Multiple sequence alignment - TraesCS2B01G222100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G222100 chr2B 100.000 4717 0 0 1 4717 211995594 212000310 0.000000e+00 8711.0
1 TraesCS2B01G222100 chr2B 95.580 1199 49 4 3521 4717 677976819 677978015 0.000000e+00 1917.0
2 TraesCS2B01G222100 chr2B 95.325 1155 47 6 3565 4717 677980471 677979322 0.000000e+00 1827.0
3 TraesCS2B01G222100 chr2B 94.005 1201 55 8 3521 4717 762354175 762352988 0.000000e+00 1803.0
4 TraesCS2B01G222100 chr2B 95.484 1063 43 5 3657 4717 422188760 422189819 0.000000e+00 1692.0
5 TraesCS2B01G222100 chr2B 85.460 674 81 2 3 659 607343000 607342327 0.000000e+00 686.0
6 TraesCS2B01G222100 chr2A 94.472 2587 124 7 782 3359 145448187 145445611 0.000000e+00 3967.0
7 TraesCS2B01G222100 chr2A 84.195 677 79 14 3 662 757083949 757083284 2.400000e-177 632.0
8 TraesCS2B01G222100 chr2A 83.780 672 97 6 1 662 572098862 572098193 1.110000e-175 627.0
9 TraesCS2B01G222100 chr2A 84.425 565 61 16 1 549 656230519 656231072 8.990000e-147 531.0
10 TraesCS2B01G222100 chr2D 93.682 2580 116 12 782 3325 154836554 154839122 0.000000e+00 3818.0
11 TraesCS2B01G222100 chr2D 100.000 52 0 0 3315 3366 154839186 154839237 3.890000e-16 97.1
12 TraesCS2B01G222100 chr6D 96.333 1200 40 4 3521 4717 76067283 76066085 0.000000e+00 1969.0
13 TraesCS2B01G222100 chr6D 84.625 800 86 6 1 773 380703791 380704580 0.000000e+00 761.0
14 TraesCS2B01G222100 chr6D 84.094 679 78 9 2 659 303986796 303987465 3.100000e-176 628.0
15 TraesCS2B01G222100 chrUn 95.830 1199 46 4 3521 4717 201220578 201221774 0.000000e+00 1934.0
16 TraesCS2B01G222100 chr7B 95.496 1199 50 4 3521 4717 470294602 470293406 0.000000e+00 1912.0
17 TraesCS2B01G222100 chr7B 95.246 1199 52 5 3521 4717 470243615 470242420 0.000000e+00 1893.0
18 TraesCS2B01G222100 chr7B 94.825 1198 42 11 3523 4717 25662356 25661176 0.000000e+00 1851.0
19 TraesCS2B01G222100 chr7B 92.105 38 3 0 736 773 148970069 148970032 2.000000e-03 54.7
20 TraesCS2B01G222100 chr7B 96.774 31 1 0 3074 3104 617487914 617487944 9.000000e-03 52.8
21 TraesCS2B01G222100 chr6B 95.000 1200 54 6 3521 4717 229143735 229144931 0.000000e+00 1879.0
22 TraesCS2B01G222100 chr6B 79.294 652 115 11 135 773 488843581 488842937 5.600000e-119 438.0
23 TraesCS2B01G222100 chr6B 91.304 46 4 0 728 773 11453701 11453656 3.940000e-06 63.9
24 TraesCS2B01G222100 chr6B 96.875 32 1 0 3074 3105 216356659 216356690 2.000000e-03 54.7
25 TraesCS2B01G222100 chr1B 94.527 1206 53 7 3521 4717 631822061 631823262 0.000000e+00 1849.0
26 TraesCS2B01G222100 chr1B 87.202 461 57 2 86 545 447161361 447161820 1.500000e-144 523.0
27 TraesCS2B01G222100 chr7A 92.683 943 62 6 3521 4459 63572515 63573454 0.000000e+00 1352.0
28 TraesCS2B01G222100 chr7A 96.774 31 1 0 3074 3104 652233977 652234007 9.000000e-03 52.8
29 TraesCS2B01G222100 chr4A 86.398 669 78 6 3 659 588591309 588590642 0.000000e+00 719.0
30 TraesCS2B01G222100 chr6A 83.900 677 91 3 3 662 201655095 201654420 8.610000e-177 630.0
31 TraesCS2B01G222100 chr6A 85.484 62 7 2 714 774 69127337 69127397 3.940000e-06 63.9
32 TraesCS2B01G222100 chr5B 83.804 673 92 8 1 657 382573093 382572422 1.440000e-174 623.0
33 TraesCS2B01G222100 chr4B 83.881 670 90 10 10 662 442973948 442973280 1.440000e-174 623.0
34 TraesCS2B01G222100 chr4B 83.274 562 67 12 1 545 100402309 100402860 4.240000e-135 492.0
35 TraesCS2B01G222100 chr3B 84.164 562 72 6 1 545 474418262 474417701 3.230000e-146 529.0
36 TraesCS2B01G222100 chr4D 81.399 629 97 10 135 750 5796808 5796187 3.280000e-136 496.0
37 TraesCS2B01G222100 chr7D 78.261 805 135 24 1 773 517310882 517311678 9.180000e-132 481.0
38 TraesCS2B01G222100 chr7D 96.875 32 1 0 3074 3105 565619466 565619497 2.000000e-03 54.7
39 TraesCS2B01G222100 chr7D 96.774 31 1 0 3074 3104 565645727 565645757 9.000000e-03 52.8
40 TraesCS2B01G222100 chr5A 81.195 569 75 17 3 541 94307608 94307042 3.370000e-116 429.0
41 TraesCS2B01G222100 chr3D 87.532 385 31 5 1 368 608509438 608509822 3.370000e-116 429.0
42 TraesCS2B01G222100 chr3D 85.246 61 8 1 713 773 527520838 527520779 1.420000e-05 62.1
43 TraesCS2B01G222100 chr3A 84.444 90 13 1 685 773 720890804 720890893 2.340000e-13 87.9
44 TraesCS2B01G222100 chr3A 84.444 90 13 1 685 773 720918005 720918094 2.340000e-13 87.9
45 TraesCS2B01G222100 chr3A 84.444 90 13 1 685 773 720937787 720937876 2.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G222100 chr2B 211995594 212000310 4716 False 8711.00 8711 100.000 1 4717 1 chr2B.!!$F1 4716
1 TraesCS2B01G222100 chr2B 677976819 677978015 1196 False 1917.00 1917 95.580 3521 4717 1 chr2B.!!$F3 1196
2 TraesCS2B01G222100 chr2B 677979322 677980471 1149 True 1827.00 1827 95.325 3565 4717 1 chr2B.!!$R2 1152
3 TraesCS2B01G222100 chr2B 762352988 762354175 1187 True 1803.00 1803 94.005 3521 4717 1 chr2B.!!$R3 1196
4 TraesCS2B01G222100 chr2B 422188760 422189819 1059 False 1692.00 1692 95.484 3657 4717 1 chr2B.!!$F2 1060
5 TraesCS2B01G222100 chr2B 607342327 607343000 673 True 686.00 686 85.460 3 659 1 chr2B.!!$R1 656
6 TraesCS2B01G222100 chr2A 145445611 145448187 2576 True 3967.00 3967 94.472 782 3359 1 chr2A.!!$R1 2577
7 TraesCS2B01G222100 chr2A 757083284 757083949 665 True 632.00 632 84.195 3 662 1 chr2A.!!$R3 659
8 TraesCS2B01G222100 chr2A 572098193 572098862 669 True 627.00 627 83.780 1 662 1 chr2A.!!$R2 661
9 TraesCS2B01G222100 chr2A 656230519 656231072 553 False 531.00 531 84.425 1 549 1 chr2A.!!$F1 548
10 TraesCS2B01G222100 chr2D 154836554 154839237 2683 False 1957.55 3818 96.841 782 3366 2 chr2D.!!$F1 2584
