AutoCloner

Multiple sequence alignment - TraesCS2B01G219400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G219400	chr2B	100.000	3266	0	0	1	3266	209825145	209828410	0.000000e+00	6032.0
1	TraesCS2B01G219400	chr2A	92.492	3290	139	43	1	3266	150489979	150486774	0.000000e+00	4608.0
2	TraesCS2B01G219400	chr2A	75.581	172	27	10	2681	2840	3277653	3277821	1.630000e-08	71.3
3	TraesCS2B01G219400	chr2A	100.000	29	0	0	2857	2885	719724150	719724178	2.000000e-03	54.7
4	TraesCS2B01G219400	chr2D	94.698	2716	100	18	570	3266	150918276	150920966	0.000000e+00	4178.0
5	TraesCS2B01G219400	chr2D	87.938	514	20	16	7	501	150917792	150918282	4.730000e-158	568.0
6	TraesCS2B01G219400	chr2D	85.906	447	51	9	2	445	150915885	150916322	1.770000e-127	466.0
7	TraesCS2B01G219400	chrUn	83.190	928	124	19	1504	2402	184669270	184668346	0.000000e+00	821.0
8	TraesCS2B01G219400	chrUn	80.556	540	85	14	1376	1903	184672214	184671683	6.570000e-107	398.0
9	TraesCS2B01G219400	chrUn	77.913	412	71	15	1504	1903	184669673	184669270	4.210000e-59	239.0
10	TraesCS2B01G219400	chrUn	78.072	415	65	17	1504	1903	184671683	184671280	4.210000e-59	239.0
11	TraesCS2B01G219400	chrUn	77.670	412	72	13	1504	1903	184670474	184670071	1.960000e-57	233.0
12	TraesCS2B01G219400	chrUn	77.670	412	72	14	1504	1903	184670877	184670474	1.960000e-57	233.0
13	TraesCS2B01G219400	chrUn	77.670	412	72	14	1504	1903	184671280	184670877	1.960000e-57	233.0
14	TraesCS2B01G219400	chr1B	83.984	743	90	15	1560	2276	629588808	629589547	0.000000e+00	686.0
15	TraesCS2B01G219400	chr1B	77.863	393	52	17	1511	1876	17802113	17801729	9.180000e-51	211.0
16	TraesCS2B01G219400	chr5B	91.827	208	8	3	1701	1899	125266200	125265993	6.900000e-72	281.0
17	TraesCS2B01G219400	chr3B	90.865	208	10	3	1701	1899	101253593	101253386	1.490000e-68	270.0
18	TraesCS2B01G219400	chr6A	76.081	347	66	13	1189	1528	68502273	68502609	7.250000e-37	165.0
19	TraesCS2B01G219400	chr6D	75.775	355	65	17	1189	1534	47266968	47266626	3.370000e-35	159.0
20	TraesCS2B01G219400	chr7D	81.034	174	24	6	1361	1528	518063560	518063730	2.640000e-26	130.0
21	TraesCS2B01G219400	chr7D	100.000	29	0	0	2857	2885	454670026	454669998	2.000000e-03	54.7
22	TraesCS2B01G219400	chr4A	93.220	59	4	0	1389	1447	490605611	490605669	1.610000e-13	87.9
23	TraesCS2B01G219400	chr5A	92.857	56	4	0	1392	1447	306192228	306192173	7.510000e-12	82.4
24	TraesCS2B01G219400	chr5A	100.000	29	0	0	2857	2885	367773547	367773575	2.000000e-03	54.7
25	TraesCS2B01G219400	chr1A	83.117	77	5	4	2812	2887	9361597	9361528	2.720000e-06	63.9
26	TraesCS2B01G219400	chr1A	100.000	29	0	0	2857	2885	111140865	111140893	2.000000e-03	54.7
