACTCAATAACTT 59.776 45.833 0.00 0.00 0.00 2.66
4832 5244 5.422331 TCTCTGTGGGACTCAATAACTTAGG 59.578 44.000 0.00 0.00 0.00 2.69
4853 5265 2.177531 GCGCATGTGTGAGCCTTG 59.822 61.111 0.30 0.00 44.22 3.61
4854 5266 2.620112 GCGCATGTGTGAGCCTTGT 61.620 57.895 0.30 0.00 44.22 3.16
4855 5267 1.951510 CGCATGTGTGAGCCTTGTT 59.048 52.632 0.00 0.00 0.00 2.83
4856 5268 1.155889 CGCATGTGTGAGCCTTGTTA 58.844 50.000 0.00 0.00 0.00 2.41
4857 5269 1.535028 CGCATGTGTGAGCCTTGTTAA 59.465 47.619 0.00 0.00 0.00 2.01
4858 5270 2.665519 CGCATGTGTGAGCCTTGTTAAC 60.666 50.000 0.00 0.00 0.00 2.01
4859 5271 2.293122 GCATGTGTGAGCCTTGTTAACA 59.707 45.455 3.59 3.59 0.00 2.41
4860 5272 3.853307 GCATGTGTGAGCCTTGTTAACAC 60.853 47.826 8.07 0.00 41.15 3.32
4861 5273 2.294074 TGTGTGAGCCTTGTTAACACC 58.706 47.619 8.07 0.00 40.28 4.16
4862 5274 2.092646 TGTGTGAGCCTTGTTAACACCT 60.093 45.455 8.07 5.08 40.28 4.00
4863 5275 2.290641 GTGTGAGCCTTGTTAACACCTG 59.709 50.000 8.07 0.80 36.07 4.00
4864 5276 2.092646 TGTGAGCCTTGTTAACACCTGT 60.093 45.455 8.07 0.00 0.00 4.00
4865 5277 2.290641 GTGAGCCTTGTTAACACCTGTG 59.709 50.000 8.07 0.00 0.00 3.66
4866 5278 1.880027 GAGCCTTGTTAACACCTGTGG 59.120 52.381 8.07 7.04 34.19 4.17
4867 5279 1.493022 AGCCTTGTTAACACCTGTGGA 59.507 47.619 8.07 0.00 34.19 4.02
4868 5280 1.880027 GCCTTGTTAACACCTGTGGAG 59.120 52.381 8.07 0.87 34.19 3.86
4869 5281 2.748465 GCCTTGTTAACACCTGTGGAGT 60.748 50.000 8.07 0.00 34.19 3.85
4870 5282 3.495453 GCCTTGTTAACACCTGTGGAGTA 60.495 47.826 8.07 0.00 34.19 2.59
4871 5283 4.062991 CCTTGTTAACACCTGTGGAGTAC 58.937 47.826 8.07 0.00 34.19 2.73
4872 5284 3.756933 TGTTAACACCTGTGGAGTACC 57.243 47.619 3.59 0.00 34.19 3.34
4873 5285 3.039743 TGTTAACACCTGTGGAGTACCA 58.960 45.455 3.59 0.00 44.76 3.25
4888 5300 2.246761 TACCACCGGTACCAGCATGC 62.247 60.000 6.87 10.51 37.09 4.06
4910 5322 6.515832 TGCGCTATTCTATTCTGATTTCTGA 58.484 36.000 9.73 0.00 0.00 3.27
4911 5323 6.986231 TGCGCTATTCTATTCTGATTTCTGAA 59.014 34.615 9.73 2.89 38.01 3.02
5053 5765 4.384208 GCAGCAGGAAGAATAAGGTTAGGA 60.384 45.833 0.00 0.00 0.00 2.94
5316 6197 5.331069 TGGAAGGTTTAGTACTAGTGCTCT 58.669 41.667 17.38 5.46 0.00 4.09
5317 6198 5.778750 TGGAAGGTTTAGTACTAGTGCTCTT 59.221 40.000 17.38 13.62 0.00 2.85
5339 6220 1.615392 GTTGTGGCTTCCAGCTCAATT 59.385 47.619 8.99 0.00 41.99 2.32
5360 6241 0.730265 GTCGCAACCAAGTCAACACA 59.270 50.000 0.00 0.00 0.00 3.72
5377 6258 3.894759 ACACATCCCATTCTTCTCCATG 58.105 45.455 0.00 0.00 0.00 3.66
5378 6259 3.220110 CACATCCCATTCTTCTCCATGG 58.780 50.000 4.97 4.97 39.92 3.66
5385 6266 3.562973 CCATTCTTCTCCATGGACATTCG 59.437 47.826 11.44 0.12 42.49 3.34
5386 6267 3.981071 TTCTTCTCCATGGACATTCGT 57.019 42.857 11.44 0.00 0.00 3.85
5387 6268 5.359756 CATTCTTCTCCATGGACATTCGTA 58.640 41.667 11.44 0.00 0.00 3.43
5388 6269 4.655762 TCTTCTCCATGGACATTCGTAG 57.344 45.455 11.44 4.30 0.00 3.51
5389 6270 4.023980 TCTTCTCCATGGACATTCGTAGT 58.976 43.478 11.44 0.00 0.00 2.73
5390 6271 4.466370 TCTTCTCCATGGACATTCGTAGTT 59.534 41.667 11.44 0.00 0.00 2.24
