Multiple sequence alignment - TraesCS2B01G219800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G219800 chr2B 100.000 4275 0 0 1 4275 210453067 210457341 0.000000e+00 7895.0
1 TraesCS2B01G219800 chr2B 87.302 63 5 3 3472 3533 93696012 93696072 7.670000e-08 69.4
2 TraesCS2B01G219800 chr2B 93.182 44 2 1 3479 3521 162520223 162520180 3.570000e-06 63.9
3 TraesCS2B01G219800 chr2A 88.525 2440 165 46 414 2790 149213269 149210882 0.000000e+00 2848.0
4 TraesCS2B01G219800 chr2A 93.172 703 23 12 2792 3480 149210717 149210026 0.000000e+00 1009.0
5 TraesCS2B01G219800 chr2A 89.107 661 34 9 3616 4275 149210024 149209401 0.000000e+00 787.0
6 TraesCS2B01G219800 chr2A 90.909 99 5 3 3533 3627 245942998 245943096 3.470000e-26 130.0
7 TraesCS2B01G219800 chr2D 91.540 1253 54 13 607 1813 152094161 152095407 0.000000e+00 1679.0
8 TraesCS2B01G219800 chr2D 94.306 1001 31 11 1802 2797 152095680 152096659 0.000000e+00 1509.0
9 TraesCS2B01G219800 chr2D 93.825 664 28 4 3614 4275 152097073 152097725 0.000000e+00 987.0
10 TraesCS2B01G219800 chr2D 96.359 412 7 3 3074 3481 152096667 152097074 0.000000e+00 671.0
11 TraesCS2B01G219800 chr2D 82.998 647 57 25 1 606 152093296 152093930 1.750000e-148 536.0
12 TraesCS2B01G219800 chr2D 90.909 55 2 3 3471 3523 620513501 620513554 2.130000e-08 71.3
13 TraesCS2B01G219800 chr4A 89.510 143 9 4 1873 2014 683500986 683500849 4.390000e-40 176.0
14 TraesCS2B01G219800 chr4A 89.011 91 8 2 3527 3615 664183229 664183319 1.260000e-20 111.0
15 TraesCS2B01G219800 chr3D 87.037 162 8 3 1865 2014 321885302 321885462 2.040000e-38 171.0
16 TraesCS2B01G219800 chr3D 89.706 68 4 3 3479 3545 548253407 548253342 2.740000e-12 84.2
17 TraesCS2B01G219800 chr3A 87.037 162 6 5 1865 2014 402084076 402083918 7.350000e-38 169.0
18 TraesCS2B01G219800 chr3B 85.185 162 11 5 1865 2014 397665357 397665197 2.060000e-33 154.0
19 TraesCS2B01G219800 chr3B 92.683 82 4 1 1935 2014 42700251 42700170 2.700000e-22 117.0
20 TraesCS2B01G219800 chr4D 85.065 154 10 6 1873 2014 476316816 476316664 1.240000e-30 145.0
21 TraesCS2B01G219800 chr4D 88.889 63 4 3 3472 3533 136489521 136489581 1.650000e-09 75.0
22 TraesCS2B01G219800 chr4B 85.065 154 10 5 1873 2014 600672160 600672008 1.240000e-30 145.0
23 TraesCS2B01G219800 chr4B 90.476 63 3 3 3475 3536 617405531 617405471 3.540000e-11 80.5
24 TraesCS2B01G219800 chr1B 90.909 99 6 2 3533 3628 345303721 345303819 3.470000e-26 130.0
25 TraesCS2B01G219800 chr1A 90.909 99 5 3 3533 3627 209495016 209495114 3.470000e-26 130.0
26 TraesCS2B01G219800 chr5A 90.000 90 5 4 3529 3616 211762977 211763064 3.490000e-21 113.0
27 TraesCS2B01G219800 chr5A 87.931 58 5 2 3480 3536 436098726 436098670 2.760000e-07 67.6
28 TraesCS2B01G219800 chr7A 89.888 89 5 3 3529 3615 24692850 24692936 1.260000e-20 111.0
29 TraesCS2B01G219800 chr7A 90.000 90 4 5 3529 3616 522923861 522923947 1.260000e-20 111.0
30 TraesCS2B01G219800 chr7A 94.643 56 1 2 3479 3533 103151079 103151133 7.620000e-13 86.1
31 TraesCS2B01G219800 chr6B 89.130 92 6 3 3529 3618 482473905 482473994 1.260000e-20 111.0
32 TraesCS2B01G219800 chr1D 88.764 89 6 3 3529 3615 437855291 437855377 5.850000e-19 106.0
33 TraesCS2B01G219800 chr1D 92.063 63 2 3 3480 3540 314336728 314336667 7.620000e-13 86.1
34 TraesCS2B01G219800 chr1D 89.583 48 3 2 3472 3518 467488181 467488227 4.620000e-05 60.2
35 TraesCS2B01G219800 chr7B 90.909 66 5 1 3472 3536 747368199 747368134 2.120000e-13 87.9
36 TraesCS2B01G219800 chr7D 94.643 56 1 2 3479 3533 55416970 55417024 7.620000e-13 86.1
37 TraesCS2B01G219800 chr7D 85.714 70 5 5 3472 3540 530767015 530766950 7.670000e-08 69.4
38 TraesCS2B01G219800 chr6D 91.935 62 3 2 3476 3536 63130837 63130777 7.620000e-13 86.1
39 TraesCS2B01G219800 chr5D 92.063 63 2 3 3479 3540 420372765 420372825 7.620000e-13 86.1
40 TraesCS2B01G219800 chrUn 92.593 54 2 2 3482 3533 96020777 96020724 4.580000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G219800 chr2B 210453067 210457341 4274 False 7895.0 7895 100.0000 1 4275 1 chr2B.!!$F2 4274
