Multiple sequence alignment - TraesCS2B01G220800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G220800 chr2B 100.000 2472 0 0 1 2472 211010923 211008452 0.000000e+00 4566.0
1 TraesCS2B01G220800 chr2B 91.775 231 19 0 2143 2373 445167977 445168207 3.070000e-84 322.0
2 TraesCS2B01G220800 chr2B 89.720 107 3 1 2374 2472 144663972 144664078 2.000000e-26 130.0
3 TraesCS2B01G220800 chr2D 91.578 1603 92 28 542 2130 153048393 153046820 0.000000e+00 2172.0
4 TraesCS2B01G220800 chr2D 95.707 396 16 1 1 396 153048871 153048477 9.640000e-179 636.0
5 TraesCS2B01G220800 chr2D 93.750 96 6 0 425 520 153048479 153048384 7.130000e-31 145.0
6 TraesCS2B01G220800 chr2A 90.731 1478 89 20 672 2133 148023659 148025104 0.000000e+00 1927.0
7 TraesCS2B01G220800 chr2A 91.775 231 18 1 2143 2373 357150555 357150784 1.100000e-83 320.0
8 TraesCS2B01G220800 chr2A 86.147 231 13 7 176 395 148023054 148023276 5.320000e-57 231.0
9 TraesCS2B01G220800 chr2A 89.773 88 5 2 105 192 148022955 148023038 2.600000e-20 110.0
10 TraesCS2B01G220800 chr2A 84.043 94 10 3 542 635 148023488 148023576 4.380000e-13 86.1
11 TraesCS2B01G220800 chr4D 93.478 230 15 0 2144 2373 224749953 224749724 2.350000e-90 342.0
12 TraesCS2B01G220800 chr1D 92.609 230 17 0 2144 2373 83936416 83936187 5.100000e-87 331.0
13 TraesCS2B01G220800 chr1A 92.241 232 18 0 2143 2374 267818476 267818245 1.830000e-86 329.0
14 TraesCS2B01G220800 chr6D 91.525 236 19 1 2144 2379 221996799 221996565 8.530000e-85 324.0
15 TraesCS2B01G220800 chr7D 90.795 239 21 1 2143 2380 288787280 288787042 3.970000e-83 318.0
16 TraesCS2B01G220800 chr6A 90.164 244 24 0 2130 2373 506039733 506039976 3.970000e-83 318.0
17 TraesCS2B01G220800 chr5D 89.641 251 21 5 2126 2373 320979715 320979963 5.130000e-82 315.0
18 TraesCS2B01G220800 chr5D 89.423 104 3 1 2377 2472 125515223 125515120 9.280000e-25 124.0
19 TraesCS2B01G220800 chr5D 86.916 107 6 1 2374 2472 341179926 341180032 2.010000e-21 113.0
20 TraesCS2B01G220800 chr7B 80.608 263 44 7 1771 2032 561891098 561890842 1.940000e-46 196.0
21 TraesCS2B01G220800 chr4A 80.184 217 41 2 1771 1986 75926837 75926622 7.070000e-36 161.0
22 TraesCS2B01G220800 chr5B 78.814 236 38 11 1808 2037 600724971 600725200 5.510000e-32 148.0
23 TraesCS2B01G220800 chr5B 88.785 107 4 1 2374 2472 60036007 60036113 9.280000e-25 124.0
24 TraesCS2B01G220800 chr5B 88.785 107 4 4 2374 2472 705217883 705217989 9.280000e-25 124.0
25 TraesCS2B01G220800 chr5B 88.679 106 4 1 2374 2471 399018488 399018593 3.340000e-24 122.0
26 TraesCS2B01G220800 chr5B 87.850 107 5 1 2374 2472 73376683 73376789 4.320000e-23 119.0
27 TraesCS2B01G220800 chr6B 90.385 104 2 1 2377 2472 29880863 29880760 2.000000e-26 130.0
28 TraesCS2B01G220800 chr6B 89.720 107 3 1 2374 2472 545601515 545601621 2.000000e-26 130.0
29 TraesCS2B01G220800 chrUn 88.889 108 4 1 2373 2472 116702667 116702774 2.580000e-25 126.0
30 TraesCS2B01G220800 chrUn 88.889 108 4 1 2373 2472 180288740 180288847 2.580000e-25 126.0
31 TraesCS2B01G220800 chrUn 88.785 107 4 1 2374 2472 122527089 122527195 9.280000e-25 124.0
32 TraesCS2B01G220800 chr1B 88.785 107 4 1 2374 2472 66227417 66227523 9.280000e-25 124.0
33 TraesCS2B01G220800 chr5A 88.462 104 4 3 2377 2472 625321014 625320911 4.320000e-23 119.0
34 TraesCS2B01G220800 chr5A 87.500 104 5 1 2377 2472 199249719 199249616 2.010000e-21 113.0
35 TraesCS2B01G220800 chr3B 88.462 104 4 3 2377 2472 533470986 533471089 4.320000e-23 119.0
36 TraesCS2B01G220800 chr3A 88.350 103 4 1 2378 2472 473522781 473522679 1.550000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G220800 chr2B 211008452 211010923 2471 True 4566.000000 4566 100.000000 1 2472 1 chr2B.!!$R1 2471
1 TraesCS2B01G220800 chr2D 153046820 153048871 2051 True 984.333333 2172 93.678333 1 2130 3 chr2D.!!$R1 2129
2 TraesCS2B01G220800 chr2A 148022955 148025104 2149 False 588.525000 1927 87.673500 105 2133 4 chr2A.!!$F2 2028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 1.210722 GAGGGGTGGAATCTGGAGTTC 59.789 57.143 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1991 0.179081 GTAATCGTGGGACTGCCTCC 60.179 60.0 0.0 0.0 38.55 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.755179 CATTGCGAAATGGAGGGAGT 58.245 50.000 8.38 0.00 0.00 3.85
39 40 3.338824 TGGAGGGAGTACCGGGATATATT 59.661 47.826 6.32 0.00 46.96 1.28
102 103 5.010012 CGGAATCTGGAATTATTTTGAGGGG 59.990 44.000 0.00 0.00 0.00 4.79
117 118 1.210722 GAGGGGTGGAATCTGGAGTTC 59.789 57.143 0.00 0.00 0.00 3.01
160 161 1.805945 GCGCGACAAGTGTCCTAGG 60.806 63.158 12.10 0.82 41.86 3.02
224 257 2.363925 GGCCCTACTGTCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
377 421 1.893801 ACGTACTCTGCAGGCTTTACT 59.106 47.619 15.13 0.00 0.00 2.24
385 429 2.484264 CTGCAGGCTTTACTTGTACACC 59.516 50.000 5.57 0.00 0.00 4.16
388 432 3.596214 CAGGCTTTACTTGTACACCGAT 58.404 45.455 0.00 0.00 0.00 4.18
396 440 7.591006 TTTACTTGTACACCGATGAAGATTC 57.409 36.000 0.00 0.00 0.00 2.52
397 441 5.407407 ACTTGTACACCGATGAAGATTCT 57.593 39.130 0.00 0.00 0.00 2.40
398 442 5.794894 ACTTGTACACCGATGAAGATTCTT 58.205 37.500 0.00 0.00 0.00 2.52
399 443 6.231211 ACTTGTACACCGATGAAGATTCTTT 58.769 36.000 0.00 0.00 0.00 2.52
400 444 6.710744 ACTTGTACACCGATGAAGATTCTTTT 59.289 34.615 0.00 0.00 0.00 2.27
401 445 7.228706 ACTTGTACACCGATGAAGATTCTTTTT 59.771 33.333 0.00 0.00 0.00 1.94
427 471 3.095922 GGGGGACACCGATGAATTC 57.904 57.895 0.00 0.00 41.60 2.17
441 485 8.116753 CACCGATGAATTCAATACAGTAAACTC 58.883 37.037 13.09 0.00 0.00 3.01
508 679 6.946165 ACACGTACGACAAATTATGTTTTCA 58.054 32.000 24.41 0.00 44.12 2.69
509 680 7.408123 ACACGTACGACAAATTATGTTTTCAA 58.592 30.769 24.41 0.00 44.12 2.69
510 681 7.373966 ACACGTACGACAAATTATGTTTTCAAC 59.626 33.333 24.41 0.00 44.12 3.18
511 682 6.570789 ACGTACGACAAATTATGTTTTCAACG 59.429 34.615 24.41 0.00 44.12 4.10
512 683 6.570789 CGTACGACAAATTATGTTTTCAACGT 59.429 34.615 10.44 0.00 44.12 3.99
513 684 7.735156 CGTACGACAAATTATGTTTTCAACGTA 59.265 33.333 10.44 0.00 44.12 3.57
514 685 7.825627 ACGACAAATTATGTTTTCAACGTAC 57.174 32.000 0.00 0.00 44.12 3.67
515 686 6.852345 ACGACAAATTATGTTTTCAACGTACC 59.148 34.615 0.00 0.00 44.12 3.34
516 687 7.073265 CGACAAATTATGTTTTCAACGTACCT 58.927 34.615 0.00 0.00 44.12 3.08
