Multiple sequence alignment - TraesCS2B01G221200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G221200 chr2B 100.000 4010 0 0 1 4010 211190392 211194401 0.000000e+00 7406.0
1 TraesCS2B01G221200 chr2B 82.137 1965 331 15 1060 3011 211153304 211155261 0.000000e+00 1666.0
2 TraesCS2B01G221200 chr2B 77.808 1834 332 52 1060 2839 132511697 132509885 0.000000e+00 1062.0
3 TraesCS2B01G221200 chr2B 76.948 937 208 8 1994 2926 67080744 67079812 9.870000e-146 527.0
4 TraesCS2B01G221200 chr2A 92.597 2283 113 20 927 3172 147538480 147536217 0.000000e+00 3229.0
5 TraesCS2B01G221200 chr2A 94.360 461 21 2 3397 3857 147479557 147479102 0.000000e+00 702.0
6 TraesCS2B01G221200 chr2A 86.257 342 26 9 16 351 147540187 147539861 6.380000e-93 351.0
7 TraesCS2B01G221200 chr2A 99.355 155 1 0 3856 4010 147478926 147478772 8.480000e-72 281.0
8 TraesCS2B01G221200 chr2A 91.729 133 5 5 573 702 147538841 147538712 3.180000e-41 180.0
9 TraesCS2B01G221200 chr2A 94.737 38 0 2 1566 1603 43287660 43287625 1.560000e-04 58.4
10 TraesCS2B01G221200 chr2D 82.401 1966 324 14 1060 3011 153272174 153274131 0.000000e+00 1694.0
11 TraesCS2B01G221200 chr2D 78.069 1833 340 42 1060 2843 80833715 80835534 0.000000e+00 1101.0
12 TraesCS2B01G221200 chr2D 95.365 561 11 8 3311 3857 153789312 153789871 0.000000e+00 878.0
13 TraesCS2B01G221200 chr2D 97.468 158 4 0 3853 4010 153790044 153790201 1.840000e-68 270.0
14 TraesCS2B01G221200 chr4A 77.655 1902 403 19 1060 2950 662149650 662147760 0.000000e+00 1138.0
15 TraesCS2B01G221200 chr7A 76.911 1897 412 20 1060 2944 49965634 49963752 0.000000e+00 1053.0
16 TraesCS2B01G221200 chr4B 77.193 1425 275 28 1457 2839 281902556 281901140 0.000000e+00 785.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G221200 chr2B 211190392 211194401 4009 False 7406.000000 7406 100.000000 1 4010 1 chr2B.!!$F2 4009
1 TraesCS2B01G221200 chr2B 211153304 211155261 1957 False 1666.000000 1666 82.137000 1060 3011 1 chr2B.!!$F1 1951
2 TraesCS2B01G221200 chr2B 132509885 132511697 1812 True 1062.000000 1062 77.808000 1060 2839 1 chr2B.!!$R2 1779
3 TraesCS2B01G221200 chr2B 67079812 67080744 932 True 527.000000 527 76.948000 1994 2926 1 chr2B.!!$R1 932
4 TraesCS2B01G221200 chr2A 147536217 147540187 3970 True 1253.333333 3229 90.194333 16 3172 3 chr2A.!!$R3 3156
5 TraesCS2B01G221200 chr2A 147478772 147479557 785 True 491.500000 702 96.857500 3397 4010 2 chr2A.!!$R2 613
6 TraesCS2B01G221200 chr2D 153272174 153274131 1957 False 1694.000000 1694 82.401000 1060 3011 1 chr2D.!!$F2 1951
7 TraesCS2B01G221200 chr2D 80833715 80835534 1819 False 1101.000000 1101 78.069000 1060 2843 1 chr2D.!!$F1 1783
8 TraesCS2B01G221200 chr2D 153789312 153790201 889 False 574.000000 878 96.416500 3311 4010 2 chr2D.!!$F3 699
9 TraesCS2B01G221200 chr4A 662147760 662149650 1890 True 1138.000000 1138 77.655000 1060 2950 1 chr4A.!!$R1 1890
10 TraesCS2B01G221200 chr7A 49963752 49965634 1882 True 1053.000000 1053 76.911000 1060 2944 1 chr7A.!!$R1 1884
11 TraesCS2B01G221200 chr4B 281901140 281902556 1416 True 785.000000 785 77.193000 1457 2839 1 chr4B.!!$R1 1382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 1738 0.036448 TCCGACGTCCTCTCTGACTT 59.964 55.0 10.58 0.0 32.97 3.01 F
782 1787 0.107800 TCGGTCCTCCTCTACGACTG 60.108 60.0 0.00 0.0 34.76 3.51 F
1077 2102 0.613777 CGTTCTCCTACCAGGGCTTT 59.386 55.0 0.00 0.0 35.59 3.51 F
2019 3095 0.889186 ACTTGTTCCATGCCACCGAC 60.889 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2718 3797 0.323360 TGAATTTCCCCTCAAGCCGG 60.323 55.000 0.00 0.0 0.0 6.13 R
2765 3844 0.110823 CGCGCACAACAAACCTAGTC 60.111 55.000 8.75 0.0 0.0 2.59 R
2835 3914 2.396157 GGCGATTTGGTCACCGTCC 61.396 63.158 0.00 0.0 0.0 4.79 R
3114 4208 0.036858 AAAAGAGCTCCTCCGACTGC 60.037 55.000 10.93 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.583073 TGTCACTGTTAGAAGTCACAGCTA 59.417 41.667 0.00 0.00 43.72 3.32
37 38 3.568853 ACTGTTAGAAGTCACAGCTACGT 59.431 43.478 0.00 0.00 43.72 3.57
44 45 4.096682 AGAAGTCACAGCTACGTATCTTCC 59.903 45.833 0.00 0.00 32.76 3.46
49 50 2.873472 ACAGCTACGTATCTTCCTCTCG 59.127 50.000 0.00 0.00 0.00 4.04
60 61 4.576216 TCTTCCTCTCGAATCATAGTGC 57.424 45.455 0.00 0.00 0.00 4.40
71 72 0.744414 TCATAGTGCAAAGAGCCCGC 60.744 55.000 0.00 0.00 44.83 6.13
78 81 2.032681 AAAGAGCCCGCAGTCCAC 59.967 61.111 0.00 0.00 0.00 4.02
84 87 1.212751 GCCCGCAGTCCACATTTTC 59.787 57.895 0.00 0.00 0.00 2.29
123 126 3.954904 GAGGTCTCACTCAGCCATACTTA 59.045 47.826 0.00 0.00 37.44 2.24
167 170 0.588252 ATGTGCAGTGACAAACGCTC 59.412 50.000 0.00 0.00 37.22 5.03
212 215 1.970114 CTTGCCCAGCTCACACCTG 60.970 63.158 0.00 0.00 0.00 4.00
228 231 3.648982 TGCGACCGCTTGCAGTTG 61.649 61.111 15.61 0.00 42.51 3.16
237 240 4.118480 TTGCAGTTGCGAGAACGT 57.882 50.000 0.00 0.00 45.83 3.99
238 241 3.276021 TTGCAGTTGCGAGAACGTA 57.724 47.368 0.00 0.00 45.83 3.57
239 242 0.856641 TTGCAGTTGCGAGAACGTAC 59.143 50.000 0.00 0.00 45.83 3.67
240 243 0.942410 TGCAGTTGCGAGAACGTACC 60.942 55.000 0.00 0.00 45.83 3.34
241 244 0.942410 GCAGTTGCGAGAACGTACCA 60.942 55.000 0.00 0.00 41.98 3.25
242 245 1.060713 CAGTTGCGAGAACGTACCAG 58.939 55.000 0.00 0.00 41.98 4.00
243 246 0.956633 AGTTGCGAGAACGTACCAGA 59.043 50.000 0.00 0.00 41.98 3.86
244 247 1.068472 AGTTGCGAGAACGTACCAGAG 60.068 52.381 0.00 0.00 41.98 3.35
245 248 1.068748 GTTGCGAGAACGTACCAGAGA 60.069 52.381 0.00 0.00 41.98 3.10
246 249 1.241165 TGCGAGAACGTACCAGAGAA 58.759 50.000 0.00 0.00 41.98 2.87
256 260 2.802816 CGTACCAGAGAATAGGCAATGC 59.197 50.000 0.00 0.00 0.00 3.56
268 272 3.142838 CAATGCCTTCCGCCCCAG 61.143 66.667 0.00 0.00 36.24 4.45
285 289 4.699522 GACCACTCCGGCCGCTTT 62.700 66.667 22.85 1.33 39.03 3.51
286 290 4.699522 ACCACTCCGGCCGCTTTC 62.700 66.667 22.85 0.00 39.03 2.62
289 293 3.376078 ACTCCGGCCGCTTTCGTA 61.376 61.111 22.85 0.00 0.00 3.43
290 294 2.125832 CTCCGGCCGCTTTCGTAA 60.126 61.111 22.85 0.00 0.00 3.18
291 295 1.738830 CTCCGGCCGCTTTCGTAAA 60.739 57.895 22.85 0.00 0.00 2.01
292 296 1.293267 CTCCGGCCGCTTTCGTAAAA 61.293 55.000 22.85 0.00 0.00 1.52
293 297 0.674269 TCCGGCCGCTTTCGTAAAAT 60.674 50.000 22.85 0.00 0.00 1.82
302 306 3.614588 GCTTTCGTAAAATATCCACGGC 58.385 45.455 0.00 0.00 36.37 5.68
351 355 1.671054 CACGGTCCTTTGCGGTGAT 60.671 57.895 0.00 0.00 38.80 3.06
352 356 1.375523 ACGGTCCTTTGCGGTGATC 60.376 57.895 0.00 0.00 0.00 2.92
353 357 1.079127 CGGTCCTTTGCGGTGATCT 60.079 57.895 0.00 0.00 0.00 2.75
354 358 1.361668 CGGTCCTTTGCGGTGATCTG 61.362 60.000 0.00 0.00 0.00 2.90
355 359 0.321653 GGTCCTTTGCGGTGATCTGT 60.322 55.000 0.00 0.00 0.00 3.41
356 360 0.798776 GTCCTTTGCGGTGATCTGTG 59.201 55.000 0.00 0.00 0.00 3.66
357 361 0.321564 TCCTTTGCGGTGATCTGTGG 60.322 55.000 0.00 0.00 0.00 4.17
358 362 1.503542 CTTTGCGGTGATCTGTGGC 59.496 57.895 0.00 0.00 0.00 5.01
359 363 2.244436 CTTTGCGGTGATCTGTGGCG 62.244 60.000 0.00 0.00 0.00 5.69
362 366 4.457496 CGGTGATCTGTGGCGCCT 62.457 66.667 29.70 6.37 32.58 5.52
363 367 2.821366 GGTGATCTGTGGCGCCTG 60.821 66.667 29.70 17.57 0.00 4.85
364 368 2.265739 GTGATCTGTGGCGCCTGA 59.734 61.111 29.70 22.23 0.00 3.86
365 369 1.375908 GTGATCTGTGGCGCCTGAA 60.376 57.895 29.70 12.12 0.00 3.02
366 370 1.375908 TGATCTGTGGCGCCTGAAC 60.376 57.895 29.70 18.50 0.00 3.18
367 371 1.375908 GATCTGTGGCGCCTGAACA 60.376 57.895 29.70 22.29 0.00 3.18
368 372 1.639298 GATCTGTGGCGCCTGAACAC 61.639 60.000 29.70 17.68 35.75 3.32
369 373 2.395988 ATCTGTGGCGCCTGAACACA 62.396 55.000 29.70 21.51 42.29 3.72
370 374 2.124529 TGTGGCGCCTGAACACAA 60.125 55.556 29.70 0.07 41.65 3.33
371 375 1.723608 CTGTGGCGCCTGAACACAAA 61.724 55.000 29.70 0.00 43.67 2.83
372 376 1.106351 TGTGGCGCCTGAACACAAAT 61.106 50.000 29.70 0.00 41.65 2.32
373 377 0.387239 GTGGCGCCTGAACACAAATC 60.387 55.000 29.70 0.00 35.30 2.17
374 378 0.821301 TGGCGCCTGAACACAAATCA 60.821 50.000 29.70 0.00 0.00 2.57
375 379 0.109597 GGCGCCTGAACACAAATCAG 60.110 55.000 22.15 0.00 43.15 2.90
376 380 0.874390 GCGCCTGAACACAAATCAGA 59.126 50.000 0.00 0.00 45.74 3.27
377 381 1.135859 GCGCCTGAACACAAATCAGAG 60.136 52.381 0.00 0.98 45.74 3.35
378 382 2.416747 CGCCTGAACACAAATCAGAGA 58.583 47.619 5.16 0.00 45.74 3.10