1 TraesCS2B01G219800 chr2A 149209401 149213269 3868 True 1548.0 2848 90.2680 414 4275 3 chr2A.!!$R1 3861
2 TraesCS2B01G219800 chr2D 152093296 152097725 4429 False 1076.4 1679 91.8056 1 4275 5 chr2D.!!$F2 4274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 1253 0.034089 CCACCCCATCCTTCCTGAAC 60.034 60.000 0.00 0.00 0.00 3.18 F
1069 1390 1.065701 CGTCCGATCCCCGATATCATC 59.934 57.143 3.12 0.00 41.76 2.92 F
1121 1442 1.337823 CGATCTATTTCCCCCGCGAAT 60.338 52.381 8.23 0.53 0.00 3.34 F
2107 2758 1.564818 TCATCGTCACCTCCCTAGTCT 59.435 52.381 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2524 2.041081 TGGTAAGGCTAGTGTTGGCATT 59.959 45.455 0.00 0.00 38.38 3.56 R
2652 3319 2.118683 CACAAGTGCACATGGAAAACG 58.881 47.619 24.49 0.00 0.00 3.60 R
2890 3722 3.540314 TGCACCAATTTGAACTTTGCT 57.460 38.095 0.00 0.00 0.00 3.91 R
3352 4193 0.110101 TTCGATTTCGTCACTCGCGA 60.110 50.000 9.26 9.26 40.80 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.771216 AGAATCCACATGCAAGTCCTTT 58.229 40.909 0.00 0.00 0.00 3.11
91 92 4.067896 CCAGTGTAGTCTTTGTTCTGCAT 58.932 43.478 0.00 0.00 0.00 3.96
95 96 4.515191 GTGTAGTCTTTGTTCTGCATCCAA 59.485 41.667 0.00 0.00 0.00 3.53
96 97 5.182001 GTGTAGTCTTTGTTCTGCATCCAAT 59.818 40.000 0.00 0.00 0.00 3.16
98 99 4.401022 AGTCTTTGTTCTGCATCCAATGA 58.599 39.130 0.00 0.00 0.00 2.57
117 118 2.706636 TGCGTCTTGAGCAAAGCTT 58.293 47.368 0.00 0.00 42.18 3.74
123 124 4.681483 GCGTCTTGAGCAAAGCTTATTTTT 59.319 37.500 0.00 0.00 39.88 1.94
126 127 6.450545 GTCTTGAGCAAAGCTTATTTTTCCT 58.549 36.000 0.00 0.00 39.88 3.36
127 128 6.584184 GTCTTGAGCAAAGCTTATTTTTCCTC 59.416 38.462 0.00 0.00 39.88 3.71
132 133 6.249192 AGCAAAGCTTATTTTTCCTCTAGGT 58.751 36.000 0.00 0.00 33.89 3.08
137 138 4.571176 GCTTATTTTTCCTCTAGGTCACCG 59.429 45.833 0.00 0.00 36.34 4.94
145 146 1.982395 CTAGGTCACCGCCTCACCA 60.982 63.158 0.00 0.00 39.94 4.17
152 153 2.270205 CCGCCTCACCAGAGCAAT 59.730 61.111 0.00 0.00 40.68 3.56
157 185 0.617413 CCTCACCAGAGCAATCCAGT 59.383 55.000 0.00 0.00 40.68 4.00
169 197 3.584848 AGCAATCCAGTAGTCAGGAAGTT 59.415 43.478 0.00 0.00 37.48 2.66
195 223 3.627395 TGTAAACCAGAAGATGCCGAT 57.373 42.857 0.00 0.00 0.00 4.18
199 227 4.965119 AAACCAGAAGATGCCGATAAAC 57.035 40.909 0.00 0.00 0.00 2.01
205 233 0.928229 AGATGCCGATAAACGCGAAC 59.072 50.000 15.93 0.00 41.07 3.95
207 235 0.650512 ATGCCGATAAACGCGAACTG 59.349 50.000 15.93 0.00 41.07 3.16
224 252 2.168496 ACTGGGTATATCGTCATCCCG 58.832 52.381 0.00 0.00 40.86 5.14
227 255 1.749634 GGGTATATCGTCATCCCGGAG 59.250 57.143 0.73 0.00 0.00 4.63
228 256 2.619849 GGGTATATCGTCATCCCGGAGA 60.620 54.545 0.73 0.00 0.00 3.71
229 257 3.087031 GGTATATCGTCATCCCGGAGAA 58.913 50.000 0.73 0.00 0.00 2.87
230 258 3.128938 GGTATATCGTCATCCCGGAGAAG 59.871 52.174 0.73 0.01 0.00 2.85
231 259 0.959553 TATCGTCATCCCGGAGAAGC 59.040 55.000 0.73 0.00 0.00 3.86
232 260 1.749334 ATCGTCATCCCGGAGAAGCC 61.749 60.000 0.73 0.00 0.00 4.35
266 294 4.595350 AGGGGCAGAAGATAATCCTTACTC 59.405 45.833 0.00 0.00 0.00 2.59
280 308 4.480115 TCCTTACTCTGACCAGAACAAGA 58.520 43.478 15.98 3.51 36.94 3.02
307 335 7.181845 AGAGGAAGACAAATCTCATAAGTTCCT 59.818 37.037 0.00 0.00 35.71 3.36
312 340 5.103000 ACAAATCTCATAAGTTCCTCGACG 58.897 41.667 0.00 0.00 0.00 5.12
340 368 0.174389 TCTGGCTGAGCTTCATCGAC 59.826 55.000 3.72 0.00 0.00 4.20
341 369 1.144565 CTGGCTGAGCTTCATCGACG 61.145 60.000 3.72 0.00 0.00 5.12
343 371 1.139734 GCTGAGCTTCATCGACGGA 59.860 57.895 0.00 0.00 0.00 4.69
344 372 0.869454 GCTGAGCTTCATCGACGGAG 60.869 60.000 0.00 0.00 0.00 4.63
345 373 0.735471 CTGAGCTTCATCGACGGAGA 59.265 55.000 0.00 0.00 0.00 3.71
346 374 1.336440 CTGAGCTTCATCGACGGAGAT 59.664 52.381 0.00 0.00 0.00 2.75
347 375 1.066152 TGAGCTTCATCGACGGAGATG 59.934 52.381 13.92 13.92 46.90 2.90
348 376 0.387202 AGCTTCATCGACGGAGATGG 59.613 55.000 18.11 7.90 45.88 3.51