5391 6272 4.123497 TCTCCATGGACATTCGTAGTTG 57.877 45.455 11.44 0.00 0.00 3.16
5392 6273 2.609459 CTCCATGGACATTCGTAGTTGC 59.391 50.000 11.44 0.00 0.00 4.17
5393 6274 2.027653 TCCATGGACATTCGTAGTTGCA 60.028 45.455 11.44 0.00 0.00 4.08
5394 6275 2.746904 CCATGGACATTCGTAGTTGCAA 59.253 45.455 5.56 0.00 0.00 4.08
5395 6276 3.190327 CCATGGACATTCGTAGTTGCAAA 59.810 43.478 5.56 0.00 0.00 3.68
5396 6277 4.320861 CCATGGACATTCGTAGTTGCAAAA 60.321 41.667 5.56 0.00 0.00 2.44
5397 6278 4.217754 TGGACATTCGTAGTTGCAAAAC 57.782 40.909 0.00 1.44 0.00 2.43
5398 6279 3.880490 TGGACATTCGTAGTTGCAAAACT 59.120 39.130 0.00 0.00 36.82 2.66
5399 6280 4.024387 TGGACATTCGTAGTTGCAAAACTC 60.024 41.667 0.00 0.00 34.37 3.01
5400 6281 4.128554 ACATTCGTAGTTGCAAAACTCG 57.871 40.909 0.00 4.49 34.37 4.18
5401 6282 3.805422 ACATTCGTAGTTGCAAAACTCGA 59.195 39.130 0.00 6.93 34.37 4.04
5402 6283 3.847037 TTCGTAGTTGCAAAACTCGAC 57.153 42.857 0.00 0.00 34.58 4.20
5403 6284 1.782569 TCGTAGTTGCAAAACTCGACG 59.217 47.619 0.00 7.40 36.57 5.12
5404 6285 1.717429 CGTAGTTGCAAAACTCGACGC 60.717 52.381 0.00 0.00 30.99 5.19
5405 6286 1.259507 GTAGTTGCAAAACTCGACGCA 59.740 47.619 0.00 0.00 34.37 5.24
5406 6287 0.304705 AGTTGCAAAACTCGACGCAG 59.695 50.000 0.00 0.00 35.47 5.18
5407 6288 1.010125 TTGCAAAACTCGACGCAGC 60.010 52.632 0.00 0.00 35.47 5.25
5408 6289 1.710103 TTGCAAAACTCGACGCAGCA 61.710 50.000 0.00 0.00 35.47 4.41
5409 6290 1.010125 GCAAAACTCGACGCAGCAA 60.010 52.632 0.00 0.00 0.00 3.91
5410 6291 0.385974 GCAAAACTCGACGCAGCAAT 60.386 50.000 0.00 0.00 0.00 3.56
5411 6292 1.595609 CAAAACTCGACGCAGCAATC 58.404 50.000 0.00 0.00 0.00 2.67
5412 6293 1.069973 CAAAACTCGACGCAGCAATCA 60.070 47.619 0.00 0.00 0.00 2.57
5413 6294 0.792640 AAACTCGACGCAGCAATCAG 59.207 50.000 0.00 0.00 0.00 2.90
5414 6295 1.630244 AACTCGACGCAGCAATCAGC 61.630 55.000 0.00 0.00 46.19 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.477975 GTCCAGTCGTCGGAGCGG 62.478 72.222 0.00 0.00 31.65 5.52
39 40 4.477975 GGTCCAGTCGTCGGAGCG 62.478 72.222 6.88 0.00 40.91 5.03
41 42 2.408241 GGAGGTCCAGTCGTCGGAG 61.408 68.421 0.00 0.00 35.64 4.63
42 43 2.360852 GGAGGTCCAGTCGTCGGA 60.361 66.667 0.00 0.00 35.64 4.55
43 44 2.675423 TGGAGGTCCAGTCGTCGG 60.675 66.667 0.00 0.00 42.01 4.79
52 53 1.153349 GCTTGTCGGATGGAGGTCC 60.153 63.158 0.00 0.00 34.82 4.46
53 54 1.153349 GGCTTGTCGGATGGAGGTC 60.153 63.158 0.00 0.00 0.00 3.85
54 55 2.670148 GGGCTTGTCGGATGGAGGT 61.670 63.158 0.00 0.00 0.00 3.85
55 56 2.190578 GGGCTTGTCGGATGGAGG 59.809 66.667 0.00 0.00 0.00 4.30
56 57 2.202932 CGGGCTTGTCGGATGGAG 60.203 66.667 0.00 0.00 0.00 3.86
57 58 2.589157 AACGGGCTTGTCGGATGGA 61.589 57.895 0.00 0.00 0.00 3.41
58 59 2.046314 AACGGGCTTGTCGGATGG 60.046 61.111 0.00 0.00 0.00 3.51
59 60 2.398554 CCAACGGGCTTGTCGGATG 61.399 63.158 0.00 0.00 0.00 3.51
60 61 2.046314 CCAACGGGCTTGTCGGAT 60.046 61.111 0.00 0.00 0.00 4.18
70 71 1.676006 GTATCATCCTTTGCCAACGGG 59.324 52.381 0.00 0.00 37.18 5.28
71 72 1.676006 GGTATCATCCTTTGCCAACGG 59.324 52.381 0.00 0.00 0.00 4.44
72 73 1.330521 CGGTATCATCCTTTGCCAACG 59.669 52.381 0.00 0.00 0.00 4.10