379 383 2.807967 CGCCTGAACACAAATCAGAGAA 59.192 45.455 5.16 0.00 45.74 2.87
380 384 3.250762 CGCCTGAACACAAATCAGAGAAA 59.749 43.478 5.16 0.00 45.74 2.52
381 385 4.612259 CGCCTGAACACAAATCAGAGAAAG 60.612 45.833 5.16 0.00 45.74 2.62
382 386 4.516698 GCCTGAACACAAATCAGAGAAAGA 59.483 41.667 5.16 0.00 45.74 2.52
383 387 5.561725 GCCTGAACACAAATCAGAGAAAGAC 60.562 44.000 5.16 0.00 45.74 3.01
384 388 5.528690 CCTGAACACAAATCAGAGAAAGACA 59.471 40.000 5.16 0.00 45.74 3.41
385 389 6.206243 CCTGAACACAAATCAGAGAAAGACAT 59.794 38.462 5.16 0.00 45.74 3.06
386 390 7.255381 CCTGAACACAAATCAGAGAAAGACATT 60.255 37.037 5.16 0.00 45.74 2.71
387 391 7.420002 TGAACACAAATCAGAGAAAGACATTG 58.580 34.615 0.00 0.00 0.00 2.82
388 392 6.323203 ACACAAATCAGAGAAAGACATTGG 57.677 37.500 0.00 0.00 0.00 3.16
389 393 5.829924 ACACAAATCAGAGAAAGACATTGGT 59.170 36.000 0.00 0.00 0.00 3.67
390 394 6.147581 CACAAATCAGAGAAAGACATTGGTG 58.852 40.000 0.00 0.00 0.00 4.17
391 395 5.829924 ACAAATCAGAGAAAGACATTGGTGT 59.170 36.000 0.00 0.00 42.49 4.16
392 396 6.322201 ACAAATCAGAGAAAGACATTGGTGTT 59.678 34.615 0.00 0.00 39.09 3.32
393 397 6.966534 AATCAGAGAAAGACATTGGTGTTT 57.033 33.333 0.00 0.00 42.55 2.83
394 398 6.966534 ATCAGAGAAAGACATTGGTGTTTT 57.033 33.333 0.00 0.00 40.23 2.43
395 399 6.135290 TCAGAGAAAGACATTGGTGTTTTG 57.865 37.500 0.00 0.00 40.23 2.44
396 400 5.885352 TCAGAGAAAGACATTGGTGTTTTGA 59.115 36.000 0.00 0.00 40.23 2.69
397 401 6.038603 TCAGAGAAAGACATTGGTGTTTTGAG 59.961 38.462 0.00 0.00 40.23 3.02
398 402 5.300286 AGAGAAAGACATTGGTGTTTTGAGG 59.700 40.000 0.00 0.00 40.23 3.86
399 403 4.956075 AGAAAGACATTGGTGTTTTGAGGT 59.044 37.500 0.00 0.00 40.23 3.85
400 404 5.422012 AGAAAGACATTGGTGTTTTGAGGTT 59.578 36.000 0.00 0.00 40.23 3.50
401 405 6.605594 AGAAAGACATTGGTGTTTTGAGGTTA 59.394 34.615 0.00 0.00 40.23 2.85
402 406 5.767816 AGACATTGGTGTTTTGAGGTTAC 57.232 39.130 0.00 0.00 39.09 2.50
403 407 4.274950 AGACATTGGTGTTTTGAGGTTACG 59.725 41.667 0.00 0.00 39.09 3.18
404 408 3.949113 ACATTGGTGTTTTGAGGTTACGT 59.051 39.130 0.00 0.00 34.01 3.57
405 409 5.124645 ACATTGGTGTTTTGAGGTTACGTA 58.875 37.500 0.00 0.00 34.01 3.57
406 410 5.237779 ACATTGGTGTTTTGAGGTTACGTAG 59.762 40.000 0.00 0.00 34.01 3.51
407 411 3.132925 TGGTGTTTTGAGGTTACGTAGC 58.867 45.455 0.03 0.03 0.00 3.58
408 412 3.181463 TGGTGTTTTGAGGTTACGTAGCT 60.181 43.478 9.39 3.16 37.28 3.32
413 417 2.892025 GAGGTTACGTAGCTCCCCA 58.108 57.895 9.39 0.00 43.98 4.96
414 418 0.459078 GAGGTTACGTAGCTCCCCAC 59.541 60.000 9.39 0.00 43.98 4.61
415 419 0.251922 AGGTTACGTAGCTCCCCACA 60.252 55.000 9.39 0.00 0.00 4.17
416 420 0.175073 GGTTACGTAGCTCCCCACAG 59.825 60.000 9.39 0.00 0.00 3.66
417 421 1.180029 GTTACGTAGCTCCCCACAGA 58.820 55.000 1.72 0.00 0.00 3.41
418 422 1.755380 GTTACGTAGCTCCCCACAGAT 59.245 52.381 1.72 0.00 0.00 2.90
419 423 1.688772 TACGTAGCTCCCCACAGATC 58.311 55.000 0.00 0.00 0.00 2.75
420 424 0.324368 ACGTAGCTCCCCACAGATCA 60.324 55.000 0.00 0.00 0.00 2.92
421 425 0.103208 CGTAGCTCCCCACAGATCAC 59.897 60.000 0.00 0.00 0.00 3.06
422 426 1.195115 GTAGCTCCCCACAGATCACA 58.805 55.000 0.00 0.00 0.00 3.58
423 427 1.137872 GTAGCTCCCCACAGATCACAG 59.862 57.143 0.00 0.00 0.00 3.66
424 428 0.252421 AGCTCCCCACAGATCACAGA 60.252 55.000 0.00 0.00 0.00 3.41
425 429 0.107945 GCTCCCCACAGATCACAGAC 60.108 60.000 0.00 0.00 0.00 3.51
426 430 1.566211 CTCCCCACAGATCACAGACT 58.434 55.000 0.00 0.00 0.00 3.24
427 431 2.739943 CTCCCCACAGATCACAGACTA 58.260 52.381 0.00 0.00 0.00 2.59
428 432 3.303938 CTCCCCACAGATCACAGACTAT 58.696 50.000 0.00 0.00 0.00 2.12
429 433 4.474394 CTCCCCACAGATCACAGACTATA 58.526 47.826 0.00 0.00 0.00 1.31
430 434 4.878968 TCCCCACAGATCACAGACTATAA 58.121 43.478 0.00 0.00 0.00 0.98
431 435 5.277250 TCCCCACAGATCACAGACTATAAA 58.723 41.667 0.00 0.00 0.00 1.40
432 436 5.724370 TCCCCACAGATCACAGACTATAAAA 59.276 40.000 0.00 0.00 0.00 1.52
433 437 6.214615 TCCCCACAGATCACAGACTATAAAAA 59.785 38.462 0.00 0.00 0.00 1.94
434 438 7.056635 CCCCACAGATCACAGACTATAAAAAT 58.943 38.462 0.00 0.00 0.00 1.82
435 439 7.227512 CCCCACAGATCACAGACTATAAAAATC 59.772 40.741 0.00 0.00 0.00 2.17
436 440 7.989741 CCCACAGATCACAGACTATAAAAATCT 59.010 37.037 0.00 0.00 0.00 2.40
439 443 9.757227 ACAGATCACAGACTATAAAAATCTAGC 57.243 33.333 0.00 0.00 0.00 3.42
440 444 9.755804 CAGATCACAGACTATAAAAATCTAGCA 57.244 33.333 0.00 0.00 0.00 3.49
447 451 9.928236 CAGACTATAAAAATCTAGCAAAAGAGC 57.072 33.333 0.00 0.00 0.00 4.09
448 452 9.672673 AGACTATAAAAATCTAGCAAAAGAGCA 57.327 29.630 0.00 0.00 36.85 4.26
455 459 9.762933 AAAAATCTAGCAAAAGAGCATGTAAAA 57.237 25.926 0.00 0.00 36.85 1.52
456 460 9.762933 AAAATCTAGCAAAAGAGCATGTAAAAA 57.237 25.926 0.00 0.00 36.85 1.94
457 461 8.976986 AATCTAGCAAAAGAGCATGTAAAAAG 57.023 30.769 0.00 0.00 36.85 2.27
458 462 7.744087 TCTAGCAAAAGAGCATGTAAAAAGA 57.256 32.000 0.00 0.00 36.85 2.52
459 463 8.165239 TCTAGCAAAAGAGCATGTAAAAAGAA 57.835 30.769 0.00 0.00 36.85 2.52
460 464 8.292448 TCTAGCAAAAGAGCATGTAAAAAGAAG 58.708 33.333 0.00 0.00 36.85 2.85
461 465 6.218746 AGCAAAAGAGCATGTAAAAAGAAGG 58.781 36.000 0.00 0.00 36.85 3.46
462 466 5.985530 GCAAAAGAGCATGTAAAAAGAAGGT 59.014 36.000 0.00 0.00 0.00 3.50
463 467 6.074142 GCAAAAGAGCATGTAAAAAGAAGGTG 60.074 38.462 0.00 0.00 0.00 4.00
464 468 6.959639 AAAGAGCATGTAAAAAGAAGGTGA 57.040 33.333 0.00 0.00 0.00 4.02
465 469 7.530426 AAAGAGCATGTAAAAAGAAGGTGAT 57.470 32.000 0.00 0.00 0.00 3.06
466 470 7.530426 AAGAGCATGTAAAAAGAAGGTGATT 57.470 32.000 0.00 0.00 0.00 2.57
467 471 6.917533 AGAGCATGTAAAAAGAAGGTGATTG 58.082 36.000 0.00 0.00 0.00 2.67
468 472 6.716628 AGAGCATGTAAAAAGAAGGTGATTGA 59.283 34.615 0.00 0.00 0.00 2.57
469 473 7.395489 AGAGCATGTAAAAAGAAGGTGATTGAT 59.605 33.333 0.00 0.00 0.00 2.57
470 474 7.318141 AGCATGTAAAAAGAAGGTGATTGATG 58.682 34.615 0.00 0.00 0.00 3.07
471 475 6.035327 GCATGTAAAAAGAAGGTGATTGATGC 59.965 38.462 0.00 0.00 0.00 3.91
472 476 6.899393 TGTAAAAAGAAGGTGATTGATGCT 57.101 33.333 0.00 0.00 0.00 3.79
473 477 6.913170 TGTAAAAAGAAGGTGATTGATGCTC 58.087 36.000 0.00 0.00 0.00 4.26
474 478 6.716628 TGTAAAAAGAAGGTGATTGATGCTCT 59.283 34.615 0.00 0.00 0.00 4.09
475 479 5.893897 AAAAGAAGGTGATTGATGCTCTC 57.106 39.130 0.00 0.00 0.00 3.20
476 480 4.840716 AAGAAGGTGATTGATGCTCTCT 57.159 40.909 0.00 0.00 0.00 3.10
477 481 4.840716 AGAAGGTGATTGATGCTCTCTT 57.159 40.909 0.00 0.00 0.00 2.85
478 482 4.768583 AGAAGGTGATTGATGCTCTCTTC 58.231 43.478 0.00 0.00 0.00 2.87
479 483 4.224594 AGAAGGTGATTGATGCTCTCTTCA 59.775 41.667 0.00 0.00 0.00 3.02
480 484 4.139859 AGGTGATTGATGCTCTCTTCAG 57.860 45.455 0.00 0.00 0.00 3.02
481 485 2.613133 GGTGATTGATGCTCTCTTCAGC 59.387 50.000 0.00 0.00 40.13 4.26
487 491 2.135890 TGCTCTCTTCAGCACCACA 58.864 52.632 0.00 0.00 44.73 4.17
488 492 0.689055 TGCTCTCTTCAGCACCACAT 59.311 50.000 0.00 0.00 44.73 3.21
489 493 1.901833 TGCTCTCTTCAGCACCACATA 59.098 47.619 0.00 0.00 44.73 2.29
490 494 2.502947 TGCTCTCTTCAGCACCACATAT 59.497 45.455 0.00 0.00 44.73 1.78
491 495 3.706086 TGCTCTCTTCAGCACCACATATA 59.294 43.478 0.00 0.00 44.73 0.86
492 496 4.162131 TGCTCTCTTCAGCACCACATATAA 59.838 41.667 0.00 0.00 44.73 0.98
493 497 5.118990 GCTCTCTTCAGCACCACATATAAA 58.881 41.667 0.00 0.00 39.43 1.40
494 498 5.236047 GCTCTCTTCAGCACCACATATAAAG 59.764 44.000 0.00 0.00 39.43 1.85
495 499 5.674525 TCTCTTCAGCACCACATATAAAGG 58.325 41.667 0.00 0.00 0.00 3.11
496 500 5.189736 TCTCTTCAGCACCACATATAAAGGT 59.810 40.000 0.00 0.00 35.65 3.50
497 501 6.382859 TCTCTTCAGCACCACATATAAAGGTA 59.617 38.462 0.00 0.00 33.49 3.08
498 502 6.346096 TCTTCAGCACCACATATAAAGGTAC 58.654 40.000 0.00 0.00 33.49 3.34
499 503 4.689071 TCAGCACCACATATAAAGGTACG 58.311 43.478 0.00 0.00 33.49 3.67
500 504 4.160814 TCAGCACCACATATAAAGGTACGT 59.839 41.667 0.00 0.00 33.49 3.57
501 505 4.270084 CAGCACCACATATAAAGGTACGTG 59.730 45.833 0.00 0.00 33.49 4.49
505 509 5.272283 CCACATATAAAGGTACGTGGTCT 57.728 43.478 0.00 0.00 39.24 3.85
506 510 5.287226 CCACATATAAAGGTACGTGGTCTC 58.713 45.833 0.00 0.00 39.24 3.36
507 511 5.163488 CCACATATAAAGGTACGTGGTCTCA 60.163 44.000 0.00 0.00 39.24 3.27
508 512 5.747197 CACATATAAAGGTACGTGGTCTCAC 59.253 44.000 0.00 0.00 40.36 3.51
