Multiple sequence alignment - TraesCS2B01G221700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G221700 chr2B 100.000 3239 0 0 1 3239 211612861 211616099 0.000000e+00 5982.0
1 TraesCS2B01G221700 chr2A 91.231 2372 97 36 906 3239 146825567 146823269 0.000000e+00 3125.0
2 TraesCS2B01G221700 chr2A 94.336 918 35 8 1 907 146827252 146826341 0.000000e+00 1391.0
3 TraesCS2B01G221700 chr2D 93.697 1904 58 23 906 2791 154170682 154172541 0.000000e+00 2795.0
4 TraesCS2B01G221700 chr2D 93.768 706 28 5 1 701 154169391 154170085 0.000000e+00 1046.0
5 TraesCS2B01G221700 chr2D 91.496 341 15 5 2815 3154 154173976 154174303 1.060000e-124 457.0
6 TraesCS2B01G221700 chr2D 92.157 204 11 4 708 907 154170207 154170409 1.900000e-72 283.0
7 TraesCS2B01G221700 chr3B 84.783 322 43 6 2837 3155 366392243 366392561 5.210000e-83 318.0
8 TraesCS2B01G221700 chr5D 87.018 285 31 6 2837 3119 46843362 46843082 1.880000e-82 316.0
9 TraesCS2B01G221700 chr5D 80.688 378 61 11 2836 3208 526753352 526752982 1.900000e-72 283.0
10 TraesCS2B01G221700 chr1D 86.667 270 26 9 2851 3118 371215461 371215722 1.140000e-74 291.0
11 TraesCS2B01G221700 chr6D 83.706 313 37 13 2846 3150 347683549 347683243 1.900000e-72 283.0
12 TraesCS2B01G221700 chr5A 83.072 319 45 9 2804 3119 601974979 601975291 6.840000e-72 281.0
13 TraesCS2B01G221700 chr5A 82.123 179 31 1 1244 1421 523879587 523879409 5.600000e-33 152.0
14 TraesCS2B01G221700 chr4A 80.172 348 63 6 2811 3155 686886101 686886445 4.150000e-64 255.0
15 TraesCS2B01G221700 chr5B 82.353 170 30 0 1244 1413 495473508 495473339 7.240000e-32 148.0
16 TraesCS2B01G221700 chr6A 93.023 43 2 1 1559 1601 457179885 457179844 9.700000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G221700 chr2B 211612861 211616099 3238 False 5982.00 5982 100.0000 1 3239 1 chr2B.!!$F1 3238
1 TraesCS2B01G221700 chr2A 146823269 146827252 3983 True 2258.00 3125 92.7835 1 3239 2 chr2A.!!$R1 3238
2 TraesCS2B01G221700 chr2D 154169391 154174303 4912 False 1145.25 2795 92.7795 1 3154 4 chr2D.!!$F1 3153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 586 1.27249 CCGGCTTGTTCAGTCAGTAGA 59.728 52.381 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 3204 0.323302 TGAAACTACGCCATGGCTGA 59.677 50.0 33.07 19.79 39.32 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 4.262420 GCAACATGATAAACAGTTTGGGGT 60.262 41.667 8.93 0.00 0.00 4.95
474 484 2.316372 AGGAGATGTAGACCCCTTGACT 59.684 50.000 0.00 0.00 0.00 3.41
522 533 6.545666 TGGGAACATGTTCATATGGTAATCAC 59.454 38.462 33.42 15.16 41.20 3.06