11 TraesCS2B01G222100 chr6D 76066085 76067283 1198 True 1969.00 1969 96.333 3521 4717 1 chr6D.!!$R1 1196
12 TraesCS2B01G222100 chr6D 380703791 380704580 789 False 761.00 761 84.625 1 773 1 chr6D.!!$F2 772
13 TraesCS2B01G222100 chr6D 303986796 303987465 669 False 628.00 628 84.094 2 659 1 chr6D.!!$F1 657
14 TraesCS2B01G222100 chrUn 201220578 201221774 1196 False 1934.00 1934 95.830 3521 4717 1 chrUn.!!$F1 1196
15 TraesCS2B01G222100 chr7B 470293406 470294602 1196 True 1912.00 1912 95.496 3521 4717 1 chr7B.!!$R4 1196
16 TraesCS2B01G222100 chr7B 470242420 470243615 1195 True 1893.00 1893 95.246 3521 4717 1 chr7B.!!$R3 1196
17 TraesCS2B01G222100 chr7B 25661176 25662356 1180 True 1851.00 1851 94.825 3523 4717 1 chr7B.!!$R1 1194
18 TraesCS2B01G222100 chr6B 229143735 229144931 1196 False 1879.00 1879 95.000 3521 4717 1 chr6B.!!$F2 1196
19 TraesCS2B01G222100 chr6B 488842937 488843581 644 True 438.00 438 79.294 135 773 1 chr6B.!!$R2 638
20 TraesCS2B01G222100 chr1B 631822061 631823262 1201 False 1849.00 1849 94.527 3521 4717 1 chr1B.!!$F2 1196
21 TraesCS2B01G222100 chr7A 63572515 63573454 939 False 1352.00 1352 92.683 3521 4459 1 chr7A.!!$F1 938
22 TraesCS2B01G222100 chr4A 588590642 588591309 667 True 719.00 719 86.398 3 659 1 chr4A.!!$R1 656
23 TraesCS2B01G222100 chr6A 201654420 201655095 675 True 630.00 630 83.900 3 662 1 chr6A.!!$R1 659
24 TraesCS2B01G222100 chr5B 382572422 382573093 671 True 623.00 623 83.804 1 657 1 chr5B.!!$R1 656
25 TraesCS2B01G222100 chr4B 442973280 442973948 668 True 623.00 623 83.881 10 662 1 chr4B.!!$R1 652
26 TraesCS2B01G222100 chr4B 100402309 100402860 551 False 492.00 492 83.274 1 545 1 chr4B.!!$F1 544
27 TraesCS2B01G222100 chr3B 474417701 474418262 561 True 529.00 529 84.164 1 545 1 chr3B.!!$R1 544
28 TraesCS2B01G222100 chr4D 5796187 5796808 621 True 496.00 496 81.399 135 750 1 chr4D.!!$R1 615
29 TraesCS2B01G222100 chr7D 517310882 517311678 796 False 481.00 481 78.261 1 773 1 chr7D.!!$F1 772
30 TraesCS2B01G222100 chr5A 94307042 94307608 566 True 429.00 429 81.195 3 541 1 chr5A.!!$R1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 841 0.111704 CGTGCGTTCGAGTTGAGTTG 60.112 55.0 0.00 0.00 0.00 3.16 F
1963 2048 0.179111 CTCGTCCTTCGGCAGCAATA 60.179 55.0 0.00 0.00 40.32 1.90 F
3473 3647 0.251474 AGCTCCCTCAAAATGCTGCA 60.251 50.0 4.13 4.13 32.32 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2697 2782 0.032912 ATCAATGGGGATGTGCAGCA 60.033 50.00 0.0 0.0 0.0 4.41 R
3510 3684 0.034337 GGAGTTTGCGTACTGGTGGA 59.966 55.00 0.0 0.0 0.0 4.02 R
4383 4574 9.231297 ACACTGCACTCATTTACAAAATATAGT 57.769 29.63 0.0 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 113 2.835895 GCGGGAGGAGAGGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
108 125 4.450053 GAGAGGAGGACCAAATGAAGATG 58.550 47.826 0.00 0.00 38.94 2.90
177 195 3.450457 AGAAGAGGAAGCTCGACATCAAT 59.550 43.478 0.00 0.00 0.00 2.57
233 252 1.066908 CACCAATGCCGACACAAAAGT 59.933 47.619 0.00 0.00 0.00 2.66
244 263 3.541632 GACACAAAAGTCAAGGAGGTGA 58.458 45.455 0.00 0.00 38.40 4.02
291 312 1.338107 ACAACATGTCACCGGAGAGA 58.662 50.000 9.46 4.23 0.00 3.10
361 398 3.218453 CTGATCTAGGTGAGACATCGGT 58.782 50.000 0.00 0.00 36.87 4.69
395 432 1.202891 AGGACGGTCCTTTTTGAAGGG 60.203 52.381 23.90 0.00 46.91 3.95
416 453 4.954970 CTGGTGTGCCGGCCACTT 62.955 66.667 32.84 0.00 44.92 3.16
454 495 4.441792 ACAAAACCTGTCCATTTTGAAGC 58.558 39.130 14.50 0.00 44.85 3.86
467 508 1.740332 TTGAAGCCCGACTCGTGTGA 61.740 55.000 0.00 0.00 0.00 3.58
545 591 1.024579 CCGACCGCTGGCTTTATTGT 61.025 55.000 0.00 0.00 0.00 2.71
547 593 0.733150 GACCGCTGGCTTTATTGTCC 59.267 55.000 0.00 0.00 0.00 4.02
556 603 2.289002 GGCTTTATTGTCCGCATCAGAG 59.711 50.000 0.00 0.00 0.00 3.35
652 703 2.295629 TCAATTTTGCATGCACGAGGAA 59.704 40.909 22.58 8.98 0.00 3.36
694 755 1.944024 ACGCAAACTCAAATTCGGACA 59.056 42.857 0.00 0.00 0.00 4.02
702 763 4.836825 ACTCAAATTCGGACAGACATGAT 58.163 39.130 0.00 0.00 0.00 2.45
703 764 5.248640 ACTCAAATTCGGACAGACATGATT 58.751 37.500 0.00 0.00 0.00 2.57
721 784 4.468713 TGATTCCATTGTCACCTCAAACA 58.531 39.130 0.00 0.00 0.00 2.83
730 793 4.196193 TGTCACCTCAAACAGACGAAATT 58.804 39.130 0.00 0.00 33.83 1.82
742 805 5.632959 ACAGACGAAATTCAAACAAAACGA 58.367 33.333 0.00 0.00 0.00 3.85
766 830 1.620413 CCGTTTAGGGTCGTGCGTTC 61.620 60.000 0.00 0.00 35.97 3.95
773 837 1.659335 GGTCGTGCGTTCGAGTTGA 60.659 57.895 4.54 0.00 40.52 3.18
774 838 1.606350 GGTCGTGCGTTCGAGTTGAG 61.606 60.000 4.54 0.00 40.52 3.02
775 839 0.933509 GTCGTGCGTTCGAGTTGAGT 60.934 55.000 4.54 0.00 40.52 3.41
776 840 0.248743 TCGTGCGTTCGAGTTGAGTT 60.249 50.000 0.00 0.00 34.85 3.01
777 841 0.111704 CGTGCGTTCGAGTTGAGTTG 60.112 55.000 0.00 0.00 0.00 3.16
778 842 0.232303 GTGCGTTCGAGTTGAGTTGG 59.768 55.000 0.00 0.00 0.00 3.77
779 843 1.204312 GCGTTCGAGTTGAGTTGGC 59.796 57.895 0.00 0.00 0.00 4.52
780 844 1.860078 CGTTCGAGTTGAGTTGGCC 59.140 57.895 0.00 0.00 0.00 5.36
801 865 3.172575 CACTACCGACGTGCGCTG 61.173 66.667 9.73 3.37 39.11 5.18
818 882 2.554032 CGCTGAGTGGAAATTTTCTGGT 59.446 45.455 8.93 0.00 0.00 4.00
958 1022 1.693640 CCATGGAACCAAGAGCCCT 59.306 57.895 5.56 0.00 0.00 5.19
1133 1197 1.664302 GCGCCTTGTTTGCTTTCTCTC 60.664 52.381 0.00 0.00 0.00 3.20
1135 1199 1.956477 GCCTTGTTTGCTTTCTCTCCA 59.044 47.619 0.00 0.00 0.00 3.86
1150 1214 1.277273 TCTCCACCTCATCTGCTTGTG 59.723 52.381 0.00 0.00 0.00 3.33
1151 1215 0.321919 TCCACCTCATCTGCTTGTGC 60.322 55.000 0.00 0.00 40.20 4.57
1158 1222 1.927527 ATCTGCTTGTGCCCCTCCT 60.928 57.895 0.00 0.00 38.71 3.69
1234 1298 2.224495 GAGCTCTGCTTGTCGCCTCT 62.224 60.000 6.43 0.00 39.88 3.69
1331 1395 5.351465 CGCCTCTTCTTTCTGCTATAAAACA 59.649 40.000 0.00 0.00 0.00 2.83