509 513 5.655532 ACATATAAAGGTACGTGGTCTCACT 59.344 40.000 0.00 0.00 41.53 3.41
510 514 4.715527 ATAAAGGTACGTGGTCTCACTC 57.284 45.455 0.00 0.00 41.53 3.51
511 515 1.991121 AAGGTACGTGGTCTCACTCA 58.009 50.000 0.00 0.00 41.53 3.41
512 516 1.535833 AGGTACGTGGTCTCACTCAG 58.464 55.000 0.00 0.00 41.53 3.35
513 517 0.109226 GGTACGTGGTCTCACTCAGC 60.109 60.000 0.00 0.00 41.53 4.26
514 518 0.109226 GTACGTGGTCTCACTCAGCC 60.109 60.000 0.00 0.00 41.53 4.85
515 519 0.538746 TACGTGGTCTCACTCAGCCA 60.539 55.000 0.00 0.00 41.53 4.75
531 535 4.686972 TCAGCCATTCTTGTCTTCTATCG 58.313 43.478 0.00 0.00 0.00 2.92
539 543 6.829229 TTCTTGTCTTCTATCGTTGGAGTA 57.171 37.500 0.00 0.00 0.00 2.59
556 560 3.162068 GAGTAACAACTCTCACGCTACG 58.838 50.000 0.00 0.00 34.12 3.51
561 565 2.810274 ACAACTCTCACGCTACGACTTA 59.190 45.455 0.00 0.00 0.00 2.24
580 584 9.194271 ACGACTTAGAGTTTTCAGAAGATTTAC 57.806 33.333 0.00 0.00 0.00 2.01
581 585 9.413048 CGACTTAGAGTTTTCAGAAGATTTACT 57.587 33.333 0.00 0.00 0.00 2.24
583 587 9.413048 ACTTAGAGTTTTCAGAAGATTTACTCG 57.587 33.333 0.00 0.00 34.07 4.18
584 588 9.413048 CTTAGAGTTTTCAGAAGATTTACTCGT 57.587 33.333 0.00 0.00 34.07 4.18
586 590 8.745464 AGAGTTTTCAGAAGATTTACTCGTAC 57.255 34.615 0.00 0.00 34.07 3.67
588 592 9.837525 GAGTTTTCAGAAGATTTACTCGTACTA 57.162 33.333 0.00 0.00 0.00 1.82
610 1577 7.379750 ACTAAATAGAAGGTGAGAGTTGTCAC 58.620 38.462 1.08 1.08 45.30 3.67
617 1584 2.610727 GGTGAGAGTTGTCACTGGTAGC 60.611 54.545 8.98 0.00 45.34 3.58
720 1725 0.889306 AAAAGAGACTCCCTCCGACG 59.111 55.000 0.00 0.00 42.97 5.12
722 1727 0.677414 AAGAGACTCCCTCCGACGTC 60.677 60.000 5.18 5.18 42.97 4.34
726 1731 2.272797 CTCCCTCCGACGTCCTCT 59.727 66.667 10.58 0.00 0.00 3.69
732 1737 0.391927 CTCCGACGTCCTCTCTGACT 60.392 60.000 10.58 0.00 32.97 3.41
733 1738 0.036448 TCCGACGTCCTCTCTGACTT 59.964 55.000 10.58 0.00 32.97 3.01
734 1739 0.448593 CCGACGTCCTCTCTGACTTC 59.551 60.000 10.58 0.00 32.97 3.01
735 1740 0.448593 CGACGTCCTCTCTGACTTCC 59.551 60.000 10.58 0.00 31.73 3.46
736 1741 1.535833 GACGTCCTCTCTGACTTCCA 58.464 55.000 3.51 0.00 32.97 3.53
737 1742 1.470890 GACGTCCTCTCTGACTTCCAG 59.529 57.143 3.51 0.00 44.27 3.86
738 1743 0.814457 CGTCCTCTCTGACTTCCAGG 59.186 60.000 0.00 0.00 43.12 4.45
782 1787 0.107800 TCGGTCCTCCTCTACGACTG 60.108 60.000 0.00 0.00 34.76 3.51
785 1790 1.451567 TCCTCCTCTACGACTGCCG 60.452 63.158 0.00 0.00 45.44 5.69
826 1836 1.480954 ACTTATCCTAGTGTGCGGTGG 59.519 52.381 0.00 0.00 0.00 4.61
839 1849 2.669133 CGGTGGGCCTCAATCCTGA 61.669 63.158 4.53 0.00 0.00 3.86
856 1866 2.613977 CCTGAGATCTCACCCACAACAC 60.614 54.545 21.67 0.00 35.46 3.32
857 1867 1.347707 TGAGATCTCACCCACAACACC 59.652 52.381 21.67 0.00 34.14 4.16
863 1873 2.976185 TCTCACCCACAACACCATTCTA 59.024 45.455 0.00 0.00 0.00 2.10
864 1874 3.392947 TCTCACCCACAACACCATTCTAA 59.607 43.478 0.00 0.00 0.00 2.10
874 1884 1.801771 CACCATTCTAAACGCCGTCAA 59.198 47.619 0.00 0.00 0.00 3.18
979 1989 5.569413 GTTTGCTCAAAAGAAAACGAGAGA 58.431 37.500 0.00 0.00 40.42 3.10
980 1990 5.409643 TTGCTCAAAAGAAAACGAGAGAG 57.590 39.130 0.00 0.00 0.00 3.20
981 1991 3.248602 TGCTCAAAAGAAAACGAGAGAGC 59.751 43.478 0.00 0.00 45.40 4.09
983 1993 4.260784 GCTCAAAAGAAAACGAGAGAGCAA 60.261 41.667 0.00 0.00 44.77 3.91
984 1994 5.730568 GCTCAAAAGAAAACGAGAGAGCAAA 60.731 40.000 0.00 0.00 44.77 3.68
985 1995 5.569413 TCAAAAGAAAACGAGAGAGCAAAC 58.431 37.500 0.00 0.00 0.00 2.93
986 1996 5.354234 TCAAAAGAAAACGAGAGAGCAAACT 59.646 36.000 0.00 0.00 0.00 2.66
987 1997 5.819825 AAAGAAAACGAGAGAGCAAACTT 57.180 34.783 0.00 0.00 0.00 2.66
988 1998 5.819825 AAGAAAACGAGAGAGCAAACTTT 57.180 34.783 0.00 0.00 0.00 2.66
989 1999 5.162000 AGAAAACGAGAGAGCAAACTTTG 57.838 39.130 0.00 0.00 0.00 2.77
990 2000 3.971032 AAACGAGAGAGCAAACTTTGG 57.029 42.857 3.69 0.00 0.00 3.28
991 2001 1.230324 ACGAGAGAGCAAACTTTGGC 58.770 50.000 3.69 0.00 0.00 4.52
992 2002 1.229428 CGAGAGAGCAAACTTTGGCA 58.771 50.000 3.69 0.00 0.00 4.92
993 2003 1.603802 CGAGAGAGCAAACTTTGGCAA 59.396 47.619 0.00 0.00 0.00 4.52
994 2004 2.603173 CGAGAGAGCAAACTTTGGCAAC 60.603 50.000 0.00 0.00 0.00 4.17
1013 2023 1.072331 ACAAACCATGCCGACTCTTCT 59.928 47.619 0.00 0.00 0.00 2.85
1019 2029 2.266554 CATGCCGACTCTTCTTCTGAC 58.733 52.381 0.00 0.00 0.00 3.51
1040 2050 1.670811 CTTGTTGTTGAGCCTGAACGT 59.329 47.619 0.00 0.00 0.00 3.99
1042 2052 2.479837 TGTTGTTGAGCCTGAACGTAG 58.520 47.619 0.00 0.00 0.00 3.51
1043 2053 1.194772 GTTGTTGAGCCTGAACGTAGC 59.805 52.381 0.00 0.00 0.00 3.58
1077 2102 0.613777 CGTTCTCCTACCAGGGCTTT 59.386 55.000 0.00 0.00 35.59 3.51
1098 2123 1.606885 CCACGGCGAACCTTACCCTA 61.607 60.000 16.62 0.00 0.00 3.53
1159 2185 0.954452 CACCAACTTCACTTCCCAGC 59.046 55.000 0.00 0.00 0.00 4.85
1371 2406 2.359169 CCTAGGCCTCCTCAACGCA 61.359 63.158 9.68 0.00 34.61 5.24
1423 2458 1.893786 GTGGAGCTCGACACCATCT 59.106 57.895 22.40 0.00 41.42 2.90
1690 2733 2.546795 GCCATTGACCTCTCCACTATCG 60.547 54.545 0.00 0.00 0.00 2.92
1791 2861 2.599281 TTCGACGGACCTGCTCCA 60.599 61.111 0.00 0.00 39.39 3.86
1806 2876 2.202492 CCACCGCTCGACTTCTCG 60.202 66.667 0.00 0.00 41.65 4.04
1878 2948 3.889538 TGTACATCGCTCTACCATTAGCT 59.110 43.478 0.00 0.00 36.56 3.32
1904 2974 3.558411 GCTCATCGCTGCGGTGTC 61.558 66.667 31.43 21.25 39.21 3.67
1911 2981 4.735132 GCTGCGGTGTCGGCTGTA 62.735 66.667 0.00 0.00 35.53 2.74
2019 3095 0.889186 ACTTGTTCCATGCCACCGAC 60.889 55.000 0.00 0.00 0.00 4.79
2148 3224 1.631388 TCAAGGCAAGGAATACGGGAA 59.369 47.619 0.00 0.00 0.00 3.97
2172 3248 0.955428 TTGCCGAAGTGGTGAGCATC 60.955 55.000 0.00 0.00 41.21 3.91
2238 3314 1.448985 GGCGCAATGGTGAACTTCTA 58.551 50.000 10.83 0.00 0.00 2.10
2241 3317 3.625764 GGCGCAATGGTGAACTTCTATTA 59.374 43.478 10.83 0.00 0.00 0.98
2461 3537 1.004918 CGGCTCGGAGACTTTGGTT 60.005 57.895 9.69 0.00 0.00 3.67
2646 3722 1.399714 TCGGGAGTGACGAGCATAAT 58.600 50.000 0.00 0.00 35.12 1.28
2718 3797 3.594603 ATCATCGATACGGTGGATTCC 57.405 47.619 0.00 0.00 38.63 3.01
2765 3844 5.821470 TGGAAGAGGTTAGTATCGTACTCAG 59.179 44.000 1.69 0.00 40.14 3.35
2835 3914 3.313249 TGCGAAAGGTCATGCAATATCTG 59.687 43.478 0.00 0.00 33.80 2.90
2848 3927 3.605634 CAATATCTGGACGGTGACCAAA 58.394 45.455 1.11 0.00 36.95 3.28
2873 3952 0.035056 CCTCATTTGGCTCCGACCTT 60.035 55.000 0.00 0.00 0.00 3.50
3020 4099 1.424493 GGGAGATGAAGCGTTGCTCG 61.424 60.000 0.00 0.00 38.25 5.03
3033 4112 3.093574 CGTTGCTCGCAAATTACATGAG 58.906 45.455 5.83 0.00 37.70 2.90
3038 4117 5.100751 GCTCGCAAATTACATGAGCTATT 57.899 39.130 0.00 0.00 46.45 1.73
3040 4119 6.658831 GCTCGCAAATTACATGAGCTATTTA 58.341 36.000 0.00 0.00 46.45 1.40
3042 4121 7.269937 GCTCGCAAATTACATGAGCTATTTATG 59.730 37.037 0.00 0.00 46.45 1.90
3043 4122 8.153479 TCGCAAATTACATGAGCTATTTATGT 57.847 30.769 0.00 9.43 38.48 2.29
3045 4124 8.684655 CGCAAATTACATGAGCTATTTATGTTG 58.315 33.333 0.00 5.04 36.52 3.33
3046 4125 8.482429 GCAAATTACATGAGCTATTTATGTTGC 58.518 33.333 0.00 9.58 36.52 4.17
3047 4126 9.740239 CAAATTACATGAGCTATTTATGTTGCT 57.260 29.630 0.00 0.00 36.52 3.91
3077 4165 7.718753 AGGGATTTAATTATCTTGTGCTCTCAG 59.281 37.037 0.00 0.00 0.00 3.35
3081 4169 8.668510 TTTAATTATCTTGTGCTCTCAGATCC 57.331 34.615 4.83 0.00 0.00 3.36
3088 4176 2.235650 TGTGCTCTCAGATCCCTCTTTG 59.764 50.000 0.00 0.00 0.00 2.77
3089 4177 1.209019 TGCTCTCAGATCCCTCTTTGC 59.791 52.381 0.00 0.00 0.00 3.68
3090 4178 1.209019 GCTCTCAGATCCCTCTTTGCA 59.791 52.381 0.00 0.00 0.00 4.08
3091 4179 2.903798 CTCTCAGATCCCTCTTTGCAC 58.096 52.381 0.00 0.00 0.00 4.57
3092 4180 1.205655 TCTCAGATCCCTCTTTGCACG 59.794 52.381 0.00 0.00 0.00 5.34
3093 4181 0.391661 TCAGATCCCTCTTTGCACGC 60.392 55.000 0.00 0.00 0.00 5.34
3103 4197 2.443957 CTTTGCACGCCTTGTCGTCC 62.444 60.000 0.00 0.00 41.21 4.79
3175 4269 9.193133 CTAGGTTATCATAGTGAAATGTTACCG 57.807 37.037 0.00 0.00 32.75 4.02
3176 4270 6.482308 AGGTTATCATAGTGAAATGTTACCGC 59.518 38.462 0.00 0.00 32.75 5.68
3177 4271 6.293244 GGTTATCATAGTGAAATGTTACCGCC 60.293 42.308 0.00 0.00 0.00 6.13
3178 4272 3.537580 TCATAGTGAAATGTTACCGCCC 58.462 45.455 0.00 0.00 0.00 6.13
3179 4273 2.406596 TAGTGAAATGTTACCGCCCC 57.593 50.000 0.00 0.00 0.00 5.80