73 74 2.614057 CTCGGTATCATCCTTTGCCAAC 59.386 50.000 0.00 0.00 0.00 3.77
74 75 2.421388 CCTCGGTATCATCCTTTGCCAA 60.421 50.000 0.00 0.00 0.00 4.52
75 76 1.140852 CCTCGGTATCATCCTTTGCCA 59.859 52.381 0.00 0.00 0.00 4.92
76 77 1.884235 CCTCGGTATCATCCTTTGCC 58.116 55.000 0.00 0.00 0.00 4.52
77 78 1.202698 AGCCTCGGTATCATCCTTTGC 60.203 52.381 0.00 0.00 0.00 3.68
78 79 2.918712 AGCCTCGGTATCATCCTTTG 57.081 50.000 0.00 0.00 0.00 2.77
79 80 3.041946 AGAAGCCTCGGTATCATCCTTT 58.958 45.455 0.00 0.00 0.00 3.11
80 81 2.683768 AGAAGCCTCGGTATCATCCTT 58.316 47.619 0.00 0.00 0.00 3.36
81 82 2.390225 AGAAGCCTCGGTATCATCCT 57.610 50.000 0.00 0.00 0.00 3.24
82 83 2.095161 CGTAGAAGCCTCGGTATCATCC 60.095 54.545 0.00 0.00 0.00 3.51
83 84 2.668834 GCGTAGAAGCCTCGGTATCATC 60.669 54.545 0.00 0.00 0.00 2.92
84 85 1.269998 GCGTAGAAGCCTCGGTATCAT 59.730 52.381 0.00 0.00 0.00 2.45
85 86 0.666913 GCGTAGAAGCCTCGGTATCA 59.333 55.000 0.00 0.00 0.00 2.15
86 87 3.475754 GCGTAGAAGCCTCGGTATC 57.524 57.895 0.00 0.00 0.00 2.24
95 96 5.547181 ACTTTTAAGAATGGCGTAGAAGC 57.453 39.130 0.00 0.00 29.68 3.86
96 97 7.581476 TCAAACTTTTAAGAATGGCGTAGAAG 58.419 34.615 0.00 0.00 31.85 2.85
97 98 7.499321 TCAAACTTTTAAGAATGGCGTAGAA 57.501 32.000 0.00 0.00 0.00 2.10
98 99 7.499321 TTCAAACTTTTAAGAATGGCGTAGA 57.501 32.000 0.00 0.00 0.00 2.59
99 100 8.161754 CATTCAAACTTTTAAGAATGGCGTAG 57.838 34.615 0.00 0.00 42.08 3.51
105 106 9.437045 GCAAAACCATTCAAACTTTTAAGAATG 57.563 29.630 0.00 0.00 44.18 2.67
106 107 8.334632 CGCAAAACCATTCAAACTTTTAAGAAT 58.665 29.630 0.00 0.00 0.00 2.40
107 108 7.201565 CCGCAAAACCATTCAAACTTTTAAGAA 60.202 33.333 0.00 0.00 0.00 2.52
108 109 6.256757 CCGCAAAACCATTCAAACTTTTAAGA 59.743 34.615 0.00 0.00 0.00 2.10
109 110 6.418141 CCGCAAAACCATTCAAACTTTTAAG 58.582 36.000 0.00 0.00 0.00 1.85
110 111 5.294552 CCCGCAAAACCATTCAAACTTTTAA 59.705 36.000 0.00 0.00 0.00 1.52
111 112 4.811557 CCCGCAAAACCATTCAAACTTTTA 59.188 37.500 0.00 0.00 0.00 1.52
112 113 3.625313 CCCGCAAAACCATTCAAACTTTT 59.375 39.130 0.00 0.00 0.00 2.27
113 114 3.202097 CCCGCAAAACCATTCAAACTTT 58.798 40.909 0.00 0.00 0.00 2.66
114 115 2.484594 CCCCGCAAAACCATTCAAACTT 60.485 45.455 0.00 0.00 0.00 2.66
115 116 1.069978 CCCCGCAAAACCATTCAAACT 59.930 47.619 0.00 0.00 0.00 2.66
116 117 1.507562 CCCCGCAAAACCATTCAAAC 58.492 50.000 0.00 0.00 0.00 2.93
117 118 0.394565 CCCCCGCAAAACCATTCAAA 59.605 50.000 0.00 0.00 0.00 2.69
118 119 0.470080 TCCCCCGCAAAACCATTCAA 60.470 50.000 0.00 0.00 0.00 2.69
119 120 0.470080 TTCCCCCGCAAAACCATTCA 60.470 50.000 0.00 0.00 0.00 2.57
120 121 0.901827 ATTCCCCCGCAAAACCATTC 59.098 50.000 0.00 0.00 0.00 2.67
121 122 0.901827 GATTCCCCCGCAAAACCATT 59.098 50.000 0.00 0.00 0.00 3.16
122 123 0.041090 AGATTCCCCCGCAAAACCAT 59.959 50.000 0.00 0.00 0.00 3.55
123 124 0.178947 AAGATTCCCCCGCAAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
124 125 1.842052 TAAGATTCCCCCGCAAAACC 58.158 50.000 0.00 0.00 0.00 3.27
125 126 5.585820 TTATTAAGATTCCCCCGCAAAAC 57.414 39.130 0.00 0.00 0.00 2.43
126 127 5.717654 ACTTTATTAAGATTCCCCCGCAAAA 59.282 36.000 0.00 0.00 35.30 2.44