1378 1463 1.133025 CATCCACCAAAATGCCTCGTC 59.867 52.381 0.00 0.00 0.00 4.20
1384 1469 1.021390 CAAAATGCCTCGTCTCCGCT 61.021 55.000 0.00 0.00 0.00 5.52
1392 1477 0.248296 CTCGTCTCCGCTACTGCTTC 60.248 60.000 0.00 0.00 36.97 3.86
1400 1485 1.406069 CCGCTACTGCTTCTCCATGTT 60.406 52.381 0.00 0.00 36.97 2.71
1401 1486 1.929836 CGCTACTGCTTCTCCATGTTC 59.070 52.381 0.00 0.00 36.97 3.18
1402 1487 2.417924 CGCTACTGCTTCTCCATGTTCT 60.418 50.000 0.00 0.00 36.97 3.01
1403 1488 3.604582 GCTACTGCTTCTCCATGTTCTT 58.395 45.455 0.00 0.00 36.03 2.52
1455 1540 1.528076 ATGGCTTGTGCACGGTGAA 60.528 52.632 13.29 0.00 41.91 3.18
1500 1585 2.556766 CTCCCTTTCCTCCTCTCCTTT 58.443 52.381 0.00 0.00 0.00 3.11
1531 1616 2.590575 CCAACAACGTCACGGCCT 60.591 61.111 0.35 0.00 0.00 5.19
1596 1681 2.607750 GTCAGGTGCTCCAGGGGA 60.608 66.667 7.70 0.00 35.89 4.81
1747 1832 3.365265 CCACGAGCCCAAGGTTGC 61.365 66.667 0.00 0.00 0.00 4.17
1784 1869 2.972505 CAACAACCTCAGCGGCGT 60.973 61.111 9.37 0.00 35.61 5.68
1791 1876 2.507992 CTCAGCGGCGTCCTCAAG 60.508 66.667 9.37 0.00 0.00 3.02
1797 1882 1.667830 CGGCGTCCTCAAGCTTTCA 60.668 57.895 0.00 0.00 0.00 2.69
1819 1904 1.194781 GCCTTCCCTGGTCACTCTGA 61.195 60.000 0.00 0.00 0.00 3.27
1870 1955 3.286751 AAGCATTGCGTGTGCCGT 61.287 55.556 2.38 0.00 43.50 5.68
1872 1957 2.731587 AAGCATTGCGTGTGCCGTTC 62.732 55.000 2.38 0.00 43.50 3.95
1873 1958 2.126888 CATTGCGTGTGCCGTTCC 60.127 61.111 0.00 0.00 41.78 3.62
1880 1965 0.878523 CGTGTGCCGTTCCTCAGAAA 60.879 55.000 0.00 0.00 32.58 2.52
1884 1969 1.264288 GTGCCGTTCCTCAGAAAGTTG 59.736 52.381 0.00 0.00 32.58 3.16
1893 1978 3.118920 TCCTCAGAAAGTTGAACGTGTCA 60.119 43.478 0.00 0.00 0.00 3.58
1929 2014 0.831711 GAGAGATCCCCAGCTCCCTC 60.832 65.000 0.00 0.00 35.45 4.30
1950 2035 2.417936 GGATTCCCGAGCTCGTCC 59.582 66.667 32.41 27.28 37.74 4.79
1963 2048 0.179111 CTCGTCCTTCGGCAGCAATA 60.179 55.000 0.00 0.00 40.32 1.90
1989 2074 1.303074 CTGCAGCAAGCCTCTTCCA 60.303 57.895 0.00 0.00 44.83 3.53
1997 2082 2.680339 GCAAGCCTCTTCCAAGATGTAC 59.320 50.000 0.00 0.00 33.93 2.90
1998 2083 3.274288 CAAGCCTCTTCCAAGATGTACC 58.726 50.000 0.00 0.00 33.93 3.34
2025 2110 2.592102 ACAATGCAGTGGAAGATGGT 57.408 45.000 19.57 0.00 0.00 3.55
2026 2111 3.719268 ACAATGCAGTGGAAGATGGTA 57.281 42.857 19.57 0.00 0.00 3.25
2027 2112 3.347216 ACAATGCAGTGGAAGATGGTAC 58.653 45.455 19.57 0.00 0.00 3.34
2028 2113 3.009473 ACAATGCAGTGGAAGATGGTACT 59.991 43.478 19.57 0.00 0.00 2.73
2029 2114 4.225042 ACAATGCAGTGGAAGATGGTACTA 59.775 41.667 19.57 0.00 0.00 1.82
2058 2143 0.317160 CTACCACTGGTGTCGCTCAA 59.683 55.000 11.32 0.00 36.19 3.02
2066 2151 1.751351 TGGTGTCGCTCAATCTCCTAG 59.249 52.381 0.00 0.00 0.00 3.02
2073 2158 1.850377 CTCAATCTCCTAGTGCAGCG 58.150 55.000 0.00 0.00 0.00 5.18
2103 2188 2.010582 CTAGTGGCAGTCCGAGCTCC 62.011 65.000 8.47 0.00 34.14 4.70
2125 2210 6.202331 TCCTCCAGTAATGGAAGATTCAGTA 58.798 40.000 13.78 0.00 37.55 2.74
2154 2239 4.626081 ACTGCACTCGTGGCCACC 62.626 66.667 29.95 15.85 0.00 4.61
2175 2260 1.443194 CATTGGCAACGCAGTGCTC 60.443 57.895 14.33 0.00 45.00 4.26
2180 2265 1.021390 GGCAACGCAGTGCTCATAGT 61.021 55.000 14.33 0.00 45.00 2.12
2188 2273 2.223688 GCAGTGCTCATAGTGATCTCGT 60.224 50.000 8.18 0.00 0.00 4.18
2193 2278 2.223923 GCTCATAGTGATCTCGTTGGCT 60.224 50.000 0.00 0.00 0.00 4.75
2202 2287 4.276183 GTGATCTCGTTGGCTATCTCTGTA 59.724 45.833 0.00 0.00 0.00 2.74
2212 2297 3.312828 GCTATCTCTGTAGCCATGTTCG 58.687 50.000 0.00 0.00 40.92 3.95
2247 2332 0.267356 AGCTGAGGCCCTCTAAGGAT 59.733 55.000 12.94 0.00 39.73 3.24
2261 2346 6.367983 CCTCTAAGGATGATTCCAAATCCAA 58.632 40.000 4.61 0.00 45.30 3.53
2610 2695 0.945813 GGCTGCTCGTCTACGACTAT 59.054 55.000 0.14 0.00 44.22 2.12
2697 2782 2.890311 TCAGCCGTGAATTTTCAATGGT 59.110 40.909 12.04 3.19 39.21 3.55
3284 3384 2.747396 TGTAGTATTTCGCGGGTGTT 57.253 45.000 6.13 0.00 0.00 3.32
3287 3387 0.322322 AGTATTTCGCGGGTGTTGGA 59.678 50.000 6.13 0.00 0.00 3.53
3366 3540 6.145535 GCTTTCAAGAACTGGATGTTAGTTG 58.854 40.000 0.00 0.00 38.42 3.16
3367 3541 6.238759 GCTTTCAAGAACTGGATGTTAGTTGT 60.239 38.462 0.00 0.00 38.42 3.32
3368 3542 7.041372 GCTTTCAAGAACTGGATGTTAGTTGTA 60.041 37.037 0.00 0.00 38.42 2.41
3369 3543 8.740123 TTTCAAGAACTGGATGTTAGTTGTAA 57.260 30.769 0.00 0.00 38.42 2.41
3370 3544 8.918202 TTCAAGAACTGGATGTTAGTTGTAAT 57.082 30.769 0.00 0.00 38.42 1.89
3371 3545 8.547967 TCAAGAACTGGATGTTAGTTGTAATC 57.452 34.615 0.00 0.00 38.42 1.75
3372 3546 7.606456 TCAAGAACTGGATGTTAGTTGTAATCC 59.394 37.037 0.00 0.00 38.42 3.01
3373 3547 7.016153 AGAACTGGATGTTAGTTGTAATCCA 57.984 36.000 3.40 3.40 44.90 3.41
3374 3548 7.458397 AGAACTGGATGTTAGTTGTAATCCAA 58.542 34.615 4.89 0.00 46.00 3.53
3375 3549 7.607991 AGAACTGGATGTTAGTTGTAATCCAAG 59.392 37.037 4.89 2.74 46.00 3.61
3376 3550 6.779860 ACTGGATGTTAGTTGTAATCCAAGT 58.220 36.000 4.89 3.26 46.00 3.16
3377 3551 7.231467 ACTGGATGTTAGTTGTAATCCAAGTT 58.769 34.615 4.89 0.00 46.00 2.66
3378 3552 7.174946 ACTGGATGTTAGTTGTAATCCAAGTTG 59.825 37.037 4.89 0.00 46.00 3.16
3379 3553 6.072175 TGGATGTTAGTTGTAATCCAAGTTGC 60.072 38.462 0.00 0.00 44.30 4.17
3380 3554 6.151144 GGATGTTAGTTGTAATCCAAGTTGCT 59.849 38.462 0.00 0.00 38.78 3.91
3381 3555 6.952773 TGTTAGTTGTAATCCAAGTTGCTT 57.047 33.333 0.00 0.00 37.82 3.91
3382 3556 8.630054 ATGTTAGTTGTAATCCAAGTTGCTTA 57.370 30.769 0.00 0.00 37.82 3.09
3383 3557 8.453238 TGTTAGTTGTAATCCAAGTTGCTTAA 57.547 30.769 0.00 0.00 37.82 1.85
3384 3558 8.904834 TGTTAGTTGTAATCCAAGTTGCTTAAA 58.095 29.630 0.00 0.00 37.82 1.52
3385 3559 9.177304 GTTAGTTGTAATCCAAGTTGCTTAAAC 57.823 33.333 0.00 5.72 37.82 2.01