3180 4274 0.402504 AGTGAAATGTTACCGCCCCA 59.597 50.000 0.00 0.00 0.00 4.96
3181 4275 1.005450 AGTGAAATGTTACCGCCCCAT 59.995 47.619 0.00 0.00 0.00 4.00
3182 4276 1.134175 GTGAAATGTTACCGCCCCATG 59.866 52.381 0.00 0.00 0.00 3.66
3183 4277 1.272203 TGAAATGTTACCGCCCCATGT 60.272 47.619 0.00 0.00 0.00 3.21
3184 4278 2.026169 TGAAATGTTACCGCCCCATGTA 60.026 45.455 0.00 0.00 0.00 2.29
3185 4279 3.219281 GAAATGTTACCGCCCCATGTAT 58.781 45.455 0.00 0.00 0.00 2.29
3186 4280 2.561478 ATGTTACCGCCCCATGTATC 57.439 50.000 0.00 0.00 0.00 2.24
3187 4281 1.205055 TGTTACCGCCCCATGTATCA 58.795 50.000 0.00 0.00 0.00 2.15
3188 4282 1.560146 TGTTACCGCCCCATGTATCAA 59.440 47.619 0.00 0.00 0.00 2.57
3189 4283 2.173782 TGTTACCGCCCCATGTATCAAT 59.826 45.455 0.00 0.00 0.00 2.57
3190 4284 3.219281 GTTACCGCCCCATGTATCAATT 58.781 45.455 0.00 0.00 0.00 2.32
3191 4285 2.452600 ACCGCCCCATGTATCAATTT 57.547 45.000 0.00 0.00 0.00 1.82
3192 4286 2.306847 ACCGCCCCATGTATCAATTTC 58.693 47.619 0.00 0.00 0.00 2.17
3193 4287 2.305928 CCGCCCCATGTATCAATTTCA 58.694 47.619 0.00 0.00 0.00 2.69
3194 4288 2.294233 CCGCCCCATGTATCAATTTCAG 59.706 50.000 0.00 0.00 0.00 3.02
3195 4289 2.951642 CGCCCCATGTATCAATTTCAGT 59.048 45.455 0.00 0.00 0.00 3.41
3196 4290 4.133820 CGCCCCATGTATCAATTTCAGTA 58.866 43.478 0.00 0.00 0.00 2.74
3197 4291 4.214119 CGCCCCATGTATCAATTTCAGTAG 59.786 45.833 0.00 0.00 0.00 2.57
3198 4292 5.133221 GCCCCATGTATCAATTTCAGTAGT 58.867 41.667 0.00 0.00 0.00 2.73
3199 4293 6.296026 GCCCCATGTATCAATTTCAGTAGTA 58.704 40.000 0.00 0.00 0.00 1.82
3200 4294 6.942576 GCCCCATGTATCAATTTCAGTAGTAT 59.057 38.462 0.00 0.00 0.00 2.12
3201 4295 7.448469 GCCCCATGTATCAATTTCAGTAGTATT 59.552 37.037 0.00 0.00 0.00 1.89
3202 4296 8.786898 CCCCATGTATCAATTTCAGTAGTATTG 58.213 37.037 0.00 0.00 0.00 1.90
3203 4297 8.786898 CCCATGTATCAATTTCAGTAGTATTGG 58.213 37.037 0.00 0.00 31.74 3.16
3204 4298 9.342308 CCATGTATCAATTTCAGTAGTATTGGT 57.658 33.333 0.00 0.00 31.74 3.67
3207 4301 9.952030 TGTATCAATTTCAGTAGTATTGGTTGA 57.048 29.630 9.60 9.60 31.74 3.18
3209 4303 7.359262 TCAATTTCAGTAGTATTGGTTGACG 57.641 36.000 0.00 0.00 31.74 4.35
3210 4304 6.932400 TCAATTTCAGTAGTATTGGTTGACGT 59.068 34.615 0.00 0.00 31.74 4.34
3211 4305 8.089597 TCAATTTCAGTAGTATTGGTTGACGTA 58.910 33.333 0.00 0.00 31.74 3.57
3212 4306 8.879759 CAATTTCAGTAGTATTGGTTGACGTAT 58.120 33.333 0.00 0.00 0.00 3.06
3214 4308 9.745880 ATTTCAGTAGTATTGGTTGACGTATAG 57.254 33.333 0.00 0.00 0.00 1.31
3215 4309 6.732154 TCAGTAGTATTGGTTGACGTATAGC 58.268 40.000 0.00 0.00 0.00 2.97
3216 4310 6.544931 TCAGTAGTATTGGTTGACGTATAGCT 59.455 38.462 0.00 0.00 0.00 3.32
3217 4311 7.716560 TCAGTAGTATTGGTTGACGTATAGCTA 59.283 37.037 0.00 0.00 0.00 3.32
3218 4312 8.016229 CAGTAGTATTGGTTGACGTATAGCTAG 58.984 40.741 0.00 0.00 0.00 3.42
3219 4313 6.328641 AGTATTGGTTGACGTATAGCTAGG 57.671 41.667 0.00 0.00 0.00 3.02
3220 4314 3.447918 TTGGTTGACGTATAGCTAGGC 57.552 47.619 0.00 0.00 0.00 3.93
3221 4315 1.684983 TGGTTGACGTATAGCTAGGCC 59.315 52.381 0.00 0.00 0.00 5.19
3222 4316 1.000618 GGTTGACGTATAGCTAGGCCC 59.999 57.143 0.00 0.00 0.00 5.80
3223 4317 1.000618 GTTGACGTATAGCTAGGCCCC 59.999 57.143 0.00 0.00 0.00 5.80
3224 4318 0.186630 TGACGTATAGCTAGGCCCCA 59.813 55.000 0.00 0.00 0.00 4.96
3225 4319 1.203137 TGACGTATAGCTAGGCCCCAT 60.203 52.381 0.00 0.00 0.00 4.00
3226 4320 1.204941 GACGTATAGCTAGGCCCCATG 59.795 57.143 0.00 0.00 0.00 3.66
3227 4321 0.108138 CGTATAGCTAGGCCCCATGC 60.108 60.000 0.00 0.00 40.16 4.06
3228 4322 0.984230 GTATAGCTAGGCCCCATGCA 59.016 55.000 0.00 0.00 43.89 3.96
3229 4323 0.984230 TATAGCTAGGCCCCATGCAC 59.016 55.000 0.00 0.00 43.89 4.57
3230 4324 1.061905 ATAGCTAGGCCCCATGCACA 61.062 55.000 0.00 0.00 43.89 4.57
3231 4325 1.983119 TAGCTAGGCCCCATGCACAC 61.983 60.000 0.00 0.00 43.89 3.82
3232 4326 3.001514 CTAGGCCCCATGCACACT 58.998 61.111 0.00 0.00 43.89 3.55
3233 4327 1.304282 CTAGGCCCCATGCACACTT 59.696 57.895 0.00 0.00 43.89 3.16
3234 4328 0.323725 CTAGGCCCCATGCACACTTT 60.324 55.000 0.00 0.00 43.89 2.66
3235 4329 0.114168 TAGGCCCCATGCACACTTTT 59.886 50.000 0.00 0.00 43.89 2.27
3236 4330 0.763986 AGGCCCCATGCACACTTTTT 60.764 50.000 0.00 0.00 43.89 1.94
3237 4331 0.972883 GGCCCCATGCACACTTTTTA 59.027 50.000 0.00 0.00 43.89 1.52
3238 4332 1.554617 GGCCCCATGCACACTTTTTAT 59.445 47.619 0.00 0.00 43.89 1.40
3239 4333 2.418609 GGCCCCATGCACACTTTTTATC 60.419 50.000 0.00 0.00 43.89 1.75
3240 4334 2.233431 GCCCCATGCACACTTTTTATCA 59.767 45.455 0.00 0.00 40.77 2.15
3241 4335 3.676873 GCCCCATGCACACTTTTTATCAG 60.677 47.826 0.00 0.00 40.77 2.90
3242 4336 3.514645 CCCATGCACACTTTTTATCAGC 58.485 45.455 0.00 0.00 0.00 4.26
3243 4337 3.056678 CCCATGCACACTTTTTATCAGCA 60.057 43.478 0.00 0.00 34.78 4.41
3244 4338 4.171005 CCATGCACACTTTTTATCAGCAG 58.829 43.478 0.00 0.00 33.69 4.24
3245 4339 3.921119 TGCACACTTTTTATCAGCAGG 57.079 42.857 0.00 0.00 0.00 4.85
3246 4340 3.221771 TGCACACTTTTTATCAGCAGGT 58.778 40.909 0.00 0.00 0.00 4.00
3247 4341 3.253188 TGCACACTTTTTATCAGCAGGTC 59.747 43.478 0.00 0.00 0.00 3.85
3248 4342 3.253188 GCACACTTTTTATCAGCAGGTCA 59.747 43.478 0.00 0.00 0.00 4.02
3249 4343 4.261572 GCACACTTTTTATCAGCAGGTCAA 60.262 41.667 0.00 0.00 0.00 3.18
3250 4344 5.455392 CACACTTTTTATCAGCAGGTCAAG 58.545 41.667 0.00 0.00 0.00 3.02
3251 4345 5.009010 CACACTTTTTATCAGCAGGTCAAGT 59.991 40.000 0.00 0.00 0.00 3.16
3252 4346 5.594317 ACACTTTTTATCAGCAGGTCAAGTT 59.406 36.000 0.00 0.00 0.00 2.66
3253 4347 6.096846 ACACTTTTTATCAGCAGGTCAAGTTT 59.903 34.615 0.00 0.00 0.00 2.66
3254 4348 6.418819 CACTTTTTATCAGCAGGTCAAGTTTG 59.581 38.462 0.00 0.00 0.00 2.93
3255 4349 6.096846 ACTTTTTATCAGCAGGTCAAGTTTGT 59.903 34.615 0.00 0.00 0.00 2.83
3256 4350 6.463995 TTTTATCAGCAGGTCAAGTTTGTT 57.536 33.333 0.00 0.00 0.00 2.83
3257 4351 5.689383 TTATCAGCAGGTCAAGTTTGTTC 57.311 39.130 0.00 0.00 0.00 3.18
3258 4352 3.281727 TCAGCAGGTCAAGTTTGTTCT 57.718 42.857 0.00 0.00 0.00 3.01
3259 4353 4.415881 TCAGCAGGTCAAGTTTGTTCTA 57.584 40.909 0.00 0.00 0.00 2.10
3260 4354 4.380531 TCAGCAGGTCAAGTTTGTTCTAG 58.619 43.478 0.00 0.00 0.00 2.43
3261 4355 4.100963 TCAGCAGGTCAAGTTTGTTCTAGA 59.899 41.667 0.00 0.00 0.00 2.43
3262 4356 4.816385 CAGCAGGTCAAGTTTGTTCTAGAA 59.184 41.667 0.00 0.00 0.00 2.10
3263 4357 5.296780 CAGCAGGTCAAGTTTGTTCTAGAAA 59.703 40.000 6.78 0.00 0.00 2.52
3264 4358 5.529060 AGCAGGTCAAGTTTGTTCTAGAAAG 59.471 40.000 6.78 0.00 0.00 2.62
3265 4359 5.278022 GCAGGTCAAGTTTGTTCTAGAAAGG 60.278 44.000 6.78 0.00 0.00 3.11
3266 4360 5.823045 CAGGTCAAGTTTGTTCTAGAAAGGT 59.177 40.000 6.78 0.00 0.00 3.50
3267 4361 6.017852 CAGGTCAAGTTTGTTCTAGAAAGGTC 60.018 42.308 6.78 0.00 0.00 3.85
3268 4362 6.056236 GGTCAAGTTTGTTCTAGAAAGGTCT 58.944 40.000 6.78 1.57 37.95 3.85
3269 4363 6.203145 GGTCAAGTTTGTTCTAGAAAGGTCTC 59.797 42.308 6.78 0.00 35.12 3.36
3270 4364 5.983720 TCAAGTTTGTTCTAGAAAGGTCTCG 59.016 40.000 6.78 0.00 35.12 4.04
3271 4365 4.884247 AGTTTGTTCTAGAAAGGTCTCGG 58.116 43.478 6.78 0.00 35.12 4.63
3272 4366 4.587684 AGTTTGTTCTAGAAAGGTCTCGGA 59.412 41.667 6.78 0.00 35.12 4.55
3273 4367 5.070047 AGTTTGTTCTAGAAAGGTCTCGGAA 59.930 40.000 6.78 0.00 35.12 4.30
3274 4368 5.540400 TTGTTCTAGAAAGGTCTCGGAAA 57.460 39.130 6.78 0.00 35.12 3.13
3275 4369 5.740290 TGTTCTAGAAAGGTCTCGGAAAT 57.260 39.130 6.78 0.00 35.12 2.17
3276 4370 6.110411 TGTTCTAGAAAGGTCTCGGAAATT 57.890 37.500 6.78 0.00 35.12 1.82
3277 4371 6.531021 TGTTCTAGAAAGGTCTCGGAAATTT 58.469 36.000 6.78 0.00 35.12 1.82
3278 4372 6.996282 TGTTCTAGAAAGGTCTCGGAAATTTT 59.004 34.615 6.78 0.00 35.12 1.82
3279 4373 7.501225 TGTTCTAGAAAGGTCTCGGAAATTTTT 59.499 33.333 6.78 0.00 35.12 1.94
3280 4374 8.996271 GTTCTAGAAAGGTCTCGGAAATTTTTA 58.004 33.333 6.78 0.00 35.12 1.52
3281 4375 9.563748 TTCTAGAAAGGTCTCGGAAATTTTTAA 57.436 29.630 1.68 0.00 35.12 1.52
3282 4376 9.734984 TCTAGAAAGGTCTCGGAAATTTTTAAT 57.265 29.630 0.00 0.00 35.12 1.40
3288 4382 8.827177 AGGTCTCGGAAATTTTTAATTTTTCC 57.173 30.769 8.08 8.08 43.17 3.13
3289 4383 8.647796 AGGTCTCGGAAATTTTTAATTTTTCCT 58.352 29.630 13.93 0.00 44.00 3.36
3290 4384 9.268268 GGTCTCGGAAATTTTTAATTTTTCCTT 57.732 29.630 13.93 0.00 44.00 3.36