127 128 5.265989 ACTTTATTAAGATTCCCCCGCAAA 58.734 37.500 0.00 0.00 35.30 3.68
128 129 4.862371 ACTTTATTAAGATTCCCCCGCAA 58.138 39.130 0.00 0.00 35.30 4.85
129 130 4.513406 ACTTTATTAAGATTCCCCCGCA 57.487 40.909 0.00 0.00 35.30 5.69
130 131 6.060136 AGTAACTTTATTAAGATTCCCCCGC 58.940 40.000 0.00 0.00 35.30 6.13
131 132 9.617523 TTAAGTAACTTTATTAAGATTCCCCCG 57.382 33.333 0.00 0.00 35.30 5.73
159 160 7.073457 TGCAGGTTAATATGACAATAGCCTA 57.927 36.000 0.00 0.00 0.00 3.93
167 168 8.747471 TCATTTGATTTGCAGGTTAATATGACA 58.253 29.630 0.00 0.00 0.00 3.58
256 269 8.066595 CGATTCATCAGTCAAAAAGGATGATAC 58.933 37.037 0.00 0.00 43.86 2.24
316 329 5.181811 CCCGTTAGAAAAGGTTACCGATTTT 59.818 40.000 9.01 5.57 0.00 1.82
337 350 4.219725 AGGATTTTGTTTTGATACACCCCG 59.780 41.667 0.00 0.00 0.00 5.73
405 449 0.389426 TCTCCTACGGCGCAACTTTC 60.389 55.000 10.83 0.00 0.00 2.62
425 469 3.446570 CGTCCTCGCCTACCCGTT 61.447 66.667 0.00 0.00 0.00 4.44
428 472 2.521224 ATCCGTCCTCGCCTACCC 60.521 66.667 0.00 0.00 35.54 3.69
429 473 2.728817 CATCCGTCCTCGCCTACC 59.271 66.667 0.00 0.00 35.54 3.18
430 474 2.027751 GCATCCGTCCTCGCCTAC 59.972 66.667 0.00 0.00 35.54 3.18
431 475 2.441348 TGCATCCGTCCTCGCCTA 60.441 61.111 0.00 0.00 35.54 3.93
432 476 3.842923 CTGCATCCGTCCTCGCCT 61.843 66.667 0.00 0.00 35.54 5.52
433 477 3.781770 CTCTGCATCCGTCCTCGCC 62.782 68.421 0.00 0.00 35.54 5.54
434 478 2.279120 CTCTGCATCCGTCCTCGC 60.279 66.667 0.00 0.00 35.54 5.03
435 479 1.226802 CACTCTGCATCCGTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
436 480 1.520342 GCACTCTGCATCCGTCCTC 60.520 63.158 0.00 0.00 44.26 3.71
437 481 2.581354 GCACTCTGCATCCGTCCT 59.419 61.111 0.00 0.00 44.26 3.85
438 482 2.279502 TACGCACTCTGCATCCGTCC 62.280 60.000 0.00 0.00 45.36 4.79
439 483 1.138883 TACGCACTCTGCATCCGTC 59.861 57.895 0.00 0.00 45.36 4.79
440 484 1.153823 GTACGCACTCTGCATCCGT 60.154 57.895 0.00 0.00 45.36 4.69
441 485 0.528466 ATGTACGCACTCTGCATCCG 60.528 55.000 0.00 0.00 45.36 4.18
442 486 0.933097 CATGTACGCACTCTGCATCC 59.067 55.000 0.00 0.00 45.36 3.51
443 487 0.933097 CCATGTACGCACTCTGCATC 59.067 55.000 0.00 0.00 45.36 3.91
444 488 0.536724 TCCATGTACGCACTCTGCAT 59.463 50.000 0.00 0.00 45.36 3.96
445 489 0.320050 TTCCATGTACGCACTCTGCA 59.680 50.000 0.00 0.00 45.36 4.41
446 490 1.128692 GTTTCCATGTACGCACTCTGC 59.871 52.381 0.00 0.00 40.69 4.26
447 491 2.668457 GAGTTTCCATGTACGCACTCTG 59.332 50.000 0.00 0.00 0.00 3.35
453 497 0.638746 CGACGAGTTTCCATGTACGC 59.361 55.000 0.00 0.00 0.00 4.42
547 742 2.106683 CGGGTTCGGTTGCAGGATC 61.107 63.158 0.00 0.00 0.00 3.36
683 889 1.933021 TAAAGCTGGGACGAGAGGAA 58.067 50.000 0.00 0.00 0.00 3.36
743 951 1.928714 GACGGGGGAGAGAGAGAGGT 61.929 65.000 0.00 0.00 0.00 3.85
766 979 0.179936 ACGAGTAGAGTAGGACGGGG 59.820 60.000 0.00 0.00 0.00 5.73
902 1125 2.357034 GGAACGACGAGGCAAGCA 60.357 61.111 0.00 0.00 0.00 3.91
949 1187 3.406361 CGCACAGTCGCACTCACC 61.406 66.667 0.00 0.00 0.00 4.02
1209 1466 0.175760 GTACCTCAATGCTGGCGAGA 59.824 55.000 0.00 0.00 0.00 4.04