523 534 6.545666 GGGAACATGTTCATATGGTAATCACA 59.454 38.462 33.42 0.00 41.20 3.58
548 559 5.254339 AGGCATCTTGCTTGCTTAATTAC 57.746 39.130 0.00 0.00 44.28 1.89
572 586 1.272490 CCGGCTTGTTCAGTCAGTAGA 59.728 52.381 0.00 0.00 0.00 2.59
594 608 6.146760 AGACAGTACCATATTGAGGAGGAAT 58.853 40.000 0.00 0.00 0.00 3.01
613 627 5.917087 AGGAATTGGTAAATCCCTATGAGGA 59.083 40.000 0.00 0.00 37.67 3.71
703 717 2.437200 TTTGCTTGCTTGTATGCACC 57.563 45.000 0.00 0.00 43.20 5.01
779 908 4.002316 TGAAATGACATGACTTGATGCGA 58.998 39.130 0.00 0.00 0.00 5.10
781 910 4.808077 AATGACATGACTTGATGCGATC 57.192 40.909 0.00 0.00 0.00 3.69
900 1033 9.869757 AAAATACAAAAGGTCAATTATAGTGGC 57.130 29.630 0.00 0.00 0.00 5.01
933 1845 3.268072 TGGGATCACCACCAATACATTCA 59.732 43.478 0.00 0.00 46.80 2.57
993 1906 4.449081 CCCTATAAATCCTCCCATTTGCCA 60.449 45.833 0.00 0.00 0.00 4.92
1037 1950 0.040499 GACACCTGTCTCCTCCTCCT 59.960 60.000 0.00 0.00 41.65 3.69
1302 2215 0.458543 CCGAGATCAAGGACACCACG 60.459 60.000 0.00 0.00 0.00 4.94
1562 2475 4.222589 CGCCGCATACGCCACAAG 62.223 66.667 0.00 0.00 38.22 3.16
1563 2476 4.536687 GCCGCATACGCCACAAGC 62.537 66.667 0.00 0.00 38.22 4.01
1564 2477 3.124270 CCGCATACGCCACAAGCA 61.124 61.111 0.00 0.00 44.04 3.91
1565 2478 2.685829 CCGCATACGCCACAAGCAA 61.686 57.895 0.00 0.00 44.04 3.91
1566 2479 1.429021 CGCATACGCCACAAGCAAT 59.571 52.632 0.00 0.00 44.04 3.56
1567 2480 0.655208 CGCATACGCCACAAGCAATA 59.345 50.000 0.00 0.00 44.04 1.90
1568 2481 1.333169 CGCATACGCCACAAGCAATAG 60.333 52.381 0.00 0.00 44.04 1.73
1569 2482 1.597937 GCATACGCCACAAGCAATAGC 60.598 52.381 0.00 0.00 44.04 2.97
1570 2483 1.670295 CATACGCCACAAGCAATAGCA 59.330 47.619 0.00 0.00 45.49 3.49
1571 2484 1.814793 TACGCCACAAGCAATAGCAA 58.185 45.000 0.00 0.00 45.49 3.91
1572 2485 1.176527 ACGCCACAAGCAATAGCAAT 58.823 45.000 0.00 0.00 45.49 3.56
1716 2635 2.064581 GGAGGTGTACAGGCCGGAT 61.065 63.158 10.86 0.00 0.00 4.18
1719 2638 0.252197 AGGTGTACAGGCCGGATTTC 59.748 55.000 10.86 0.00 0.00 2.17
2250 3177 2.294074 TGTTGTGTGGTTTAGCAGACC 58.706 47.619 6.74 0.00 37.69 3.85
2251 3178 2.294074 GTTGTGTGGTTTAGCAGACCA 58.706 47.619 6.74 2.16 44.59 4.02
2256 3183 2.839486 TGGTTTAGCAGACCACTCTG 57.161 50.000 2.16 0.00 46.17 3.35
2257 3184 2.325484 TGGTTTAGCAGACCACTCTGA 58.675 47.619 1.79 0.00 46.32 3.27
2258 3185 2.703536 TGGTTTAGCAGACCACTCTGAA 59.296 45.455 1.79 0.00 46.32 3.02
2259 3186 3.327757 TGGTTTAGCAGACCACTCTGAAT 59.672 43.478 1.79 0.00 46.32 2.57
2260 3187 4.202461 TGGTTTAGCAGACCACTCTGAATT 60.202 41.667 1.79 0.00 46.32 2.17