3338 4432 7.723172 AGAAGAGTTTGATTTGGAGTCTGATTT 59.277 33.333 0.00 0.00 0.00 2.17
3340 4434 6.774656 AGAGTTTGATTTGGAGTCTGATTTGT 59.225 34.615 0.00 0.00 0.00 2.83
3349 4443 4.164221 TGGAGTCTGATTTGTATCCCTTCC 59.836 45.833 0.00 0.00 0.00 3.46
3358 4452 3.194005 TGTATCCCTTCCGAATCTTGC 57.806 47.619 0.00 0.00 0.00 4.01
3362 4456 0.393537 CCCTTCCGAATCTTGCAGCT 60.394 55.000 0.00 0.00 0.00 4.24
3374 4468 1.142465 CTTGCAGCTGGGGAGATATGT 59.858 52.381 17.12 0.00 0.00 2.29
3376 4470 2.407562 TGCAGCTGGGGAGATATGTTA 58.592 47.619 17.12 0.00 0.00 2.41
3377 4471 2.369860 TGCAGCTGGGGAGATATGTTAG 59.630 50.000 17.12 0.00 0.00 2.34
3379 4473 3.578716 GCAGCTGGGGAGATATGTTAGTA 59.421 47.826 17.12 0.00 0.00 1.82
3380 4474 4.223923 GCAGCTGGGGAGATATGTTAGTAT 59.776 45.833 17.12 0.00 0.00 2.12
3381 4475 5.422331 GCAGCTGGGGAGATATGTTAGTATA 59.578 44.000 17.12 0.00 0.00 1.47
3383 4477 7.551585 CAGCTGGGGAGATATGTTAGTATAAG 58.448 42.308 5.57 0.00 0.00 1.73
3463 4571 1.710013 TTCGCTTGACGTTGGATCTC 58.290 50.000 0.00 0.00 44.19 2.75
3485 4593 0.892755 ATCCTGCGTTAACCGTGAGA 59.107 50.000 0.00 0.00 39.32 3.27
3618 4726 5.475719 TCAACTCGTGTATAACTTCCCTTG 58.524 41.667 0.00 0.00 0.00 3.61
3709 4817 4.823442 TCAACCGACTACTACTCTGTCAAA 59.177 41.667 0.00 0.00 0.00 2.69
3768 4876 0.784778 GCGTTCAACTTCACTCTCCG 59.215 55.000 0.00 0.00 0.00 4.63
3799 4907 5.388408 ACAAAGGTTTGGTGTACGAAAAA 57.612 34.783 7.35 0.00 42.34 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.868415 ACTTCTAACAGTGACACATTTCTACTC 59.132 37.037 8.59 0.00 0.00 2.59
1 2 7.727181 ACTTCTAACAGTGACACATTTCTACT 58.273 34.615 8.59 0.00 0.00 2.57
2 3 7.652105 TGACTTCTAACAGTGACACATTTCTAC 59.348 37.037 8.59 0.00 0.00 2.59
3 4 7.652105 GTGACTTCTAACAGTGACACATTTCTA 59.348 37.037 8.59 0.00 31.69 2.10
4 5 6.480320 GTGACTTCTAACAGTGACACATTTCT 59.520 38.462 8.59 0.00 31.69 2.52
5 6 6.257849 TGTGACTTCTAACAGTGACACATTTC 59.742 38.462 8.59 0.00 36.16 2.17
6 7 6.112734 TGTGACTTCTAACAGTGACACATTT 58.887 36.000 8.59 2.74 36.16 2.32
7 8 5.670485 TGTGACTTCTAACAGTGACACATT 58.330 37.500 8.59 4.42 36.16 2.71
8 9 5.276461 TGTGACTTCTAACAGTGACACAT 57.724 39.130 8.59 0.00 36.16 3.21
9 10 4.682787 CTGTGACTTCTAACAGTGACACA 58.317 43.478 8.59 0.00 36.16 3.72
10 11 3.491267 GCTGTGACTTCTAACAGTGACAC 59.509 47.826 0.00 0.00 44.59 3.67
11 12 3.384789 AGCTGTGACTTCTAACAGTGACA 59.615 43.478 0.00 0.00 44.59 3.58
12 13 3.983741 AGCTGTGACTTCTAACAGTGAC 58.016 45.455 0.00 0.00 44.59 3.67
13 14 4.320275 CGTAGCTGTGACTTCTAACAGTGA 60.320 45.833 0.00 0.00 44.59 3.41
14 15 3.914966 CGTAGCTGTGACTTCTAACAGTG 59.085 47.826 0.00 0.00 44.59 3.66
34 35 5.998981 ACTATGATTCGAGAGGAAGATACGT 59.001 40.000 0.00 0.00 38.24 3.57
37 38 5.770162 TGCACTATGATTCGAGAGGAAGATA 59.230 40.000 0.00 0.00 38.24 1.98
44 45 4.208873 GCTCTTTGCACTATGATTCGAGAG 59.791 45.833 0.00 0.00 42.31 3.20
49 50 2.289002 CGGGCTCTTTGCACTATGATTC 59.711 50.000 0.00 0.00 44.45 2.52
60 61 2.032528 TGGACTGCGGGCTCTTTG 59.967 61.111 0.00 0.00 0.00 2.77
71 72 6.588719 TTTTCTATGGGAAAATGTGGACTG 57.411 37.500 0.00 0.00 45.54 3.51
84 87 7.334671 GTGAGACCTCTTTTACTTTTCTATGGG 59.665 40.741 0.00 0.00 0.00 4.00
123 126 6.154021 TGGTAGAAAGCTACTCCGTAGAAAAT 59.846 38.462 5.28 0.00 45.10 1.82
139 142 3.402110 TGTCACTGCACATGGTAGAAAG 58.598 45.455 0.00 0.00 32.90 2.62
179 182 0.179240 GCAAGACGCAAGATCGTGTG 60.179 55.000 18.83 18.83 43.42 3.82
185 188 2.042831 GCTGGGCAAGACGCAAGAT 61.043 57.895 0.00 0.00 45.17 2.40
228 231 2.563471 ATTCTCTGGTACGTTCTCGC 57.437 50.000 0.00 0.00 41.18 5.03
230 233 3.380637 TGCCTATTCTCTGGTACGTTCTC 59.619 47.826 0.00 0.00 0.00 2.87
231 234 3.362706 TGCCTATTCTCTGGTACGTTCT 58.637 45.455 0.00 0.00 0.00 3.01
232 235 3.795623 TGCCTATTCTCTGGTACGTTC 57.204 47.619 0.00 0.00 0.00 3.95
233 236 4.442706 CATTGCCTATTCTCTGGTACGTT 58.557 43.478 0.00 0.00 0.00 3.99
234 237 3.741388 GCATTGCCTATTCTCTGGTACGT 60.741 47.826 0.00 0.00 0.00 3.57
235 238 2.802816 GCATTGCCTATTCTCTGGTACG 59.197 50.000 0.00 0.00 0.00 3.67
236 239 3.142174 GGCATTGCCTATTCTCTGGTAC 58.858 50.000 20.66 0.00 46.69 3.34
237 240 3.492102 GGCATTGCCTATTCTCTGGTA 57.508 47.619 20.66 0.00 46.69 3.25
238 241 2.355010 GGCATTGCCTATTCTCTGGT 57.645 50.000 20.66 0.00 46.69 4.00
256 260 4.410400 GTGGTCTGGGGCGGAAGG 62.410 72.222 0.00 0.00 0.00 3.46
268 272 4.699522 AAAGCGGCCGGAGTGGTC 62.700 66.667 29.38 8.07 41.21 4.02
281 285 3.614588 GCCGTGGATATTTTACGAAAGC 58.385 45.455 8.36 1.96 40.01 3.51
282 286 3.552699 TCGCCGTGGATATTTTACGAAAG 59.447 43.478 8.36 1.88 40.01 2.62
283 287 3.306703 GTCGCCGTGGATATTTTACGAAA 59.693 43.478 8.36 0.00 40.01 3.46
284 288 2.859538 GTCGCCGTGGATATTTTACGAA 59.140 45.455 8.36 0.00 40.01 3.85
285 289 2.462889 GTCGCCGTGGATATTTTACGA 58.537 47.619 8.36 0.00 40.01 3.43
286 290 1.188573 CGTCGCCGTGGATATTTTACG 59.811 52.381 0.00 0.00 37.55 3.18
287 291 2.462889 TCGTCGCCGTGGATATTTTAC 58.537 47.619 0.00 0.00 35.01 2.01
288 292 2.859538 GTTCGTCGCCGTGGATATTTTA 59.140 45.455 0.00 0.00 35.01 1.52
289 293 1.662122 GTTCGTCGCCGTGGATATTTT 59.338 47.619 0.00 0.00 35.01 1.82
290 294 1.134907 AGTTCGTCGCCGTGGATATTT 60.135 47.619 0.00 0.00 35.01 1.40
291 295 0.458669 AGTTCGTCGCCGTGGATATT 59.541 50.000 0.00 0.00 35.01 1.28
292 296 0.030369 GAGTTCGTCGCCGTGGATAT 59.970 55.000 0.00 0.00 35.01 1.63
293 297 1.430632 GAGTTCGTCGCCGTGGATA 59.569 57.895 0.00 0.00 35.01 2.59
302 306 4.148230 CGAAGGTGGAGTTCGTCG 57.852 61.111 0.00 0.00 41.50 5.12
327 331 0.670546 CGCAAAGGACCGTGATCTGT 60.671 55.000 2.63 0.00 0.00 3.41
335 339 1.079127 AGATCACCGCAAAGGACCG 60.079 57.895 0.00 0.00 45.00 4.79
351 355 2.280797 GTGTTCAGGCGCCACAGA 60.281 61.111 31.54 20.50 0.00 3.41
352 356 1.723608 TTTGTGTTCAGGCGCCACAG 61.724 55.000 31.54 18.31 39.96 3.66
353 357 1.106351 ATTTGTGTTCAGGCGCCACA 61.106 50.000 31.54 21.94 37.32 4.17
354 358 0.387239 GATTTGTGTTCAGGCGCCAC 60.387 55.000 31.54 19.25 0.00 5.01
355 359 0.821301 TGATTTGTGTTCAGGCGCCA 60.821 50.000 31.54 5.56 0.00 5.69
356 360 0.109597 CTGATTTGTGTTCAGGCGCC 60.110 55.000 21.89 21.89 37.53 6.53
357 361 0.874390 TCTGATTTGTGTTCAGGCGC 59.126 50.000 0.00 0.00 40.80 6.53
358 362 2.416747 TCTCTGATTTGTGTTCAGGCG 58.583 47.619 1.23 0.00 40.80 5.52
359 363 4.516698 TCTTTCTCTGATTTGTGTTCAGGC 59.483 41.667 1.23 0.00 40.80 4.85
360 364 5.528690 TGTCTTTCTCTGATTTGTGTTCAGG 59.471 40.000 1.23 0.00 40.80 3.86
361 365 6.609237 TGTCTTTCTCTGATTTGTGTTCAG 57.391 37.500 0.00 0.00 41.61 3.02
362 366 7.420002 CAATGTCTTTCTCTGATTTGTGTTCA 58.580 34.615 0.00 0.00 0.00 3.18
363 367 6.860023 CCAATGTCTTTCTCTGATTTGTGTTC 59.140 38.462 0.00 0.00 0.00 3.18
364 368 6.322201 ACCAATGTCTTTCTCTGATTTGTGTT 59.678 34.615 0.00 0.00 0.00 3.32
365 369 5.829924 ACCAATGTCTTTCTCTGATTTGTGT 59.170 36.000 0.00 0.00 0.00 3.72
366 370 6.147581 CACCAATGTCTTTCTCTGATTTGTG 58.852 40.000 0.00 0.00 0.00 3.33
367 371 5.829924 ACACCAATGTCTTTCTCTGATTTGT 59.170 36.000 0.00 0.00 31.55 2.83
368 372 6.323203 ACACCAATGTCTTTCTCTGATTTG 57.677 37.500 0.00 0.00 31.55 2.32
369 373 6.966534 AACACCAATGTCTTTCTCTGATTT 57.033 33.333 0.00 0.00 38.45 2.17
370 374 6.966534 AAACACCAATGTCTTTCTCTGATT 57.033 33.333 0.00 0.00 38.45 2.57
371 375 6.547141 TCAAAACACCAATGTCTTTCTCTGAT 59.453 34.615 0.00 0.00 38.45 2.90
372 376 5.885352 TCAAAACACCAATGTCTTTCTCTGA 59.115 36.000 0.00 0.00 38.45 3.27
373 377 6.135290 TCAAAACACCAATGTCTTTCTCTG 57.865 37.500 0.00 0.00 38.45 3.35
374 378 5.300286 CCTCAAAACACCAATGTCTTTCTCT 59.700 40.000 0.00 0.00 38.45 3.10
375 379 5.067805 ACCTCAAAACACCAATGTCTTTCTC 59.932 40.000 0.00 0.00 38.45 2.87
376 380 4.956075 ACCTCAAAACACCAATGTCTTTCT 59.044 37.500 0.00 0.00 38.45 2.52
377 381 5.262588 ACCTCAAAACACCAATGTCTTTC 57.737 39.130 0.00 0.00 38.45 2.62
378 382 5.675684 AACCTCAAAACACCAATGTCTTT 57.324 34.783 0.00 0.00 38.45 2.52
379 383 5.220970 CGTAACCTCAAAACACCAATGTCTT 60.221 40.000 0.00 0.00 38.45 3.01
380 384 4.274950 CGTAACCTCAAAACACCAATGTCT 59.725 41.667 0.00 0.00 38.45 3.41
381 385 4.035909 ACGTAACCTCAAAACACCAATGTC 59.964 41.667 0.00 0.00 38.45 3.06
382 386 3.949113 ACGTAACCTCAAAACACCAATGT 59.051 39.130 0.00 0.00 42.46 2.71
383 387 4.561735 ACGTAACCTCAAAACACCAATG 57.438 40.909 0.00 0.00 0.00 2.82