3386 3560 6.745116 AGTTGTAATCCAAGTTGCTTAAACC 58.255 36.000 0.00 0.00 39.85 3.27
3387 3561 6.322712 AGTTGTAATCCAAGTTGCTTAAACCA 59.677 34.615 0.00 0.00 39.85 3.67
3388 3562 6.325919 TGTAATCCAAGTTGCTTAAACCAG 57.674 37.500 0.00 0.00 39.85 4.00
3389 3563 6.065374 TGTAATCCAAGTTGCTTAAACCAGA 58.935 36.000 0.00 0.00 39.85 3.86
3390 3564 6.719370 TGTAATCCAAGTTGCTTAAACCAGAT 59.281 34.615 0.00 0.00 39.85 2.90
3391 3565 5.904362 ATCCAAGTTGCTTAAACCAGATC 57.096 39.130 0.00 0.00 39.85 2.75
3392 3566 4.724399 TCCAAGTTGCTTAAACCAGATCA 58.276 39.130 0.00 0.00 39.85 2.92
3393 3567 5.136828 TCCAAGTTGCTTAAACCAGATCAA 58.863 37.500 0.00 0.00 39.85 2.57
3394 3568 5.774690 TCCAAGTTGCTTAAACCAGATCAAT 59.225 36.000 0.00 0.00 39.85 2.57
3395 3569 5.865552 CCAAGTTGCTTAAACCAGATCAATG 59.134 40.000 0.00 0.00 39.85 2.82
3396 3570 5.649782 AGTTGCTTAAACCAGATCAATGG 57.350 39.130 0.00 0.00 46.47 3.16
3397 3571 4.463891 AGTTGCTTAAACCAGATCAATGGG 59.536 41.667 6.01 0.00 45.25 4.00
3398 3572 4.314522 TGCTTAAACCAGATCAATGGGA 57.685 40.909 6.01 0.00 45.25 4.37
3399 3573 4.671831 TGCTTAAACCAGATCAATGGGAA 58.328 39.130 6.01 0.00 45.25 3.97
3400 3574 5.271598 TGCTTAAACCAGATCAATGGGAAT 58.728 37.500 6.01 0.00 45.25 3.01
3401 3575 5.127519 TGCTTAAACCAGATCAATGGGAATG 59.872 40.000 6.01 0.00 45.25 2.67
3402 3576 5.594926 CTTAAACCAGATCAATGGGAATGC 58.405 41.667 6.01 0.00 45.25 3.56
3403 3577 2.077687 ACCAGATCAATGGGAATGCC 57.922 50.000 6.01 0.00 45.25 4.40
3404 3578 1.572415 ACCAGATCAATGGGAATGCCT 59.428 47.619 6.01 0.00 45.25 4.75
3405 3579 1.961394 CCAGATCAATGGGAATGCCTG 59.039 52.381 0.00 0.00 36.64 4.85
3406 3580 1.961394 CAGATCAATGGGAATGCCTGG 59.039 52.381 0.00 0.00 0.00 4.45
3407 3581 1.854939 AGATCAATGGGAATGCCTGGA 59.145 47.619 0.00 0.00 0.00 3.86
3408 3582 1.959282 GATCAATGGGAATGCCTGGAC 59.041 52.381 0.00 0.00 0.00 4.02
3409 3583 0.394216 TCAATGGGAATGCCTGGACG 60.394 55.000 0.00 0.00 0.00 4.79
3410 3584 1.754234 AATGGGAATGCCTGGACGC 60.754 57.895 0.00 0.00 0.00 5.19
3411 3585 2.215451 AATGGGAATGCCTGGACGCT 62.215 55.000 0.00 0.00 0.00 5.07
3412 3586 2.044946 GGGAATGCCTGGACGCTT 60.045 61.111 0.00 0.00 0.00 4.68
3413 3587 1.223487 GGGAATGCCTGGACGCTTA 59.777 57.895 0.00 0.00 0.00 3.09
3414 3588 0.393808 GGGAATGCCTGGACGCTTAA 60.394 55.000 0.00 0.00 0.00 1.85
3415 3589 1.459450 GGAATGCCTGGACGCTTAAA 58.541 50.000 0.00 0.00 0.00 1.52
3416 3590 2.024414 GGAATGCCTGGACGCTTAAAT 58.976 47.619 0.00 0.00 0.00 1.40
3417 3591 2.033424 GGAATGCCTGGACGCTTAAATC 59.967 50.000 0.00 0.00 0.00 2.17
3418 3592 2.418368 ATGCCTGGACGCTTAAATCA 57.582 45.000 0.00 0.00 0.00 2.57
3419 3593 1.737838 TGCCTGGACGCTTAAATCAG 58.262 50.000 0.00 0.00 0.00 2.90
3420 3594 1.277842 TGCCTGGACGCTTAAATCAGA 59.722 47.619 0.00 0.00 0.00 3.27
3421 3595 2.092968 TGCCTGGACGCTTAAATCAGAT 60.093 45.455 0.00 0.00 0.00 2.90
3422 3596 2.545946 GCCTGGACGCTTAAATCAGATC 59.454 50.000 0.00 0.00 0.00 2.75
3423 3597 3.797039 CCTGGACGCTTAAATCAGATCA 58.203 45.455 0.00 0.00 0.00 2.92
3424 3598 4.191544 CCTGGACGCTTAAATCAGATCAA 58.808 43.478 0.00 0.00 0.00 2.57
3425 3599 4.818546 CCTGGACGCTTAAATCAGATCAAT 59.181 41.667 0.00 0.00 0.00 2.57
3426 3600 5.277683 CCTGGACGCTTAAATCAGATCAATG 60.278 44.000 0.00 0.00 0.00 2.82
3427 3601 4.576053 TGGACGCTTAAATCAGATCAATGG 59.424 41.667 0.00 0.00 0.00 3.16
3428 3602 4.023707 GGACGCTTAAATCAGATCAATGGG 60.024 45.833 0.00 0.00 0.00 4.00
3429 3603 4.780815 ACGCTTAAATCAGATCAATGGGA 58.219 39.130 0.00 0.00 0.00 4.37
3430 3604 4.576463 ACGCTTAAATCAGATCAATGGGAC 59.424 41.667 0.00 0.00 0.00 4.46
3431 3605 4.818546 CGCTTAAATCAGATCAATGGGACT 59.181 41.667 0.00 0.00 0.00 3.85
3432 3606 5.277683 CGCTTAAATCAGATCAATGGGACTG 60.278 44.000 0.00 0.00 0.00 3.51
3433 3607 5.009410 GCTTAAATCAGATCAATGGGACTGG 59.991 44.000 0.00 0.00 0.00 4.00
3434 3608 2.653234 ATCAGATCAATGGGACTGGC 57.347 50.000 0.00 0.00 0.00 4.85
3435 3609 1.588239 TCAGATCAATGGGACTGGCT 58.412 50.000 0.00 0.00 0.00 4.75
3436 3610 2.763039 TCAGATCAATGGGACTGGCTA 58.237 47.619 0.00 0.00 0.00 3.93
3437 3611 3.321039 TCAGATCAATGGGACTGGCTAT 58.679 45.455 0.00 0.00 0.00 2.97
3438 3612 4.492646 TCAGATCAATGGGACTGGCTATA 58.507 43.478 0.00 0.00 0.00 1.31
3439 3613 5.096521 TCAGATCAATGGGACTGGCTATAT 58.903 41.667 0.00 0.00 0.00 0.86
3440 3614 5.188555 TCAGATCAATGGGACTGGCTATATC 59.811 44.000 0.00 0.00 0.00 1.63
3441 3615 4.472833 AGATCAATGGGACTGGCTATATCC 59.527 45.833 0.00 0.00 0.00 2.59
3442 3616 3.597182 TCAATGGGACTGGCTATATCCA 58.403 45.455 0.00 0.00 33.87 3.41
3443 3617 3.327757 TCAATGGGACTGGCTATATCCAC 59.672 47.826 3.36 0.00 33.87 4.02
3444 3618 2.795291 TGGGACTGGCTATATCCACT 57.205 50.000 3.36 0.00 33.87 4.00
3445 3619 3.915346 TGGGACTGGCTATATCCACTA 57.085 47.619 3.36 0.00 33.87 2.74
3446 3620 4.207698 TGGGACTGGCTATATCCACTAA 57.792 45.455 3.36 0.00 33.87 2.24
3447 3621 4.562767 TGGGACTGGCTATATCCACTAAA 58.437 43.478 3.36 0.00 33.87 1.85
3448 3622 4.972568 TGGGACTGGCTATATCCACTAAAA 59.027 41.667 3.36 0.00 33.87 1.52
3449 3623 5.163237 TGGGACTGGCTATATCCACTAAAAC 60.163 44.000 3.36 0.00 33.87 2.43
3450 3624 5.071923 GGGACTGGCTATATCCACTAAAACT 59.928 44.000 3.36 0.00 33.87 2.66
3451 3625 6.224584 GGACTGGCTATATCCACTAAAACTC 58.775 44.000 0.00 0.00 32.35 3.01
3452 3626 6.176014 ACTGGCTATATCCACTAAAACTCC 57.824 41.667 0.00 0.00 31.74 3.85
3453 3627 5.665812 ACTGGCTATATCCACTAAAACTCCA 59.334 40.000 0.00 0.00 31.74 3.86
3454 3628 6.157994 ACTGGCTATATCCACTAAAACTCCAA 59.842 38.462 0.00 0.00 31.74 3.53
3455 3629 6.591935 TGGCTATATCCACTAAAACTCCAAG 58.408 40.000 0.00 0.00 0.00 3.61
3456 3630 5.470437 GGCTATATCCACTAAAACTCCAAGC 59.530 44.000 0.00 0.00 0.00 4.01