2261 3188 4.762251 GGTTTAGCAGACCACTCTGAATTT 59.238 41.667 1.79 0.00 46.32 1.82
2262 3189 5.106515 GGTTTAGCAGACCACTCTGAATTTC 60.107 44.000 1.79 0.00 46.32 2.17
2263 3190 2.693069 AGCAGACCACTCTGAATTTCG 58.307 47.619 1.79 0.00 46.32 3.46
2264 3191 2.037772 AGCAGACCACTCTGAATTTCGT 59.962 45.455 1.79 0.00 46.32 3.85
2265 3192 2.158449 GCAGACCACTCTGAATTTCGTG 59.842 50.000 1.79 0.00 46.32 4.35
2266 3193 3.653344 CAGACCACTCTGAATTTCGTGA 58.347 45.455 4.95 0.00 46.32 4.35
2267 3194 4.248859 CAGACCACTCTGAATTTCGTGAT 58.751 43.478 4.95 0.00 46.32 3.06
2268 3195 4.092529 CAGACCACTCTGAATTTCGTGATG 59.907 45.833 4.95 0.00 46.32 3.07
2269 3196 2.744202 ACCACTCTGAATTTCGTGATGC 59.256 45.455 4.95 0.00 0.00 3.91
2270 3197 2.743664 CCACTCTGAATTTCGTGATGCA 59.256 45.455 0.00 0.00 0.00 3.96
2271 3198 3.181513 CCACTCTGAATTTCGTGATGCAG 60.182 47.826 0.00 3.30 34.50 4.41
2272 3199 2.417933 ACTCTGAATTTCGTGATGCAGC 59.582 45.455 0.00 0.00 33.42 5.25
2273 3200 2.676839 CTCTGAATTTCGTGATGCAGCT 59.323 45.455 2.53 0.00 33.42 4.24
2274 3201 3.860641 TCTGAATTTCGTGATGCAGCTA 58.139 40.909 2.53 0.00 33.42 3.32
2275 3202 3.867493 TCTGAATTTCGTGATGCAGCTAG 59.133 43.478 2.53 0.00 33.42 3.42
2276 3203 3.599343 TGAATTTCGTGATGCAGCTAGT 58.401 40.909 2.53 0.00 0.00 2.57
2277 3204 4.002982 TGAATTTCGTGATGCAGCTAGTT 58.997 39.130 2.53 0.00 0.00 2.24
2278 3205 4.093408 TGAATTTCGTGATGCAGCTAGTTC 59.907 41.667 2.53 0.35 0.00 3.01
2279 3206 2.741759 TTCGTGATGCAGCTAGTTCA 57.258 45.000 2.53 0.00 0.00 3.18
2280 3207 2.284263 TCGTGATGCAGCTAGTTCAG 57.716 50.000 2.53 0.00 0.00 3.02
2308 3235 4.201891 GGCGTAGTTTCAGTTCTCGAGATA 60.202 45.833 17.44 4.56 0.00 1.98
2313 3240 7.044641 CGTAGTTTCAGTTCTCGAGATATGTTG 60.045 40.741 17.44 10.32 0.00 3.33
2314 3241 6.925211 AGTTTCAGTTCTCGAGATATGTTGA 58.075 36.000 17.44 12.36 0.00 3.18
2352 3279 4.890088 TCGGCATGTTCTACTACAGTTTT 58.110 39.130 0.00 0.00 0.00 2.43
2387 3314 1.616725 GGGGTTGTCCATCAGATTGCA 60.617 52.381 0.00 0.00 37.22 4.08
2521 3449 4.621068 TTCTTCCTGCATTTGCTATTCG 57.379 40.909 3.94 0.00 42.66 3.34
2526 3454 2.540361 CCTGCATTTGCTATTCGTCAGC 60.540 50.000 3.94 0.00 42.66 4.26
2698 3641 1.561643 AGAGGAATGACTGAAGGCGA 58.438 50.000 0.00 0.00 0.00 5.54
2740 3683 3.283684 CGTTTGGCGGCAACAGGA 61.284 61.111 25.48 6.83 36.85 3.86
2786 3730 2.943033 AGTTTTTCCGGACAACTCACAG 59.057 45.455 18.72 0.00 0.00 3.66
2796 5134 3.391049 GACAACTCACAGTTAGGTCACC 58.609 50.000 0.00 0.00 36.03 4.02
2801 5139 1.056660 CACAGTTAGGTCACCACCCT 58.943 55.000 0.00 0.00 45.12 4.34