517 688 7.059033 CGACAAATTATGTTTTCAACGTACCTG 59.941 37.037 0.00 0.00 44.12 4.00
518 689 7.708998 ACAAATTATGTTTTCAACGTACCTGT 58.291 30.769 0.00 0.00 40.06 4.00
519 690 8.192110 ACAAATTATGTTTTCAACGTACCTGTT 58.808 29.630 0.00 0.00 40.06 3.16
520 691 9.666626 CAAATTATGTTTTCAACGTACCTGTTA 57.333 29.630 0.00 0.00 32.86 2.41
522 693 9.834628 AATTATGTTTTCAACGTACCTGTTATG 57.165 29.630 0.00 0.00 32.86 1.90
523 694 5.676532 TGTTTTCAACGTACCTGTTATGG 57.323 39.130 0.00 0.00 0.00 2.74
524 695 5.124645 TGTTTTCAACGTACCTGTTATGGT 58.875 37.500 0.00 0.00 43.66 3.55
525 696 5.007823 TGTTTTCAACGTACCTGTTATGGTG 59.992 40.000 0.00 0.00 41.05 4.17
526 697 2.690786 TCAACGTACCTGTTATGGTGC 58.309 47.619 0.00 0.00 41.05 5.01
527 698 2.037381 TCAACGTACCTGTTATGGTGCA 59.963 45.455 0.00 0.00 41.79 4.57
528 699 3.006940 CAACGTACCTGTTATGGTGCAT 58.993 45.455 0.00 0.00 41.79 3.96
529 700 3.343941 ACGTACCTGTTATGGTGCATT 57.656 42.857 0.00 0.00 41.79 3.56
530 701 3.267483 ACGTACCTGTTATGGTGCATTC 58.733 45.455 0.00 0.00 41.79 2.67
531 702 3.266636 CGTACCTGTTATGGTGCATTCA 58.733 45.455 0.00 0.00 41.79 2.57
532 703 3.687212 CGTACCTGTTATGGTGCATTCAA 59.313 43.478 0.00 0.00 41.79 2.69
533 704 4.155099 CGTACCTGTTATGGTGCATTCAAA 59.845 41.667 0.00 0.00 41.79 2.69
534 705 5.335269 CGTACCTGTTATGGTGCATTCAAAA 60.335 40.000 0.00 0.00 41.79 2.44
535 706 5.543507 ACCTGTTATGGTGCATTCAAAAA 57.456 34.783 0.00 0.00 39.17 1.94
536 707 5.296748 ACCTGTTATGGTGCATTCAAAAAC 58.703 37.500 0.00 2.62 39.17 2.43
537 708 5.163364 ACCTGTTATGGTGCATTCAAAAACA 60.163 36.000 16.05 16.05 39.17 2.83
538 709 5.757320 CCTGTTATGGTGCATTCAAAAACAA 59.243 36.000 16.88 8.20 0.00 2.83
540 711 7.201679 CCTGTTATGGTGCATTCAAAAACAAAA 60.202 33.333 16.88 4.49 0.00 2.44
552 723 5.770417 TCAAAAACAAAACGTACCAGTTGT 58.230 33.333 0.00 0.00 35.77 3.32
553 724 6.214399 TCAAAAACAAAACGTACCAGTTGTT 58.786 32.000 8.77 8.77 44.01 2.83
566 737 7.277098 ACGTACCAGTTGTTGTATATTAAGCAG 59.723 37.037 0.00 0.00 0.00 4.24
567 738 6.436843 ACCAGTTGTTGTATATTAAGCAGC 57.563 37.500 0.00 0.00 0.00 5.25
568 739 5.943416 ACCAGTTGTTGTATATTAAGCAGCA 59.057 36.000 0.00 0.00 0.00 4.41
637 827 6.354794 ACTAGCTTGACAATACACACCTAA 57.645 37.500 1.04 0.00 0.00 2.69
641 831 6.003950 AGCTTGACAATACACACCTAAACAT 58.996 36.000 0.00 0.00 0.00 2.71
642 832 6.149474 AGCTTGACAATACACACCTAAACATC 59.851 38.462 0.00 0.00 0.00 3.06
646 836 6.426633 TGACAATACACACCTAAACATCACTG 59.573 38.462 0.00 0.00 0.00 3.66
647 837 5.705441 ACAATACACACCTAAACATCACTGG 59.295 40.000 0.00 0.00 0.00 4.00
648 838 5.755409 ATACACACCTAAACATCACTGGA 57.245 39.130 0.00 0.00 0.00 3.86
649 839 4.431416 ACACACCTAAACATCACTGGAA 57.569 40.909 0.00 0.00 0.00 3.53
650 840 4.787551 ACACACCTAAACATCACTGGAAA 58.212 39.130 0.00 0.00 0.00 3.13
651 841 5.197451 ACACACCTAAACATCACTGGAAAA 58.803 37.500 0.00 0.00 0.00 2.29
652 842 5.654650 ACACACCTAAACATCACTGGAAAAA 59.345 36.000 0.00 0.00 0.00 1.94
656 846 7.710475 ACACCTAAACATCACTGGAAAAATTTG 59.290 33.333 0.00 0.00 0.00 2.32
657 847 7.171337 CACCTAAACATCACTGGAAAAATTTGG 59.829 37.037 0.00 0.00 0.00 3.28
658 848 7.147567 ACCTAAACATCACTGGAAAAATTTGGT 60.148 33.333 0.00 0.00 0.00 3.67
663 853 8.432110 ACATCACTGGAAAAATTTGGTAAAAC 57.568 30.769 0.00 0.00 0.00 2.43
664 854 8.043710 ACATCACTGGAAAAATTTGGTAAAACA 58.956 29.630 0.00 0.00 0.00 2.83
665 855 8.550376 CATCACTGGAAAAATTTGGTAAAACAG 58.450 33.333 0.00 0.00 0.00 3.16
666 856 7.616313 TCACTGGAAAAATTTGGTAAAACAGT 58.384 30.769 0.00 0.00 36.03 3.55
778 1014 3.069872 ACTTGCTTGATGAAACATTGCCA 59.930 39.130 0.00 0.00 0.00 4.92
981 1218 2.437180 CTGCAGCCTGAATCGCCA 60.437 61.111 0.00 0.00 0.00 5.69
1119 1356 1.981256 TCGATCGATCATGGTGAGGA 58.019 50.000 24.40 8.54 0.00 3.71
1122 1359 3.691609 TCGATCGATCATGGTGAGGATAG 59.308 47.826 24.40 4.21 0.00 2.08
1178 1415 1.898154 CAAGGTCACCTCCCCTACG 59.102 63.158 0.00 0.00 30.89 3.51
1316 1553 1.606531 GGAGCTCCTCAACATGGCT 59.393 57.895 26.25 0.00 35.86 4.75
1340 1577 0.261696 AGGAGTTTGGCAAACCTGGT 59.738 50.000 33.07 18.88 42.34 4.00
1498 1735 2.276201 TCCGCCGTTGATCATTGTTAG 58.724 47.619 0.00 0.00 0.00 2.34
1539 1778 6.680148 TCGATGATCAATGGTCCCTTAATA 57.320 37.500 0.00 0.00 0.00 0.98
1604 1845 5.425630 CCTCCTGGTAATGGTTTGTAGTAC 58.574 45.833 0.00 0.00 0.00 2.73
1739 1991 5.605564 TGTGTCGTTGAAAATATGTCCTG 57.394 39.130 0.00 0.00 0.00 3.86
1746 1998 3.889815 TGAAAATATGTCCTGGAGGCAG 58.110 45.455 0.00 0.00 34.44 4.85
1751 2003 2.607750 GTCCTGGAGGCAGTCCCA 60.608 66.667 0.00 0.00 46.31 4.37
1923 2176 7.519002 GTGGACACACATCTTTTGAATAGTAC 58.481 38.462 0.00 0.00 46.90 2.73
1978 2231 6.770785 GTCATTGGCATAGAAATACTAACCCA 59.229 38.462 0.00 0.00 35.23 4.51
1979 2232 6.998074 TCATTGGCATAGAAATACTAACCCAG 59.002 38.462 0.00 0.00 36.97 4.45
2001 2254 8.524487 CCCAGTAGTATATATGGACTTGAAGAC 58.476 40.741 0.00 0.00 33.50 3.01
2042 2295 1.325355 ACCCGACTTGAGACTTCGAA 58.675 50.000 0.00 0.00 34.62 3.71
2043 2296 1.893801 ACCCGACTTGAGACTTCGAAT 59.106 47.619 0.00 0.00 34.62 3.34
2044 2297 2.263077 CCCGACTTGAGACTTCGAATG 58.737 52.381 0.00 0.00 34.62 2.67
2045 2298 2.352814 CCCGACTTGAGACTTCGAATGT 60.353 50.000 0.00 0.00 34.62 2.71
2046 2299 3.119602 CCCGACTTGAGACTTCGAATGTA 60.120 47.826 0.00 0.00 34.62 2.29
2047 2300 3.852536 CCGACTTGAGACTTCGAATGTAC 59.147 47.826 0.00 0.00 34.62 2.90
2055 2308 6.920817 TGAGACTTCGAATGTACATGTACTT 58.079 36.000 30.69 23.78 37.00 2.24
2082 2335 8.812972 AGGATGTGAATCAACTTACTTAGTGTA 58.187 33.333 0.00 0.00 37.12 2.90
2104 2357 8.876790 GTGTATATCAAACACTACTTGGTAACC 58.123 37.037 0.80 0.00 43.13 2.85
2105 2358 8.818860 TGTATATCAAACACTACTTGGTAACCT 58.181 33.333 0.00 0.00 0.00 3.50
2140 2393 8.515473 AAATGTAGTTTTTCGTTATTTGCTCC 57.485 30.769 0.00 0.00 0.00 4.70
2141 2394 6.621316 TGTAGTTTTTCGTTATTTGCTCCA 57.379 33.333 0.00 0.00 0.00 3.86
2142 2395 7.028926 TGTAGTTTTTCGTTATTTGCTCCAA 57.971 32.000 0.00 0.00 0.00 3.53
2143 2396 7.653647 TGTAGTTTTTCGTTATTTGCTCCAAT 58.346 30.769 0.00 0.00 0.00 3.16
2144 2397 8.784994 TGTAGTTTTTCGTTATTTGCTCCAATA 58.215 29.630 0.00 0.00 0.00 1.90
2145 2398 9.783256 GTAGTTTTTCGTTATTTGCTCCAATAT 57.217 29.630 0.00 0.00 0.00 1.28
2147 2400 9.353999 AGTTTTTCGTTATTTGCTCCAATATTC 57.646 29.630 0.00 0.00 0.00 1.75
2148 2401 8.592155 GTTTTTCGTTATTTGCTCCAATATTCC 58.408 33.333 0.00 0.00 0.00 3.01