3457 3631 6.292150 GCTATATCCACTAAAACTCCAAGCT 58.708 40.000 0.00 0.00 0.00 3.74
3458 3632 6.425417 GCTATATCCACTAAAACTCCAAGCTC 59.575 42.308 0.00 0.00 0.00 4.09
3459 3633 3.418684 TCCACTAAAACTCCAAGCTCC 57.581 47.619 0.00 0.00 0.00 4.70
3460 3634 2.039879 TCCACTAAAACTCCAAGCTCCC 59.960 50.000 0.00 0.00 0.00 4.30
3461 3635 2.040412 CCACTAAAACTCCAAGCTCCCT 59.960 50.000 0.00 0.00 0.00 4.20
3462 3636 3.339141 CACTAAAACTCCAAGCTCCCTC 58.661 50.000 0.00 0.00 0.00 4.30
3463 3637 2.979678 ACTAAAACTCCAAGCTCCCTCA 59.020 45.455 0.00 0.00 0.00 3.86
3464 3638 3.394606 ACTAAAACTCCAAGCTCCCTCAA 59.605 43.478 0.00 0.00 0.00 3.02
3465 3639 3.312736 AAAACTCCAAGCTCCCTCAAA 57.687 42.857 0.00 0.00 0.00 2.69
3466 3640 3.312736 AAACTCCAAGCTCCCTCAAAA 57.687 42.857 0.00 0.00 0.00 2.44
3467 3641 3.532641 AACTCCAAGCTCCCTCAAAAT 57.467 42.857 0.00 0.00 0.00 1.82
3468 3642 2.800250 ACTCCAAGCTCCCTCAAAATG 58.200 47.619 0.00 0.00 0.00 2.32
3469 3643 1.475682 CTCCAAGCTCCCTCAAAATGC 59.524 52.381 0.00 0.00 0.00 3.56
3470 3644 1.076024 TCCAAGCTCCCTCAAAATGCT 59.924 47.619 0.00 0.00 35.30 3.79
3471 3645 1.203994 CCAAGCTCCCTCAAAATGCTG 59.796 52.381 0.00 0.00 33.96 4.41
3472 3646 0.893447 AAGCTCCCTCAAAATGCTGC 59.107 50.000 0.00 0.00 33.96 5.25
3473 3647 0.251474 AGCTCCCTCAAAATGCTGCA 60.251 50.000 4.13 4.13 32.32 4.41
3474 3648 0.822164 GCTCCCTCAAAATGCTGCAT 59.178 50.000 9.81 9.81 0.00 3.96
3475 3649 1.206371 GCTCCCTCAAAATGCTGCATT 59.794 47.619 21.48 21.48 35.39 3.56
3476 3650 2.888594 CTCCCTCAAAATGCTGCATTG 58.111 47.619 26.87 17.68 34.04 2.82
3477 3651 2.232941 CTCCCTCAAAATGCTGCATTGT 59.767 45.455 26.87 19.85 34.04 2.71
3478 3652 2.028839 TCCCTCAAAATGCTGCATTGTG 60.029 45.455 30.76 30.76 39.63 3.33
3479 3653 2.343101 CCTCAAAATGCTGCATTGTGG 58.657 47.619 33.67 25.54 39.00 4.17
3480 3654 2.289195 CCTCAAAATGCTGCATTGTGGT 60.289 45.455 33.67 16.35 39.00 4.16
3481 3655 2.734606 CTCAAAATGCTGCATTGTGGTG 59.265 45.455 33.67 25.29 39.00 4.17
3482 3656 1.195900 CAAAATGCTGCATTGTGGTGC 59.804 47.619 29.56 0.00 45.25 5.01
3488 3662 2.577644 GCATTGTGGTGCATCGCG 60.578 61.111 5.96 0.00 44.43 5.87
3489 3663 2.100797 CATTGTGGTGCATCGCGG 59.899 61.111 6.13 0.00 0.00 6.46
3490 3664 2.359850 ATTGTGGTGCATCGCGGT 60.360 55.556 6.13 0.00 0.00 5.68
3491 3665 1.971167 ATTGTGGTGCATCGCGGTT 60.971 52.632 6.13 0.00 0.00 4.44
3492 3666 2.198906 ATTGTGGTGCATCGCGGTTG 62.199 55.000 6.13 5.88 0.00 3.77
3493 3667 4.101790 GTGGTGCATCGCGGTTGG 62.102 66.667 6.13 0.00 0.00 3.77
3494 3668 4.634703 TGGTGCATCGCGGTTGGT 62.635 61.111 6.13 0.00 0.00 3.67
3495 3669 4.101790 GGTGCATCGCGGTTGGTG 62.102 66.667 6.13 0.00 0.00 4.17
3496 3670 3.047280 GTGCATCGCGGTTGGTGA 61.047 61.111 6.13 0.00 39.97 4.02
3497 3671 2.741985 TGCATCGCGGTTGGTGAG 60.742 61.111 6.13 0.00 38.83 3.51
3498 3672 2.434185 GCATCGCGGTTGGTGAGA 60.434 61.111 6.13 0.00 38.83 3.27
3499 3673 2.456119 GCATCGCGGTTGGTGAGAG 61.456 63.158 6.13 0.00 38.83 3.20
3500 3674 1.811266 CATCGCGGTTGGTGAGAGG 60.811 63.158 6.13 0.00 38.83 3.69
3501 3675 2.283529 ATCGCGGTTGGTGAGAGGT 61.284 57.895 6.13 0.00 38.83 3.85
3502 3676 2.507110 ATCGCGGTTGGTGAGAGGTG 62.507 60.000 6.13 0.00 38.83 4.00
3503 3677 3.050275 GCGGTTGGTGAGAGGTGC 61.050 66.667 0.00 0.00 0.00 5.01
3504 3678 2.743718 CGGTTGGTGAGAGGTGCT 59.256 61.111 0.00 0.00 0.00 4.40
3505 3679 1.071471 CGGTTGGTGAGAGGTGCTT 59.929 57.895 0.00 0.00 0.00 3.91
3506 3680 1.230635 CGGTTGGTGAGAGGTGCTTG 61.231 60.000 0.00 0.00 0.00 4.01
3507 3681 0.890996 GGTTGGTGAGAGGTGCTTGG 60.891 60.000 0.00 0.00 0.00 3.61
3508 3682 0.890996 GTTGGTGAGAGGTGCTTGGG 60.891 60.000 0.00 0.00 0.00 4.12
3509 3683 2.360475 GGTGAGAGGTGCTTGGGC 60.360 66.667 0.00 0.00 39.26 5.36
3510 3684 2.753029 GTGAGAGGTGCTTGGGCT 59.247 61.111 0.00 0.00 39.59 5.19
3511 3685 1.376553 GTGAGAGGTGCTTGGGCTC 60.377 63.158 0.00 0.00 39.59 4.70
3517 3691 2.674380 GTGCTTGGGCTCCACCAG 60.674 66.667 0.00 0.00 42.47 4.00
3518 3692 3.177884 TGCTTGGGCTCCACCAGT 61.178 61.111 0.00 0.00 42.47 4.00
3519 3693 1.845664 TGCTTGGGCTCCACCAGTA 60.846 57.895 0.00 0.00 42.47 2.74
3589 3770 6.057533 CACCTTCCACATGCTTTATGATCTA 58.942 40.000 0.00 0.00 39.21 1.98
3683 3864 5.594725 TCAATGTCAGACTAGTAGGATCCAC 59.405 44.000 15.82 10.22 0.00 4.02
3701 3882 2.643551 CACGTCAGGGAAAGGCAATAT 58.356 47.619 0.00 0.00 0.00 1.28
3749 3932 2.034124 GCAGCATCTCTCCTCTCTCTT 58.966 52.381 0.00 0.00 0.00 2.85
4008 4194 8.961294 ATTGAAATGATTGAAACACTTTTCCA 57.039 26.923 0.00 0.00 40.55 3.53
4194 4383 8.609176 TGTAGTGTGTTTTCTAATGAGTGAAAC 58.391 33.333 5.41 5.41 32.72 2.78
4383 4574 6.831353 TCTGAAACTAGTGAAATGGGTGAAAA 59.169 34.615 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.040067 CGCACTTCCTTTTGGCTCAC 60.040 55.000 0.00 0.00 40.12 3.51
132 149 0.107017 CGGCCTCCTCCATGTCAAAT 60.107 55.000 0.00 0.00 0.00 2.32
177 195 1.004560 CTTGAGTTGAGCGGCCTCA 60.005 57.895 0.00 0.00 46.03 3.86
233 252 0.888619 CGCTAGTGTCACCTCCTTGA 59.111 55.000 0.00 0.00 0.00 3.02
244 263 2.163613 TGACGATCATCAACGCTAGTGT 59.836 45.455 2.24 2.24 0.00 3.55
361 398 4.770362 TCCTCGGGGCCATCGTGA 62.770 66.667 17.45 12.48 0.00 4.35
416 453 3.959975 GTCGCCGGCAACAAAGCA 61.960 61.111 28.98 0.00 35.83 3.91
545 591 1.257743 GGCCTATACTCTGATGCGGA 58.742 55.000 0.00 0.00 0.00 5.54
547 593 0.734253 GCGGCCTATACTCTGATGCG 60.734 60.000 0.00 0.00 0.00 4.73
581 628 2.813908 GCACTAGTTCACGCCGGG 60.814 66.667 2.18 0.00 0.00 5.73
613 660 9.762933 CAAAATTGAGAAACCAAGGATTTAAGA 57.237 29.630 0.00 0.00 0.00 2.10
669 730 0.951558 AATTTGAGTTTGCGTCGGCT 59.048 45.000 0.00 0.00 40.82 5.52
694 755 4.019051 TGAGGTGACAATGGAATCATGTCT 60.019 41.667 12.10 0.00 35.00 3.41