2802 5140 1.002087 CACAGTTAGGTCACCACCCTC 59.998 57.143 0.00 0.00 45.12 4.30
2825 5163 3.217626 GGAAATATCAGGTGCTCCCAAG 58.782 50.000 0.00 0.00 34.66 3.61
2908 5264 9.216117 GTGTTTATAAGGAATGTGACTACAACT 57.784 33.333 0.00 0.00 40.84 3.16
2951 5308 5.945466 AATCCAAATGCACATTGGAAAAC 57.055 34.783 29.47 0.00 34.29 2.43
3126 5484 8.087750 TGAACATTCACATTTATTTCCAGAACC 58.912 33.333 0.00 0.00 31.01 3.62
3212 5570 1.064017 GCACCTGATATTTCCCCCACA 60.064 52.381 0.00 0.00 0.00 4.17
3214 5572 1.569072 ACCTGATATTTCCCCCACACC 59.431 52.381 0.00 0.00 0.00 4.16
3234 5592 3.628646 CTCCCCTCTGGTTTGGCCG 62.629 68.421 0.00 0.00 41.21 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 73 3.244281 ATGTCACGCAGCAGGCTCA 62.244 57.895 0.00 0.00 41.67 4.26
522 533 3.795623 AAGCAAGCAAGATGCCTAATG 57.204 42.857 0.00 0.00 46.52 1.90
523 534 6.475596 AATTAAGCAAGCAAGATGCCTAAT 57.524 33.333 0.00 0.00 46.52 1.73
548 559 1.165907 TGACTGAACAAGCCGGCAAG 61.166 55.000 31.54 22.75 0.00 4.01
572 586 6.409695 CCAATTCCTCCTCAATATGGTACTGT 60.410 42.308 0.00 0.00 0.00 3.55
582 596 5.196574 AGGGATTTACCAATTCCTCCTCAAT 59.803 40.000 0.00 0.00 44.49 2.57
587 601 6.200878 TCATAGGGATTTACCAATTCCTCC 57.799 41.667 0.00 0.00 44.49 4.30
613 627 7.698163 ATTCAGTCAAGGGGTCTAATCTAAT 57.302 36.000 0.00 0.00 0.00 1.73
614 628 7.510675 AATTCAGTCAAGGGGTCTAATCTAA 57.489 36.000 0.00 0.00 0.00 2.10
615 629 7.844779 ACTAATTCAGTCAAGGGGTCTAATCTA 59.155 37.037 0.00 0.00 28.33 1.98
616 630 6.674419 ACTAATTCAGTCAAGGGGTCTAATCT 59.326 38.462 0.00 0.00 28.33 2.40
617 631 6.890293 ACTAATTCAGTCAAGGGGTCTAATC 58.110 40.000 0.00 0.00 28.33 1.75
618 632 6.893020 ACTAATTCAGTCAAGGGGTCTAAT 57.107 37.500 0.00 0.00 28.33 1.73
703 717 7.767198 TCCCACTTTCTCCAATAAAATACGTAG 59.233 37.037 0.08 0.00 0.00 3.51
900 1033 2.111878 GATCCCACCCCTGCATCG 59.888 66.667 0.00 0.00 0.00 3.84
933 1845 7.895429 TGGTTTGAAATTTTCAGATAGGAGGAT 59.105 33.333 11.41 0.00 41.38 3.24
993 1906 1.678101 GAGTGTTTGCTCTGGTTGCTT 59.322 47.619 0.00 0.00 32.99 3.91
1037 1950 0.613292 GAGCTGGAGGAGGTGTGAGA 60.613 60.000 0.00 0.00 30.42 3.27
1119 2032 2.926779 TCCTGCAGCTGGAGCACT 60.927 61.111 28.30 0.00 45.16 4.40
1561 2474 5.300034 TGTTGCTATTGCTATTGCTATTGCT 59.700 36.000 22.49 0.00 46.15 3.91
1562 2475 5.522456 TGTTGCTATTGCTATTGCTATTGC 58.478 37.500 18.00 18.00 46.17 3.56
1563 2476 5.628193 GCTGTTGCTATTGCTATTGCTATTG 59.372 40.000 14.39 1.57 40.48 1.90
1564 2477 5.300034 TGCTGTTGCTATTGCTATTGCTATT 59.700 36.000 14.39 0.00 39.00 1.73
1565 2478 4.823442 TGCTGTTGCTATTGCTATTGCTAT 59.177 37.500 14.39 0.86 39.00 2.97