349 377 0.598680 GCTTCATCGACGGAGATGGG 60.599 60.000 18.11 13.47 45.88 4.00
364 412 5.282510 GGAGATGGGATTATAACGCTATCG 58.717 45.833 0.00 0.00 42.43 2.92
365 413 4.683832 AGATGGGATTATAACGCTATCGC 58.316 43.478 0.00 0.00 39.84 4.58
378 426 1.537776 GCTATCGCTCTGCATGACACT 60.538 52.381 0.00 0.00 0.00 3.55
379 427 2.125685 CTATCGCTCTGCATGACACTG 58.874 52.381 0.00 0.00 0.00 3.66
380 428 0.248565 ATCGCTCTGCATGACACTGT 59.751 50.000 0.00 0.00 0.00 3.55
381 429 0.668401 TCGCTCTGCATGACACTGTG 60.668 55.000 6.19 6.19 0.00 3.66
382 430 0.668401 CGCTCTGCATGACACTGTGA 60.668 55.000 15.86 0.00 0.00 3.58
383 431 1.077123 GCTCTGCATGACACTGTGAG 58.923 55.000 15.86 0.00 0.00 3.51
384 432 1.077123 CTCTGCATGACACTGTGAGC 58.923 55.000 15.86 12.55 0.00 4.26
385 433 0.393820 TCTGCATGACACTGTGAGCA 59.606 50.000 15.86 16.06 0.00 4.26
400 448 6.425114 CACTGTGAGCAAACACTACTATCTTT 59.575 38.462 0.32 0.00 40.87 2.52
407 455 7.217200 AGCAAACACTACTATCTTTTGACTCA 58.783 34.615 0.00 0.00 30.23 3.41
408 456 7.171678 AGCAAACACTACTATCTTTTGACTCAC 59.828 37.037 0.00 0.00 30.23 3.51
412 460 6.213600 ACACTACTATCTTTTGACTCACCCAT 59.786 38.462 0.00 0.00 0.00 4.00
417 465 7.275920 ACTATCTTTTGACTCACCCATATCAC 58.724 38.462 0.00 0.00 0.00 3.06
428 476 2.092429 ACCCATATCACGCCAAGAATGT 60.092 45.455 0.00 0.00 0.00 2.71
438 486 3.188460 ACGCCAAGAATGTACATCAACAC 59.812 43.478 9.23 0.00 30.75 3.32
520 573 5.026038 TGAAAAACTCGTAGACCCTTTGA 57.974 39.130 0.00 0.00 0.00 2.69
525 578 3.149196 ACTCGTAGACCCTTTGACGTTA 58.851 45.455 0.00 0.00 36.69 3.18
560 613 6.488683 TCATTAAAACCAACTTTCGACAGGAT 59.511 34.615 3.23 0.00 0.00 3.24
622 905 3.940209 TTAGGCGTTTTCCTTCTACGA 57.060 42.857 0.00 0.00 37.47 3.43
673 961 2.623416 GGCTAAACCATGGAATAGCACC 59.377 50.000 33.78 22.91 41.93 5.01
706 994 3.136750 CTCCAGATCTCCCCAGCG 58.863 66.667 0.00 0.00 0.00 5.18
770 1058 6.348540 CGGAAGAAAACTGATTAACCTCCTTG 60.349 42.308 0.00 0.00 0.00 3.61
801 1089 3.695606 GCCTGCTGTCTCGTCCCA 61.696 66.667 0.00 0.00 0.00 4.37
932 1253 0.034089 CCACCCCATCCTTCCTGAAC 60.034 60.000 0.00 0.00 0.00 3.18
947 1268 3.387225 GAACCCAGACTAGGCCCGC 62.387 68.421 0.00 0.00 0.00 6.13
988 1309 3.474570 GGGCGTCTCCTGCTCCAT 61.475 66.667 0.00 0.00 34.39 3.41
990 1311 2.107953 GCGTCTCCTGCTCCATCC 59.892 66.667 0.00 0.00 0.00 3.51
991 1312 2.818132 CGTCTCCTGCTCCATCCC 59.182 66.667 0.00 0.00 0.00 3.85
1069 1390 1.065701 CGTCCGATCCCCGATATCATC 59.934 57.143 3.12 0.00 41.76 2.92
1112 1433 4.745125 TGCTGTTCGAATCGATCTATTTCC 59.255 41.667 6.06 0.00 35.23 3.13
1121 1442 1.337823 CGATCTATTTCCCCCGCGAAT 60.338 52.381 8.23 0.53 0.00 3.34
1147 1468 2.699954 TCAGAGCCCTTGACGAATTTC 58.300 47.619 0.00 0.00 0.00 2.17
1304 1644 5.452078 TTTGTTCTAAAGCTGGTTCATGG 57.548 39.130 0.00 0.00 0.00 3.66
1316 1656 3.153919 TGGTTCATGGTTTCTGTTAGGC 58.846 45.455 0.00 0.00 0.00 3.93
1336 1676 3.539604 GCATGCTCAGTTGAGGTCTTAT 58.460 45.455 11.37 0.00 42.29 1.73
1406 1760 6.867799 CATGCGTTGCAGATGTTTTATTTA 57.132 33.333 0.00 0.00 43.65 1.40
1417 1771 7.593644 GCAGATGTTTTATTTAACGTTCCAAGT 59.406 33.333 2.82 0.00 0.00 3.16
1433 1787 4.832248 TCCAAGTCATATTTCGTGCTTCT 58.168 39.130 0.00 0.00 0.00 2.85
1488 1842 3.569194 TTTAGTTCTTGGTGGCTGTGA 57.431 42.857 0.00 0.00 0.00 3.58
1516 1870 6.697892 CCTGTAGGAGTTCGTTTAAGATGATC 59.302 42.308 0.00 0.00 37.39 2.92
1522 1876 9.535878 AGGAGTTCGTTTAAGATGATCTTATTC 57.464 33.333 15.04 10.29 38.60 1.75
1579 1933 8.981659 TGTCAATTAGATTAGAACCATCTCAGA 58.018 33.333 0.00 0.00 37.10 3.27
1619 1973 3.977427 TGTATGAGTCGACACCATATGC 58.023 45.455 23.95 16.49 0.00 3.14
1716 2072 8.562892 CATAGTTGGTCTGATGTTAATGGATTC 58.437 37.037 0.00 0.00 0.00 2.52
1717 2073 6.484288 AGTTGGTCTGATGTTAATGGATTCA 58.516 36.000 0.00 0.00 0.00 2.57
1751 2107 6.534793 GGAAATGCAATGTATAACCTGGTTTG 59.465 38.462 18.58 9.73 0.00 2.93
1883 2524 7.232188 TGTCTTATTATGGGTGTGTTTGGTTA 58.768 34.615 0.00 0.00 0.00 2.85