2149 2402 7.397892 TTTCGTTATTTGCTCCAATATTCCA 57.602 32.000 0.00 0.00 0.00 3.53
2150 2403 7.397892 TTCGTTATTTGCTCCAATATTCCAA 57.602 32.000 0.00 0.00 0.00 3.53
2151 2404 7.397892 TCGTTATTTGCTCCAATATTCCAAA 57.602 32.000 0.00 0.00 0.00 3.28
2152 2405 7.831753 TCGTTATTTGCTCCAATATTCCAAAA 58.168 30.769 0.00 0.00 0.00 2.44
2153 2406 8.474025 TCGTTATTTGCTCCAATATTCCAAAAT 58.526 29.630 0.00 0.00 0.00 1.82
2154 2407 9.743057 CGTTATTTGCTCCAATATTCCAAAATA 57.257 29.630 0.00 0.00 0.00 1.40
2161 2414 8.641541 TGCTCCAATATTCCAAAATAATTCTCC 58.358 33.333 0.00 0.00 31.28 3.71
2162 2415 7.809806 GCTCCAATATTCCAAAATAATTCTCCG 59.190 37.037 0.00 0.00 31.28 4.63
2163 2416 8.760980 TCCAATATTCCAAAATAATTCTCCGT 57.239 30.769 0.00 0.00 31.28 4.69
2164 2417 9.854668 TCCAATATTCCAAAATAATTCTCCGTA 57.145 29.630 0.00 0.00 31.28 4.02
2176 2429 9.788960 AAATAATTCTCCGTAAATTTTCAGCTC 57.211 29.630 0.00 0.00 0.00 4.09
2177 2430 6.817765 AATTCTCCGTAAATTTTCAGCTCA 57.182 33.333 0.00 0.00 0.00 4.26
2178 2431 7.396540 AATTCTCCGTAAATTTTCAGCTCAT 57.603 32.000 0.00 0.00 0.00 2.90
2179 2432 6.817765 TTCTCCGTAAATTTTCAGCTCATT 57.182 33.333 0.00 0.00 0.00 2.57
2180 2433 6.817765 TCTCCGTAAATTTTCAGCTCATTT 57.182 33.333 0.00 0.00 0.00 2.32
2181 2434 6.611381 TCTCCGTAAATTTTCAGCTCATTTG 58.389 36.000 0.00 0.00 0.00 2.32
2182 2435 5.708948 TCCGTAAATTTTCAGCTCATTTGG 58.291 37.500 0.00 0.00 0.00 3.28
2183 2436 5.475220 TCCGTAAATTTTCAGCTCATTTGGA 59.525 36.000 0.00 0.00 0.00 3.53
2184 2437 6.015856 TCCGTAAATTTTCAGCTCATTTGGAA 60.016 34.615 0.00 0.00 0.00 3.53
2185 2438 6.644592 CCGTAAATTTTCAGCTCATTTGGAAA 59.355 34.615 0.00 0.00 0.00 3.13
2186 2439 7.331687 CCGTAAATTTTCAGCTCATTTGGAAAT 59.668 33.333 0.00 0.00 35.71 2.17
2187 2440 8.164153 CGTAAATTTTCAGCTCATTTGGAAATG 58.836 33.333 5.85 5.85 45.49 2.32
2188 2441 8.992073 GTAAATTTTCAGCTCATTTGGAAATGT 58.008 29.630 11.02 0.00 44.66 2.71
2189 2442 8.454570 AAATTTTCAGCTCATTTGGAAATGTT 57.545 26.923 11.02 0.00 44.66 2.71
2190 2443 7.662604 ATTTTCAGCTCATTTGGAAATGTTC 57.337 32.000 11.02 5.51 44.66 3.18
2191 2444 5.787953 TTCAGCTCATTTGGAAATGTTCA 57.212 34.783 11.02 0.00 44.66 3.18
2192 2445 5.381174 TCAGCTCATTTGGAAATGTTCAG 57.619 39.130 11.02 4.16 44.66 3.02
2193 2446 5.072055 TCAGCTCATTTGGAAATGTTCAGA 58.928 37.500 11.02 5.25 44.66 3.27
2194 2447 5.535783 TCAGCTCATTTGGAAATGTTCAGAA 59.464 36.000 11.02 0.00 44.66 3.02
2195 2448 6.209986 TCAGCTCATTTGGAAATGTTCAGAAT 59.790 34.615 11.02 0.00 44.66 2.40
2196 2449 7.394077 TCAGCTCATTTGGAAATGTTCAGAATA 59.606 33.333 11.02 0.00 44.66 1.75
2197 2450 7.701078 CAGCTCATTTGGAAATGTTCAGAATAG 59.299 37.037 11.02 1.82 44.66 1.73
2198 2451 6.976925 GCTCATTTGGAAATGTTCAGAATAGG 59.023 38.462 11.02 0.00 44.66 2.57
2199 2452 7.363268 GCTCATTTGGAAATGTTCAGAATAGGT 60.363 37.037 11.02 0.00 44.66 3.08
2200 2453 9.177608 CTCATTTGGAAATGTTCAGAATAGGTA 57.822 33.333 11.02 0.00 44.66 3.08
2201 2454 9.527157 TCATTTGGAAATGTTCAGAATAGGTAA 57.473 29.630 11.02 0.00 44.66 2.85
2202 2455 9.573133 CATTTGGAAATGTTCAGAATAGGTAAC 57.427 33.333 4.24 0.00 40.61 2.50
2219 2472 4.807443 GGTAACTCTGACGTAGCTTTTCT 58.193 43.478 0.00 0.00 0.00 2.52
2220 2473 4.621886 GGTAACTCTGACGTAGCTTTTCTG 59.378 45.833 0.00 0.00 0.00 3.02
2221 2474 3.305398 ACTCTGACGTAGCTTTTCTGG 57.695 47.619 0.00 0.00 0.00 3.86
2222 2475 2.028930 ACTCTGACGTAGCTTTTCTGGG 60.029 50.000 0.00 0.00 0.00 4.45
2223 2476 1.968493 TCTGACGTAGCTTTTCTGGGT 59.032 47.619 0.00 0.00 0.00 4.51
2224 2477 2.367567 TCTGACGTAGCTTTTCTGGGTT 59.632 45.455 0.00 0.00 0.00 4.11
2225 2478 2.737252 CTGACGTAGCTTTTCTGGGTTC 59.263 50.000 0.00 0.00 0.00 3.62
2226 2479 2.103432 TGACGTAGCTTTTCTGGGTTCA 59.897 45.455 0.00 0.00 0.00 3.18
2227 2480 2.737252 GACGTAGCTTTTCTGGGTTCAG 59.263 50.000 0.00 0.00 42.21 3.02
2236 2489 2.496899 TCTGGGTTCAGAATTCCAGC 57.503 50.000 21.73 0.00 46.08 4.85
2237 2490 1.988107 TCTGGGTTCAGAATTCCAGCT 59.012 47.619 21.73 0.00 46.08 4.24
2238 2491 2.089980 CTGGGTTCAGAATTCCAGCTG 58.910 52.381 17.43 6.78 43.49 4.24
2239 2492 0.813821 GGGTTCAGAATTCCAGCTGC 59.186 55.000 8.66 0.00 32.27 5.25
2240 2493 0.813821 GGTTCAGAATTCCAGCTGCC 59.186 55.000 8.66 0.00 32.27 4.85
2241 2494 0.449388 GTTCAGAATTCCAGCTGCCG 59.551 55.000 8.66 0.00 32.27 5.69
2242 2495 0.677731 TTCAGAATTCCAGCTGCCGG 60.678 55.000 8.66 0.00 32.27 6.13
2243 2496 1.377725 CAGAATTCCAGCTGCCGGT 60.378 57.895 8.66 0.00 0.00 5.28
2244 2497 0.107703 CAGAATTCCAGCTGCCGGTA 60.108 55.000 8.66 0.00 0.00 4.02
2245 2498 0.839946 AGAATTCCAGCTGCCGGTAT 59.160 50.000 8.66 0.00 0.00 2.73
2246 2499 1.212935 AGAATTCCAGCTGCCGGTATT 59.787 47.619 8.66 6.48 0.00 1.89
2247 2500 1.604278 GAATTCCAGCTGCCGGTATTC 59.396 52.381 15.51 15.51 34.47 1.75
2248 2501 0.839946 ATTCCAGCTGCCGGTATTCT 59.160 50.000 8.66 0.00 0.00 2.40
2249 2502 0.178068 TTCCAGCTGCCGGTATTCTC 59.822 55.000 8.66 0.00 0.00 2.87
2250 2503 1.227674 CCAGCTGCCGGTATTCTCC 60.228 63.158 8.66 0.00 0.00 3.71
2251 2504 1.227674 CAGCTGCCGGTATTCTCCC 60.228 63.158 0.00 0.00 0.00 4.30
2252 2505 1.383248 AGCTGCCGGTATTCTCCCT 60.383 57.895 1.90 0.00 0.00 4.20
2253 2506 1.069935 GCTGCCGGTATTCTCCCTC 59.930 63.158 1.90 0.00 0.00 4.30
2254 2507 1.403687 GCTGCCGGTATTCTCCCTCT 61.404 60.000 1.90 0.00 0.00 3.69
2255 2508 1.123928 CTGCCGGTATTCTCCCTCTT 58.876 55.000 1.90 0.00 0.00 2.85
2256 2509 1.486726 CTGCCGGTATTCTCCCTCTTT 59.513 52.381 1.90 0.00 0.00 2.52
2257 2510 1.209504 TGCCGGTATTCTCCCTCTTTG 59.790 52.381 1.90 0.00 0.00 2.77
2258 2511 1.209747 GCCGGTATTCTCCCTCTTTGT 59.790 52.381 1.90 0.00 0.00 2.83
2259 2512 2.906354 CCGGTATTCTCCCTCTTTGTG 58.094 52.381 0.00 0.00 0.00 3.33
2260 2513 2.236395 CCGGTATTCTCCCTCTTTGTGT 59.764 50.000 0.00 0.00 0.00 3.72
2261 2514 3.307480 CCGGTATTCTCCCTCTTTGTGTT 60.307 47.826 0.00 0.00 0.00 3.32
2262 2515 3.684788 CGGTATTCTCCCTCTTTGTGTTG 59.315 47.826 0.00 0.00 0.00 3.33
2263 2516 4.562757 CGGTATTCTCCCTCTTTGTGTTGA 60.563 45.833 0.00 0.00 0.00 3.18
2264 2517 4.695928 GGTATTCTCCCTCTTTGTGTTGAC 59.304 45.833 0.00 0.00 0.00 3.18
2265 2518 2.930826 TCTCCCTCTTTGTGTTGACC 57.069 50.000 0.00 0.00 0.00 4.02
2266 2519 2.408565 TCTCCCTCTTTGTGTTGACCT 58.591 47.619 0.00 0.00 0.00 3.85
2267 2520 2.777692 TCTCCCTCTTTGTGTTGACCTT 59.222 45.455 0.00 0.00 0.00 3.50
2268 2521 2.880890 CTCCCTCTTTGTGTTGACCTTG 59.119 50.000 0.00 0.00 0.00 3.61