27	TraesCS2B01G219400	chr3A	100.000	29	0	0	2857	2885	737461978	737462006	2.000000e-03	54.7
28	TraesCS2B01G219400	chr1D	100.000	29	0	0	2857	2885	469601305	469601333	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G219400	chr2B	209825145	209828410	3265	False	6032.000000	6032	100.000	1	3266	1	chr2B.!!$F1	3265
1	TraesCS2B01G219400	chr2A	150486774	150489979	3205	True	4608.000000	4608	92.492	1	3266	1	chr2A.!!$R1	3265
2	TraesCS2B01G219400	chr2D	150915885	150920966	5081	False	1737.333333	4178	89.514	2	3266	3	chr2D.!!$F1	3264
3	TraesCS2B01G219400	chrUn	184668346	184672214	3868	True	342.285714	821	78.963	1376	2402	7	chrUn.!!$R1	1026
4	TraesCS2B01G219400	chr1B	629588808	629589547	739	False	686.000000	686	83.984	1560	2276	1	chr1B.!!$F1	716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
615	2537	1.691976	TCCTACCATACAGCCATTCCG	59.308	52.381	0.00	0.0	0.0	4.30	F
1557	4294	1.150992	CGACTCCTACCCTCCGGAT	59.849	63.158	3.57	0.0	0.0	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1974	6752	0.901124	ACCGCTCAATCTGCTCTTCT	59.099	50.000	0.0	0.0	0.0	2.85	R
2627	7416	1.396301	CCTTGACATGCTCTTTCTCGC	59.604	52.381	0.0	0.0	0.0	5.03	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	9.896263	CAAAATTAGGGTTACGTAGCTTTAAAA	57.104	29.630	9.39	0.00	0.00	1.52
33	34	9.897744	AAAATTAGGGTTACGTAGCTTTAAAAC	57.102	29.630	9.39	0.00	0.00	2.43
63	1967	5.342806	TGTTTGAGATAAGAAGCAACACG	57.657	39.130	0.00	0.00	0.00	4.49
126	2031	8.527810	TGGTGAAACATATTTGGGAAAATAGTC	58.472	33.333	0.00	0.00	39.98	2.59
222	2127	7.867403	CACAAAATAGGTATCCATATGGCAAAC	59.133	37.037	17.58	13.49	34.44	2.93
239	2144	4.923871	GGCAAACGATCTGATATACGTCAT	59.076	41.667	0.00	0.00	38.00	3.06
354	2259	5.539955	AGGAACAAAATTCAAGCATGGTACT	59.460	36.000	0.00	0.00	0.00	2.73
391	2296	3.710209	AAAGTAGAGCCATGAAGCAGT	57.290	42.857	0.00	0.00	34.23	4.40
497	2419	6.445357	AATAACAACAAACAGTCCGTTTCT	57.555	33.333	0.00	0.00	44.78	2.52
502	2424	3.541632	ACAAACAGTCCGTTTCTCATGT	58.458	40.909	0.00	0.00	44.78	3.21
507	2429	4.894784	ACAGTCCGTTTCTCATGTAACAT	58.105	39.130	0.00	0.00	0.00	2.71
521	2443	9.072375	TCTCATGTAACATTTCACACCAAATTA	57.928	29.630	0.00	0.00	0.00	1.40
522	2444	9.859427	CTCATGTAACATTTCACACCAAATTAT	57.141	29.630	0.00	0.00	0.00	1.28
553	2475	7.977789	AATAAACATTTGACACCAAAATCCC	57.022	32.000	0.00	0.00	44.49	3.85
554	2476	5.628797	AAACATTTGACACCAAAATCCCT	57.371	34.783	0.00	0.00	44.49	4.20
555	2477	6.739331	AAACATTTGACACCAAAATCCCTA	57.261	33.333	0.00	0.00	44.49	3.53
556	2478	5.722021	ACATTTGACACCAAAATCCCTAC	57.278	39.130	0.00	0.00	44.49	3.18