702 763 3.882888 GTCTGTTTGAGGTGACAATGGAA 59.117 43.478 0.00 0.00 0.00 3.53
703 764 3.476552 GTCTGTTTGAGGTGACAATGGA 58.523 45.455 0.00 0.00 0.00 3.41
721 784 5.226360 CGTTCGTTTTGTTTGAATTTCGTCT 59.774 36.000 0.00 0.00 0.00 4.18
730 793 1.731160 ACGGACGTTCGTTTTGTTTGA 59.269 42.857 18.05 0.00 40.85 2.69
742 805 0.318955 CACGACCCTAAACGGACGTT 60.319 55.000 3.99 3.99 41.12 3.99
753 816 2.853290 AACTCGAACGCACGACCCT 61.853 57.895 0.00 0.00 37.37 4.34
766 830 3.777925 CGCGGCCAACTCAACTCG 61.778 66.667 2.24 0.00 0.00 4.18
790 854 4.700365 TCCACTCAGCGCACGTCG 62.700 66.667 11.47 0.00 42.12 5.12
794 858 2.030805 AGAAAATTTCCACTCAGCGCAC 60.031 45.455 11.47 0.00 0.00 5.34
801 865 3.496331 TGGGACCAGAAAATTTCCACTC 58.504 45.455 1.57 0.00 0.00 3.51
958 1022 4.467795 AGATGATCGAAAAGTGAGGGAGAA 59.532 41.667 0.00 0.00 0.00 2.87
1133 1197 1.310933 GGCACAAGCAGATGAGGTGG 61.311 60.000 0.00 0.00 44.61 4.61
1135 1199 1.001641 GGGCACAAGCAGATGAGGT 60.002 57.895 0.00 0.00 44.61 3.85
1150 1214 2.766229 GAGGACAGGAGGAGGGGC 60.766 72.222 0.00 0.00 0.00 5.80
1151 1215 2.041405 GGAGGACAGGAGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
1234 1298 2.235891 TCTCAACTGTAGAAGCGTGGA 58.764 47.619 0.00 0.00 0.00 4.02
1313 1377 7.994425 TGGATGTGTTTTATAGCAGAAAGAA 57.006 32.000 0.00 0.00 0.00 2.52
1331 1395 4.403752 TCTCGACTGATGAAGATTGGATGT 59.596 41.667 0.00 0.00 0.00 3.06
1384 1469 3.055094 GGGAAGAACATGGAGAAGCAGTA 60.055 47.826 0.00 0.00 0.00 2.74
1392 1477 0.179000 CGAGGGGGAAGAACATGGAG 59.821 60.000 0.00 0.00 0.00 3.86
1400 1485 0.397254 GAGGATCACGAGGGGGAAGA 60.397 60.000 0.00 0.00 33.17 2.87
1401 1486 1.403687 GGAGGATCACGAGGGGGAAG 61.404 65.000 0.00 0.00 36.25 3.46
1402 1487 1.382695 GGAGGATCACGAGGGGGAA 60.383 63.158 0.00 0.00 36.25 3.97
1403 1488 2.282446 GGAGGATCACGAGGGGGA 59.718 66.667 0.00 0.00 36.25 4.81
1475 1560 1.439143 AGAGGAGGAAAGGGAGGTCTT 59.561 52.381 0.00 0.00 0.00 3.01
1476 1561 1.007842 GAGAGGAGGAAAGGGAGGTCT 59.992 57.143 0.00 0.00 0.00 3.85
1500 1585 1.447099 TGTTGGGGTTGTAGGCCTTA 58.553 50.000 12.58 0.00 0.00 2.69
1531 1616 3.319198 GCCGACCCAGGTCTCCAA 61.319 66.667 14.69 0.00 42.54 3.53
1760 1845 0.890996 GCTGAGGTTGTTGTGGGAGG 60.891 60.000 0.00 0.00 0.00 4.30
1784 1869 0.767375 AGGCAGTGAAAGCTTGAGGA 59.233 50.000 0.00 0.00 0.00 3.71
1791 1876 1.246737 CCAGGGAAGGCAGTGAAAGC 61.247 60.000 0.00 0.00 0.00 3.51
1797 1882 1.462238 AGTGACCAGGGAAGGCAGT 60.462 57.895 0.00 0.00 0.00 4.40
1819 1904 0.322975 AATCCGTTGTGCTCTGCTCT 59.677 50.000 0.00 0.00 0.00 4.09
1863 1948 0.468226 ACTTTCTGAGGAACGGCACA 59.532 50.000 0.00 0.00 0.00 4.57
1864 1949 1.264288 CAACTTTCTGAGGAACGGCAC 59.736 52.381 0.00 0.00 0.00 5.01
1870 1955 3.869065 ACACGTTCAACTTTCTGAGGAA 58.131 40.909 0.00 0.00 0.00 3.36
1872 1957 3.194861 TGACACGTTCAACTTTCTGAGG 58.805 45.455 0.00 0.00 0.00 3.86
1873 1958 4.330074 ACTTGACACGTTCAACTTTCTGAG 59.670 41.667 8.47 1.70 39.45 3.35
1880 1965 4.201783 GCTTGTTACTTGACACGTTCAACT 60.202 41.667 8.47 4.43 39.45 3.16
1884 1969 3.361724 CGAGCTTGTTACTTGACACGTTC 60.362 47.826 0.00 0.00 0.00 3.95
1893 1978 1.884579 TCTCCGACGAGCTTGTTACTT 59.115 47.619 8.34 0.00 35.94 2.24
1900 1985 1.104577 GGGATCTCTCCGACGAGCTT 61.105 60.000 0.00 0.00 43.11 3.74
1950 2035 2.665537 GAGATCGATATTGCTGCCGAAG 59.334 50.000 0.00 0.00 34.59 3.79
1963 2048 0.532417 GGCTTGCTGCAGAGATCGAT 60.532 55.000 20.43 0.00 45.15 3.59
1989 2074 4.339247 GCATTGTAAGCATGGGTACATCTT 59.661 41.667 0.00 0.00 34.35 2.40
1997 2082 1.135527 CCACTGCATTGTAAGCATGGG 59.864 52.381 3.14 0.00 41.82 4.00
1998 2083 2.093890 TCCACTGCATTGTAAGCATGG 58.906 47.619 3.14 0.00 41.82 3.66
2025 2110 4.161565 CCAGTGGTAGCATTTGAGGTAGTA 59.838 45.833 0.00 0.00 0.00 1.82
2026 2111 3.055094 CCAGTGGTAGCATTTGAGGTAGT 60.055 47.826 0.00 0.00 0.00 2.73
2027 2112 3.055094 ACCAGTGGTAGCATTTGAGGTAG 60.055 47.826 14.87 0.00 32.11 3.18
2028 2113 2.910319 ACCAGTGGTAGCATTTGAGGTA 59.090 45.455 14.87 0.00 32.11 3.08
2029 2114 1.705186 ACCAGTGGTAGCATTTGAGGT 59.295 47.619 14.87 0.00 32.11 3.85
2058 2143 1.186200 TTGTCGCTGCACTAGGAGAT 58.814 50.000 0.00 0.00 34.74 2.75
2066 2151 0.798776 AGCTGTATTTGTCGCTGCAC 59.201 50.000 0.00 0.00 0.00 4.57
2154 2239 4.041917 ACTGCGTTGCCAATGCCG 62.042 61.111 18.42 14.59 42.76 5.69
2166 2251 2.392821 GAGATCACTATGAGCACTGCG 58.607 52.381 0.00 0.00 34.77 5.18
2175 2260 5.182950 AGAGATAGCCAACGAGATCACTATG 59.817 44.000 0.00 0.00 0.00 2.23
2180 2265 3.291584 ACAGAGATAGCCAACGAGATCA 58.708 45.455 0.00 0.00 0.00 2.92
2193 2278 4.207955 AGACGAACATGGCTACAGAGATA 58.792 43.478 0.00 0.00 0.00 1.98
2212 2297 5.108517 CCTCAGCTTTCTTCTCATGTAGAC 58.891 45.833 0.00 0.00 32.51 2.59
2247 2332 1.136695 GCCGCATTGGATTTGGAATCA 59.863 47.619 3.39 0.00 42.00 2.57
2697 2782 0.032912 ATCAATGGGGATGTGCAGCA 60.033 50.000 0.00 0.00 0.00 4.41
2729 2817 0.511221 CTGTAAACAGCCCGTCAACG 59.489 55.000 0.00 0.00 37.15 4.10
2742 2830 2.349755 GCCGCCTCCACCTGTAAA 59.650 61.111 0.00 0.00 0.00 2.01
2819 2907 3.554337 GGAACGTGTGGATGTAGTTGAGT 60.554 47.826 0.00 0.00 0.00 3.41
3284 3384 3.440173 GCAAGAAGAAATTCCGTGATCCA 59.560 43.478 0.00 0.00 0.00 3.41
3287 3387 5.464168 CAAAGCAAGAAGAAATTCCGTGAT 58.536 37.500 0.00 0.00 0.00 3.06
3366 3540 6.569179 TCTGGTTTAAGCAACTTGGATTAC 57.431 37.500 0.00 0.00 35.46 1.89
3367 3541 6.945435 TGATCTGGTTTAAGCAACTTGGATTA 59.055 34.615 0.00 0.00 35.46 1.75
3368 3542 5.774690 TGATCTGGTTTAAGCAACTTGGATT 59.225 36.000 0.00 0.00 35.46 3.01
3369 3543 5.324409 TGATCTGGTTTAAGCAACTTGGAT 58.676 37.500 0.00 0.00 35.46 3.41
3370 3544 4.724399 TGATCTGGTTTAAGCAACTTGGA 58.276 39.130 0.00 0.00 35.46 3.53