2269 2522 1.338020 CCCTCTTTGTGTTGACCTTGC 59.662 52.381 0.00 0.00 0.00 4.01
2270 2523 2.023673 CCTCTTTGTGTTGACCTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
2271 2524 2.624838 CCTCTTTGTGTTGACCTTGCAT 59.375 45.455 0.00 0.00 0.00 3.96
2272 2525 3.820467 CCTCTTTGTGTTGACCTTGCATA 59.180 43.478 0.00 0.00 0.00 3.14
2273 2526 4.460382 CCTCTTTGTGTTGACCTTGCATAT 59.540 41.667 0.00 0.00 0.00 1.78
2274 2527 5.047802 CCTCTTTGTGTTGACCTTGCATATT 60.048 40.000 0.00 0.00 0.00 1.28
2275 2528 6.150976 CCTCTTTGTGTTGACCTTGCATATTA 59.849 38.462 0.00 0.00 0.00 0.98
2276 2529 7.148018 CCTCTTTGTGTTGACCTTGCATATTAT 60.148 37.037 0.00 0.00 0.00 1.28
2277 2530 7.537715 TCTTTGTGTTGACCTTGCATATTATG 58.462 34.615 0.00 0.00 0.00 1.90
2278 2531 7.392953 TCTTTGTGTTGACCTTGCATATTATGA 59.607 33.333 7.87 0.00 0.00 2.15
2279 2532 6.682423 TGTGTTGACCTTGCATATTATGAG 57.318 37.500 7.87 0.00 0.00 2.90
2280 2533 6.413892 TGTGTTGACCTTGCATATTATGAGA 58.586 36.000 7.87 0.00 0.00 3.27
2281 2534 6.539826 TGTGTTGACCTTGCATATTATGAGAG 59.460 38.462 7.87 4.26 0.00 3.20
2282 2535 6.763135 GTGTTGACCTTGCATATTATGAGAGA 59.237 38.462 7.87 0.00 0.00 3.10
2283 2536 7.280876 GTGTTGACCTTGCATATTATGAGAGAA 59.719 37.037 7.87 0.00 0.00 2.87
2284 2537 7.496920 TGTTGACCTTGCATATTATGAGAGAAG 59.503 37.037 7.87 3.81 0.00 2.85
2285 2538 7.365497 TGACCTTGCATATTATGAGAGAAGA 57.635 36.000 7.87 0.00 0.00 2.87
2286 2539 7.440198 TGACCTTGCATATTATGAGAGAAGAG 58.560 38.462 7.87 2.01 0.00 2.85
2287 2540 6.767456 ACCTTGCATATTATGAGAGAAGAGG 58.233 40.000 7.87 5.66 0.00 3.69
2288 2541 5.642919 CCTTGCATATTATGAGAGAAGAGGC 59.357 44.000 7.87 0.00 0.00 4.70
2289 2542 5.813513 TGCATATTATGAGAGAAGAGGCA 57.186 39.130 7.87 0.00 32.99 4.75
2290 2543 6.370186 TGCATATTATGAGAGAAGAGGCAT 57.630 37.500 7.87 0.00 30.73 4.40
2291 2544 6.776744 TGCATATTATGAGAGAAGAGGCATT 58.223 36.000 7.87 0.00 30.73 3.56
2292 2545 7.910584 TGCATATTATGAGAGAAGAGGCATTA 58.089 34.615 7.87 0.00 30.73 1.90
2293 2546 8.039538 TGCATATTATGAGAGAAGAGGCATTAG 58.960 37.037 7.87 0.00 30.73 1.73
2294 2547 8.256605 GCATATTATGAGAGAAGAGGCATTAGA 58.743 37.037 7.87 0.00 0.00 2.10
2299 2552 9.988815 TTATGAGAGAAGAGGCATTAGAATTAC 57.011 33.333 0.00 0.00 0.00 1.89
2300 2553 7.667575 TGAGAGAAGAGGCATTAGAATTACT 57.332 36.000 0.00 0.00 0.00 2.24
2301 2554 7.721402 TGAGAGAAGAGGCATTAGAATTACTC 58.279 38.462 0.00 0.00 0.00 2.59
2302 2555 7.061566 AGAGAAGAGGCATTAGAATTACTCC 57.938 40.000 0.00 0.00 0.00 3.85
2303 2556 6.613271 AGAGAAGAGGCATTAGAATTACTCCA 59.387 38.462 0.00 0.00 0.00 3.86
2304 2557 6.587273 AGAAGAGGCATTAGAATTACTCCAC 58.413 40.000 0.00 0.00 0.00 4.02
2305 2558 5.957771 AGAGGCATTAGAATTACTCCACA 57.042 39.130 0.00 0.00 0.00 4.17
2306 2559 6.313519 AGAGGCATTAGAATTACTCCACAA 57.686 37.500 0.00 0.00 0.00 3.33
2307 2560 6.721318 AGAGGCATTAGAATTACTCCACAAA 58.279 36.000 0.00 0.00 0.00 2.83
2308 2561 6.825721 AGAGGCATTAGAATTACTCCACAAAG 59.174 38.462 0.00 0.00 0.00 2.77
2309 2562 5.358160 AGGCATTAGAATTACTCCACAAAGC 59.642 40.000 0.00 0.00 0.00 3.51
2310 2563 5.125417 GGCATTAGAATTACTCCACAAAGCA 59.875 40.000 0.00 0.00 0.00 3.91
2311 2564 6.183360 GGCATTAGAATTACTCCACAAAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
2312 2565 7.260603 GCATTAGAATTACTCCACAAAGCATT 58.739 34.615 0.00 0.00 0.00 3.56
2313 2566 8.405531 GCATTAGAATTACTCCACAAAGCATTA 58.594 33.333 0.00 0.00 0.00 1.90
2359 2612 9.747898 AATTAACAGTAGGTAAACATGATGGAA 57.252 29.630 0.00 0.00 0.00 3.53
2360 2613 9.747898 ATTAACAGTAGGTAAACATGATGGAAA 57.252 29.630 0.00 0.00 0.00 3.13
2361 2614 9.575868 TTAACAGTAGGTAAACATGATGGAAAA 57.424 29.630 0.00 0.00 0.00 2.29
2362 2615 8.650143 AACAGTAGGTAAACATGATGGAAAAT 57.350 30.769 0.00 0.00 0.00 1.82
2363 2616 8.055279 ACAGTAGGTAAACATGATGGAAAATG 57.945 34.615 0.00 0.00 0.00 2.32
2364 2617 7.888021 ACAGTAGGTAAACATGATGGAAAATGA 59.112 33.333 0.00 0.00 0.00 2.57
2365 2618 8.739039 CAGTAGGTAAACATGATGGAAAATGAA 58.261 33.333 0.00 0.00 0.00 2.57
2366 2619 8.739972 AGTAGGTAAACATGATGGAAAATGAAC 58.260 33.333 0.00 0.00 0.00 3.18
2367 2620 6.620678 AGGTAAACATGATGGAAAATGAACG 58.379 36.000 0.00 0.00 0.00 3.95
2368 2621 6.208599 AGGTAAACATGATGGAAAATGAACGT 59.791 34.615 0.00 0.00 0.00 3.99
2369 2622 7.392113 AGGTAAACATGATGGAAAATGAACGTA 59.608 33.333 0.00 0.00 0.00 3.57
2370 2623 8.188139 GGTAAACATGATGGAAAATGAACGTAT 58.812 33.333 0.00 0.00 0.00 3.06
2371 2624 9.221775 GTAAACATGATGGAAAATGAACGTATC 57.778 33.333 0.00 0.00 0.00 2.24
2372 2625 7.389803 AACATGATGGAAAATGAACGTATCA 57.610 32.000 0.00 0.00 43.67 2.15
2420 2673 4.753516 TGGTGATCTTCAATACCATCGT 57.246 40.909 0.00 0.00 38.23 3.73
2421 2674 4.441792 TGGTGATCTTCAATACCATCGTG 58.558 43.478 0.00 0.00 38.23 4.35
2422 2675 4.081142 TGGTGATCTTCAATACCATCGTGT 60.081 41.667 0.00 0.00 38.23 4.49
2423 2676 4.876107 GGTGATCTTCAATACCATCGTGTT 59.124 41.667 0.00 0.00 33.42 3.32
2424 2677 5.220662 GGTGATCTTCAATACCATCGTGTTG 60.221 44.000 0.00 0.00 41.18 3.33
2425 2678 4.332543 TGATCTTCAATACCATCGTGTTGC 59.667 41.667 0.00 0.00 40.03 4.17
2426 2679 3.006940 TCTTCAATACCATCGTGTTGCC 58.993 45.455 0.00 0.00 40.03 4.52
2427 2680 2.779755 TCAATACCATCGTGTTGCCT 57.220 45.000 0.00 0.00 40.03 4.75
2428 2681 3.897141 TCAATACCATCGTGTTGCCTA 57.103 42.857 0.00 0.00 40.03 3.93
2429 2682 4.415881 TCAATACCATCGTGTTGCCTAT 57.584 40.909 0.00 0.00 40.03 2.57
2430 2683 4.377021 TCAATACCATCGTGTTGCCTATC 58.623 43.478 0.00 0.00 40.03 2.08
2431 2684 4.126437 CAATACCATCGTGTTGCCTATCA 58.874 43.478 0.00 0.00 34.81 2.15
2432 2685 2.779755 ACCATCGTGTTGCCTATCAA 57.220 45.000 0.00 0.00 0.00 2.57
2433 2686 2.632377 ACCATCGTGTTGCCTATCAAG 58.368 47.619 0.00 0.00 34.91 3.02
2434 2687 1.331756 CCATCGTGTTGCCTATCAAGC 59.668 52.381 0.00 0.00 34.91 4.01
2435 2688 2.009051 CATCGTGTTGCCTATCAAGCA 58.991 47.619 0.00 0.00 38.81 3.91
2436 2689 1.438651 TCGTGTTGCCTATCAAGCAC 58.561 50.000 0.00 0.00 40.69 4.40
2437 2690 1.155889 CGTGTTGCCTATCAAGCACA 58.844 50.000 0.00 0.00 40.69 4.57
2438 2691 1.535028 CGTGTTGCCTATCAAGCACAA 59.465 47.619 0.00 0.00 40.69 3.33
2439 2692 2.665519 CGTGTTGCCTATCAAGCACAAC 60.666 50.000 0.00 0.00 40.69 3.32
2440 2693 1.885887 TGTTGCCTATCAAGCACAACC 59.114 47.619 0.00 0.00 40.69 3.77
2441 2694 2.162681 GTTGCCTATCAAGCACAACCT 58.837 47.619 0.00 0.00 40.69 3.50
2442 2695 2.113860 TGCCTATCAAGCACAACCTC 57.886 50.000 0.00 0.00 34.69 3.85