557	2479	5.144100	ACATTTGACACCAAAATCCCTACA	58.856	37.500	0.00	0.00	44.49	2.74
558	2480	5.600484	ACATTTGACACCAAAATCCCTACAA	59.400	36.000	0.00	0.00	44.49	2.41
559	2481	6.269769	ACATTTGACACCAAAATCCCTACAAT	59.730	34.615	0.00	0.00	44.49	2.71
560	2482	5.720371	TTGACACCAAAATCCCTACAATG	57.280	39.130	0.00	0.00	0.00	2.82
561	2483	4.735369	TGACACCAAAATCCCTACAATGT	58.265	39.130	0.00	0.00	0.00	2.71
562	2484	5.882040	TGACACCAAAATCCCTACAATGTA	58.118	37.500	0.00	0.00	0.00	2.29
563	2485	6.489603	TGACACCAAAATCCCTACAATGTAT	58.510	36.000	0.00	0.00	0.00	2.29
564	2486	6.601613	TGACACCAAAATCCCTACAATGTATC	59.398	38.462	0.00	0.00	0.00	2.24
565	2487	6.731467	ACACCAAAATCCCTACAATGTATCT	58.269	36.000	0.00	0.00	0.00	1.98
566	2488	7.867921	ACACCAAAATCCCTACAATGTATCTA	58.132	34.615	0.00	0.00	0.00	1.98
615	2537	1.691976	TCCTACCATACAGCCATTCCG	59.308	52.381	0.00	0.00	0.00	4.30
652	2574	4.019174	ACAAGATTCCAAATCGCTCCATT	58.981	39.130	0.00	0.00	0.00	3.16
677	2599	4.498682	GCATGCGCCTTTTCTTTCAGATAT	60.499	41.667	4.18	0.00	0.00	1.63
678	2600	5.585390	CATGCGCCTTTTCTTTCAGATATT	58.415	37.500	4.18	0.00	0.00	1.28
681	2603	5.863397	TGCGCCTTTTCTTTCAGATATTTTG	59.137	36.000	4.18	0.00	0.00	2.44
691	2613	8.861033	TCTTTCAGATATTTTGTATGCATTGC	57.139	30.769	3.54	0.46	0.00	3.56
706	2628	9.559732	TGTATGCATTGCTAATTGATTACTACT	57.440	29.630	3.54	0.00	0.00	2.57
763	2685	5.361285	ACCTTATCACTAGCAAATCGAGAGT	59.639	40.000	0.00	0.00	0.00	3.24
764	2686	6.127310	ACCTTATCACTAGCAAATCGAGAGTT	60.127	38.462	0.00	0.00	0.00	3.01
768	2690	4.022329	TCACTAGCAAATCGAGAGTTGACA	60.022	41.667	16.11	3.04	38.53	3.58
779	2702	6.106877	TCGAGAGTTGACAAACAAGAAAAG	57.893	37.500	0.00	0.00	39.30	2.27
832	2755	3.033185	CGTCGCATCACGTTTTCTTTTT	58.967	40.909	0.00	0.00	44.19	1.94
876	2799	2.266372	CCGTTACCACCATCGCCA	59.734	61.111	0.00	0.00	0.00	5.69
931	2858	6.859112	TTGCTTCTACAGATAAGAGAAGGT	57.141	37.500	11.65	0.00	44.20	3.50
963	2891	2.533463	GGGGCCATCTCCATCCTCC	61.533	68.421	4.39	0.00	0.00	4.30
1432	3363	2.261361	CCTGCATGGACGACGACA	59.739	61.111	0.00	0.00	38.35	4.35
1557	4294	1.150992	CGACTCCTACCCTCCGGAT	59.849	63.158	3.57	0.00	0.00	4.18
1718	6469	5.294306	GGAATGTGCTAATTCTGTGAATCGA	59.706	40.000	10.48	0.00	36.87	3.59
1838	6615	4.568760	TGAAAAATGGGCGTCAACTTTTTC	59.431	37.500	18.72	18.72	40.82	2.29
1974	6752	2.000701	AATCATCGGGGGTGGCTCA	61.001	57.895	0.00	0.00	0.00	4.26
2112	6890	0.468226	AGGACTTGGCGAGTGACAAA	59.532	50.000	13.26	0.00	44.20	2.83
2124	6902	2.740447	GAGTGACAAAACGACATACCCC	59.260	50.000	0.00	0.00	0.00	4.95
2313	7095	8.609176	TGTTGTTGATCTGTAACTTTGTAAGAC	58.391	33.333	0.00	0.00	0.00	3.01