1244 1501 1.136695 GAGGGAGACGAGACGAGACTA 59.863 57.143 0.00 0.00 0.00 2.59
1343 1607 2.155924 CGCACCGTCTCTCTTTTCTTTC 59.844 50.000 0.00 0.00 0.00 2.62
1402 1670 1.726865 CGCGCATGAAGCCCATAAA 59.273 52.632 8.75 0.00 41.38 1.40
1479 1747 4.723309 AGAGATTAAATGCATGGTCCTCC 58.277 43.478 0.00 0.00 0.00 4.30
1484 1752 5.999044 ACAGAGAGAGATTAAATGCATGGT 58.001 37.500 0.00 0.00 0.00 3.55
1537 1813 1.128200 GGCACCCATAAATTTCCCCC 58.872 55.000 0.00 0.00 0.00 5.40
1574 1850 0.319555 TGGCTCCTTTCAACGTCGAG 60.320 55.000 0.00 0.00 0.00 4.04
1625 1905 0.607620 GACTGCTGCAGTTCTCTCCT 59.392 55.000 33.33 10.70 45.44 3.69
1666 1951 9.326413 CTGAAAGAAGAACACTAGTAGGAAAAA 57.674 33.333 1.45 0.00 34.07 1.94
1667 1952 8.483758 ACTGAAAGAAGAACACTAGTAGGAAAA 58.516 33.333 1.45 0.00 37.43 2.29
1668 1953 8.019656 ACTGAAAGAAGAACACTAGTAGGAAA 57.980 34.615 1.45 0.00 37.43 3.13
1669 1954 7.598759 ACTGAAAGAAGAACACTAGTAGGAA 57.401 36.000 1.45 0.00 37.43 3.36
1671 1956 6.869388 GGAACTGAAAGAAGAACACTAGTAGG 59.131 42.308 1.45 0.00 37.43 3.18
1714 2008 1.958288 ACATGTAAGAGACTGCCCCT 58.042 50.000 0.00 0.00 0.00 4.79
1739 2034 7.229306 AGACAACAGCTGAATAAAAACATGAGA 59.771 33.333 23.35 0.00 0.00 3.27
1740 2035 7.325338 CAGACAACAGCTGAATAAAAACATGAG 59.675 37.037 23.35 0.00 35.39 2.90
1741 2036 7.140705 CAGACAACAGCTGAATAAAAACATGA 58.859 34.615 23.35 0.00 35.39 3.07
1742 2037 6.364165 CCAGACAACAGCTGAATAAAAACATG 59.636 38.462 23.35 5.47 35.39 3.21
1767 2062 4.284378 GCATTGGCTTCAGAGTATCAAC 57.716 45.455 0.00 0.00 35.22 3.18
1941 2246 1.214175 TGGTTCTTGAGCAAAGGGTGA 59.786 47.619 0.00 0.00 36.46 4.02
1994 2299 2.364970 CCAACTGTGAAAAAGGGCATCA 59.635 45.455 0.00 0.00 0.00 3.07
1996 2301 1.693606 CCCAACTGTGAAAAAGGGCAT 59.306 47.619 0.00 0.00 0.00 4.40
2012 2317 1.228124 GCTGTGTGGTGTAGCCCAA 60.228 57.895 0.00 0.00 35.92 4.12
2013 2318 2.429930 GCTGTGTGGTGTAGCCCA 59.570 61.111 0.00 0.00 36.04 5.36
2016 2321 0.390472 GAGAGGCTGTGTGGTGTAGC 60.390 60.000 0.00 0.00 36.74 3.58
2017 2322 1.261480 AGAGAGGCTGTGTGGTGTAG 58.739 55.000 0.00 0.00 0.00 2.74
2018 2323 1.618837 GAAGAGAGGCTGTGTGGTGTA 59.381 52.381 0.00 0.00 0.00 2.90
2019 2324 0.394565 GAAGAGAGGCTGTGTGGTGT 59.605 55.000 0.00 0.00 0.00 4.16
2020 2325 0.683973 AGAAGAGAGGCTGTGTGGTG 59.316 55.000 0.00 0.00 0.00 4.17
2021 2326 0.972883 GAGAAGAGAGGCTGTGTGGT 59.027 55.000 0.00 0.00 0.00 4.16
2022 2327 0.248843 GGAGAAGAGAGGCTGTGTGG 59.751 60.000 0.00 0.00 0.00 4.17
2023 2328 0.248843 GGGAGAAGAGAGGCTGTGTG 59.751 60.000 0.00 0.00 0.00 3.82
2024 2329 0.907230 GGGGAGAAGAGAGGCTGTGT 60.907 60.000 0.00 0.00 0.00 3.72
2025 2330 1.621672 GGGGGAGAAGAGAGGCTGTG 61.622 65.000 0.00 0.00 0.00 3.66
2026 2331 1.306568 GGGGGAGAAGAGAGGCTGT 60.307 63.158 0.00 0.00 0.00 4.40
2027 2332 1.306482 TGGGGGAGAAGAGAGGCTG 60.306 63.158 0.00 0.00 0.00 4.85
2028 2333 1.306568 GTGGGGGAGAAGAGAGGCT 60.307 63.158 0.00 0.00 0.00 4.58
2029 2334 1.613630 TGTGGGGGAGAAGAGAGGC 60.614 63.158 0.00 0.00 0.00 4.70
2030 2335 0.545309 TGTGTGGGGGAGAAGAGAGG 60.545 60.000 0.00 0.00 0.00 3.69
2031 2336 1.209019 CATGTGTGGGGGAGAAGAGAG 59.791 57.143 0.00 0.00 0.00 3.20