1889 2538 1.689273 GGGTGTGTTTGGTTAATGCCA 59.311 47.619 0.00 0.00 36.62 4.92
2107 2758 1.564818 TCATCGTCACCTCCCTAGTCT 59.435 52.381 0.00 0.00 0.00 3.24
2301 2968 5.626142 TCATTACTGCTACTTTTGTTCCCA 58.374 37.500 0.00 0.00 0.00 4.37
2427 3094 5.717119 GAACTGCCATGTTCTGATCAATTT 58.283 37.500 0.00 0.00 42.03 1.82
2454 3121 7.596749 TGTTCTAGTTAATAAGCTGTTGAGC 57.403 36.000 0.00 0.00 46.64 4.26
2622 3289 8.429237 TGTGGAATCCTTGGTTATTTATGTTT 57.571 30.769 0.00 0.00 0.00 2.83
2623 3290 8.875168 TGTGGAATCCTTGGTTATTTATGTTTT 58.125 29.630 0.00 0.00 0.00 2.43
2729 3396 9.301897 TGTACATCTATGTGTGCTAGAGAATAT 57.698 33.333 5.85 0.00 41.89 1.28
2738 3405 5.810587 GTGTGCTAGAGAATATTCCGTTGAA 59.189 40.000 11.92 0.00 34.33 2.69
2755 3422 8.415192 TCCGTTGAATCAATTACTGTGTATAC 57.585 34.615 0.00 0.00 0.00 1.47
2761 3428 9.030301 TGAATCAATTACTGTGTATACATGACG 57.970 33.333 9.18 0.96 35.97 4.35
2888 3720 3.874392 AAGCCTGCAATTGAACATACC 57.126 42.857 10.34 0.00 0.00 2.73
2889 3721 2.806434 AGCCTGCAATTGAACATACCA 58.194 42.857 10.34 0.00 0.00 3.25
2890 3722 3.164268 AGCCTGCAATTGAACATACCAA 58.836 40.909 10.34 0.00 0.00 3.67
2891 3723 3.194116 AGCCTGCAATTGAACATACCAAG 59.806 43.478 10.34 0.00 0.00 3.61
2892 3724 3.514645 CCTGCAATTGAACATACCAAGC 58.485 45.455 10.34 0.00 0.00 4.01
2909 3741 3.002553 CCAAGCAAAGTTCAAATTGGTGC 59.997 43.478 0.00 0.00 37.34 5.01
3229 4067 5.396484 CATGTTGTCCTATTTGCTCTGTTG 58.604 41.667 0.00 0.00 0.00 3.33
3341 4179 6.876789 TGTACCATGTGTTGTATTTAGTCTGG 59.123 38.462 0.00 0.00 0.00 3.86
3351 4192 8.402472 TGTTGTATTTAGTCTGGAAAAAGTGTG 58.598 33.333 0.00 0.00 0.00 3.82
3352 4193 8.403236 GTTGTATTTAGTCTGGAAAAAGTGTGT 58.597 33.333 0.00 0.00 0.00 3.72
3355 4196 1.940613 AGTCTGGAAAAAGTGTGTCGC 59.059 47.619 0.00 0.00 0.00 5.19
3357 4198 0.934496 CTGGAAAAAGTGTGTCGCGA 59.066 50.000 3.71 3.71 0.00 5.87
3358 4199 0.934496 TGGAAAAAGTGTGTCGCGAG 59.066 50.000 10.24 0.00 0.00 5.03
3359 4200 0.935196 GGAAAAAGTGTGTCGCGAGT 59.065 50.000 10.24 0.00 0.00 4.18
3360 4201 1.332904 GGAAAAAGTGTGTCGCGAGTG 60.333 52.381 10.24 0.00 0.00 3.51
3388 4229 1.134946 CGAATGGAAAATGGGACTGGC 59.865 52.381 0.00 0.00 0.00 4.85
3447 4292 3.072915 TCCAGCTTCCTGTCATGAAAGAA 59.927 43.478 14.93 8.56 37.38 2.52
3481 4326 5.122396 CACAACTTCTGGGCTTGTAAGATAC 59.878 44.000 0.00 0.00 0.00 2.24
3482 4327 5.013183 ACAACTTCTGGGCTTGTAAGATACT 59.987 40.000 0.00 0.00 0.00 2.12
3483 4328 5.763876 ACTTCTGGGCTTGTAAGATACTT 57.236 39.130 0.00 0.00 0.00 2.24
3484 4329 5.735766 ACTTCTGGGCTTGTAAGATACTTC 58.264 41.667 0.00 0.00 0.00 3.01
3485 4330 4.755266 TCTGGGCTTGTAAGATACTTCC 57.245 45.455 0.00 0.00 0.00 3.46
3486 4331 4.362677 TCTGGGCTTGTAAGATACTTCCT 58.637 43.478 0.00 0.00 0.00 3.36
3487 4332 4.406003 TCTGGGCTTGTAAGATACTTCCTC 59.594 45.833 0.00 0.00 0.00 3.71
3488 4333 3.454812 TGGGCTTGTAAGATACTTCCTCC 59.545 47.826 0.00 0.00 0.00 4.30
3489 4334 3.492829 GGGCTTGTAAGATACTTCCTCCG 60.493 52.174 0.00 0.00 0.00 4.63
3490 4335 3.132467 GGCTTGTAAGATACTTCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
3491 4336 4.382793 GGCTTGTAAGATACTTCCTCCGTT 60.383 45.833 0.00 0.00 0.00 4.44
3492 4337 5.176592 GCTTGTAAGATACTTCCTCCGTTT 58.823 41.667 0.00 0.00 0.00 3.60
3493 4338 5.291371 GCTTGTAAGATACTTCCTCCGTTTC 59.709 44.000 0.00 0.00 0.00 2.78
3494 4339 6.600882 TTGTAAGATACTTCCTCCGTTTCT 57.399 37.500 0.00 0.00 0.00 2.52
3495 4340 7.630082 GCTTGTAAGATACTTCCTCCGTTTCTA 60.630 40.741 0.00 0.00 0.00 2.10
3496 4341 7.707624 TGTAAGATACTTCCTCCGTTTCTAA 57.292 36.000 0.00 0.00 0.00 2.10
3497 4342 8.125978 TGTAAGATACTTCCTCCGTTTCTAAA 57.874 34.615 0.00 0.00 0.00 1.85
3498 4343 8.755977 TGTAAGATACTTCCTCCGTTTCTAAAT 58.244 33.333 0.00 0.00 0.00 1.40
3506 4351 8.979534 ACTTCCTCCGTTTCTAAATATAAGTCT 58.020 33.333 0.00 0.00 0.00 3.24
3507 4352 9.819267 CTTCCTCCGTTTCTAAATATAAGTCTT 57.181 33.333 0.00 0.00 0.00 3.01
3547 4392 8.558973 AAGAGACTACACACTATAAACTACGT 57.441 34.615 0.00 0.00 0.00 3.57