2443 2696 1.630369 TGCCTATCAAGCACAACCTCT 59.370 47.619 0.00 0.00 34.69 3.69
2444 2697 2.284190 GCCTATCAAGCACAACCTCTC 58.716 52.381 0.00 0.00 0.00 3.20
2445 2698 2.093235 GCCTATCAAGCACAACCTCTCT 60.093 50.000 0.00 0.00 0.00 3.10
2446 2699 3.620966 GCCTATCAAGCACAACCTCTCTT 60.621 47.826 0.00 0.00 0.00 2.85
2447 2700 4.187694 CCTATCAAGCACAACCTCTCTTC 58.812 47.826 0.00 0.00 0.00 2.87
2448 2701 2.550830 TCAAGCACAACCTCTCTTCC 57.449 50.000 0.00 0.00 0.00 3.46
2449 2702 1.072331 TCAAGCACAACCTCTCTTCCC 59.928 52.381 0.00 0.00 0.00 3.97
2450 2703 1.140312 AAGCACAACCTCTCTTCCCA 58.860 50.000 0.00 0.00 0.00 4.37
2451 2704 1.140312 AGCACAACCTCTCTTCCCAA 58.860 50.000 0.00 0.00 0.00 4.12
2452 2705 1.072965 AGCACAACCTCTCTTCCCAAG 59.927 52.381 0.00 0.00 0.00 3.61
2453 2706 1.072331 GCACAACCTCTCTTCCCAAGA 59.928 52.381 0.00 0.00 35.87 3.02
2454 2707 2.772287 CACAACCTCTCTTCCCAAGAC 58.228 52.381 0.00 0.00 33.12 3.01
2455 2708 2.370189 CACAACCTCTCTTCCCAAGACT 59.630 50.000 0.00 0.00 33.12 3.24
2456 2709 3.049344 ACAACCTCTCTTCCCAAGACTT 58.951 45.455 0.00 0.00 33.12 3.01
2457 2710 3.459969 ACAACCTCTCTTCCCAAGACTTT 59.540 43.478 0.00 0.00 33.12 2.66
2458 2711 3.778954 ACCTCTCTTCCCAAGACTTTG 57.221 47.619 0.00 0.00 33.12 2.77
2459 2712 3.049344 ACCTCTCTTCCCAAGACTTTGT 58.951 45.455 0.00 0.00 33.12 2.83
2460 2713 3.071747 ACCTCTCTTCCCAAGACTTTGTC 59.928 47.826 0.00 0.00 33.12 3.18
2461 2714 3.321497 CTCTCTTCCCAAGACTTTGTCG 58.679 50.000 0.00 0.00 37.67 4.35
2462 2715 1.801178 CTCTTCCCAAGACTTTGTCGC 59.199 52.381 0.00 0.00 37.67 5.19
2463 2716 0.875059 CTTCCCAAGACTTTGTCGCC 59.125 55.000 0.00 0.00 37.67 5.54
2464 2717 0.536460 TTCCCAAGACTTTGTCGCCC 60.536 55.000 0.00 0.00 37.67 6.13
2465 2718 1.073199 CCCAAGACTTTGTCGCCCT 59.927 57.895 0.00 0.00 37.67 5.19
2466 2719 0.955919 CCCAAGACTTTGTCGCCCTC 60.956 60.000 0.00 0.00 37.67 4.30
2467 2720 0.955919 CCAAGACTTTGTCGCCCTCC 60.956 60.000 0.00 0.00 37.67 4.30
2468 2721 0.035458 CAAGACTTTGTCGCCCTCCT 59.965 55.000 0.00 0.00 37.67 3.69
2469 2722 0.765510 AAGACTTTGTCGCCCTCCTT 59.234 50.000 0.00 0.00 37.67 3.36
2470 2723 0.035458 AGACTTTGTCGCCCTCCTTG 59.965 55.000 0.00 0.00 37.67 3.61
2471 2724 1.578206 GACTTTGTCGCCCTCCTTGC 61.578 60.000 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.526954 CCTCCATTTCGCAATGCAGC 60.527 55.000 5.91 0.00 38.88 5.25
102 103 3.376546 GCAATCAGAACTCCAGATTCCAC 59.623 47.826 0.00 0.00 30.04 4.02
160 161 4.925068 GTCATCTTGGACCACAAATATGC 58.075 43.478 0.00 0.00 38.91 3.14
224 257 3.650281 ATCATGTGGTCATACAGGCAA 57.350 42.857 0.00 0.00 32.76 4.52
377 421 7.504924 AAAAAGAATCTTCATCGGTGTACAA 57.495 32.000 0.00 0.00 0.00 2.41
402 446 2.907917 CGGTGTCCCCCGCAAAAA 60.908 61.111 0.00 0.00 41.78 1.94
409 453 0.254747 TGAATTCATCGGTGTCCCCC 59.745 55.000 3.38 0.00 0.00 5.40
410 454 2.122783 TTGAATTCATCGGTGTCCCC 57.877 50.000 9.40 0.00 0.00 4.81
411 455 4.196193 TGTATTGAATTCATCGGTGTCCC 58.804 43.478 9.40 0.00 0.00 4.46
412 456 4.876107 ACTGTATTGAATTCATCGGTGTCC 59.124 41.667 9.40 0.00 0.00 4.02
413 457 7.534085 TTACTGTATTGAATTCATCGGTGTC 57.466 36.000 20.54 7.14 0.00 3.67
414 458 7.606456 AGTTTACTGTATTGAATTCATCGGTGT 59.394 33.333 20.54 14.84 0.00 4.16
415 459 7.974675 AGTTTACTGTATTGAATTCATCGGTG 58.025 34.615 20.54 11.21 0.00 4.94
416 460 7.280205 GGAGTTTACTGTATTGAATTCATCGGT 59.720 37.037 9.40 15.00 0.00 4.69
417 461 7.516785 CGGAGTTTACTGTATTGAATTCATCGG 60.517 40.741 9.40 10.33 0.00 4.18
418 462 7.337718 CGGAGTTTACTGTATTGAATTCATCG 58.662 38.462 9.40 0.00 0.00 3.84
419 463 7.126398 GCGGAGTTTACTGTATTGAATTCATC 58.874 38.462 9.40 4.13 0.00 2.92
420 464 6.038271 GGCGGAGTTTACTGTATTGAATTCAT 59.962 38.462 9.40 2.50 0.00 2.57
421 465 5.353123 GGCGGAGTTTACTGTATTGAATTCA 59.647 40.000 3.38 3.38 0.00 2.57
422 466 5.353123 TGGCGGAGTTTACTGTATTGAATTC 59.647 40.000 0.00 0.00 0.00 2.17
423 467 5.123344 GTGGCGGAGTTTACTGTATTGAATT 59.877 40.000 0.00 0.00 0.00 2.17
424 468 4.634443 GTGGCGGAGTTTACTGTATTGAAT 59.366 41.667 0.00 0.00 0.00 2.57
425 469 3.998341 GTGGCGGAGTTTACTGTATTGAA 59.002 43.478 0.00 0.00 0.00 2.69
426 470 3.592059 GTGGCGGAGTTTACTGTATTGA 58.408 45.455 0.00 0.00 0.00 2.57
427 471 2.347452 CGTGGCGGAGTTTACTGTATTG 59.653 50.000 0.00 0.00 0.00 1.90
460 504 4.725556 TCAAACTGTCACGAGTTATTGC 57.274 40.909 0.00 0.00 35.01 3.56
508 679 2.843401 TGCACCATAACAGGTACGTT 57.157 45.000 0.00 0.00 40.77 3.99
509 680 3.267483 GAATGCACCATAACAGGTACGT 58.733 45.455 0.00 0.00 40.77 3.57
510 681 3.266636 TGAATGCACCATAACAGGTACG 58.733 45.455 0.00 0.00 40.77 3.67
511 682 5.637006 TTTGAATGCACCATAACAGGTAC 57.363 39.130 0.00 0.00 40.77 3.34
512 683 6.040955 TGTTTTTGAATGCACCATAACAGGTA 59.959 34.615 0.00 0.00 40.77 3.08
513 684 5.163364 TGTTTTTGAATGCACCATAACAGGT 60.163 36.000 0.00 0.00 44.48 4.00
514 685 5.295950 TGTTTTTGAATGCACCATAACAGG 58.704 37.500 0.00 0.00 0.00 4.00
515 686 6.841443 TTGTTTTTGAATGCACCATAACAG 57.159 33.333 13.60 0.00 0.00 3.16
516 687 7.467623 GTTTTGTTTTTGAATGCACCATAACA 58.532 30.769 0.00 2.12 0.00 2.41
517 688 6.626882 CGTTTTGTTTTTGAATGCACCATAAC 59.373 34.615 0.00 0.00 0.00 1.89
518 689 6.313905 ACGTTTTGTTTTTGAATGCACCATAA 59.686 30.769 0.00 0.00 0.00 1.90
519 690 5.812642 ACGTTTTGTTTTTGAATGCACCATA 59.187 32.000 0.00 0.00 0.00 2.74
520 691 4.633565 ACGTTTTGTTTTTGAATGCACCAT 59.366 33.333 0.00 0.00 0.00 3.55
521 692 3.997021 ACGTTTTGTTTTTGAATGCACCA 59.003 34.783 0.00 0.00 0.00 4.17
522 693 4.591998 ACGTTTTGTTTTTGAATGCACC 57.408 36.364 0.00 0.00 0.00 5.01
523 694 5.062308 TGGTACGTTTTGTTTTTGAATGCAC 59.938 36.000 0.00 0.00 0.00 4.57
524 695 5.168569 TGGTACGTTTTGTTTTTGAATGCA 58.831 33.333 0.00 0.00 0.00 3.96
525 696 5.289917 ACTGGTACGTTTTGTTTTTGAATGC 59.710 36.000 0.00 0.00 0.00 3.56
526 697 6.879188 ACTGGTACGTTTTGTTTTTGAATG 57.121 33.333 0.00 0.00 0.00 2.67
527 698 6.869388 ACAACTGGTACGTTTTGTTTTTGAAT 59.131 30.769 0.00 0.00 0.00 2.57
528 699 6.214399 ACAACTGGTACGTTTTGTTTTTGAA 58.786 32.000 0.00 0.00 0.00 2.69
529 700 5.770417 ACAACTGGTACGTTTTGTTTTTGA 58.230 33.333 0.00 0.00 0.00 2.69
530 701 6.074249 ACAACAACTGGTACGTTTTGTTTTTG 60.074 34.615 12.24 7.01 35.63 2.44
531 702 5.984323 ACAACAACTGGTACGTTTTGTTTTT 59.016 32.000 12.24 3.66 31.07 1.94
532 703 5.530712 ACAACAACTGGTACGTTTTGTTTT 58.469 33.333 12.24 6.28 31.07 2.43