2032 2337 1.203300 TCATGTGTGGGGGAGAAGAGA 60.203 52.381 0.00 0.00 0.00 3.10
2033 2338 1.279496 TCATGTGTGGGGGAGAAGAG 58.721 55.000 0.00 0.00 0.00 2.85
2034 2339 1.561076 CATCATGTGTGGGGGAGAAGA 59.439 52.381 0.00 0.00 0.00 2.87
2057 2362 1.542915 GTGCAGCACCATTCATTGAGT 59.457 47.619 15.27 0.00 0.00 3.41
2058 2363 1.816835 AGTGCAGCACCATTCATTGAG 59.183 47.619 22.41 0.00 34.49 3.02
2059 2364 1.913778 AGTGCAGCACCATTCATTGA 58.086 45.000 22.41 0.00 34.49 2.57
2060 2365 2.736144 AAGTGCAGCACCATTCATTG 57.264 45.000 22.41 0.00 34.49 2.82
2061 2366 3.069872 TGAAAAGTGCAGCACCATTCATT 59.930 39.130 27.57 12.80 35.81 2.57
2062 2367 2.629137 TGAAAAGTGCAGCACCATTCAT 59.371 40.909 27.57 10.96 35.81 2.57
2064 2369 2.294233 TCTGAAAAGTGCAGCACCATTC 59.706 45.455 22.41 23.56 34.49 2.67
2066 2371 1.610522 GTCTGAAAAGTGCAGCACCAT 59.389 47.619 22.41 8.82 34.49 3.55
2070 2381 1.220529 CTCGTCTGAAAAGTGCAGCA 58.779 50.000 0.00 0.00 33.45 4.41
2073 2384 0.884704 GGCCTCGTCTGAAAAGTGCA 60.885 55.000 0.00 0.00 0.00 4.57
2076 2387 0.603975 GCAGGCCTCGTCTGAAAAGT 60.604 55.000 0.00 0.00 37.47 2.66
2145 2456 7.149973 CACATTTGGATGATTTTCTGAGTGTT 58.850 34.615 0.00 0.00 36.73 3.32
2184 2498 2.592102 ATGGTGTTCTCTTGGCACAT 57.408 45.000 0.00 0.00 39.30 3.21
2208 2522 1.552792 CTCCTTCTTGGTCCTCCTGAC 59.447 57.143 0.00 0.00 43.67 3.51
2231 2545 2.596851 GGAGCTGGCCCTGAAGACA 61.597 63.158 0.00 0.00 0.00 3.41
2279 2593 2.035783 GAGGGGTTTGGGGTGCTC 59.964 66.667 0.00 0.00 0.00 4.26
2288 2602 2.598394 TCGACGGACGAGGGGTTT 60.598 61.111 0.00 0.00 46.45 3.27
2327 2641 1.788518 ATTGCTGTACCTGGTGGCCA 61.789 55.000 10.23 0.00 36.63 5.36
2344 2658 4.021229 TGCTGAATCTTGAATGGAGCATT 58.979 39.130 0.00 0.00 36.72 3.56
2532 2850 1.693640 CCCCAGGATCCAAAGCTGT 59.306 57.895 15.82 0.00 0.00 4.40
2571 2889 1.068055 CACCCTGCTTCAATGCTGTTC 60.068 52.381 0.00 0.00 0.00 3.18
2801 3128 1.692411 AAGTGCAAGGGTCCTTTCAC 58.308 50.000 19.83 19.83 45.72 3.18
2825 3155 5.081032 AGAACAAGTCTGGCTTCTACTACT 58.919 41.667 0.00 0.00 34.29 2.57
2837 3167 5.994054 TCAGAGAAAATGGAGAACAAGTCTG 59.006 40.000 0.00 0.00 36.41 3.51
2843 3173 9.388506 GAGAAATATCAGAGAAAATGGAGAACA 57.611 33.333 0.00 0.00 0.00 3.18
2963 3305 3.032459 GGGAAGAGACTAAGTACAGGGG 58.968 54.545 0.00 0.00 0.00 4.79
2964 3306 3.983821 AGGGAAGAGACTAAGTACAGGG 58.016 50.000 0.00 0.00 0.00 4.45
2965 3307 4.773149 ACAAGGGAAGAGACTAAGTACAGG 59.227 45.833 0.00 0.00 0.00 4.00
2968 3310 4.621038 GCCACAAGGGAAGAGACTAAGTAC 60.621 50.000 0.00 0.00 40.01 2.73
2971 3313 2.569404 AGCCACAAGGGAAGAGACTAAG 59.431 50.000 0.00 0.00 40.01 2.18
3042 3384 3.709653 AGGTGAAGAGTCTGGTGTTGTTA 59.290 43.478 0.00 0.00 0.00 2.41
3101 3444 1.439543 AAGCAAGAGGACAAGAGGGT 58.560 50.000 0.00 0.00 0.00 4.34
3165 3509 0.824109 TCAGTACTCAGGCCATTCCG 59.176 55.000 5.01 0.00 40.77 4.30
3209 3554 1.266989 CCTGATACGCATCGCTCTACA 59.733 52.381 0.00 0.00 33.51 2.74
3663 4019 3.744238 TTTCGATCGCAGGGATGATAA 57.256 42.857 11.09 0.00 34.82 1.75
3665 4021 2.847327 ATTTCGATCGCAGGGATGAT 57.153 45.000 11.09 0.00 34.82 2.45