2411	7200	9.685276	TGTCATGAGAATATTTAGGTGACAAAT	57.315	29.630	17.70	0.00	40.95	2.32
2569	7358	6.994221	TCTCTATTTCTTTCTTTCCACGACT	58.006	36.000	0.00	0.00	0.00	4.18
2586	7375	4.211794	CACGACTATTGCATGCATCACATA	59.788	41.667	23.37	14.85	36.64	2.29
2609	7398	1.762370	TGCTATGCACCTTGCTAGCTA	59.238	47.619	17.23	7.59	45.31	3.32
2610	7399	2.224137	TGCTATGCACCTTGCTAGCTAG	60.224	50.000	16.84	16.84	45.31	3.42
2611	7400	2.036475	GCTATGCACCTTGCTAGCTAGA	59.964	50.000	25.15	7.66	45.31	2.43
2612	7401	3.493350	GCTATGCACCTTGCTAGCTAGAA	60.493	47.826	25.15	11.88	45.31	2.10
2613	7402	2.680312	TGCACCTTGCTAGCTAGAAG	57.320	50.000	25.15	21.04	45.31	2.85
2614	7403	1.294857	GCACCTTGCTAGCTAGAAGC	58.705	55.000	25.15	22.20	40.96	3.86
2615	7404	1.946745	CACCTTGCTAGCTAGAAGCC	58.053	55.000	25.15	7.04	43.77	4.35
2616	7405	1.484240	CACCTTGCTAGCTAGAAGCCT	59.516	52.381	25.15	9.36	43.77	4.58
2627	7416	5.275067	AGCTAGAAGCCTAGAATGTTCAG	57.725	43.478	0.00	0.00	43.77	3.02
2646	7435	2.093941	CAGCGAGAAAGAGCATGTCAAG	59.906	50.000	0.00	0.00	35.48	3.02
2655	7444	2.592102	AGCATGTCAAGGTCATGGTT	57.408	45.000	5.05	0.00	46.99	3.67
2853	7645	8.737168	TGTTGATATTTTCCTCTATCACTTGG	57.263	34.615	0.00	0.00	34.84	3.61
2994	7787	7.537596	TGTTCACAGAAAAACCATGGATAAT	57.462	32.000	21.47	1.12	0.00	1.28
3027	7820	3.072211	GTGGGTAGCCTGTCACTTTAAC	58.928	50.000	13.11	0.00	0.00	2.01
3034	7827	2.673368	GCCTGTCACTTTAACGATGGAG	59.327	50.000	0.00	0.00	0.00	3.86
3038	7831	5.334105	CCTGTCACTTTAACGATGGAGTTTG	60.334	44.000	0.00	0.00	35.70	2.93
3048	7841	5.803020	ACGATGGAGTTTGAATTTAGAGC	57.197	39.130	0.00	0.00	0.00	4.09
3054	7847	8.985315	ATGGAGTTTGAATTTAGAGCATGATA	57.015	30.769	0.00	0.00	0.00	2.15
3074	7867	9.431887	CATGATATATCTGTTCATGACATGTGA	57.568	33.333	14.98	0.00	46.16	3.58
3141	7935	7.816995	AGATATAAGATTCAGATTTGACTCCGC	59.183	37.037	0.58	0.00	34.49	5.54
3169	7963	2.029918	GGTGGAAAACTGGAACATGAGC	60.030	50.000	0.00	0.00	38.20	4.26

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	8.579006	TGCTTCTTATCTCAAACATGAAAATGT	58.421	29.630	0.00	0.00	36.10	2.71
33	34	8.975410	TGCTTCTTATCTCAAACATGAAAATG	57.025	30.769	0.00	0.00	0.00	2.32
126	2031	4.848299	GCGAAGTTTCTTGAAATAGCACAG	59.152	41.667	0.00	0.00	0.00	3.66
222	2127	7.841486	ACAAAAACATGACGTATATCAGATCG	58.159	34.615	0.00	0.00	30.46	3.69
336	2241	8.807948	ACATAGTAGTACCATGCTTGAATTTT	57.192	30.769	8.43	0.00	0.00	1.82
354	2259	7.822822	GCTCTACTTTTCCCTTTTGACATAGTA	59.177	37.037	0.00	0.00	0.00	1.82
391	2296	3.603158	TCCTCGATTTCGACAATGGAA	57.397	42.857	6.29	0.00	44.22	3.53
445	2350	9.730705	AGAGAAACATTCATTCATTGACTTCTA	57.269	29.630	0.00	0.00	32.84	2.10