384 388 4.214758 GCTACGTAACCTCAAAACACCAAT 59.785 41.667 0.00 0.00 0.00 3.16
385 389 3.560896 GCTACGTAACCTCAAAACACCAA 59.439 43.478 0.00 0.00 0.00 3.67
386 390 3.132925 GCTACGTAACCTCAAAACACCA 58.867 45.455 0.00 0.00 0.00 4.17
387 391 3.396560 AGCTACGTAACCTCAAAACACC 58.603 45.455 0.00 0.00 0.00 4.16
388 392 3.431233 GGAGCTACGTAACCTCAAAACAC 59.569 47.826 18.94 3.45 0.00 3.32
389 393 3.555586 GGGAGCTACGTAACCTCAAAACA 60.556 47.826 18.94 0.00 0.00 2.83
390 394 2.998670 GGGAGCTACGTAACCTCAAAAC 59.001 50.000 18.94 6.74 0.00 2.43
391 395 2.027837 GGGGAGCTACGTAACCTCAAAA 60.028 50.000 18.94 0.00 0.00 2.44
392 396 1.551883 GGGGAGCTACGTAACCTCAAA 59.448 52.381 18.94 0.00 0.00 2.69
393 397 1.188863 GGGGAGCTACGTAACCTCAA 58.811 55.000 18.94 0.00 0.00 3.02
394 398 0.040058 TGGGGAGCTACGTAACCTCA 59.960 55.000 18.94 14.95 0.00 3.86
395 399 0.459078 GTGGGGAGCTACGTAACCTC 59.541 60.000 12.27 12.27 0.00 3.85
396 400 0.251922 TGTGGGGAGCTACGTAACCT 60.252 55.000 0.00 0.00 0.00 3.50
397 401 0.175073 CTGTGGGGAGCTACGTAACC 59.825 60.000 0.00 0.73 0.00 2.85
398 402 1.180029 TCTGTGGGGAGCTACGTAAC 58.820 55.000 0.00 0.00 0.00 2.50
399 403 2.029623 GATCTGTGGGGAGCTACGTAA 58.970 52.381 0.00 0.00 0.00 3.18
400 404 1.064240 TGATCTGTGGGGAGCTACGTA 60.064 52.381 0.00 0.00 0.00 3.57
401 405 0.324368 TGATCTGTGGGGAGCTACGT 60.324 55.000 0.00 0.00 0.00 3.57
402 406 0.103208 GTGATCTGTGGGGAGCTACG 59.897 60.000 0.00 0.00 0.00 3.51
403 407 1.137872 CTGTGATCTGTGGGGAGCTAC 59.862 57.143 0.00 0.00 0.00 3.58
404 408 1.007118 TCTGTGATCTGTGGGGAGCTA 59.993 52.381 0.00 0.00 0.00 3.32
405 409 0.252421 TCTGTGATCTGTGGGGAGCT 60.252 55.000 0.00 0.00 0.00 4.09
406 410 0.107945 GTCTGTGATCTGTGGGGAGC 60.108 60.000 0.00 0.00 0.00 4.70
407 411 1.566211 AGTCTGTGATCTGTGGGGAG 58.434 55.000 0.00 0.00 0.00 4.30
408 412 2.919772 TAGTCTGTGATCTGTGGGGA 57.080 50.000 0.00 0.00 0.00 4.81
409 413 5.614324 TTTATAGTCTGTGATCTGTGGGG 57.386 43.478 0.00 0.00 0.00 4.96
410 414 7.989741 AGATTTTTATAGTCTGTGATCTGTGGG 59.010 37.037 0.00 0.00 0.00 4.61
411 415 8.954950 AGATTTTTATAGTCTGTGATCTGTGG 57.045 34.615 0.00 0.00 0.00 4.17
413 417 9.757227 GCTAGATTTTTATAGTCTGTGATCTGT 57.243 33.333 0.00 0.00 0.00 3.41
414 418 9.755804 TGCTAGATTTTTATAGTCTGTGATCTG 57.244 33.333 0.00 0.00 0.00 2.90
421 425 9.928236 GCTCTTTTGCTAGATTTTTATAGTCTG 57.072 33.333 0.00 0.00 0.00 3.51
422 426 9.672673 TGCTCTTTTGCTAGATTTTTATAGTCT 57.327 29.630 0.00 0.00 0.00 3.24
429 433 9.762933 TTTTACATGCTCTTTTGCTAGATTTTT 57.237 25.926 0.00 0.00 0.00 1.94
430 434 9.762933 TTTTTACATGCTCTTTTGCTAGATTTT 57.237 25.926 0.00 0.00 0.00 1.82
431 435 9.415544 CTTTTTACATGCTCTTTTGCTAGATTT 57.584 29.630 0.00 0.00 0.00 2.17
432 436 8.796475 TCTTTTTACATGCTCTTTTGCTAGATT 58.204 29.630 0.00 0.00 0.00 2.40
433 437 8.340618 TCTTTTTACATGCTCTTTTGCTAGAT 57.659 30.769 0.00 0.00 0.00 1.98
434 438 7.744087 TCTTTTTACATGCTCTTTTGCTAGA 57.256 32.000 0.00 0.00 0.00 2.43
435 439 7.540055 CCTTCTTTTTACATGCTCTTTTGCTAG 59.460 37.037 0.00 0.00 0.00 3.42
436 440 7.014230 ACCTTCTTTTTACATGCTCTTTTGCTA 59.986 33.333 0.00 0.00 0.00 3.49
437 441 6.183360 ACCTTCTTTTTACATGCTCTTTTGCT 60.183 34.615 0.00 0.00 0.00 3.91
438 442 5.985530 ACCTTCTTTTTACATGCTCTTTTGC 59.014 36.000 0.00 0.00 0.00 3.68
439 443 7.202526 TCACCTTCTTTTTACATGCTCTTTTG 58.797 34.615 0.00 0.00 0.00 2.44
440 444 7.346751 TCACCTTCTTTTTACATGCTCTTTT 57.653 32.000 0.00 0.00 0.00 2.27
441 445 6.959639 TCACCTTCTTTTTACATGCTCTTT 57.040 33.333 0.00 0.00 0.00 2.52
442 446 7.231317 TCAATCACCTTCTTTTTACATGCTCTT 59.769 33.333 0.00 0.00 0.00 2.85
443 447 6.716628 TCAATCACCTTCTTTTTACATGCTCT 59.283 34.615 0.00 0.00 0.00 4.09
444 448 6.913170 TCAATCACCTTCTTTTTACATGCTC 58.087 36.000 0.00 0.00 0.00 4.26
445 449 6.899393 TCAATCACCTTCTTTTTACATGCT 57.101 33.333 0.00 0.00 0.00 3.79
446 450 6.035327 GCATCAATCACCTTCTTTTTACATGC 59.965 38.462 0.00 0.00 0.00 4.06
447 451 7.318141 AGCATCAATCACCTTCTTTTTACATG 58.682 34.615 0.00 0.00 0.00 3.21
448 452 7.395489 AGAGCATCAATCACCTTCTTTTTACAT 59.605 33.333 0.00 0.00 37.82 2.29
449 453 6.716628 AGAGCATCAATCACCTTCTTTTTACA 59.283 34.615 0.00 0.00 37.82 2.41
450 454 7.120432 AGAGAGCATCAATCACCTTCTTTTTAC 59.880 37.037 0.00 0.00 37.82 2.01
451 455 7.170965 AGAGAGCATCAATCACCTTCTTTTTA 58.829 34.615 0.00 0.00 37.82 1.52
452 456 6.008960 AGAGAGCATCAATCACCTTCTTTTT 58.991 36.000 0.00 0.00 37.82 1.94
453 457 5.568392 AGAGAGCATCAATCACCTTCTTTT 58.432 37.500 0.00 0.00 37.82 2.27
454 458 5.176741 AGAGAGCATCAATCACCTTCTTT 57.823 39.130 0.00 0.00 37.82 2.52
455 459 4.840716 AGAGAGCATCAATCACCTTCTT 57.159 40.909 0.00 0.00 37.82 2.52
456 460 4.224594 TGAAGAGAGCATCAATCACCTTCT 59.775 41.667 0.00 0.00 37.82 2.85
457 461 4.511527 TGAAGAGAGCATCAATCACCTTC 58.488 43.478 0.00 0.00 37.82 3.46
458 462 4.515361 CTGAAGAGAGCATCAATCACCTT 58.485 43.478 0.00 0.00 37.82 3.50
459 463 3.682155 GCTGAAGAGAGCATCAATCACCT 60.682 47.826 0.00 0.00 38.95 4.00
460 464 2.613133 GCTGAAGAGAGCATCAATCACC 59.387 50.000 0.00 0.00 38.95 4.02
461 465 3.268330 TGCTGAAGAGAGCATCAATCAC 58.732 45.455 0.00 0.00 44.16 3.06
462 466 3.622166 TGCTGAAGAGAGCATCAATCA 57.378 42.857 0.00 0.00 44.16 2.57
469 473 0.689055 ATGTGGTGCTGAAGAGAGCA 59.311 50.000 0.00 0.00 46.87 4.26
470 474 2.680312 TATGTGGTGCTGAAGAGAGC 57.320 50.000 0.00 0.00 39.62 4.09
471 475 5.757320 CCTTTATATGTGGTGCTGAAGAGAG 59.243 44.000 0.00 0.00 0.00 3.20
472 476 5.189736 ACCTTTATATGTGGTGCTGAAGAGA 59.810 40.000 0.00 0.00 32.16 3.10
473 477 5.431765 ACCTTTATATGTGGTGCTGAAGAG 58.568 41.667 0.00 0.00 32.16 2.85
474 478 5.435686 ACCTTTATATGTGGTGCTGAAGA 57.564 39.130 0.00 0.00 32.16 2.87
475 479 5.234329 CGTACCTTTATATGTGGTGCTGAAG 59.766 44.000 0.00 0.00 34.94 3.02
476 480 5.113383 CGTACCTTTATATGTGGTGCTGAA 58.887 41.667 0.00 0.00 34.94 3.02
477 481 4.160814 ACGTACCTTTATATGTGGTGCTGA 59.839 41.667 0.00 0.00 34.94 4.26
478 482 4.270084 CACGTACCTTTATATGTGGTGCTG 59.730 45.833 0.00 0.00 38.09 4.41
479 483 4.439057 CACGTACCTTTATATGTGGTGCT 58.561 43.478 0.00 0.00 38.09 4.40
480 484 4.789095 CACGTACCTTTATATGTGGTGC 57.211 45.455 0.00 0.00 38.09 5.01
484 488 5.747197 GTGAGACCACGTACCTTTATATGTG 59.253 44.000 0.00 0.00 40.39 3.21
485 489 5.899299 GTGAGACCACGTACCTTTATATGT 58.101 41.667 0.00 0.00 33.10 2.29
499 503 1.277557 AGAATGGCTGAGTGAGACCAC 59.722 52.381 0.00 0.00 43.50 4.16
500 504 1.649321 AGAATGGCTGAGTGAGACCA 58.351 50.000 0.00 0.00 33.88 4.02
501 505 2.289945 ACAAGAATGGCTGAGTGAGACC 60.290 50.000 0.00 0.00 0.00 3.85
502 506 2.999355 GACAAGAATGGCTGAGTGAGAC 59.001 50.000 0.00 0.00 0.00 3.36
503 507 2.902486 AGACAAGAATGGCTGAGTGAGA 59.098 45.455 0.00 0.00 45.69 3.27
504 508 3.331478 AGACAAGAATGGCTGAGTGAG 57.669 47.619 0.00 0.00 45.69 3.51
506 510 9.915705 ACGATAGAAGACAAGAATGGCTGAGTG 62.916 44.444 0.00 0.00 42.41 3.51
507 511 8.028688 ACGATAGAAGACAAGAATGGCTGAGT 62.029 42.308 0.00 0.00 42.41 3.41
508 512 5.680922 ACGATAGAAGACAAGAATGGCTGAG 60.681 44.000 0.00 0.00 42.41 3.35
509 513 4.160439 ACGATAGAAGACAAGAATGGCTGA 59.840 41.667 0.00 0.00 42.41 4.26
510 514 4.437239 ACGATAGAAGACAAGAATGGCTG 58.563 43.478 0.00 0.00 42.41 4.85
511 515 4.744795 ACGATAGAAGACAAGAATGGCT 57.255 40.909 0.00 0.00 44.57 4.75
512 516 4.034510 CCAACGATAGAAGACAAGAATGGC 59.965 45.833 0.00 0.00 41.38 4.40
513 517 5.419542 TCCAACGATAGAAGACAAGAATGG 58.580 41.667 0.00 0.00 41.38 3.16
514 518 6.102663 ACTCCAACGATAGAAGACAAGAATG 58.897 40.000 0.00 0.00 41.38 2.67
515 519 6.287589 ACTCCAACGATAGAAGACAAGAAT 57.712 37.500 0.00 0.00 41.38 2.40
539 543 1.607628 AGTCGTAGCGTGAGAGTTGTT 59.392 47.619 0.00 0.00 0.00 2.83
561 565 8.578151 AGTACGAGTAAATCTTCTGAAAACTCT 58.422 33.333 0.00 0.00 32.17 3.24
580 584 7.556733 ACTCTCACCTTCTATTTAGTACGAG 57.443 40.000 0.00 0.00 0.00 4.18
581 585 7.392673 ACAACTCTCACCTTCTATTTAGTACGA 59.607 37.037 0.00 0.00 0.00 3.43
582 586 7.536855 ACAACTCTCACCTTCTATTTAGTACG 58.463 38.462 0.00 0.00 0.00 3.67
583 587 8.521176 TGACAACTCTCACCTTCTATTTAGTAC 58.479 37.037 0.00 0.00 0.00 2.73
584 588 8.521176 GTGACAACTCTCACCTTCTATTTAGTA 58.479 37.037 0.00 0.00 35.44 1.82
585 589 7.233757 AGTGACAACTCTCACCTTCTATTTAGT 59.766 37.037 0.00 0.00 41.44 2.24