3666 4022 2.620251 AATTTCGATCGCAGGGATGA 57.380 45.000 11.09 0.54 34.82 2.92
3668 4024 3.278574 TCAAAATTTCGATCGCAGGGAT 58.721 40.909 11.09 0.00 38.35 3.85
3707 4066 1.866601 GAACATGCAAGTGTTTTGGCC 59.133 47.619 7.11 0.00 42.08 5.36
3781 4141 4.804868 TGCAAGTGCCAAATGATAACAT 57.195 36.364 0.00 0.00 41.18 2.71
3814 4174 4.855340 TGAAAATGACCAGGGAATAGGAC 58.145 43.478 0.00 0.00 0.00 3.85
3817 4177 6.101997 GCTTTTGAAAATGACCAGGGAATAG 58.898 40.000 0.00 0.00 0.00 1.73
3962 4333 6.615617 TCAGGAGATAGATGTAGGTTAGCTT 58.384 40.000 0.00 0.00 0.00 3.74
4002 4373 2.650765 CGCGCGCATAGTTAGTTAGTAG 59.349 50.000 32.61 4.31 0.00 2.57
4003 4374 2.642995 CGCGCGCATAGTTAGTTAGTA 58.357 47.619 32.61 0.00 0.00 1.82
4004 4375 1.474017 CGCGCGCATAGTTAGTTAGT 58.526 50.000 32.61 0.00 0.00 2.24
4005 4376 0.158928 GCGCGCGCATAGTTAGTTAG 59.841 55.000 46.11 10.98 41.49 2.34
4057 4436 2.987547 CAGCCACCAGTTGCCCTG 60.988 66.667 0.00 0.00 41.15 4.45
4404 4783 2.586648 ATGGACAGTTGGGGTTCTTC 57.413 50.000 0.00 0.00 0.00 2.87
4428 4807 6.950041 AGGACATCTCATTTCATTTCTTGGAA 59.050 34.615 0.00 0.00 0.00 3.53
4446 4826 1.559682 TGTTAGGGCTTGGAGGACATC 59.440 52.381 0.00 0.00 0.00 3.06
4450 4830 1.440618 TGTTGTTAGGGCTTGGAGGA 58.559 50.000 0.00 0.00 0.00 3.71
4452 4832 2.814336 GTCTTGTTGTTAGGGCTTGGAG 59.186 50.000 0.00 0.00 0.00 3.86
4453 4833 2.173782 TGTCTTGTTGTTAGGGCTTGGA 59.826 45.455 0.00 0.00 0.00 3.53
4482 4871 3.043999 ATAGGCGTCAAGGGGGTGC 62.044 63.158 0.00 0.00 0.00 5.01
4533 4922 3.602205 AAAAAGAAGGAGGCTCCACTT 57.398 42.857 33.86 30.43 39.61 3.16
4660 5062 1.001406 CTCCGAGGCAGAGAACAAACT 59.999 52.381 0.00 0.00 32.86 2.66
4750 5154 2.176798 ACAAGAGAATCCAACCCAACCA 59.823 45.455 0.00 0.00 33.66 3.67
4759 5163 3.507162 TTTGAGGCACAAGAGAATCCA 57.493 42.857 0.00 0.00 39.77 3.41
4760 5164 6.705863 ATAATTTGAGGCACAAGAGAATCC 57.294 37.500 0.00 0.00 39.77 3.01
4761 5165 8.992835 AAAATAATTTGAGGCACAAGAGAATC 57.007 30.769 0.00 0.00 39.77 2.52
4778 5189 6.070824 GGTGACATGGGAGGAACAAAATAATT 60.071 38.462 0.00 0.00 0.00 1.40
4787 5198 1.534729 GTTGGTGACATGGGAGGAAC 58.465 55.000 0.00 0.00 42.32 3.62
4790 5201 0.035056 GAGGTTGGTGACATGGGAGG 60.035 60.000 0.00 0.00 42.32 4.30
4815 5227 3.939592 GCACACCTAAGTTATTGAGTCCC 59.060 47.826 0.00 0.00 0.00 4.46
4816 5228 3.617263 CGCACACCTAAGTTATTGAGTCC 59.383 47.826 0.00 0.00 0.00 3.85
4817 5229 3.062234 GCGCACACCTAAGTTATTGAGTC 59.938 47.826 0.30 0.00 0.00 3.36
4818 5230 3.000727 GCGCACACCTAAGTTATTGAGT 58.999 45.455 0.30 0.00 0.00 3.41
4819 5231 3.000041 TGCGCACACCTAAGTTATTGAG 59.000 45.455 5.66 0.00 0.00 3.02
4820 5232 3.046968 TGCGCACACCTAAGTTATTGA 57.953 42.857 5.66 0.00 0.00 2.57
4821 5233 3.126858 ACATGCGCACACCTAAGTTATTG 59.873 43.478 14.90 4.46 0.00 1.90
4822 5234 3.126858 CACATGCGCACACCTAAGTTATT 59.873 43.478 14.90 0.00 0.00 1.40
4823 5235 2.677836 CACATGCGCACACCTAAGTTAT 59.322 45.455 14.90 0.00 0.00 1.89
4824 5236 2.073056 CACATGCGCACACCTAAGTTA 58.927 47.619 14.90 0.00 0.00 2.24
4825 5237 0.874390 CACATGCGCACACCTAAGTT 59.126 50.000 14.90 0.00 0.00 2.66