530	2452	7.315066	AGGGATTTTGGTGTCAAATGTTTAT	57.685	32.000	0.00	0.00	41.84	1.40
531	2453	6.739331	AGGGATTTTGGTGTCAAATGTTTA	57.261	33.333	0.00	0.00	41.84	2.01
534	2456	5.144100	TGTAGGGATTTTGGTGTCAAATGT	58.856	37.500	0.00	0.00	41.84	2.71
535	2457	5.720371	TGTAGGGATTTTGGTGTCAAATG	57.280	39.130	0.00	0.00	41.84	2.32
536	2458	6.269769	ACATTGTAGGGATTTTGGTGTCAAAT	59.730	34.615	0.00	0.00	41.84	2.32
537	2459	5.600484	ACATTGTAGGGATTTTGGTGTCAAA	59.400	36.000	0.00	0.00	40.71	2.69
538	2460	5.144100	ACATTGTAGGGATTTTGGTGTCAA	58.856	37.500	0.00	0.00	0.00	3.18
539	2461	4.735369	ACATTGTAGGGATTTTGGTGTCA	58.265	39.130	0.00	0.00	0.00	3.58
540	2462	6.828785	AGATACATTGTAGGGATTTTGGTGTC	59.171	38.462	2.53	0.00	0.00	3.67
541	2463	6.731467	AGATACATTGTAGGGATTTTGGTGT	58.269	36.000	2.53	0.00	0.00	4.16
542	2464	8.924511	ATAGATACATTGTAGGGATTTTGGTG	57.075	34.615	2.53	0.00	0.00	4.17
548	2470	9.574577	TGGGAATATAGATACATTGTAGGGATT	57.425	33.333	2.53	0.00	0.00	3.01
549	2471	9.749996	ATGGGAATATAGATACATTGTAGGGAT	57.250	33.333	2.53	0.00	0.00	3.85
583	2505	5.842907	TGTATGGTAGGATGAGATCAAACG	58.157	41.667	0.00	0.00	0.00	3.60
652	2574	1.068281	TGAAAGAAAAGGCGCATGCAA	59.932	42.857	19.57	0.00	45.35	4.08
681	2603	9.817365	CAGTAGTAATCAATTAGCAATGCATAC	57.183	33.333	8.35	0.00	0.00	2.39
691	2613	8.630278	AGCAACGTACAGTAGTAATCAATTAG	57.370	34.615	0.00	0.00	30.67	1.73
702	2624	3.570926	TCTCCAAGCAACGTACAGTAG	57.429	47.619	0.00	0.00	0.00	2.57
703	2625	4.530710	AATCTCCAAGCAACGTACAGTA	57.469	40.909	0.00	0.00	0.00	2.74
704	2626	3.402628	AATCTCCAAGCAACGTACAGT	57.597	42.857	0.00	0.00	0.00	3.55
705	2627	5.062308	GTCTAAATCTCCAAGCAACGTACAG	59.938	44.000	0.00	0.00	0.00	2.74
706	2628	4.927425	GTCTAAATCTCCAAGCAACGTACA	59.073	41.667	0.00	0.00	0.00	2.90
763	2685	5.728471	TGCCATTCTTTTCTTGTTTGTCAA	58.272	33.333	0.00	0.00	34.61	3.18
764	2686	5.336150	TGCCATTCTTTTCTTGTTTGTCA	57.664	34.783	0.00	0.00	0.00	3.58
768	2690	7.823799	TCTTTTCTTGCCATTCTTTTCTTGTTT	59.176	29.630	0.00	0.00	0.00	2.83
779	2702	4.152938	GCATGGTTTCTTTTCTTGCCATTC	59.847	41.667	0.00	0.00	34.84	2.67
811	2734	2.294479	AAAGAAAACGTGATGCGACG	57.706	45.000	0.00	0.00	44.77	5.12
855	2778	1.876714	CGATGGTGGTAACGGCGAG	60.877	63.158	16.62	0.00	42.51	5.03
1465	3396	2.421739	GATGGGCTCGCCGTACAT	59.578	61.111	1.24	0.00	36.85	2.29
1593	6340	3.512516	GCGAGCTCACCAATGGCC	61.513	66.667	15.40	0.00	0.00	5.36
1838	6615	3.969287	TCTCCAGATCAACAACCTGAG	57.031	47.619	0.00	0.00	0.00	3.35
1974	6752	0.901124	ACCGCTCAATCTGCTCTTCT	59.099	50.000	0.00	0.00	0.00	2.85
2112	6890	4.161001	CCTAGTAACTTGGGGTATGTCGTT	59.839	45.833	0.00	0.00	0.00	3.85