3548 4393 8.195617 AGAGACTACACACTATAAACTACGTC 57.804 38.462 0.00 0.00 0.00 4.34
3549 4394 8.040132 AGAGACTACACACTATAAACTACGTCT 58.960 37.037 0.00 0.00 0.00 4.18
3550 4395 9.307121 GAGACTACACACTATAAACTACGTCTA 57.693 37.037 0.00 0.00 0.00 2.59
3551 4396 9.829507 AGACTACACACTATAAACTACGTCTAT 57.170 33.333 0.00 0.00 0.00 1.98
3576 4421 5.723672 ACATTCGTATGTAGTCCATAGGG 57.276 43.478 5.81 0.00 43.12 3.53
3577 4422 5.391256 ACATTCGTATGTAGTCCATAGGGA 58.609 41.667 5.81 0.00 43.12 4.20
3578 4423 5.836898 ACATTCGTATGTAGTCCATAGGGAA 59.163 40.000 5.81 0.00 43.40 3.97
3579 4424 6.325545 ACATTCGTATGTAGTCCATAGGGAAA 59.674 38.462 5.81 0.00 43.40 3.13
3580 4425 7.016268 ACATTCGTATGTAGTCCATAGGGAAAT 59.984 37.037 5.81 0.00 43.40 2.17
3592 4437 7.604657 TCCATAGGGAAATCTCTAGAAAGAC 57.395 40.000 0.00 0.00 41.32 3.01
3593 4438 7.366226 TCCATAGGGAAATCTCTAGAAAGACT 58.634 38.462 0.00 0.00 41.32 3.24
3594 4439 7.846823 TCCATAGGGAAATCTCTAGAAAGACTT 59.153 37.037 0.00 0.00 41.32 3.01
3595 4440 7.930865 CCATAGGGAAATCTCTAGAAAGACTTG 59.069 40.741 0.00 0.00 35.59 3.16
3596 4441 6.943899 AGGGAAATCTCTAGAAAGACTTGT 57.056 37.500 0.00 0.00 0.00 3.16
3597 4442 9.716556 ATAGGGAAATCTCTAGAAAGACTTGTA 57.283 33.333 0.00 0.00 0.00 2.41
3598 4443 8.616799 AGGGAAATCTCTAGAAAGACTTGTAT 57.383 34.615 0.00 0.00 0.00 2.29
3599 4444 9.052365 AGGGAAATCTCTAGAAAGACTTGTATT 57.948 33.333 0.00 0.00 0.00 1.89
3600 4445 9.674068 GGGAAATCTCTAGAAAGACTTGTATTT 57.326 33.333 0.00 0.00 0.00 1.40
3609 4454 9.372369 CTAGAAAGACTTGTATTTAGGAACAGG 57.628 37.037 0.00 0.00 0.00 4.00
3610 4455 7.168905 AGAAAGACTTGTATTTAGGAACAGGG 58.831 38.462 0.00 0.00 0.00 4.45
3611 4456 6.697641 AAGACTTGTATTTAGGAACAGGGA 57.302 37.500 0.00 0.00 0.00 4.20
3612 4457 6.301169 AGACTTGTATTTAGGAACAGGGAG 57.699 41.667 0.00 0.00 0.00 4.30
3613 4458 5.785940 AGACTTGTATTTAGGAACAGGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
3614 4459 6.958192 AGACTTGTATTTAGGAACAGGGAGTA 59.042 38.462 0.00 0.00 0.00 2.59
3631 4476 6.006449 AGGGAGTATATTTCATGCATGAACC 58.994 40.000 35.75 29.36 45.63 3.62
3698 4543 8.946085 GCATCCGGTATCATAATTTGATCTTTA 58.054 33.333 0.00 0.00 44.13 1.85
3760 4609 1.185618 AGTAAGACGCTGGGCAGTCA 61.186 55.000 13.40 0.00 35.68 3.41
3769 4618 0.250640 CTGGGCAGTCAAGAACAGCT 60.251 55.000 0.00 0.00 40.10 4.24
3918 4774 4.040952 AGTGCTCCTCATCGCCTATATTTT 59.959 41.667 0.00 0.00 0.00 1.82
3923 4779 3.679980 CCTCATCGCCTATATTTTGACGG 59.320 47.826 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.202357 TGGATGCAGAACAAAGACTACACT 60.202 41.667 0.00 0.00 0.00 3.55
91 92 1.338960 TGCTCAAGACGCATCATTGGA 60.339 47.619 0.00 0.00 31.40 3.53
95 96 1.131883 GCTTTGCTCAAGACGCATCAT 59.868 47.619 0.79 0.00 37.22 2.45
96 97 0.518636 GCTTTGCTCAAGACGCATCA 59.481 50.000 0.79 0.00 37.22 3.07
98 99 1.242076 AAGCTTTGCTCAAGACGCAT 58.758 45.000 0.00 0.00 38.25 4.73
102 103 6.450545 AGGAAAAATAAGCTTTGCTCAAGAC 58.549 36.000 3.20 0.00 38.25 3.01
103 104 6.655078 AGGAAAAATAAGCTTTGCTCAAGA 57.345 33.333 3.20 0.00 38.25 3.02
117 118 3.118519 GGCGGTGACCTAGAGGAAAAATA 60.119 47.826 1.60 0.00 38.94 1.40
123 124 1.076923 GAGGCGGTGACCTAGAGGA 60.077 63.158 1.60 0.00 41.32 3.71
126 127 1.681327 GGTGAGGCGGTGACCTAGA 60.681 63.158 0.00 0.00 41.32 2.43
127 128 1.949847 CTGGTGAGGCGGTGACCTAG 61.950 65.000 0.00 0.00 41.32 3.02
132 133 3.695606 GCTCTGGTGAGGCGGTGA 61.696 66.667 0.00 0.00 40.53 4.02
137 138 0.747283 CTGGATTGCTCTGGTGAGGC 60.747 60.000 0.00 0.00 40.53 4.70
145 146 3.107402 TCCTGACTACTGGATTGCTCT 57.893 47.619 0.00 0.00 38.81 4.09
152 153 4.851843 TCGATAACTTCCTGACTACTGGA 58.148 43.478 0.00 0.00 41.27 3.86
157 185 7.123098 TGGTTTACATCGATAACTTCCTGACTA 59.877 37.037 0.00 0.00 0.00 2.59
169 197 5.297547 GGCATCTTCTGGTTTACATCGATA 58.702 41.667 0.00 0.00 0.00 2.92
195 223 3.066621 ACGATATACCCAGTTCGCGTTTA 59.933 43.478 5.77 0.00 35.08 2.01
199 227 1.002142 TGACGATATACCCAGTTCGCG 60.002 52.381 0.00 0.00 35.08 5.87