533 704 5.123805 ACAACAACTGGTACGTTTTGTTT 57.876 34.783 12.24 5.04 31.07 2.83
534 705 4.769859 ACAACAACTGGTACGTTTTGTT 57.230 36.364 0.00 10.09 31.07 2.83
535 706 7.733402 ATATACAACAACTGGTACGTTTTGT 57.267 32.000 0.00 13.21 34.57 2.83
538 709 8.445493 GCTTAATATACAACAACTGGTACGTTT 58.555 33.333 0.00 0.00 0.00 3.60
540 711 7.098477 TGCTTAATATACAACAACTGGTACGT 58.902 34.615 0.00 0.00 0.00 3.57
637 827 8.888716 GTTTTACCAAATTTTTCCAGTGATGTT 58.111 29.630 0.00 0.00 0.00 2.71
641 831 7.616313 ACTGTTTTACCAAATTTTTCCAGTGA 58.384 30.769 0.00 0.00 0.00 3.41
642 832 7.841915 ACTGTTTTACCAAATTTTTCCAGTG 57.158 32.000 0.00 0.00 0.00 3.66
981 1218 1.003355 ATGCTTAGTGTGGCGCTGT 60.003 52.632 7.64 0.00 0.00 4.40
1316 1553 1.478654 GGTTTGCCAAACTCCTCCTCA 60.479 52.381 18.97 0.00 41.14 3.86
1405 1642 0.312102 GTTGTGCTTCTTGGAGGTGC 59.688 55.000 0.00 0.00 0.00 5.01
1498 1735 3.001395 CGATGGATCGGTCTCACTAAC 57.999 52.381 0.00 0.00 45.93 2.34
1539 1778 2.238646 TGATGGAACTACGCTCCCAAAT 59.761 45.455 0.00 0.00 31.77 2.32
1575 1814 1.082194 ACCATTACCAGGAGGGAAGGA 59.918 52.381 0.00 0.00 42.23 3.36
1604 1845 3.250744 CTGAAAACAGAGCATTGGCATG 58.749 45.455 0.00 0.00 44.61 4.06
1711 1960 7.381139 GGACATATTTTCAACGACACAAACAAT 59.619 33.333 0.00 0.00 0.00 2.71
1739 1991 0.179081 GTAATCGTGGGACTGCCTCC 60.179 60.000 0.00 0.00 38.55 4.30
1765 2017 9.409312 TGCAAACAACTCATGAATACATTAAAG 57.591 29.630 0.00 0.00 34.15 1.85
1860 2113 8.848474 ATTAGGGACCATTAGAACAATTATCG 57.152 34.615 0.00 0.00 0.00 2.92
1911 2164 8.554835 TCAACCGAATCATGTACTATTCAAAA 57.445 30.769 13.13 0.00 32.70 2.44
1948 2201 7.559590 AGTATTTCTATGCCAATGACTTGTC 57.440 36.000 0.00 0.00 0.00 3.18
1978 2231 7.393796 CCCGTCTTCAAGTCCATATATACTACT 59.606 40.741 0.00 0.00 0.00 2.57
1979 2232 7.392673 TCCCGTCTTCAAGTCCATATATACTAC 59.607 40.741 0.00 0.00 0.00 2.73
2001 2254 3.173668 TGTCCAACTCGATTATTCCCG 57.826 47.619 0.00 0.00 0.00 5.14
2042 2295 8.704668 TGATTCACATCCTAAGTACATGTACAT 58.295 33.333 32.02 24.82 38.48 2.29
2043 2296 8.073467 TGATTCACATCCTAAGTACATGTACA 57.927 34.615 32.02 15.54 38.48 2.90
2044 2297 8.818057 GTTGATTCACATCCTAAGTACATGTAC 58.182 37.037 25.51 25.51 36.35 2.90
2045 2298 8.758829 AGTTGATTCACATCCTAAGTACATGTA 58.241 33.333 0.08 0.08 0.00 2.29
2046 2299 7.624549 AGTTGATTCACATCCTAAGTACATGT 58.375 34.615 2.69 2.69 0.00 3.21
2047 2300 8.498054 AAGTTGATTCACATCCTAAGTACATG 57.502 34.615 0.00 0.00 0.00 3.21
2055 2308 8.812972 ACACTAAGTAAGTTGATTCACATCCTA 58.187 33.333 0.00 0.00 35.76 2.94
2082 2335 9.043548 ACTAGGTTACCAAGTAGTGTTTGATAT 57.956 33.333 3.51 0.00 0.00 1.63
2123 2376 8.307483 TGGAATATTGGAGCAAATAACGAAAAA 58.693 29.630 0.00 0.00 0.00 1.94
2135 2388 8.641541 GGAGAATTATTTTGGAATATTGGAGCA 58.358 33.333 0.00 0.00 0.00 4.26
2136 2389 7.809806 CGGAGAATTATTTTGGAATATTGGAGC 59.190 37.037 0.00 0.00 0.00 4.70
2137 2390 8.850156 ACGGAGAATTATTTTGGAATATTGGAG 58.150 33.333 0.00 0.00 0.00 3.86
2138 2391 8.760980 ACGGAGAATTATTTTGGAATATTGGA 57.239 30.769 0.00 0.00 0.00 3.53
2150 2403 9.788960 GAGCTGAAAATTTACGGAGAATTATTT 57.211 29.630 0.00 0.00 0.00 1.40
2151 2404 8.956426 TGAGCTGAAAATTTACGGAGAATTATT 58.044 29.630 0.00 0.00 0.00 1.40
2152 2405 8.506168 TGAGCTGAAAATTTACGGAGAATTAT 57.494 30.769 0.00 0.00 0.00 1.28
2153 2406 7.915293 TGAGCTGAAAATTTACGGAGAATTA 57.085 32.000 0.00 0.00 0.00 1.40
2154 2407 6.817765 TGAGCTGAAAATTTACGGAGAATT 57.182 33.333 0.00 0.00 0.00 2.17
2155 2408 7.396540 AATGAGCTGAAAATTTACGGAGAAT 57.603 32.000 0.00 0.00 0.00 2.40
2156 2409 6.817765 AATGAGCTGAAAATTTACGGAGAA 57.182 33.333 0.00 0.00 0.00 2.87
2157 2410 6.349280 CCAAATGAGCTGAAAATTTACGGAGA 60.349 38.462 0.00 0.00 0.00 3.71
2158 2411 5.801947 CCAAATGAGCTGAAAATTTACGGAG 59.198 40.000 0.00 0.00 0.00 4.63
2159 2412 5.475220 TCCAAATGAGCTGAAAATTTACGGA 59.525 36.000 0.00 0.00 0.00 4.69
2160 2413 5.708948 TCCAAATGAGCTGAAAATTTACGG 58.291 37.500 0.00 0.00 0.00 4.02
2161 2414 7.636259 TTTCCAAATGAGCTGAAAATTTACG 57.364 32.000 0.00 0.00 0.00 3.18
2162 2415 8.992073 ACATTTCCAAATGAGCTGAAAATTTAC 58.008 29.630 17.12 0.00 46.72 2.01
2163 2416 9.558396 AACATTTCCAAATGAGCTGAAAATTTA 57.442 25.926 17.12 0.00 46.72 1.40
2164 2417 8.454570 AACATTTCCAAATGAGCTGAAAATTT 57.545 26.923 17.12 0.00 46.72 1.82
2165 2418 7.716123 TGAACATTTCCAAATGAGCTGAAAATT 59.284 29.630 17.12 0.03 46.72 1.82
2166 2419 7.218614 TGAACATTTCCAAATGAGCTGAAAAT 58.781 30.769 17.12 0.00 46.72 1.82
2167 2420 6.580788 TGAACATTTCCAAATGAGCTGAAAA 58.419 32.000 17.12 0.00 46.72 2.29
2168 2421 6.040729 TCTGAACATTTCCAAATGAGCTGAAA 59.959 34.615 17.12 0.00 46.72 2.69
2169 2422 5.535783 TCTGAACATTTCCAAATGAGCTGAA 59.464 36.000 17.12 0.00 46.72 3.02
2170 2423 5.072055 TCTGAACATTTCCAAATGAGCTGA 58.928 37.500 17.12 13.38 46.72 4.26
2171 2424 5.381174 TCTGAACATTTCCAAATGAGCTG 57.619 39.130 17.12 11.80 46.72 4.24
2172 2425 6.600882 ATTCTGAACATTTCCAAATGAGCT 57.399 33.333 17.12 0.00 46.72 4.09
2173 2426 6.976925 CCTATTCTGAACATTTCCAAATGAGC 59.023 38.462 17.12 9.49 46.72 4.26
2174 2427 8.059798 ACCTATTCTGAACATTTCCAAATGAG 57.940 34.615 17.12 6.09 46.72 2.90
2175 2428 9.527157 TTACCTATTCTGAACATTTCCAAATGA 57.473 29.630 17.12 0.00 46.72 2.57
2177 2430 9.533831 AGTTACCTATTCTGAACATTTCCAAAT 57.466 29.630 0.00 0.00 0.00 2.32
2178 2431 8.934023 AGTTACCTATTCTGAACATTTCCAAA 57.066 30.769 0.00 0.00 0.00 3.28
2179 2432 8.383175 AGAGTTACCTATTCTGAACATTTCCAA 58.617 33.333 0.00 0.00 0.00 3.53
2180 2433 7.824289 CAGAGTTACCTATTCTGAACATTTCCA 59.176 37.037 0.00 0.00 40.54 3.53
2181 2434 8.041323 TCAGAGTTACCTATTCTGAACATTTCC 58.959 37.037 1.24 0.00 43.04 3.13
2182 2435 8.874816 GTCAGAGTTACCTATTCTGAACATTTC 58.125 37.037 5.11 0.00 46.24 2.17
2183 2436 7.545965 CGTCAGAGTTACCTATTCTGAACATTT 59.454 37.037 5.11 0.00 46.24 2.32
2184 2437 7.036220 CGTCAGAGTTACCTATTCTGAACATT 58.964 38.462 5.11 0.00 46.24 2.71
2185 2438 6.153000 ACGTCAGAGTTACCTATTCTGAACAT 59.847 38.462 5.11 0.00 46.24 2.71
2186 2439 5.475909 ACGTCAGAGTTACCTATTCTGAACA 59.524 40.000 5.11 0.00 46.24 3.18
2187 2440 5.952033 ACGTCAGAGTTACCTATTCTGAAC 58.048 41.667 5.11 0.82 46.24 3.18
2188 2441 6.183360 GCTACGTCAGAGTTACCTATTCTGAA 60.183 42.308 5.11 0.00 46.24 3.02
2189 2442 5.296283 GCTACGTCAGAGTTACCTATTCTGA 59.704 44.000 0.00 0.00 43.59 3.27
2190 2443 5.297278 AGCTACGTCAGAGTTACCTATTCTG 59.703 44.000 0.00 0.00 39.69 3.02