2124	6902	5.011738	TGACTTCTCCAACCCTAGTAACTTG	59.988	44.000	0.00	0.00	0.00	3.16
2313	7095	3.054139	TCCTCAAATCCCAGACTTGATGG	60.054	47.826	0.00	0.00	37.58	3.51
2411	7200	3.955145	CCACCTAACTCATGTGGCA	57.045	52.632	0.00	0.00	42.71	4.92
2569	7358	6.091718	AGCAATTATGTGATGCATGCAATA	57.908	33.333	26.68	14.90	42.45	1.90
2597	7386	1.872773	AGGCTTCTAGCTAGCAAGGT	58.127	50.000	18.83	0.00	41.99	3.50
2609	7398	2.497675	TCGCTGAACATTCTAGGCTTCT	59.502	45.455	0.00	0.00	0.00	2.85
2610	7399	2.863137	CTCGCTGAACATTCTAGGCTTC	59.137	50.000	0.00	0.00	0.00	3.86
2611	7400	2.497675	TCTCGCTGAACATTCTAGGCTT	59.502	45.455	0.00	0.00	0.00	4.35
2612	7401	2.103373	TCTCGCTGAACATTCTAGGCT	58.897	47.619	0.00	0.00	0.00	4.58
2613	7402	2.586258	TCTCGCTGAACATTCTAGGC	57.414	50.000	0.00	0.00	0.00	3.93
2614	7403	4.748892	TCTTTCTCGCTGAACATTCTAGG	58.251	43.478	0.00	0.00	33.88	3.02
2615	7404	4.267452	GCTCTTTCTCGCTGAACATTCTAG	59.733	45.833	0.00	0.00	33.88	2.43
2616	7405	4.177026	GCTCTTTCTCGCTGAACATTCTA	58.823	43.478	0.00	0.00	33.88	2.10
2627	7416	1.396301	CCTTGACATGCTCTTTCTCGC	59.604	52.381	0.00	0.00	0.00	5.03
2709	7498	8.634475	AACTTTAGAATGCTTGACTTTTGAAC	57.366	30.769	0.00	0.00	0.00	3.18
2847	7639	3.016736	AGTTTGACCAAGTGTCCAAGTG	58.983	45.455	0.00	0.00	43.78	3.16
2848	7640	3.366052	AGTTTGACCAAGTGTCCAAGT	57.634	42.857	0.00	0.00	43.78	3.16
2849	7641	4.718940	AAAGTTTGACCAAGTGTCCAAG	57.281	40.909	0.00	0.00	43.78	3.61
2850	7642	4.095185	CGTAAAGTTTGACCAAGTGTCCAA	59.905	41.667	0.00	0.00	43.78	3.53
2851	7643	3.623960	CGTAAAGTTTGACCAAGTGTCCA	59.376	43.478	0.00	0.00	43.78	4.02
2852	7644	3.872771	TCGTAAAGTTTGACCAAGTGTCC	59.127	43.478	0.00	0.00	43.78	4.02
2853	7645	5.473796	TTCGTAAAGTTTGACCAAGTGTC	57.526	39.130	0.00	0.00	44.72	3.67
2934	7727	4.041075	TGCTGACACATACTTCCCTTTGTA	59.959	41.667	0.00	0.00	0.00	2.41
2994	7787	4.528206	CAGGCTACCCACATACATCTGATA	59.472	45.833	0.00	0.00	0.00	2.15
3007	7800	2.289195	CGTTAAAGTGACAGGCTACCCA	60.289	50.000	0.00	0.00	0.00	4.51
3027	7820	5.801350	TGCTCTAAATTCAAACTCCATCG	57.199	39.130	0.00	0.00	0.00	3.84
3054	7847	6.354938	AGCTTCACATGTCATGAACAGATAT	58.645	36.000	19.77	0.00	42.37	1.63
3074	7867	3.903467	AGTTTCACCCTCAAGAAAGCTT	58.097	40.909	0.00	0.00	34.69	3.74
3115	7908	7.816995	GCGGAGTCAAATCTGAATCTTATATCT	59.183	37.037	0.00	0.00	44.36	1.98
3140	7934	1.737793	CCAGTTTTCCACCACTATCGC	59.262	52.381	0.00	0.00	0.00	4.58
3141	7935	3.328382	TCCAGTTTTCCACCACTATCG	57.672	47.619	0.00	0.00	0.00	2.92
3169	7963	1.884579	ACTGAATGGCAACTGCAGAAG	59.115	47.619	23.35	13.22	44.36	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.