3371 3545 5.452078 TTGATCTGGTTTAAGCAACTTGG 57.548 39.130 0.00 0.00 35.46 3.61
3372 3546 5.865552 CCATTGATCTGGTTTAAGCAACTTG 59.134 40.000 0.00 0.00 35.46 3.16
3373 3547 5.047092 CCCATTGATCTGGTTTAAGCAACTT 60.047 40.000 0.00 0.00 35.46 2.66
3374 3548 4.463891 CCCATTGATCTGGTTTAAGCAACT 59.536 41.667 0.00 0.00 35.46 3.16
3375 3549 4.462483 TCCCATTGATCTGGTTTAAGCAAC 59.538 41.667 0.00 0.00 34.23 4.17
3376 3550 4.671831 TCCCATTGATCTGGTTTAAGCAA 58.328 39.130 0.00 0.00 34.23 3.91
3377 3551 4.314522 TCCCATTGATCTGGTTTAAGCA 57.685 40.909 0.00 0.00 34.23 3.91
3378 3552 5.594926 CATTCCCATTGATCTGGTTTAAGC 58.405 41.667 0.00 0.00 34.23 3.09
3379 3553 5.452356 GGCATTCCCATTGATCTGGTTTAAG 60.452 44.000 0.00 0.00 34.23 1.85
3380 3554 4.405358 GGCATTCCCATTGATCTGGTTTAA 59.595 41.667 0.00 0.00 34.23 1.52
3381 3555 3.960102 GGCATTCCCATTGATCTGGTTTA 59.040 43.478 0.00 0.00 34.23 2.01
3382 3556 2.767960 GGCATTCCCATTGATCTGGTTT 59.232 45.455 0.00 0.00 34.23 3.27
3383 3557 2.023695 AGGCATTCCCATTGATCTGGTT 60.024 45.455 0.00 0.00 34.23 3.67
3384 3558 1.572415 AGGCATTCCCATTGATCTGGT 59.428 47.619 0.00 0.00 34.23 4.00
3385 3559 1.961394 CAGGCATTCCCATTGATCTGG 59.039 52.381 0.00 0.00 35.39 3.86
3386 3560 1.961394 CCAGGCATTCCCATTGATCTG 59.039 52.381 0.00 0.00 35.39 2.90
3387 3561 1.854939 TCCAGGCATTCCCATTGATCT 59.145 47.619 0.00 0.00 35.39 2.75
3388 3562 1.959282 GTCCAGGCATTCCCATTGATC 59.041 52.381 0.00 0.00 35.39 2.92
3389 3563 1.751733 CGTCCAGGCATTCCCATTGAT 60.752 52.381 0.00 0.00 35.39 2.57
3390 3564 0.394216 CGTCCAGGCATTCCCATTGA 60.394 55.000 0.00 0.00 35.39 2.57
3391 3565 2.008268 GCGTCCAGGCATTCCCATTG 62.008 60.000 0.00 0.00 35.39 2.82
3392 3566 1.754234 GCGTCCAGGCATTCCCATT 60.754 57.895 0.00 0.00 35.39 3.16
3393 3567 2.124151 GCGTCCAGGCATTCCCAT 60.124 61.111 0.00 0.00 35.39 4.00
3394 3568 1.558167 TAAGCGTCCAGGCATTCCCA 61.558 55.000 0.00 0.00 35.39 4.37
3395 3569 0.393808 TTAAGCGTCCAGGCATTCCC 60.394 55.000 0.00 0.00 34.64 3.97
3396 3570 1.459450 TTTAAGCGTCCAGGCATTCC 58.541 50.000 0.00 0.00 34.64 3.01
3397 3571 2.682856 TGATTTAAGCGTCCAGGCATTC 59.317 45.455 0.00 0.00 34.64 2.67
3398 3572 2.684881 CTGATTTAAGCGTCCAGGCATT 59.315 45.455 0.00 0.00 34.64 3.56
3399 3573 2.092968 TCTGATTTAAGCGTCCAGGCAT 60.093 45.455 0.00 0.00 34.64 4.40
3400 3574 1.277842 TCTGATTTAAGCGTCCAGGCA 59.722 47.619 0.00 0.00 34.64 4.75
3401 3575 2.024176 TCTGATTTAAGCGTCCAGGC 57.976 50.000 0.00 0.00 0.00 4.85
3402 3576 3.797039 TGATCTGATTTAAGCGTCCAGG 58.203 45.455 0.00 0.00 0.00 4.45
3403 3577 5.277683 CCATTGATCTGATTTAAGCGTCCAG 60.278 44.000 0.00 0.00 0.00 3.86
3404 3578 4.576053 CCATTGATCTGATTTAAGCGTCCA 59.424 41.667 0.00 0.00 0.00 4.02
3405 3579 4.023707 CCCATTGATCTGATTTAAGCGTCC 60.024 45.833 0.00 0.00 0.00 4.79
3406 3580 4.816385 TCCCATTGATCTGATTTAAGCGTC 59.184 41.667 0.00 0.00 0.00 5.19
3407 3581 4.576463 GTCCCATTGATCTGATTTAAGCGT 59.424 41.667 0.00 0.00 0.00 5.07
3408 3582 4.818546 AGTCCCATTGATCTGATTTAAGCG 59.181 41.667 0.00 0.00 0.00 4.68
3409 3583 5.009410 CCAGTCCCATTGATCTGATTTAAGC 59.991 44.000 0.00 0.00 0.00 3.09
3410 3584 5.009410 GCCAGTCCCATTGATCTGATTTAAG 59.991 44.000 0.00 0.00 0.00 1.85
3411 3585 4.889409 GCCAGTCCCATTGATCTGATTTAA 59.111 41.667 0.00 0.00 0.00 1.52
3412 3586 4.166725 AGCCAGTCCCATTGATCTGATTTA 59.833 41.667 0.00 0.00 0.00 1.40
3413 3587 3.053095 AGCCAGTCCCATTGATCTGATTT 60.053 43.478 0.00 0.00 0.00 2.17
3414 3588 2.512896 AGCCAGTCCCATTGATCTGATT 59.487 45.455 0.00 0.00 0.00 2.57
3415 3589 2.133520 AGCCAGTCCCATTGATCTGAT 58.866 47.619 0.00 0.00 0.00 2.90
3416 3590 1.588239 AGCCAGTCCCATTGATCTGA 58.412 50.000 0.00 0.00 0.00 3.27
3417 3591 3.784511 ATAGCCAGTCCCATTGATCTG 57.215 47.619 0.00 0.00 0.00 2.90
3418 3592 4.472833 GGATATAGCCAGTCCCATTGATCT 59.527 45.833 1.04 0.00 0.00 2.75
3419 3593 4.225942 TGGATATAGCCAGTCCCATTGATC 59.774 45.833 5.37 0.00 33.10 2.92
3420 3594 4.018960 GTGGATATAGCCAGTCCCATTGAT 60.019 45.833 10.71 0.00 38.95 2.57
3421 3595 3.327757 GTGGATATAGCCAGTCCCATTGA 59.672 47.826 10.71 0.00 38.95 2.57
3422 3596 3.328931 AGTGGATATAGCCAGTCCCATTG 59.671 47.826 10.71 0.00 36.94 2.82
3423 3597 3.602608 AGTGGATATAGCCAGTCCCATT 58.397 45.455 10.71 0.00 36.94 3.16
3424 3598 3.282135 AGTGGATATAGCCAGTCCCAT 57.718 47.619 10.71 0.00 36.94 4.00
3425 3599 2.795291 AGTGGATATAGCCAGTCCCA 57.205 50.000 10.71 0.00 36.94 4.37
3426 3600 5.071923 AGTTTTAGTGGATATAGCCAGTCCC 59.928 44.000 20.49 3.92 40.69 4.46
3427 3601 6.176014 AGTTTTAGTGGATATAGCCAGTCC 57.824 41.667 20.49 4.30 40.69 3.85
3428 3602 6.183360 TGGAGTTTTAGTGGATATAGCCAGTC 60.183 42.308 20.49 6.88 40.69 3.51
3429 3603 5.665812 TGGAGTTTTAGTGGATATAGCCAGT 59.334 40.000 20.68 20.68 43.78 4.00
3430 3604 6.174720 TGGAGTTTTAGTGGATATAGCCAG 57.825 41.667 10.71 0.00 38.95 4.85
3431 3605 6.569127 TTGGAGTTTTAGTGGATATAGCCA 57.431 37.500 5.37 5.37 35.02 4.75
3432 3606 5.470437 GCTTGGAGTTTTAGTGGATATAGCC 59.530 44.000 0.00 0.00 0.00 3.93
3433 3607 6.292150 AGCTTGGAGTTTTAGTGGATATAGC 58.708 40.000 0.00 0.00 0.00 2.97
3434 3608 6.931840 GGAGCTTGGAGTTTTAGTGGATATAG 59.068 42.308 0.00 0.00 0.00 1.31
3435 3609 6.183361 GGGAGCTTGGAGTTTTAGTGGATATA 60.183 42.308 0.00 0.00 0.00 0.86
3436 3610 5.398012 GGGAGCTTGGAGTTTTAGTGGATAT 60.398 44.000 0.00 0.00 0.00 1.63
3437 3611 4.080526 GGGAGCTTGGAGTTTTAGTGGATA 60.081 45.833 0.00 0.00 0.00 2.59
3438 3612 3.308473 GGGAGCTTGGAGTTTTAGTGGAT 60.308 47.826 0.00 0.00 0.00 3.41
3439 3613 2.039879 GGGAGCTTGGAGTTTTAGTGGA 59.960 50.000 0.00 0.00 0.00 4.02
3440 3614 2.040412 AGGGAGCTTGGAGTTTTAGTGG 59.960 50.000 0.00 0.00 0.00 4.00
3441 3615 3.244561 TGAGGGAGCTTGGAGTTTTAGTG 60.245 47.826 0.00 0.00 0.00 2.74