2191 2444 5.438833 AGCTACGTCAGAGTTACCTATTCT 58.561 41.667 0.00 0.00 0.00 2.40
2192 2445 5.754543 AGCTACGTCAGAGTTACCTATTC 57.245 43.478 0.00 0.00 0.00 1.75
2193 2446 6.527057 AAAGCTACGTCAGAGTTACCTATT 57.473 37.500 0.00 0.00 0.00 1.73
2194 2447 6.377712 AGAAAAGCTACGTCAGAGTTACCTAT 59.622 38.462 0.00 0.00 0.00 2.57
2195 2448 5.709164 AGAAAAGCTACGTCAGAGTTACCTA 59.291 40.000 0.00 0.00 0.00 3.08
2196 2449 4.523558 AGAAAAGCTACGTCAGAGTTACCT 59.476 41.667 0.00 0.00 0.00 3.08
2197 2450 4.621886 CAGAAAAGCTACGTCAGAGTTACC 59.378 45.833 0.00 0.00 0.00 2.85
2198 2451 4.621886 CCAGAAAAGCTACGTCAGAGTTAC 59.378 45.833 0.00 0.00 0.00 2.50
2199 2452 4.321750 CCCAGAAAAGCTACGTCAGAGTTA 60.322 45.833 0.00 0.00 0.00 2.24
2200 2453 3.555168 CCCAGAAAAGCTACGTCAGAGTT 60.555 47.826 0.00 0.00 0.00 3.01
2201 2454 2.028930 CCCAGAAAAGCTACGTCAGAGT 60.029 50.000 0.00 0.00 0.00 3.24
2202 2455 2.028930 ACCCAGAAAAGCTACGTCAGAG 60.029 50.000 0.00 0.00 0.00 3.35
2203 2456 1.968493 ACCCAGAAAAGCTACGTCAGA 59.032 47.619 0.00 0.00 0.00 3.27
2204 2457 2.457366 ACCCAGAAAAGCTACGTCAG 57.543 50.000 0.00 0.00 0.00 3.51
2205 2458 2.103432 TGAACCCAGAAAAGCTACGTCA 59.897 45.455 0.00 0.00 0.00 4.35
2206 2459 2.737252 CTGAACCCAGAAAAGCTACGTC 59.263 50.000 0.00 0.00 43.02 4.34
2207 2460 2.367567 TCTGAACCCAGAAAAGCTACGT 59.632 45.455 0.00 0.00 45.74 3.57
2208 2461 3.040147 TCTGAACCCAGAAAAGCTACG 57.960 47.619 0.00 0.00 45.74 3.51
2217 2470 1.988107 AGCTGGAATTCTGAACCCAGA 59.012 47.619 29.66 7.36 46.84 3.86
2218 2471 2.089980 CAGCTGGAATTCTGAACCCAG 58.910 52.381 24.87 24.87 46.67 4.45
2219 2472 1.887956 GCAGCTGGAATTCTGAACCCA 60.888 52.381 17.12 11.39 32.26 4.51
2220 2473 0.813821 GCAGCTGGAATTCTGAACCC 59.186 55.000 17.12 0.00 32.26 4.11
2221 2474 0.813821 GGCAGCTGGAATTCTGAACC 59.186 55.000 17.12 0.00 32.26 3.62
2222 2475 0.449388 CGGCAGCTGGAATTCTGAAC 59.551 55.000 17.12 0.00 32.26 3.18
2223 2476 0.677731 CCGGCAGCTGGAATTCTGAA 60.678 55.000 16.28 0.00 32.26 3.02
2224 2477 1.078214 CCGGCAGCTGGAATTCTGA 60.078 57.895 16.28 0.00 32.26 3.27
2225 2478 0.107703 TACCGGCAGCTGGAATTCTG 60.108 55.000 28.29 2.83 33.36 3.02
2226 2479 0.839946 ATACCGGCAGCTGGAATTCT 59.160 50.000 28.29 6.40 33.36 2.40
2227 2480 1.604278 GAATACCGGCAGCTGGAATTC 59.396 52.381 28.29 10.69 33.36 2.17
2228 2481 1.212935 AGAATACCGGCAGCTGGAATT 59.787 47.619 28.29 7.22 33.36 2.17
2229 2482 0.839946 AGAATACCGGCAGCTGGAAT 59.160 50.000 28.29 11.93 33.36 3.01
2230 2483 0.178068 GAGAATACCGGCAGCTGGAA 59.822 55.000 28.29 0.00 33.36 3.53
2231 2484 1.686325 GGAGAATACCGGCAGCTGGA 61.686 60.000 28.29 10.99 33.36 3.86
2232 2485 1.227674 GGAGAATACCGGCAGCTGG 60.228 63.158 19.77 19.77 35.68 4.85
2233 2486 1.227674 GGGAGAATACCGGCAGCTG 60.228 63.158 10.11 10.11 0.00 4.24
2234 2487 1.383248 AGGGAGAATACCGGCAGCT 60.383 57.895 0.00 0.00 0.00 4.24
2235 2488 1.069935 GAGGGAGAATACCGGCAGC 59.930 63.158 0.00 0.00 0.00 5.25
2236 2489 1.123928 AAGAGGGAGAATACCGGCAG 58.876 55.000 0.00 0.00 0.00 4.85
2237 2490 1.209504 CAAAGAGGGAGAATACCGGCA 59.790 52.381 0.00 0.00 0.00 5.69
2238 2491 1.209747 ACAAAGAGGGAGAATACCGGC 59.790 52.381 0.00 0.00 0.00 6.13
2239 2492 2.236395 ACACAAAGAGGGAGAATACCGG 59.764 50.000 0.00 0.00 0.00 5.28
2240 2493 3.611766 ACACAAAGAGGGAGAATACCG 57.388 47.619 0.00 0.00 0.00 4.02
2241 2494 4.695928 GTCAACACAAAGAGGGAGAATACC 59.304 45.833 0.00 0.00 0.00 2.73
2242 2495 4.695928 GGTCAACACAAAGAGGGAGAATAC 59.304 45.833 0.00 0.00 0.00 1.89
2243 2496 4.597507 AGGTCAACACAAAGAGGGAGAATA 59.402 41.667 0.00 0.00 0.00 1.75
2244 2497 3.395941 AGGTCAACACAAAGAGGGAGAAT 59.604 43.478 0.00 0.00 0.00 2.40
2245 2498 2.777692 AGGTCAACACAAAGAGGGAGAA 59.222 45.455 0.00 0.00 0.00 2.87
2246 2499 2.408565 AGGTCAACACAAAGAGGGAGA 58.591 47.619 0.00 0.00 0.00 3.71
2247 2500 2.880890 CAAGGTCAACACAAAGAGGGAG 59.119 50.000 0.00 0.00 0.00 4.30
2248 2501 2.930950 CAAGGTCAACACAAAGAGGGA 58.069 47.619 0.00 0.00 0.00 4.20
2249 2502 1.338020 GCAAGGTCAACACAAAGAGGG 59.662 52.381 0.00 0.00 0.00 4.30
2250 2503 2.023673 TGCAAGGTCAACACAAAGAGG 58.976 47.619 0.00 0.00 0.00 3.69
2251 2504 3.996150 ATGCAAGGTCAACACAAAGAG 57.004 42.857 0.00 0.00 0.00 2.85
2252 2505 7.392953 TCATAATATGCAAGGTCAACACAAAGA 59.607 33.333 0.00 0.00 0.00 2.52
2253 2506 7.537715 TCATAATATGCAAGGTCAACACAAAG 58.462 34.615 0.00 0.00 0.00 2.77
2254 2507 7.392953 TCTCATAATATGCAAGGTCAACACAAA 59.607 33.333 0.00 0.00 0.00 2.83
2255 2508 6.883756 TCTCATAATATGCAAGGTCAACACAA 59.116 34.615 0.00 0.00 0.00 3.33
2256 2509 6.413892 TCTCATAATATGCAAGGTCAACACA 58.586 36.000 0.00 0.00 0.00 3.72
2257 2510 6.763135 TCTCTCATAATATGCAAGGTCAACAC 59.237 38.462 0.00 0.00 0.00 3.32
2258 2511 6.888105 TCTCTCATAATATGCAAGGTCAACA 58.112 36.000 0.00 0.00 0.00 3.33
2259 2512 7.712639 TCTTCTCTCATAATATGCAAGGTCAAC 59.287 37.037 0.00 0.00 0.00 3.18
2260 2513 7.795047 TCTTCTCTCATAATATGCAAGGTCAA 58.205 34.615 0.00 0.00 0.00 3.18
2261 2514 7.365497 TCTTCTCTCATAATATGCAAGGTCA 57.635 36.000 0.00 0.00 0.00 4.02
2262 2515 6.873076 CCTCTTCTCTCATAATATGCAAGGTC 59.127 42.308 0.00 0.00 0.00 3.85
2263 2516 6.743773 GCCTCTTCTCTCATAATATGCAAGGT 60.744 42.308 0.00 0.00 0.00 3.50
2264 2517 5.642919 GCCTCTTCTCTCATAATATGCAAGG 59.357 44.000 0.00 0.00 0.00 3.61
2265 2518 6.228995 TGCCTCTTCTCTCATAATATGCAAG 58.771 40.000 0.00 0.00 0.00 4.01
2266 2519 6.178607 TGCCTCTTCTCTCATAATATGCAA 57.821 37.500 0.00 0.00 0.00 4.08
2267 2520 5.813513 TGCCTCTTCTCTCATAATATGCA 57.186 39.130 0.00 0.00 0.00 3.96
2268 2521 8.256605 TCTAATGCCTCTTCTCTCATAATATGC 58.743 37.037 0.00 0.00 0.00 3.14
2273 2526 9.988815 GTAATTCTAATGCCTCTTCTCTCATAA 57.011 33.333 0.00 0.00 0.00 1.90
2274 2527 9.373450 AGTAATTCTAATGCCTCTTCTCTCATA 57.627 33.333 0.00 0.00 0.00 2.15
2275 2528 8.261349 AGTAATTCTAATGCCTCTTCTCTCAT 57.739 34.615 0.00 0.00 0.00 2.90
2276 2529 7.201956 GGAGTAATTCTAATGCCTCTTCTCTCA 60.202 40.741 0.00 0.00 0.00 3.27
2277 2530 7.151976 GGAGTAATTCTAATGCCTCTTCTCTC 58.848 42.308 0.00 0.00 0.00 3.20
2278 2531 6.613271 TGGAGTAATTCTAATGCCTCTTCTCT 59.387 38.462 0.00 0.00 0.00 3.10
2279 2532 6.704050 GTGGAGTAATTCTAATGCCTCTTCTC 59.296 42.308 0.00 0.00 0.00 2.87
2280 2533 6.156949 TGTGGAGTAATTCTAATGCCTCTTCT 59.843 38.462 0.00 0.00 0.00 2.85
2281 2534 6.349300 TGTGGAGTAATTCTAATGCCTCTTC 58.651 40.000 0.00 0.00 0.00 2.87