205 233 1.476891 CCGGGATGACGATATACCCAG 59.523 57.143 0.00 0.00 40.45 4.45
207 235 1.749634 CTCCGGGATGACGATATACCC 59.250 57.143 0.00 0.00 37.42 3.69
210 238 2.753452 GCTTCTCCGGGATGACGATATA 59.247 50.000 0.00 0.00 35.47 0.86
224 252 2.747855 CTTGGTGCCGGCTTCTCC 60.748 66.667 29.70 22.85 0.00 3.71
227 255 2.335712 CCTTCTTGGTGCCGGCTTC 61.336 63.158 29.70 19.99 0.00 3.86
228 256 2.282462 CCTTCTTGGTGCCGGCTT 60.282 61.111 29.70 0.00 0.00 4.35
229 257 4.351054 CCCTTCTTGGTGCCGGCT 62.351 66.667 29.70 0.00 0.00 5.52
232 260 4.659172 TGCCCCTTCTTGGTGCCG 62.659 66.667 0.00 0.00 0.00 5.69
233 261 2.677875 CTGCCCCTTCTTGGTGCC 60.678 66.667 0.00 0.00 0.00 5.01
234 262 1.228552 TTCTGCCCCTTCTTGGTGC 60.229 57.895 0.00 0.00 0.00 5.01
250 278 7.589958 TCTGGTCAGAGTAAGGATTATCTTC 57.410 40.000 0.00 0.00 32.82 2.87
266 294 4.039730 TCTTCCTCTTCTTGTTCTGGTCAG 59.960 45.833 0.00 0.00 0.00 3.51
280 308 7.826744 GGAACTTATGAGATTTGTCTTCCTCTT 59.173 37.037 0.00 0.00 0.00 2.85
312 340 0.031449 GCTCAGCCAGATACGACTCC 59.969 60.000 0.00 0.00 0.00 3.85
325 353 0.869454 CTCCGTCGATGAAGCTCAGC 60.869 60.000 6.11 0.00 0.00 4.26
340 368 3.594603 AGCGTTATAATCCCATCTCCG 57.405 47.619 0.00 0.00 0.00 4.63
341 369 5.282510 CGATAGCGTTATAATCCCATCTCC 58.717 45.833 0.00 0.00 0.00 3.71
364 412 1.077123 CTCACAGTGTCATGCAGAGC 58.923 55.000 0.00 0.00 0.00 4.09
365 413 1.077123 GCTCACAGTGTCATGCAGAG 58.923 55.000 0.00 0.00 0.00 3.35
378 426 6.989759 TCAAAAGATAGTAGTGTTTGCTCACA 59.010 34.615 9.15 0.00 40.37 3.58
379 427 7.171678 AGTCAAAAGATAGTAGTGTTTGCTCAC 59.828 37.037 0.00 0.00 38.46 3.51
380 428 7.217200 AGTCAAAAGATAGTAGTGTTTGCTCA 58.783 34.615 0.00 0.00 0.00 4.26
381 429 7.385205 TGAGTCAAAAGATAGTAGTGTTTGCTC 59.615 37.037 0.00 0.00 35.40 4.26
382 430 7.171678 GTGAGTCAAAAGATAGTAGTGTTTGCT 59.828 37.037 0.00 0.00 0.00 3.91
383 431 7.291567 GTGAGTCAAAAGATAGTAGTGTTTGC 58.708 38.462 0.00 0.00 0.00 3.68
384 432 7.095187 GGGTGAGTCAAAAGATAGTAGTGTTTG 60.095 40.741 0.00 0.00 0.00 2.93
385 433 6.935208 GGGTGAGTCAAAAGATAGTAGTGTTT 59.065 38.462 0.00 0.00 0.00 2.83
400 448 1.134521 GGCGTGATATGGGTGAGTCAA 60.135 52.381 0.00 0.00 0.00 3.18
407 455 2.092429 ACATTCTTGGCGTGATATGGGT 60.092 45.455 0.00 0.00 0.00 4.51
408 456 2.575532 ACATTCTTGGCGTGATATGGG 58.424 47.619 0.00 0.00 0.00 4.00
412 460 5.017294 TGATGTACATTCTTGGCGTGATA 57.983 39.130 10.30 0.00 0.00 2.15
417 465 3.188254 TGTGTTGATGTACATTCTTGGCG 59.812 43.478 10.30 0.00 0.00 5.69
448 496 6.455113 CGTTGATTGAAATAATCGTTCCTCGT 60.455 38.462 0.00 0.00 40.80 4.18
520 573 9.661563 TGGTTTTAATGAGATATGTTCTAACGT 57.338 29.630 0.00 0.00 33.74 3.99
622 905 4.725490 TCCTCCGTTTTCCTTTCATCTTT 58.275 39.130 0.00 0.00 0.00 2.52
673 961 1.450312 GAGCGTCCAATGAGGGGTG 60.450 63.158 0.00 0.00 38.24 4.61
706 994 4.838152 TCAGCCGCTTGATCCGCC 62.838 66.667 0.00 0.00 0.00 6.13
770 1058 3.637273 AGGCTGACGGGGTTGGAC 61.637 66.667 0.00 0.00 0.00 4.02
801 1089 1.227812 AGGGGAGGGGATGAGATCAAT 59.772 52.381 0.00 0.00 0.00 2.57
915 1212 1.214992 GGGTTCAGGAAGGATGGGGT 61.215 60.000 0.00 0.00 0.00 4.95
924 1245 1.276622 GCCTAGTCTGGGTTCAGGAA 58.723 55.000 3.91 0.00 41.23 3.36
973 1294 2.107953 GGATGGAGCAGGAGACGC 59.892 66.667 0.00 0.00 0.00 5.19
997 1318 1.331399 TACATCGGGTTGGCCATCGA 61.331 55.000 22.45 22.45 36.17 3.59
1069 1390 3.451894 GGGTGCGAATTGGGCCAG 61.452 66.667 6.23 0.00 0.00 4.85
1112 1433 1.933853 CTCTGAACTAAATTCGCGGGG 59.066 52.381 6.13 0.00 40.56 5.73
1121 1442 2.631062 TCGTCAAGGGCTCTGAACTAAA 59.369 45.455 0.00 0.00 0.00 1.85
1304 1644 3.077359 ACTGAGCATGCCTAACAGAAAC 58.923 45.455 26.51 6.14 33.53 2.78
1316 1656 5.525378 GGTAATAAGACCTCAACTGAGCATG 59.475 44.000 0.89 0.00 40.75 4.06
1336 1676 5.670149 TTCTAACGTCAAAATTGCGGTAA 57.330 34.783 12.21 0.00 32.58 2.85
1404 1758 6.619018 GCACGAAATATGACTTGGAACGTTAA 60.619 38.462 0.00 0.00 0.00 2.01
1406 1760 4.378046 GCACGAAATATGACTTGGAACGTT 60.378 41.667 0.00 0.00 0.00 3.99