3442 3616 2.979678 TGAGGGAGCTTGGAGTTTTAGT 59.020 45.455 0.00 0.00 0.00 2.24
3443 3617 3.703001 TGAGGGAGCTTGGAGTTTTAG 57.297 47.619 0.00 0.00 0.00 1.85
3444 3618 4.447138 TTTGAGGGAGCTTGGAGTTTTA 57.553 40.909 0.00 0.00 0.00 1.52
3445 3619 3.312736 TTTGAGGGAGCTTGGAGTTTT 57.687 42.857 0.00 0.00 0.00 2.43
3446 3620 3.312736 TTTTGAGGGAGCTTGGAGTTT 57.687 42.857 0.00 0.00 0.00 2.66
3447 3621 3.160269 CATTTTGAGGGAGCTTGGAGTT 58.840 45.455 0.00 0.00 0.00 3.01
3448 3622 2.800250 CATTTTGAGGGAGCTTGGAGT 58.200 47.619 0.00 0.00 0.00 3.85
3449 3623 1.475682 GCATTTTGAGGGAGCTTGGAG 59.524 52.381 0.00 0.00 0.00 3.86
3450 3624 1.076024 AGCATTTTGAGGGAGCTTGGA 59.924 47.619 0.00 0.00 29.98 3.53
3451 3625 1.203994 CAGCATTTTGAGGGAGCTTGG 59.796 52.381 0.00 0.00 32.35 3.61
3452 3626 1.403780 GCAGCATTTTGAGGGAGCTTG 60.404 52.381 0.00 0.00 32.35 4.01
3453 3627 0.893447 GCAGCATTTTGAGGGAGCTT 59.107 50.000 0.00 0.00 32.35 3.74
3454 3628 0.251474 TGCAGCATTTTGAGGGAGCT 60.251 50.000 0.00 0.00 35.63 4.09
3455 3629 0.822164 ATGCAGCATTTTGAGGGAGC 59.178 50.000 0.52 0.00 0.00 4.70
3456 3630 2.232941 ACAATGCAGCATTTTGAGGGAG 59.767 45.455 18.48 7.05 31.05 4.30
3457 3631 2.028839 CACAATGCAGCATTTTGAGGGA 60.029 45.455 24.38 0.00 34.59 4.20
3458 3632 2.343101 CACAATGCAGCATTTTGAGGG 58.657 47.619 24.38 12.63 34.59 4.30
3459 3633 2.289195 ACCACAATGCAGCATTTTGAGG 60.289 45.455 28.52 23.36 34.59 3.86
3460 3634 2.734606 CACCACAATGCAGCATTTTGAG 59.265 45.455 28.52 21.43 34.59 3.02
3461 3635 2.756829 CACCACAATGCAGCATTTTGA 58.243 42.857 28.52 0.00 34.59 2.69
3462 3636 1.195900 GCACCACAATGCAGCATTTTG 59.804 47.619 22.50 22.50 45.39 2.44
3463 3637 1.515081 GCACCACAATGCAGCATTTT 58.485 45.000 18.48 9.59 45.39 1.82
3464 3638 3.220447 GCACCACAATGCAGCATTT 57.780 47.368 18.48 7.37 45.39 2.32
3471 3645 2.577644 CGCGATGCACCACAATGC 60.578 61.111 0.00 0.00 46.32 3.56
3472 3646 2.100797 CCGCGATGCACCACAATG 59.899 61.111 8.23 0.00 0.00 2.82
3473 3647 1.971167 AACCGCGATGCACCACAAT 60.971 52.632 8.23 0.00 0.00 2.71
3474 3648 2.593148 AACCGCGATGCACCACAA 60.593 55.556 8.23 0.00 0.00 3.33
3475 3649 3.353029 CAACCGCGATGCACCACA 61.353 61.111 8.23 0.00 0.00 4.17
3476 3650 4.101790 CCAACCGCGATGCACCAC 62.102 66.667 8.23 0.00 0.00 4.16
3477 3651 4.634703 ACCAACCGCGATGCACCA 62.635 61.111 8.23 0.00 0.00 4.17
3478 3652 4.101790 CACCAACCGCGATGCACC 62.102 66.667 8.23 0.00 0.00 5.01
3479 3653 3.027170 CTCACCAACCGCGATGCAC 62.027 63.158 8.23 0.00 0.00 4.57
3480 3654 2.741985 CTCACCAACCGCGATGCA 60.742 61.111 8.23 0.00 0.00 3.96
3481 3655 2.434185 TCTCACCAACCGCGATGC 60.434 61.111 8.23 0.00 0.00 3.91
3482 3656 1.811266 CCTCTCACCAACCGCGATG 60.811 63.158 8.23 6.24 0.00 3.84
3483 3657 2.283529 ACCTCTCACCAACCGCGAT 61.284 57.895 8.23 0.00 0.00 4.58
3484 3658 2.915659 ACCTCTCACCAACCGCGA 60.916 61.111 8.23 0.00 0.00 5.87
3485 3659 2.738521 CACCTCTCACCAACCGCG 60.739 66.667 0.00 0.00 0.00 6.46
3486 3660 3.050275 GCACCTCTCACCAACCGC 61.050 66.667 0.00 0.00 0.00 5.68
3487 3661 1.071471 AAGCACCTCTCACCAACCG 59.929 57.895 0.00 0.00 0.00 4.44
3488 3662 0.890996 CCAAGCACCTCTCACCAACC 60.891 60.000 0.00 0.00 0.00 3.77
3489 3663 0.890996 CCCAAGCACCTCTCACCAAC 60.891 60.000 0.00 0.00 0.00 3.77
3490 3664 1.455849 CCCAAGCACCTCTCACCAA 59.544 57.895 0.00 0.00 0.00 3.67
3491 3665 3.160585 CCCAAGCACCTCTCACCA 58.839 61.111 0.00 0.00 0.00 4.17
3492 3666 2.360475 GCCCAAGCACCTCTCACC 60.360 66.667 0.00 0.00 39.53 4.02
3493 3667 1.376553 GAGCCCAAGCACCTCTCAC 60.377 63.158 0.00 0.00 43.56 3.51
3494 3668 2.596851 GGAGCCCAAGCACCTCTCA 61.597 63.158 0.00 0.00 45.50 3.27
3495 3669 2.270527 GGAGCCCAAGCACCTCTC 59.729 66.667 0.00 0.00 45.50 3.20
3500 3674 2.124507 TACTGGTGGAGCCCAAGCAC 62.125 60.000 0.00 0.00 43.56 4.40
3501 3675 1.845664 TACTGGTGGAGCCCAAGCA 60.846 57.895 0.00 0.00 43.56 3.91
3502 3676 1.377333 GTACTGGTGGAGCCCAAGC 60.377 63.158 0.00 0.00 34.18 4.01
3503 3677 1.079127 CGTACTGGTGGAGCCCAAG 60.079 63.158 0.00 0.00 34.18 3.61
3504 3678 3.065306 CGTACTGGTGGAGCCCAA 58.935 61.111 0.00 0.00 34.18 4.12
3505 3679 3.702048 GCGTACTGGTGGAGCCCA 61.702 66.667 0.00 0.00 36.04 5.36
3506 3680 2.741486 TTTGCGTACTGGTGGAGCCC 62.741 60.000 0.00 0.00 36.04 5.19
3507 3681 1.302192 TTTGCGTACTGGTGGAGCC 60.302 57.895 0.00 0.00 37.90 4.70
3508 3682 0.602905 AGTTTGCGTACTGGTGGAGC 60.603 55.000 0.00 0.00 0.00 4.70
3509 3683 1.429463 GAGTTTGCGTACTGGTGGAG 58.571 55.000 0.00 0.00 0.00 3.86
3510 3684 0.034337 GGAGTTTGCGTACTGGTGGA 59.966 55.000 0.00 0.00 0.00 4.02
3511 3685 0.034896 AGGAGTTTGCGTACTGGTGG 59.965 55.000 0.00 0.00 0.00 4.61
3512 3686 1.878953 AAGGAGTTTGCGTACTGGTG 58.121 50.000 0.00 0.00 0.00 4.17
3513 3687 2.632987 AAAGGAGTTTGCGTACTGGT 57.367 45.000 0.00 0.00 0.00 4.00
3514 3688 3.982576 AAAAAGGAGTTTGCGTACTGG 57.017 42.857 0.00 0.00 0.00 4.00
3515 3689 4.609783 CGGTAAAAAGGAGTTTGCGTACTG 60.610 45.833 0.00 0.00 0.00 2.74
3516 3690 3.495753 CGGTAAAAAGGAGTTTGCGTACT 59.504 43.478 0.00 0.00 0.00 2.73
3517 3691 3.364267 CCGGTAAAAAGGAGTTTGCGTAC 60.364 47.826 0.00 0.00 0.00 3.67
3518 3692 2.807392 CCGGTAAAAAGGAGTTTGCGTA 59.193 45.455 0.00 0.00 0.00 4.42
3519 3693 1.605232 CCGGTAAAAAGGAGTTTGCGT 59.395 47.619 0.00 0.00 0.00 5.24
3542 3723 3.152400 GGCTCCGGTACATCCCGT 61.152 66.667 0.00 0.00 46.66 5.28
3569 3750 6.063404 TGCATAGATCATAAAGCATGTGGAA 58.937 36.000 0.00 0.00 35.96 3.53
3589 3770 3.326521 TGGATGGGTCCTACTTATGCAT 58.673 45.455 3.79 3.79 45.32 3.96
3683 3864 4.718940 AAAATATTGCCTTTCCCTGACG 57.281 40.909 0.00 0.00 0.00 4.35
4383 4574 9.231297 ACACTGCACTCATTTACAAAATATAGT 57.769 29.630 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.