586 590 7.543868 CAGTGACAACTCTCACCTTCTATTTAG 59.456 40.741 0.00 0.00 41.44 1.85
588 592 6.226787 CAGTGACAACTCTCACCTTCTATTT 58.773 40.000 0.00 0.00 41.44 1.40
589 593 5.279708 CCAGTGACAACTCTCACCTTCTATT 60.280 44.000 0.00 0.00 41.44 1.73
610 1577 3.182967 GAGACAATTCTCACGCTACCAG 58.817 50.000 0.00 0.00 46.84 4.00
702 1669 0.251253 ACGTCGGAGGGAGTCTCTTT 60.251 55.000 0.00 0.00 42.10 2.52
703 1670 0.677414 GACGTCGGAGGGAGTCTCTT 60.677 60.000 0.00 0.00 42.10 2.85
711 1716 2.115911 CAGAGAGGACGTCGGAGGG 61.116 68.421 9.92 0.00 0.00 4.30
714 1719 0.036448 AAGTCAGAGAGGACGTCGGA 59.964 55.000 9.92 0.00 42.62 4.55
715 1720 0.448593 GAAGTCAGAGAGGACGTCGG 59.551 60.000 9.92 0.00 42.62 4.79
718 1723 1.540267 CTGGAAGTCAGAGAGGACGT 58.460 55.000 0.00 0.00 46.18 4.34
720 1725 1.931635 ACCTGGAAGTCAGAGAGGAC 58.068 55.000 0.00 0.00 46.18 3.85
722 1727 1.552792 GGAACCTGGAAGTCAGAGAGG 59.447 57.143 0.00 0.00 46.18 3.69
726 1731 0.687354 GCTGGAACCTGGAAGTCAGA 59.313 55.000 0.00 0.00 46.18 3.27
732 1737 1.774217 ACTGGGCTGGAACCTGGAA 60.774 57.895 0.00 0.00 0.00 3.53
733 1738 2.121963 ACTGGGCTGGAACCTGGA 60.122 61.111 0.00 0.00 0.00 3.86
734 1739 2.034687 CACTGGGCTGGAACCTGG 59.965 66.667 0.00 0.00 0.00 4.45
735 1740 1.601759 CACACTGGGCTGGAACCTG 60.602 63.158 0.00 0.00 0.00 4.00
736 1741 2.839098 CACACTGGGCTGGAACCT 59.161 61.111 0.00 0.00 0.00 3.50
737 1742 2.985847 GCACACTGGGCTGGAACC 60.986 66.667 0.00 0.00 0.00 3.62
738 1743 3.357079 CGCACACTGGGCTGGAAC 61.357 66.667 0.87 0.00 0.00 3.62
761 1766 0.177604 GTCGTAGAGGAGGACCGAGA 59.822 60.000 0.00 0.00 41.83 4.04
765 1770 1.385756 GGCAGTCGTAGAGGAGGACC 61.386 65.000 0.00 0.00 42.80 4.46
799 1804 4.096532 CGCACACTAGGATAAGTCAGAGAA 59.903 45.833 0.00 0.00 0.00 2.87
839 1849 1.434188 TGGTGTTGTGGGTGAGATCT 58.566 50.000 0.00 0.00 0.00 2.75
856 1866 3.546002 TTTTGACGGCGTTTAGAATGG 57.454 42.857 16.19 0.00 0.00 3.16
912 1922 6.522054 TGGTAAAATTTATCACCCGCAAAAA 58.478 32.000 11.84 0.00 0.00 1.94
913 1923 6.097915 TGGTAAAATTTATCACCCGCAAAA 57.902 33.333 11.84 0.00 0.00 2.44
914 1924 5.723672 TGGTAAAATTTATCACCCGCAAA 57.276 34.783 11.84 0.00 0.00 3.68
915 1925 5.723672 TTGGTAAAATTTATCACCCGCAA 57.276 34.783 0.00 1.17 0.00 4.85
916 1926 5.923733 ATTGGTAAAATTTATCACCCGCA 57.076 34.783 0.00 0.00 0.00 5.69
917 1927 6.334202 TCAATTGGTAAAATTTATCACCCGC 58.666 36.000 5.42 0.00 0.00 6.13
918 1928 7.543756 ACTCAATTGGTAAAATTTATCACCCG 58.456 34.615 5.42 0.00 0.00 5.28
931 1941 9.256228 ACTGAGATCTACTTACTCAATTGGTAA 57.744 33.333 5.42 11.47 39.60 2.85
932 1942 8.824756 ACTGAGATCTACTTACTCAATTGGTA 57.175 34.615 5.42 4.27 39.60 3.25
933 1943 7.726033 ACTGAGATCTACTTACTCAATTGGT 57.274 36.000 5.42 5.27 39.60 3.67
945 1955 6.763355 TCTTTTGAGCAAACTGAGATCTACT 58.237 36.000 0.00 0.00 0.00 2.57
951 1961 5.123186 TCGTTTTCTTTTGAGCAAACTGAGA 59.877 36.000 0.00 0.00 30.82 3.27
974 1984 2.358898 TGTTGCCAAAGTTTGCTCTCTC 59.641 45.455 10.25 0.00 0.00 3.20
979 1989 2.289945 TGGTTTGTTGCCAAAGTTTGCT 60.290 40.909 10.25 0.00 41.09 3.91
980 1990 2.079925 TGGTTTGTTGCCAAAGTTTGC 58.920 42.857 10.25 6.59 41.09 3.68
981 1991 3.487209 GCATGGTTTGTTGCCAAAGTTTG 60.487 43.478 8.73 8.73 41.09 2.93
983 1993 2.287769 GCATGGTTTGTTGCCAAAGTT 58.712 42.857 0.00 0.00 41.09 2.66
984 1994 1.952193 GCATGGTTTGTTGCCAAAGT 58.048 45.000 0.00 0.00 41.09 2.66
990 2000 0.387239 GAGTCGGCATGGTTTGTTGC 60.387 55.000 0.00 0.00 38.14 4.17
991 2001 1.238439 AGAGTCGGCATGGTTTGTTG 58.762 50.000 0.00 0.00 0.00 3.33
992 2002 1.880027 GAAGAGTCGGCATGGTTTGTT 59.120 47.619 0.00 0.00 0.00 2.83
993 2003 1.072331 AGAAGAGTCGGCATGGTTTGT 59.928 47.619 0.00 0.00 0.00 2.83
994 2004 1.813513 AGAAGAGTCGGCATGGTTTG 58.186 50.000 0.00 0.00 0.00 2.93
1005 2015 4.698575 ACAACAAGGTCAGAAGAAGAGTC 58.301 43.478 0.00 0.00 0.00 3.36
1013 2023 2.092429 AGGCTCAACAACAAGGTCAGAA 60.092 45.455 0.00 0.00 0.00 3.02
1019 2029 1.002468 CGTTCAGGCTCAACAACAAGG 60.002 52.381 1.31 0.00 0.00 3.61
1040 2050 4.124351 CCGACGAGGCCAACGCTA 62.124 66.667 19.42 0.00 34.44 4.26
1063 2088 3.087065 GGCAAAGCCCTGGTAGGA 58.913 61.111 0.00 0.00 44.06 2.94
1077 2102 2.357760 GTAAGGTTCGCCGTGGCA 60.358 61.111 12.06 0.00 43.66 4.92
1081 2106 0.323725 TCTAGGGTAAGGTTCGCCGT 60.324 55.000 0.00 0.00 43.66 5.68
1137 2163 2.104792 CTGGGAAGTGAAGTTGGTGAGA 59.895 50.000 0.00 0.00 0.00 3.27
1423 2458 3.706373 GCTCAGCTCGGGGTTCCA 61.706 66.667 0.00 0.00 0.00 3.53
1690 2733 1.762222 GCATACATCGTGTCCGCCAC 61.762 60.000 0.00 0.00 40.89 5.01
1904 2974 1.141881 AGGATGAACGCTACAGCCG 59.858 57.895 0.00 0.00 46.65 5.52
1911 2981 2.434884 CGCCACAGGATGAACGCT 60.435 61.111 0.00 0.00 39.69 5.07
2019 3095 4.755123 AGTACATTTCTGTTCTTGAACCCG 59.245 41.667 10.51 3.08 36.79 5.28
2148 3224 2.086869 CTCACCACTTCGGCAATGAAT 58.913 47.619 0.00 0.00 39.03 2.57
2238 3314 7.229306 CCATTTGCCATGTAGTCATACACTAAT 59.771 37.037 0.00 0.00 44.51 1.73
2241 3317 4.883585 CCATTTGCCATGTAGTCATACACT 59.116 41.667 0.00 0.00 44.51 3.55
2421 3497 1.001406 CCGTTCATCTCCCTATCCAGC 59.999 57.143 0.00 0.00 0.00 4.85
2461 3537 4.162698 ACCATGGTCGTATAACCTTGCTAA 59.837 41.667 13.00 0.00 41.07 3.09
2566 3642 4.021544 ACCAAATGCAAATACATCGGTTGT 60.022 37.500 0.00 0.00 42.62 3.32
2718 3797 0.323360 TGAATTTCCCCTCAAGCCGG 60.323 55.000 0.00 0.00 0.00 6.13
2724 3803 3.824001 TCCATGTTGAATTTCCCCTCA 57.176 42.857 0.00 0.00 0.00 3.86
2765 3844 0.110823 CGCGCACAACAAACCTAGTC 60.111 55.000 8.75 0.00 0.00 2.59
2835 3914 2.396157 GGCGATTTGGTCACCGTCC 61.396 63.158 0.00 0.00 0.00 4.79
2863 3942 4.116878 GCTCATGAAGGTCGGAGC 57.883 61.111 0.00 0.00 44.97 4.70
2873 3952 2.481969 GCCATCTCGTTGTAGCTCATGA 60.482 50.000 0.00 0.00 0.00 3.07
3020 4099 8.482429 GCAACATAAATAGCTCATGTAATTTGC 58.518 33.333 0.00 0.00 32.70 3.68
3026 4105 9.428097 CTCATAGCAACATAAATAGCTCATGTA 57.572 33.333 0.00 0.00 38.47 2.29
3027 4106 7.389884 CCTCATAGCAACATAAATAGCTCATGT 59.610 37.037 0.00 0.00 38.47 3.21
3028 4107 7.148289 CCCTCATAGCAACATAAATAGCTCATG 60.148 40.741 0.00 0.00 38.47 3.07
3029 4108 6.883217 CCCTCATAGCAACATAAATAGCTCAT 59.117 38.462 0.00 0.00 38.47 2.90
3030 4109 6.043127 TCCCTCATAGCAACATAAATAGCTCA 59.957 38.462 0.00 0.00 38.47 4.26
3031 4110 6.467677 TCCCTCATAGCAACATAAATAGCTC 58.532 40.000 0.00 0.00 38.47 4.09
3033 4112 7.693969 AATCCCTCATAGCAACATAAATAGC 57.306 36.000 0.00 0.00 0.00 2.97
3043 4122 9.866655 ACAAGATAATTAAATCCCTCATAGCAA 57.133 29.630 0.00 0.00 0.00 3.91
3045 4124 8.239998 GCACAAGATAATTAAATCCCTCATAGC 58.760 37.037 0.00 0.00 0.00 2.97
3046 4125 9.512588 AGCACAAGATAATTAAATCCCTCATAG 57.487 33.333 0.00 0.00 0.00 2.23
3047 4126 9.507329 GAGCACAAGATAATTAAATCCCTCATA 57.493 33.333 0.00 0.00 0.00 2.15
3048 4127 8.223330 AGAGCACAAGATAATTAAATCCCTCAT 58.777 33.333 0.00 0.00 0.00 2.90
3049 4128 7.577303 AGAGCACAAGATAATTAAATCCCTCA 58.423 34.615 0.00 0.00 0.00 3.86
3077 4165 0.678048 AAGGCGTGCAAAGAGGGATC 60.678 55.000 0.00 0.00 0.00 3.36
3081 4169 1.576421 GACAAGGCGTGCAAAGAGG 59.424 57.895 0.00 0.00 0.00 3.69
3089 4177 1.886861 CTTTCGGACGACAAGGCGTG 61.887 60.000 5.34 0.00 45.72 5.34
3091 4179 2.380410 CCTTTCGGACGACAAGGCG 61.380 63.158 16.62 0.00 31.26 5.52
3092 4180 1.289800 GACCTTTCGGACGACAAGGC 61.290 60.000 23.11 16.57 36.64 4.35
3093 4181 0.669625 GGACCTTTCGGACGACAAGG 60.670 60.000 22.29 22.29 37.86 3.61
3103 4197 2.809601 CGACTGCGGGACCTTTCG 60.810 66.667 0.00 0.00 0.00 3.46
3114 4208 0.036858 AAAAGAGCTCCTCCGACTGC 60.037 55.000 10.93 0.00 0.00 4.40
3150 4244 7.654520 GCGGTAACATTTCACTATGATAACCTA 59.345 37.037 0.00 0.00 0.00 3.08
3152 4246 6.293244 GGCGGTAACATTTCACTATGATAACC 60.293 42.308 0.00 0.00 0.00 2.85
3158 4252 2.616842 GGGGCGGTAACATTTCACTATG 59.383 50.000 0.00 0.00 0.00 2.23
3172 4266 2.306847 GAAATTGATACATGGGGCGGT 58.693 47.619 0.00 0.00 0.00 5.68
3173 4267 2.294233 CTGAAATTGATACATGGGGCGG 59.706 50.000 0.00 0.00 0.00 6.13
3174 4268 2.951642 ACTGAAATTGATACATGGGGCG 59.048 45.455 0.00 0.00 0.00 6.13
3175 4269 5.133221 ACTACTGAAATTGATACATGGGGC 58.867 41.667 0.00 0.00 0.00 5.80
3176 4270 8.786898 CAATACTACTGAAATTGATACATGGGG 58.213 37.037 0.00 0.00 33.38 4.96
3177 4271 8.786898 CCAATACTACTGAAATTGATACATGGG 58.213 37.037 0.00 0.00 33.38 4.00