2282 2535 6.313519 TGTGGAGTAATTCTAATGCCTCTT 57.686 37.500 0.00 0.00 0.00 2.85
2283 2536 5.957771 TGTGGAGTAATTCTAATGCCTCT 57.042 39.130 0.00 0.00 0.00 3.69
2284 2537 6.458888 GCTTTGTGGAGTAATTCTAATGCCTC 60.459 42.308 0.00 0.00 0.00 4.70
2285 2538 5.358160 GCTTTGTGGAGTAATTCTAATGCCT 59.642 40.000 0.00 0.00 0.00 4.75
2286 2539 5.125417 TGCTTTGTGGAGTAATTCTAATGCC 59.875 40.000 0.00 0.00 0.00 4.40
2287 2540 6.194796 TGCTTTGTGGAGTAATTCTAATGC 57.805 37.500 0.00 0.00 0.00 3.56
2333 2586 9.747898 TTCCATCATGTTTACCTACTGTTAATT 57.252 29.630 0.00 0.00 0.00 1.40
2334 2587 9.747898 TTTCCATCATGTTTACCTACTGTTAAT 57.252 29.630 0.00 0.00 0.00 1.40
2335 2588 9.575868 TTTTCCATCATGTTTACCTACTGTTAA 57.424 29.630 0.00 0.00 0.00 2.01
2336 2589 9.747898 ATTTTCCATCATGTTTACCTACTGTTA 57.252 29.630 0.00 0.00 0.00 2.41
2337 2590 8.522830 CATTTTCCATCATGTTTACCTACTGTT 58.477 33.333 0.00 0.00 0.00 3.16
2338 2591 7.888021 TCATTTTCCATCATGTTTACCTACTGT 59.112 33.333 0.00 0.00 0.00 3.55
2339 2592 8.279970 TCATTTTCCATCATGTTTACCTACTG 57.720 34.615 0.00 0.00 0.00 2.74
2340 2593 8.739972 GTTCATTTTCCATCATGTTTACCTACT 58.260 33.333 0.00 0.00 0.00 2.57
2341 2594 7.696453 CGTTCATTTTCCATCATGTTTACCTAC 59.304 37.037 0.00 0.00 0.00 3.18
2342 2595 7.392113 ACGTTCATTTTCCATCATGTTTACCTA 59.608 33.333 0.00 0.00 0.00 3.08
2343 2596 6.208599 ACGTTCATTTTCCATCATGTTTACCT 59.791 34.615 0.00 0.00 0.00 3.08
2344 2597 6.386654 ACGTTCATTTTCCATCATGTTTACC 58.613 36.000 0.00 0.00 0.00 2.85
2345 2598 9.221775 GATACGTTCATTTTCCATCATGTTTAC 57.778 33.333 0.00 0.00 0.00 2.01
2346 2599 8.951243 TGATACGTTCATTTTCCATCATGTTTA 58.049 29.630 0.00 0.00 0.00 2.01
2347 2600 7.825681 TGATACGTTCATTTTCCATCATGTTT 58.174 30.769 0.00 0.00 0.00 2.83
2348 2601 7.389803 TGATACGTTCATTTTCCATCATGTT 57.610 32.000 0.00 0.00 0.00 2.71
2349 2602 7.572523 ATGATACGTTCATTTTCCATCATGT 57.427 32.000 0.00 0.00 42.62 3.21
2399 2652 4.081142 ACACGATGGTATTGAAGATCACCA 60.081 41.667 3.07 3.07 44.76 4.17
2400 2653 4.442706 ACACGATGGTATTGAAGATCACC 58.557 43.478 0.00 0.00 0.00 4.02
2401 2654 5.727791 GCAACACGATGGTATTGAAGATCAC 60.728 44.000 2.76 0.00 32.22 3.06
2402 2655 4.332543 GCAACACGATGGTATTGAAGATCA 59.667 41.667 2.76 0.00 32.22 2.92
2403 2656 4.260784 GGCAACACGATGGTATTGAAGATC 60.261 45.833 2.76 0.00 32.22 2.75
2404 2657 3.627577 GGCAACACGATGGTATTGAAGAT 59.372 43.478 2.76 0.00 32.22 2.40
2405 2658 3.006940 GGCAACACGATGGTATTGAAGA 58.993 45.455 2.76 0.00 32.22 2.87
2406 2659 3.009723 AGGCAACACGATGGTATTGAAG 58.990 45.455 2.76 0.00 32.22 3.02
2407 2660 3.066291 AGGCAACACGATGGTATTGAA 57.934 42.857 2.76 0.00 32.22 2.69
2408 2661 2.779755 AGGCAACACGATGGTATTGA 57.220 45.000 2.76 0.00 32.22 2.57
2409 2662 4.126437 TGATAGGCAACACGATGGTATTG 58.874 43.478 0.00 0.00 41.41 1.90
2410 2663 4.415881 TGATAGGCAACACGATGGTATT 57.584 40.909 0.00 0.00 41.41 1.89
2411 2664 4.380531 CTTGATAGGCAACACGATGGTAT 58.619 43.478 0.00 0.00 41.41 2.73
2412 2665 3.792401 CTTGATAGGCAACACGATGGTA 58.208 45.455 0.00 0.00 41.41 3.25
2413 2666 2.632377 CTTGATAGGCAACACGATGGT 58.368 47.619 0.00 0.00 41.41 3.55
2414 2667 1.331756 GCTTGATAGGCAACACGATGG 59.668 52.381 0.00 0.00 41.41 3.51
2415 2668 2.009051 TGCTTGATAGGCAACACGATG 58.991 47.619 0.00 0.00 36.71 3.84
2416 2669 2.009774 GTGCTTGATAGGCAACACGAT 58.990 47.619 0.00 0.00 41.54 3.73
2417 2670 1.270571 TGTGCTTGATAGGCAACACGA 60.271 47.619 0.00 0.00 41.54 4.35
2418 2671 1.155889 TGTGCTTGATAGGCAACACG 58.844 50.000 0.00 0.00 41.54 4.49
2419 2672 2.351738 GGTTGTGCTTGATAGGCAACAC 60.352 50.000 0.00 0.00 41.54 3.32
2420 2673 1.885887 GGTTGTGCTTGATAGGCAACA 59.114 47.619 0.00 0.00 41.54 3.33
2421 2674 2.162408 GAGGTTGTGCTTGATAGGCAAC 59.838 50.000 0.00 0.00 41.54 4.17
2422 2675 2.040278 AGAGGTTGTGCTTGATAGGCAA 59.960 45.455 0.00 0.00 41.54 4.52
2423 2676 1.630369 AGAGGTTGTGCTTGATAGGCA 59.370 47.619 0.00 0.00 37.36 4.75
2424 2677 2.093235 AGAGAGGTTGTGCTTGATAGGC 60.093 50.000 0.00 0.00 0.00 3.93
2425 2678 3.902881 AGAGAGGTTGTGCTTGATAGG 57.097 47.619 0.00 0.00 0.00 2.57
2426 2679 4.187694 GGAAGAGAGGTTGTGCTTGATAG 58.812 47.826 0.00 0.00 0.00 2.08
2427 2680 3.055094 GGGAAGAGAGGTTGTGCTTGATA 60.055 47.826 0.00 0.00 0.00 2.15
2428 2681 2.290577 GGGAAGAGAGGTTGTGCTTGAT 60.291 50.000 0.00 0.00 0.00 2.57
2429 2682 1.072331 GGGAAGAGAGGTTGTGCTTGA 59.928 52.381 0.00 0.00 0.00 3.02
2430 2683 1.202806 TGGGAAGAGAGGTTGTGCTTG 60.203 52.381 0.00 0.00 0.00 4.01
2431 2684 1.140312 TGGGAAGAGAGGTTGTGCTT 58.860 50.000 0.00 0.00 0.00 3.91
2432 2685 1.072965 CTTGGGAAGAGAGGTTGTGCT 59.927 52.381 0.00 0.00 0.00 4.40
2433 2686 1.072331 TCTTGGGAAGAGAGGTTGTGC 59.928 52.381 0.00 0.00 32.71 4.57
2434 2687 2.370189 AGTCTTGGGAAGAGAGGTTGTG 59.630 50.000 0.00 0.00 38.41 3.33
2435 2688 2.695585 AGTCTTGGGAAGAGAGGTTGT 58.304 47.619 0.00 0.00 38.41 3.32
2436 2689 3.778954 AAGTCTTGGGAAGAGAGGTTG 57.221 47.619 0.00 0.00 38.41 3.77
2437 2690 3.459969 ACAAAGTCTTGGGAAGAGAGGTT 59.540 43.478 0.00 0.00 38.41 3.50
2438 2691 3.049344 ACAAAGTCTTGGGAAGAGAGGT 58.951 45.455 0.00 0.00 38.41 3.85
2439 2692 3.669536 GACAAAGTCTTGGGAAGAGAGG 58.330 50.000 0.00 0.00 38.41 3.69
2440 2693 3.321497 CGACAAAGTCTTGGGAAGAGAG 58.679 50.000 0.00 0.00 38.41 3.20
2441 2694 2.548067 GCGACAAAGTCTTGGGAAGAGA 60.548 50.000 0.00 0.00 38.41 3.10
2442 2695 1.801178 GCGACAAAGTCTTGGGAAGAG 59.199 52.381 0.00 0.00 38.41 2.85
2443 2696 1.542547 GGCGACAAAGTCTTGGGAAGA 60.543 52.381 0.00 0.00 36.82 2.87
2444 2697 0.875059 GGCGACAAAGTCTTGGGAAG 59.125 55.000 0.00 0.00 36.82 3.46
2445 2698 0.536460 GGGCGACAAAGTCTTGGGAA 60.536 55.000 0.00 0.00 36.82 3.97
2446 2699 1.072505 GGGCGACAAAGTCTTGGGA 59.927 57.895 0.00 0.00 36.82 4.37
2447 2700 0.955919 GAGGGCGACAAAGTCTTGGG 60.956 60.000 0.00 0.00 36.82 4.12
2448 2701 0.955919 GGAGGGCGACAAAGTCTTGG 60.956 60.000 0.00 0.00 36.82 3.61
2449 2702 0.035458 AGGAGGGCGACAAAGTCTTG 59.965 55.000 0.00 0.00 38.61 3.02
2450 2703 0.765510 AAGGAGGGCGACAAAGTCTT 59.234 50.000 0.00 0.00 0.00 3.01
2451 2704 0.035458 CAAGGAGGGCGACAAAGTCT 59.965 55.000 0.00 0.00 0.00 3.24
2452 2705 1.578206 GCAAGGAGGGCGACAAAGTC 61.578 60.000 0.00 0.00 0.00 3.01
2453 2706 1.600916 GCAAGGAGGGCGACAAAGT 60.601 57.895 0.00 0.00 0.00 2.66
2454 2707 3.267974 GCAAGGAGGGCGACAAAG 58.732 61.111 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.