4826 5238 0.250295 ACACATGCGCACACCTAAGT 60.250 50.000 14.90 1.47 0.00 2.24
4827 5239 0.166597 CACACATGCGCACACCTAAG 59.833 55.000 14.90 0.74 0.00 2.18
4828 5240 0.250081 TCACACATGCGCACACCTAA 60.250 50.000 14.90 0.00 0.00 2.69
4829 5241 0.670239 CTCACACATGCGCACACCTA 60.670 55.000 14.90 0.00 0.00 3.08
4832 5244 2.127118 GCTCACACATGCGCACAC 60.127 61.111 14.90 0.00 36.52 3.82
4850 5262 4.062991 GGTACTCCACAGGTGTTAACAAG 58.937 47.826 10.51 4.78 31.55 3.16
4851 5263 3.455177 TGGTACTCCACAGGTGTTAACAA 59.545 43.478 10.51 0.00 39.03 2.83
4852 5264 3.039743 TGGTACTCCACAGGTGTTAACA 58.960 45.455 3.59 3.59 39.03 2.41
4853 5265 3.756933 TGGTACTCCACAGGTGTTAAC 57.243 47.619 0.00 0.00 39.03 2.01
4869 5281 1.901820 CATGCTGGTACCGGTGGTA 59.098 57.895 19.93 4.64 37.09 3.25
4870 5282 2.668632 CATGCTGGTACCGGTGGT 59.331 61.111 19.93 5.77 40.16 4.16
4871 5283 2.824041 GCATGCTGGTACCGGTGG 60.824 66.667 19.93 12.41 0.00 4.61
4872 5284 3.195002 CGCATGCTGGTACCGGTG 61.195 66.667 19.93 14.05 0.00 4.94
4888 5300 8.809159 TCTTCAGAAATCAGAATAGAATAGCG 57.191 34.615 0.00 0.00 0.00 4.26
4895 5307 8.457261 CCCACTTTTCTTCAGAAATCAGAATAG 58.543 37.037 2.83 0.00 42.83 1.73
4910 5322 4.606210 ACACTTGGTTACCCACTTTTCTT 58.394 39.130 0.00 0.00 41.67 2.52
4911 5323 4.245251 ACACTTGGTTACCCACTTTTCT 57.755 40.909 0.00 0.00 41.67 2.52
5001 5414 1.701292 CAGGTGATGGATGGATGGCTA 59.299 52.381 0.00 0.00 0.00 3.93
5003 5416 0.184451 ACAGGTGATGGATGGATGGC 59.816 55.000 0.00 0.00 0.00 4.40
5053 5765 1.152247 TCCCTGCCACTCACTCAGT 60.152 57.895 0.00 0.00 34.67 3.41
5102 5814 1.531423 CTTGCAATGTGAGCTCCACT 58.469 50.000 12.15 0.00 45.86 4.00
5286 6167 7.711339 CACTAGTACTAAACCTTCCATTCCATC 59.289 40.741 3.76 0.00 0.00 3.51
5339 6220 0.460459 TGTTGACTTGGTTGCGACGA 60.460 50.000 0.00 0.00 0.00 4.20
5360 6241 3.125656 TGTCCATGGAGAAGAATGGGAT 58.874 45.455 16.81 0.00 43.09 3.85
5377 6258 4.464112 GAGTTTTGCAACTACGAATGTCC 58.536 43.478 0.00 0.00 43.79 4.02
5378 6259 4.084745 TCGAGTTTTGCAACTACGAATGTC 60.085 41.667 0.00 0.00 43.79 3.06
5385 6266 1.259507 TGCGTCGAGTTTTGCAACTAC 59.740 47.619 0.00 0.00 43.79 2.73
5386 6267 1.525197 CTGCGTCGAGTTTTGCAACTA 59.475 47.619 0.00 0.00 43.79 2.24
5387 6268 0.304705 CTGCGTCGAGTTTTGCAACT 59.695 50.000 0.00 0.00 46.64 3.16
5388 6269 1.262166 GCTGCGTCGAGTTTTGCAAC 61.262 55.000 0.00 0.00 36.82 4.17
5389 6270 1.010125 GCTGCGTCGAGTTTTGCAA 60.010 52.632 0.00 0.00 36.82 4.08
5390 6271 1.710103 TTGCTGCGTCGAGTTTTGCA 61.710 50.000 0.00 0.00 35.75 4.08
5391 6272 0.385974 ATTGCTGCGTCGAGTTTTGC 60.386 50.000 0.00 0.00 0.00 3.68
5392 6273 1.069973 TGATTGCTGCGTCGAGTTTTG 60.070 47.619 0.00 0.00 0.00 2.44
5393 6274 1.195448 CTGATTGCTGCGTCGAGTTTT 59.805 47.619 0.00 0.00 0.00 2.43
5394 6275 0.792640 CTGATTGCTGCGTCGAGTTT 59.207 50.000 0.00 0.00 0.00 2.66
5395 6276 1.630244 GCTGATTGCTGCGTCGAGTT 61.630 55.000 0.00 0.00 38.95 3.01
5396 6277 2.097038 GCTGATTGCTGCGTCGAGT 61.097 57.895 0.00 0.00 38.95 4.18
5397 6278 2.699809 GCTGATTGCTGCGTCGAG 59.300 61.111 0.00 0.00 38.95 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.