3178 4272 9.342308 ACCAATACTACTGAAATTGATACATGG 57.658 33.333 0.00 0.00 33.38 3.66
3181 4275 9.952030 TCAACCAATACTACTGAAATTGATACA 57.048 29.630 0.00 0.00 33.38 2.29
3183 4277 9.093970 CGTCAACCAATACTACTGAAATTGATA 57.906 33.333 0.00 0.00 33.38 2.15
3184 4278 7.606456 ACGTCAACCAATACTACTGAAATTGAT 59.394 33.333 0.00 0.00 33.38 2.57
3185 4279 6.932400 ACGTCAACCAATACTACTGAAATTGA 59.068 34.615 0.00 0.00 33.38 2.57
3186 4280 7.129109 ACGTCAACCAATACTACTGAAATTG 57.871 36.000 0.00 0.00 0.00 2.32
3188 4282 9.745880 CTATACGTCAACCAATACTACTGAAAT 57.254 33.333 0.00 0.00 0.00 2.17
3189 4283 7.703621 GCTATACGTCAACCAATACTACTGAAA 59.296 37.037 0.00 0.00 0.00 2.69
3190 4284 7.067859 AGCTATACGTCAACCAATACTACTGAA 59.932 37.037 0.00 0.00 0.00 3.02
3191 4285 6.544931 AGCTATACGTCAACCAATACTACTGA 59.455 38.462 0.00 0.00 0.00 3.41
3192 4286 6.736123 AGCTATACGTCAACCAATACTACTG 58.264 40.000 0.00 0.00 0.00 2.74
3193 4287 6.956202 AGCTATACGTCAACCAATACTACT 57.044 37.500 0.00 0.00 0.00 2.57
3194 4288 7.303998 CCTAGCTATACGTCAACCAATACTAC 58.696 42.308 0.00 0.00 0.00 2.73
3195 4289 6.072286 GCCTAGCTATACGTCAACCAATACTA 60.072 42.308 0.00 0.00 0.00 1.82
3196 4290 5.278858 GCCTAGCTATACGTCAACCAATACT 60.279 44.000 0.00 0.00 0.00 2.12
3197 4291 4.922103 GCCTAGCTATACGTCAACCAATAC 59.078 45.833 0.00 0.00 0.00 1.89
3198 4292 4.021719 GGCCTAGCTATACGTCAACCAATA 60.022 45.833 0.00 0.00 0.00 1.90
3199 4293 3.244112 GGCCTAGCTATACGTCAACCAAT 60.244 47.826 0.00 0.00 0.00 3.16
3200 4294 2.101917 GGCCTAGCTATACGTCAACCAA 59.898 50.000 0.00 0.00 0.00 3.67
3201 4295 1.684983 GGCCTAGCTATACGTCAACCA 59.315 52.381 0.00 0.00 0.00 3.67
3202 4296 1.000618 GGGCCTAGCTATACGTCAACC 59.999 57.143 0.84 0.00 0.00 3.77
3203 4297 1.000618 GGGGCCTAGCTATACGTCAAC 59.999 57.143 0.84 0.00 0.00 3.18
3204 4298 1.335145 GGGGCCTAGCTATACGTCAA 58.665 55.000 0.84 0.00 0.00 3.18
3205 4299 0.186630 TGGGGCCTAGCTATACGTCA 59.813 55.000 0.84 0.00 0.00 4.35
3206 4300 1.204941 CATGGGGCCTAGCTATACGTC 59.795 57.143 0.84 0.00 0.00 4.34
3207 4301 1.267121 CATGGGGCCTAGCTATACGT 58.733 55.000 0.84 0.00 0.00 3.57
3208 4302 0.108138 GCATGGGGCCTAGCTATACG 60.108 60.000 0.84 0.00 36.11 3.06
3209 4303 0.984230 TGCATGGGGCCTAGCTATAC 59.016 55.000 0.84 0.00 43.89 1.47
3210 4304 0.984230 GTGCATGGGGCCTAGCTATA 59.016 55.000 0.84 0.00 43.89 1.31
3211 4305 1.061905 TGTGCATGGGGCCTAGCTAT 61.062 55.000 0.84 0.00 43.89 2.97
3212 4306 1.692395 TGTGCATGGGGCCTAGCTA 60.692 57.895 0.84 0.00 43.89 3.32
3213 4307 3.016971 TGTGCATGGGGCCTAGCT 61.017 61.111 0.84 0.00 43.89 3.32
3214 4308 2.830370 GTGTGCATGGGGCCTAGC 60.830 66.667 0.84 5.93 43.89 3.42
3215 4309 0.323725 AAAGTGTGCATGGGGCCTAG 60.324 55.000 0.84 0.00 43.89 3.02
3216 4310 0.114168 AAAAGTGTGCATGGGGCCTA 59.886 50.000 0.84 0.00 43.89 3.93
3217 4311 0.763986 AAAAAGTGTGCATGGGGCCT 60.764 50.000 0.84 0.00 43.89 5.19
3218 4312 0.972883 TAAAAAGTGTGCATGGGGCC 59.027 50.000 0.00 0.00 43.89 5.80
3219 4313 2.233431 TGATAAAAAGTGTGCATGGGGC 59.767 45.455 0.00 0.00 45.13 5.80
3220 4314 3.676873 GCTGATAAAAAGTGTGCATGGGG 60.677 47.826 0.00 0.00 0.00 4.96
3221 4315 3.056678 TGCTGATAAAAAGTGTGCATGGG 60.057 43.478 0.00 0.00 0.00 4.00
3222 4316 4.171005 CTGCTGATAAAAAGTGTGCATGG 58.829 43.478 0.00 0.00 0.00 3.66
3223 4317 4.171005 CCTGCTGATAAAAAGTGTGCATG 58.829 43.478 0.00 0.00 0.00 4.06
3224 4318 3.828451 ACCTGCTGATAAAAAGTGTGCAT 59.172 39.130 0.00 0.00 0.00 3.96
3225 4319 3.221771 ACCTGCTGATAAAAAGTGTGCA 58.778 40.909 0.00 0.00 0.00 4.57
3226 4320 3.253188 TGACCTGCTGATAAAAAGTGTGC 59.747 43.478 0.00 0.00 0.00 4.57
3227 4321 5.009010 ACTTGACCTGCTGATAAAAAGTGTG 59.991 40.000 0.00 0.00 0.00 3.82
3228 4322 5.133221 ACTTGACCTGCTGATAAAAAGTGT 58.867 37.500 0.00 0.00 0.00 3.55
3229 4323 5.695851 ACTTGACCTGCTGATAAAAAGTG 57.304 39.130 0.00 0.00 0.00 3.16
3230 4324 6.096846 ACAAACTTGACCTGCTGATAAAAAGT 59.903 34.615 0.00 0.00 0.00 2.66
3231 4325 6.507023 ACAAACTTGACCTGCTGATAAAAAG 58.493 36.000 0.00 0.00 0.00 2.27
3232 4326 6.463995 ACAAACTTGACCTGCTGATAAAAA 57.536 33.333 0.00 0.00 0.00 1.94
3233 4327 6.321181 AGAACAAACTTGACCTGCTGATAAAA 59.679 34.615 0.00 0.00 0.00 1.52
3234 4328 5.827797 AGAACAAACTTGACCTGCTGATAAA 59.172 36.000 0.00 0.00 0.00 1.40
3235 4329 5.376625 AGAACAAACTTGACCTGCTGATAA 58.623 37.500 0.00 0.00 0.00 1.75
3236 4330 4.973168 AGAACAAACTTGACCTGCTGATA 58.027 39.130 0.00 0.00 0.00 2.15
3237 4331 3.825328 AGAACAAACTTGACCTGCTGAT 58.175 40.909 0.00 0.00 0.00 2.90
3238 4332 3.281727 AGAACAAACTTGACCTGCTGA 57.718 42.857 0.00 0.00 0.00 4.26
3239 4333 4.380531 TCTAGAACAAACTTGACCTGCTG 58.619 43.478 0.00 0.00 0.00 4.41
3240 4334 4.689612 TCTAGAACAAACTTGACCTGCT 57.310 40.909 0.00 0.00 0.00 4.24
3241 4335 5.278022 CCTTTCTAGAACAAACTTGACCTGC 60.278 44.000 4.18 0.00 0.00 4.85
3242 4336 5.823045 ACCTTTCTAGAACAAACTTGACCTG 59.177 40.000 4.18 0.00 0.00 4.00
3243 4337 6.002653 ACCTTTCTAGAACAAACTTGACCT 57.997 37.500 4.18 0.00 0.00 3.85
3244 4338 6.056236 AGACCTTTCTAGAACAAACTTGACC 58.944 40.000 4.18 0.00 0.00 4.02
3245 4339 6.074249 CGAGACCTTTCTAGAACAAACTTGAC 60.074 42.308 4.18 0.00 29.47 3.18
3246 4340 5.983720 CGAGACCTTTCTAGAACAAACTTGA 59.016 40.000 4.18 0.00 29.47 3.02
3247 4341 5.177696 CCGAGACCTTTCTAGAACAAACTTG 59.822 44.000 4.18 6.88 29.47 3.16
3248 4342 5.070047 TCCGAGACCTTTCTAGAACAAACTT 59.930 40.000 4.18 0.00 29.47 2.66
3249 4343 4.587684 TCCGAGACCTTTCTAGAACAAACT 59.412 41.667 4.18 3.11 29.47 2.66
3250 4344 4.879598 TCCGAGACCTTTCTAGAACAAAC 58.120 43.478 4.18 0.00 29.47 2.93
3251 4345 5.540400 TTCCGAGACCTTTCTAGAACAAA 57.460 39.130 4.18 0.00 29.47 2.83
3252 4346 5.540400 TTTCCGAGACCTTTCTAGAACAA 57.460 39.130 4.18 0.00 29.47 2.83
3253 4347 5.740290 ATTTCCGAGACCTTTCTAGAACA 57.260 39.130 4.18 0.00 29.47 3.18
3254 4348 7.436430 AAAATTTCCGAGACCTTTCTAGAAC 57.564 36.000 4.18 0.00 29.47 3.01
3255 4349 9.563748 TTAAAAATTTCCGAGACCTTTCTAGAA 57.436 29.630 0.00 0.00 29.47 2.10
3256 4350 9.734984 ATTAAAAATTTCCGAGACCTTTCTAGA 57.265 29.630 0.00 0.00 29.47 2.43
3262 4356 9.268268 GGAAAAATTAAAAATTTCCGAGACCTT 57.732 29.630 11.80 0.00 41.75 3.50
3263 4357 8.827177 GGAAAAATTAAAAATTTCCGAGACCT 57.173 30.769 11.80 0.00 41.75 3.85
3303 4397 9.408648 TCCAAATCAAACTCTTCTACTCTTTTT 57.591 29.630 0.00 0.00 0.00 1.94
3304 4398 8.980481 TCCAAATCAAACTCTTCTACTCTTTT 57.020 30.769 0.00 0.00 0.00 2.27
3305 4399 8.214364 ACTCCAAATCAAACTCTTCTACTCTTT 58.786 33.333 0.00 0.00 0.00 2.52
3306 4400 7.740805 ACTCCAAATCAAACTCTTCTACTCTT 58.259 34.615 0.00 0.00 0.00 2.85
3307 4401 7.234577 AGACTCCAAATCAAACTCTTCTACTCT 59.765 37.037 0.00 0.00 0.00 3.24
3308 4402 7.330700 CAGACTCCAAATCAAACTCTTCTACTC 59.669 40.741 0.00 0.00 0.00 2.59
3309 4403 7.015682 TCAGACTCCAAATCAAACTCTTCTACT 59.984 37.037 0.00 0.00 0.00 2.57
3338 4432 2.503765 TGCAAGATTCGGAAGGGATACA 59.496 45.455 0.00 0.00 39.74 2.29
3340 4434 2.485479 GCTGCAAGATTCGGAAGGGATA 60.485 50.000 0.00 0.00 34.07 2.59
3349 4443 1.078214 TCCCCAGCTGCAAGATTCG 60.078 57.895 8.66 0.00 34.07 3.34
3358 4452 7.397476 TCTTATACTAACATATCTCCCCAGCTG 59.603 40.741 6.78 6.78 0.00 4.24
3362 4456 7.678598 CCCTTCTTATACTAACATATCTCCCCA 59.321 40.741 0.00 0.00 0.00 4.96
3374 4468 5.152306 TCTGGGAGCCCTTCTTATACTAA 57.848 43.478 7.16 0.00 36.94 2.24
3376 4470 3.708236 TCTGGGAGCCCTTCTTATACT 57.292 47.619 7.16 0.00 36.94 2.12
3377 4471 6.628644 ATTATCTGGGAGCCCTTCTTATAC 57.371 41.667 7.16 0.00 36.94 1.47
3379 4473 6.295916 CGTTATTATCTGGGAGCCCTTCTTAT 60.296 42.308 7.16 0.00 36.94 1.73
3380 4474 5.011738 CGTTATTATCTGGGAGCCCTTCTTA 59.988 44.000 7.16 0.00 36.94 2.10
3381 4475 4.202367 CGTTATTATCTGGGAGCCCTTCTT 60.202 45.833 7.16 0.00 36.94 2.52
3383 4477 3.323979 TCGTTATTATCTGGGAGCCCTTC 59.676 47.826 7.16 0.00 36.94 3.46
3463 4571 3.700961 CGGTTAACGCAGGATCGG 58.299 61.111 0.00 0.00 34.82 4.18
3485 4593 4.038763 TCGTAATAATCGTCCAGCTCCATT 59.961 41.667 0.00 0.00 0.00 3.16
3618 4726 5.277297 GCTGGTTAATTTGCAAGTTTCAACC 60.277 40.000 22.89 22.89 35.76 3.77
3768 4876 1.333791 CCAAACCTTTGTTCTCGACGC 60.334 52.381 0.00 0.00 36.45 5.19
3872 5157 1.746991 TTTGCACCACAGCACGACA 60.747 52.632 0.00 0.00 45.61 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.