1459 1813 5.827797 GCCACCAAGAACTAAATCATGGATA 59.172 40.000 5.65 0.00 39.90 2.59
1488 1842 1.349067 AAACGAACTCCTACAGGCCT 58.651 50.000 0.00 0.00 34.44 5.19
1497 1851 8.480853 CGAATAAGATCATCTTAAACGAACTCC 58.519 37.037 21.64 3.28 41.72 3.85
1516 1870 9.543018 GTTCATCTTGGTTTAAAGACGAATAAG 57.457 33.333 0.00 0.00 39.66 1.73
1522 1876 5.389516 CCGAGTTCATCTTGGTTTAAAGACG 60.390 44.000 0.00 0.00 41.62 4.18
1579 1933 8.190326 TCATACAATCAATCTCCCGTACTAAT 57.810 34.615 0.00 0.00 0.00 1.73
1583 1937 5.844004 ACTCATACAATCAATCTCCCGTAC 58.156 41.667 0.00 0.00 0.00 3.67
1716 2072 5.075858 ACATTGCATTTCCATACAACCTG 57.924 39.130 0.00 0.00 0.00 4.00
1717 2073 8.413229 GTTATACATTGCATTTCCATACAACCT 58.587 33.333 0.00 0.00 0.00 3.50
1751 2107 9.668497 AGACTTAAAGTGGGTATGAACTTAATC 57.332 33.333 0.00 0.00 35.60 1.75
1883 2524 2.041081 TGGTAAGGCTAGTGTTGGCATT 59.959 45.455 0.00 0.00 38.38 3.56
1889 2538 4.522789 CCAACATTTGGTAAGGCTAGTGTT 59.477 41.667 0.00 0.00 45.93 3.32
2128 2779 2.957402 TGAGCATCCCACAAGAAGTT 57.043 45.000 0.00 0.00 0.00 2.66
2209 2876 2.235891 AGGCCTAAAACCAGAAAACCG 58.764 47.619 1.29 0.00 0.00 4.44
2370 3037 8.296713 TCAAAGTACTAAATCCATTGCTTGTTC 58.703 33.333 0.00 0.00 0.00 3.18
2462 3129 9.352784 CAACAAATAAGTTTCTGAAGTGTGAAA 57.647 29.630 0.00 0.00 0.00 2.69
2469 3136 8.523464 CGTCAAACAACAAATAAGTTTCTGAAG 58.477 33.333 0.00 0.00 33.54 3.02
2652 3319 2.118683 CACAAGTGCACATGGAAAACG 58.881 47.619 24.49 0.00 0.00 3.60
2729 3396 7.915293 ATACACAGTAATTGATTCAACGGAA 57.085 32.000 0.15 0.00 37.45 4.30
2738 3405 9.678941 CTACGTCATGTATACACAGTAATTGAT 57.321 33.333 7.96 0.00 38.30 2.57
2888 3720 3.622163 TGCACCAATTTGAACTTTGCTTG 59.378 39.130 0.00 0.00 0.00 4.01
2889 3721 3.871485 TGCACCAATTTGAACTTTGCTT 58.129 36.364 0.00 0.00 0.00 3.91
2890 3722 3.540314 TGCACCAATTTGAACTTTGCT 57.460 38.095 0.00 0.00 0.00 3.91
2891 3723 7.775397 ATATATGCACCAATTTGAACTTTGC 57.225 32.000 0.00 0.00 0.00 3.68
2892 3724 9.153721 ACAATATATGCACCAATTTGAACTTTG 57.846 29.630 0.00 0.00 0.00 2.77
2963 3795 9.868277 CATAAAGTAATTGTATCCCTTTTGCAA 57.132 29.630 0.00 0.00 0.00 4.08
3038 3872 9.803315 ACCATTGTTAAGAAAGAGAAAAAGTTC 57.197 29.630 0.00 0.00 0.00 3.01
3047 3881 9.846248 CCAAGAATAACCATTGTTAAGAAAGAG 57.154 33.333 0.00 0.00 40.21 2.85
3049 3883 8.306761 AGCCAAGAATAACCATTGTTAAGAAAG 58.693 33.333 0.00 0.00 40.21 2.62
3051 3885 7.232534 ACAGCCAAGAATAACCATTGTTAAGAA 59.767 33.333 0.00 0.00 40.21 2.52
3053 3887 6.808212 CACAGCCAAGAATAACCATTGTTAAG 59.192 38.462 0.00 0.00 40.21 1.85
3055 3889 5.336372 GCACAGCCAAGAATAACCATTGTTA 60.336 40.000 0.00 0.00 41.03 2.41
3229 4067 7.196331 ACAAAAGATAGACAACAAAGAAGCAC 58.804 34.615 0.00 0.00 0.00 4.40
3341 4179 1.591158 TCACTCGCGACACACTTTTTC 59.409 47.619 3.71 0.00 0.00 2.29
3351 4192 0.791983 TCGATTTCGTCACTCGCGAC 60.792 55.000 3.71 0.00 38.14 5.19
3352 4193 0.110101 TTCGATTTCGTCACTCGCGA 60.110 50.000 9.26 9.26 40.80 5.87
3355 4196 2.526077 TCCATTCGATTTCGTCACTCG 58.474 47.619 0.00 0.00 40.80 4.18
3357 4198 5.391950 CCATTTTCCATTCGATTTCGTCACT 60.392 40.000 0.00 0.00 40.80 3.41
3358 4199 4.793216 CCATTTTCCATTCGATTTCGTCAC 59.207 41.667 0.00 0.00 40.80 3.67
3359 4200 4.142491 CCCATTTTCCATTCGATTTCGTCA 60.142 41.667 0.00 0.00 40.80 4.35
3360 4201 4.095782 TCCCATTTTCCATTCGATTTCGTC 59.904 41.667 0.00 0.00 40.80 4.20
3388 4229 5.530915 TCTCAAGTCAAACCATGTAAACAGG 59.469 40.000 0.00 0.00 0.00 4.00
3447 4292 3.891366 CCCAGAAGTTGTGAAATGGTCTT 59.109 43.478 0.68 0.00 0.00 3.01
3481 4326 9.819267 AAGACTTATATTTAGAAACGGAGGAAG 57.181 33.333 0.00 0.00 0.00 3.46
3521 4366 9.658799 ACGTAGTTTATAGTGTGTAGTCTCTTA 57.341 33.333 0.00 0.00 37.78 2.10
3522 4367 8.558973 ACGTAGTTTATAGTGTGTAGTCTCTT 57.441 34.615 0.00 0.00 37.78 2.85
3544 4389 8.877779 GGACTACATACGAATGTATATAGACGT 58.122 37.037 7.52 0.00 45.33 4.34
3545 4390 8.876790 TGGACTACATACGAATGTATATAGACG 58.123 37.037 7.52 0.00 45.33 4.18
3550 4395 9.132923 CCCTATGGACTACATACGAATGTATAT 57.867 37.037 0.00 0.00 45.33 0.86