1566 2479 4.198530 TGCTGTTGCTATTGCTATTGCTA 58.801 39.130 14.39 5.53 39.00 3.49
1567 2480 3.018856 TGCTGTTGCTATTGCTATTGCT 58.981 40.909 14.39 0.00 39.00 3.91
1568 2481 3.425577 TGCTGTTGCTATTGCTATTGC 57.574 42.857 7.53 7.53 40.48 3.56
1569 2482 4.735985 TGTTGCTGTTGCTATTGCTATTG 58.264 39.130 0.00 0.00 40.48 1.90
1570 2483 4.460382 ACTGTTGCTGTTGCTATTGCTATT 59.540 37.500 0.00 0.00 40.48 1.73
1571 2484 4.012374 ACTGTTGCTGTTGCTATTGCTAT 58.988 39.130 0.00 0.00 40.48 2.97
1572 2485 3.411446 ACTGTTGCTGTTGCTATTGCTA 58.589 40.909 0.00 0.00 40.48 3.49
1735 2657 1.077625 AAGACTCCAGCTCCTCGGT 59.922 57.895 0.00 0.00 0.00 4.69
1837 2759 3.063084 GACGCTGGTCTCCTCCGT 61.063 66.667 4.63 4.63 40.15 4.69
2048 2970 1.333619 GGCAAAAGAGCAAGAACGACA 59.666 47.619 0.00 0.00 35.83 4.35
2250 3177 3.727079 GCTGCATCACGAAATTCAGAGTG 60.727 47.826 0.00 0.00 36.06 3.51
2251 3178 2.417933 GCTGCATCACGAAATTCAGAGT 59.582 45.455 0.00 0.00 0.00 3.24
2252 3179 2.676839 AGCTGCATCACGAAATTCAGAG 59.323 45.455 1.02 0.00 0.00 3.35
2253 3180 2.703416 AGCTGCATCACGAAATTCAGA 58.297 42.857 1.02 0.00 0.00 3.27
2254 3181 3.620374 ACTAGCTGCATCACGAAATTCAG 59.380 43.478 1.02 0.00 0.00 3.02
2256 3183 4.093408 TGAACTAGCTGCATCACGAAATTC 59.907 41.667 1.02 0.00 0.00 2.17
2257 3184 4.002982 TGAACTAGCTGCATCACGAAATT 58.997 39.130 1.02 0.00 0.00 1.82
2258 3185 3.599343 TGAACTAGCTGCATCACGAAAT 58.401 40.909 1.02 0.00 0.00 2.17
2259 3186 2.995939 CTGAACTAGCTGCATCACGAAA 59.004 45.455 1.02 0.00 0.00 3.46
2260 3187 2.610433 CTGAACTAGCTGCATCACGAA 58.390 47.619 1.02 0.00 0.00 3.85
2261 3188 2.284263 CTGAACTAGCTGCATCACGA 57.716 50.000 1.02 0.00 0.00 4.35
2272 3199 1.137086 ACTACGCCATGGCTGAACTAG 59.863 52.381 33.07 22.59 39.32 2.57
2273 3200 1.191535 ACTACGCCATGGCTGAACTA 58.808 50.000 33.07 14.13 39.32 2.24
2274 3201 0.324943 AACTACGCCATGGCTGAACT 59.675 50.000 33.07 12.99 39.32 3.01
2275 3202 1.130561 GAAACTACGCCATGGCTGAAC 59.869 52.381 33.07 14.30 39.32 3.18
2276 3203 1.271108 TGAAACTACGCCATGGCTGAA 60.271 47.619 33.07 17.42 39.32 3.02
2277 3204 0.323302 TGAAACTACGCCATGGCTGA 59.677 50.000 33.07 19.79 39.32 4.26
2278 3205 0.729116 CTGAAACTACGCCATGGCTG 59.271 55.000 33.07 26.84 39.32 4.85
2279 3206 0.324943 ACTGAAACTACGCCATGGCT 59.675 50.000 33.07 21.97 39.32 4.75
2280 3207 1.130561 GAACTGAAACTACGCCATGGC 59.869 52.381 27.67 27.67 37.85 4.40
2281 3208 2.673368 GAGAACTGAAACTACGCCATGG 59.327 50.000 7.63 7.63 0.00 3.66
2287 3214 6.487960 ACATATCTCGAGAACTGAAACTACG 58.512 40.000 25.71 7.14 0.00 3.51
2308 3235 3.657398 TTCTCATCCATGGCTCAACAT 57.343 42.857 6.96 0.00 0.00 2.71
2313 3240 2.149578 CCGATTTCTCATCCATGGCTC 58.850 52.381 6.96 0.00 0.00 4.70
2314 3241 1.816961 GCCGATTTCTCATCCATGGCT 60.817 52.381 6.96 0.00 38.22 4.75
2352 3279 3.139397 ACAACCCCATTGAAACTACCAGA 59.861 43.478 0.00 0.00 41.23 3.86
2387 3314 0.675633 GGTTTCCTGCATGCAACACT 59.324 50.000 22.88 0.00 0.00 3.55
2427 3354 2.929960 GATTCATCATCCATTGCAGCG 58.070 47.619 0.00 0.00 0.00 5.18
2521 3449 8.023128 TCTAAATTACAATTTGAAGCAGCTGAC 58.977 33.333 20.43 9.11 38.90 3.51
2526 3454 7.274250 GCTGGTCTAAATTACAATTTGAAGCAG 59.726 37.037 22.57 22.57 43.37 4.24
2622 3565 1.081277 AACCTCTGACTCCCCTCCC 59.919 63.158 0.00 0.00 0.00 4.30
2665 3608 0.117742 TCCTCTAAACCCCGACCCTT 59.882 55.000 0.00 0.00 0.00 3.95
2698 3641 3.367743 CAGCGGTGCATGCCTTGT 61.368 61.111 16.68 0.00 0.00 3.16
2735 3678 3.648739 GGTAGATTCTTCCTCCTCCTGT 58.351 50.000 2.26 0.00 0.00 4.00
2740 3683 3.383698 TGTCGGTAGATTCTTCCTCCT 57.616 47.619 7.63 0.00 0.00 3.69
2786 3730 1.595357 CCGAGGGTGGTGACCTAAC 59.405 63.158 2.11 0.00 42.66 2.34
2796 5134 1.768870 ACCTGATATTTCCCGAGGGTG 59.231 52.381 8.20 0.00 36.47 4.61
2801 5139 1.416401 GGAGCACCTGATATTTCCCGA 59.584 52.381 0.00 0.00 0.00 5.14
2802 5140 1.543429 GGGAGCACCTGATATTTCCCG 60.543 57.143 0.00 0.00 35.35 5.14
2908 5264 7.291182 TGGATTTTGGACCTGAAATTTTTAGGA 59.709 33.333 22.76 3.67 35.55 2.94
3154 5512 5.244755 GGCTCCAATTTGCAATAAAAAGGA 58.755 37.500 0.00 1.86 0.00 3.36
3155 5513 4.395854 GGGCTCCAATTTGCAATAAAAAGG 59.604 41.667 0.00 0.00 0.00 3.11
3156 5514 4.395854 GGGGCTCCAATTTGCAATAAAAAG 59.604 41.667 0.00 0.00 0.00 2.27
3157 5515 4.042684 AGGGGCTCCAATTTGCAATAAAAA 59.957 37.500 4.79 0.00 34.83 1.94
3158 5516 3.586618 AGGGGCTCCAATTTGCAATAAAA 59.413 39.130 4.79 0.00 34.83 1.52
3159 5517 3.180507 AGGGGCTCCAATTTGCAATAAA 58.819 40.909 4.79 0.00 34.83 1.40
3160 5518 2.765699 GAGGGGCTCCAATTTGCAATAA 59.234 45.455 4.79 0.00 34.83 1.40
3161 5519 2.292126 TGAGGGGCTCCAATTTGCAATA 60.292 45.455 4.79 0.00 34.83 1.90
3162 5520 1.197812 GAGGGGCTCCAATTTGCAAT 58.802 50.000 4.79 0.00 34.83 3.56
3163 5521 0.178938 TGAGGGGCTCCAATTTGCAA 60.179 50.000 4.79 0.00 34.83 4.08
3164 5522 0.041535 ATGAGGGGCTCCAATTTGCA 59.958 50.000 4.79 0.00 34.83 4.08
3191 5549 1.215423 GTGGGGGAAATATCAGGTGCT 59.785 52.381 0.00 0.00 0.00 4.40
3212 5570 1.852626 CAAACCAGAGGGGAGGGGT 60.853 63.158 0.00 0.00 41.15 4.95
3214 5572 3.090765 CCAAACCAGAGGGGAGGG 58.909 66.667 0.00 0.00 41.15 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.