3551 4396 8.330993 TCCCTATGGACTACATACGAATGTATA 58.669 37.037 0.00 0.00 40.50 1.47
3552 4397 7.179966 TCCCTATGGACTACATACGAATGTAT 58.820 38.462 0.00 0.00 40.50 2.29
3553 4398 6.545567 TCCCTATGGACTACATACGAATGTA 58.454 40.000 0.00 0.00 40.45 2.29
3554 4399 5.391256 TCCCTATGGACTACATACGAATGT 58.609 41.667 0.00 0.00 41.81 2.71
3555 4400 5.977489 TCCCTATGGACTACATACGAATG 57.023 43.478 0.00 0.00 41.03 2.67
3556 4401 6.989155 TTTCCCTATGGACTACATACGAAT 57.011 37.500 0.00 0.00 41.57 3.34
3557 4402 6.781014 AGATTTCCCTATGGACTACATACGAA 59.219 38.462 0.00 0.00 41.57 3.85
3558 4403 6.312529 AGATTTCCCTATGGACTACATACGA 58.687 40.000 0.00 0.00 41.57 3.43
3559 4404 6.434652 AGAGATTTCCCTATGGACTACATACG 59.565 42.308 0.00 0.00 41.57 3.06
3560 4405 7.784470 AGAGATTTCCCTATGGACTACATAC 57.216 40.000 0.00 0.00 41.57 2.39
3561 4406 8.901841 TCTAGAGATTTCCCTATGGACTACATA 58.098 37.037 0.00 0.00 41.57 2.29
3562 4407 7.770662 TCTAGAGATTTCCCTATGGACTACAT 58.229 38.462 0.00 0.00 41.57 2.29
3563 4408 7.162973 TCTAGAGATTTCCCTATGGACTACA 57.837 40.000 0.00 0.00 41.57 2.74
3564 4409 8.480133 TTTCTAGAGATTTCCCTATGGACTAC 57.520 38.462 0.00 0.00 41.57 2.73
3565 4410 8.511969 TCTTTCTAGAGATTTCCCTATGGACTA 58.488 37.037 0.00 0.00 41.57 2.59
3566 4411 7.289084 GTCTTTCTAGAGATTTCCCTATGGACT 59.711 40.741 0.00 0.00 41.57 3.85
3567 4412 7.289084 AGTCTTTCTAGAGATTTCCCTATGGAC 59.711 40.741 0.00 0.00 41.57 4.02
3568 4413 7.366226 AGTCTTTCTAGAGATTTCCCTATGGA 58.634 38.462 0.00 0.00 39.54 3.41
3569 4414 7.610580 AGTCTTTCTAGAGATTTCCCTATGG 57.389 40.000 0.00 0.00 0.00 2.74
3570 4415 8.482128 ACAAGTCTTTCTAGAGATTTCCCTATG 58.518 37.037 0.00 0.00 0.00 2.23
3571 4416 8.616799 ACAAGTCTTTCTAGAGATTTCCCTAT 57.383 34.615 0.00 0.00 0.00 2.57
3572 4417 9.716556 ATACAAGTCTTTCTAGAGATTTCCCTA 57.283 33.333 0.00 0.00 0.00 3.53
3573 4418 6.943899 ACAAGTCTTTCTAGAGATTTCCCT 57.056 37.500 0.00 0.00 0.00 4.20
3574 4419 9.674068 AAATACAAGTCTTTCTAGAGATTTCCC 57.326 33.333 0.00 0.00 0.00 3.97
3583 4428 9.372369 CCTGTTCCTAAATACAAGTCTTTCTAG 57.628 37.037 0.00 0.00 0.00 2.43
3584 4429 8.319146 CCCTGTTCCTAAATACAAGTCTTTCTA 58.681 37.037 0.00 0.00 0.00 2.10
3585 4430 7.017254 TCCCTGTTCCTAAATACAAGTCTTTCT 59.983 37.037 0.00 0.00 0.00 2.52
3586 4431 7.166167 TCCCTGTTCCTAAATACAAGTCTTTC 58.834 38.462 0.00 0.00 0.00 2.62
3587 4432 7.086685 TCCCTGTTCCTAAATACAAGTCTTT 57.913 36.000 0.00 0.00 0.00 2.52
3588 4433 6.272558 ACTCCCTGTTCCTAAATACAAGTCTT 59.727 38.462 0.00 0.00 0.00 3.01
3589 4434 5.785940 ACTCCCTGTTCCTAAATACAAGTCT 59.214 40.000 0.00 0.00 0.00 3.24
3590 4435 6.051179 ACTCCCTGTTCCTAAATACAAGTC 57.949 41.667 0.00 0.00 0.00 3.01
3591 4436 7.750947 ATACTCCCTGTTCCTAAATACAAGT 57.249 36.000 0.00 0.00 0.00 3.16
3597 4442 9.799106 CATGAAATATACTCCCTGTTCCTAAAT 57.201 33.333 0.00 0.00 0.00 1.40
3598 4443 7.719633 GCATGAAATATACTCCCTGTTCCTAAA 59.280 37.037 0.00 0.00 0.00 1.85
3599 4444 7.147391 TGCATGAAATATACTCCCTGTTCCTAA 60.147 37.037 0.00 0.00 0.00 2.69
3600 4445 6.328934 TGCATGAAATATACTCCCTGTTCCTA 59.671 38.462 0.00 0.00 0.00 2.94
3601 4446 5.132648 TGCATGAAATATACTCCCTGTTCCT 59.867 40.000 0.00 0.00 0.00 3.36
3602 4447 5.376625 TGCATGAAATATACTCCCTGTTCC 58.623 41.667 0.00 0.00 0.00 3.62
3603 4448 6.712095 TCATGCATGAAATATACTCCCTGTTC 59.288 38.462 26.87 0.00 33.08 3.18
3604 4449 6.604171 TCATGCATGAAATATACTCCCTGTT 58.396 36.000 26.87 0.00 33.08 3.16
3605 4450 6.191657 TCATGCATGAAATATACTCCCTGT 57.808 37.500 26.87 0.00 33.08 4.00
3631 4476 6.917533 AGTTCATCAAGCCAAAAATACTCTG 58.082 36.000 0.00 0.00 0.00 3.35
3723 4571 3.290308 ACTCTGAGTTGTGACGTCATC 57.710 47.619 23.12 15.41 0.00 2.92
3760 4609 0.832135 TCTCCCGACCAGCTGTTCTT 60.832 55.000 13.81 0.00 0.00 2.52
3769 4618 0.895530 GTGTTCTCATCTCCCGACCA 59.104 55.000 0.00 0.00 0.00 4.02
3942 4798 1.270625 TGGAAACCTTGCTCGGTAGTG 60.271 52.381 0.00 0.00 35.89 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.